Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 527:61338585e7f7 find-refactoring tip

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integration mainline->find-refactoring
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 19 Jul 2024 14:00:35 +0200
parents 54d518dcd74a
children 2ab3d45c0b3c
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Affero General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Affero General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Affero General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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24 #pragma once
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26 #include "IDatabaseBackend.h"
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28 #include <OrthancException.h>
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30 #include <boost/thread/shared_mutex.hpp>
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33 namespace OrthancDatabases
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34 {
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35 /**
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36 * WARNING: This class can be invoked concurrently by several
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37 * threads if it is used from "DatabaseBackendAdapterV3".
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38 **/
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39 class IndexBackend : public IDatabaseBackend
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40 {
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41 private:
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42 class LookupFormatter;
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43
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44 OrthancPluginContext* context_;
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45
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46 boost::shared_mutex outputFactoryMutex_;
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47 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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48
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49 protected:
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50 virtual void ClearDeletedFiles(DatabaseManager& manager);
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51
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52 virtual void ClearDeletedResources(DatabaseManager& manager);
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53
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54 virtual void ClearRemainingAncestor(DatabaseManager& manager);
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56 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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57 DatabaseManager& manager);
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59 void SignalDeletedResources(IDatabaseBackendOutput& output,
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60 DatabaseManager& manager);
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62 private:
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63 void ReadChangesInternal(IDatabaseBackendOutput& output,
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64 bool& done,
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65 DatabaseManager& manager,
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66 DatabaseManager::CachedStatement& statement,
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67 const Dictionary& args,
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68 uint32_t limit);
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70 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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71 bool& done,
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72 DatabaseManager::CachedStatement& statement,
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73 const Dictionary& args,
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74 uint32_t limit);
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76 public:
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77 explicit IndexBackend(OrthancPluginContext* context);
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78
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79 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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80 {
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81 return context_;
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82 }
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83
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84 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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86 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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88 virtual void AddAttachment(DatabaseManager& manager,
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89 int64_t id,
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90 const OrthancPluginAttachment& attachment,
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91 int64_t revision) ORTHANC_OVERRIDE;
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93 virtual void AttachChild(DatabaseManager& manager,
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94 int64_t parent,
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95 int64_t child) ORTHANC_OVERRIDE;
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97 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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99 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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101 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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102 DatabaseManager& manager,
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103 int64_t id,
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104 int32_t attachment) ORTHANC_OVERRIDE;
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106 virtual void DeleteMetadata(DatabaseManager& manager,
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107 int64_t id,
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108 int32_t metadataType) ORTHANC_OVERRIDE;
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110 virtual void DeleteResource(IDatabaseBackendOutput& output,
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111 DatabaseManager& manager,
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112 int64_t id) ORTHANC_OVERRIDE;
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113
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114 virtual void GetAllInternalIds(std::list<int64_t>& target,
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115 DatabaseManager& manager,
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116 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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118 virtual void GetAllPublicIds(std::list<std::string>& target,
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119 DatabaseManager& manager,
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120 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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122 virtual void GetAllPublicIds(std::list<std::string>& target,
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123 DatabaseManager& manager,
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124 OrthancPluginResourceType resourceType,
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125 int64_t since,
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126 uint32_t limit) ORTHANC_OVERRIDE;
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127
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128 virtual void GetChanges(IDatabaseBackendOutput& output,
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129 bool& done /*out*/,
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130 DatabaseManager& manager,
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131 int64_t since,
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132 uint32_t limit) ORTHANC_OVERRIDE;
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133
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134 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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135 DatabaseManager& manager,
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136 int64_t id) ORTHANC_OVERRIDE;
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137
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138 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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139 DatabaseManager& manager,
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140 int64_t id) ORTHANC_OVERRIDE;
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141
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142 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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143 bool& done /*out*/,
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144 DatabaseManager& manager,
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145 int64_t since,
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146 uint32_t limit) ORTHANC_OVERRIDE;
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147
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148 virtual void GetLastChange(IDatabaseBackendOutput& output,
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149 DatabaseManager& manager) ORTHANC_OVERRIDE;
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150
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151 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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152 DatabaseManager& manager) ORTHANC_OVERRIDE;
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153
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154 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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155 DatabaseManager& manager,
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156 int64_t id) ORTHANC_OVERRIDE;
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157
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158 virtual std::string GetPublicId(DatabaseManager& manager,
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159 int64_t resourceId) ORTHANC_OVERRIDE;
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160
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161 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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162 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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163
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164 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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165 int64_t resourceId) ORTHANC_OVERRIDE;
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166
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167 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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168
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169 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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170
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171 virtual bool IsExistingResource(DatabaseManager& manager,
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172 int64_t internalId) ORTHANC_OVERRIDE;
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173
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174 virtual bool IsProtectedPatient(DatabaseManager& manager,
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175 int64_t internalId) ORTHANC_OVERRIDE;
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176
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177 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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178 DatabaseManager& manager,
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179 int64_t id) ORTHANC_OVERRIDE;
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180
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181 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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182 DatabaseManager& manager,
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183 int64_t id) ORTHANC_OVERRIDE;
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184
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185 virtual void LogChange(DatabaseManager& manager,
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186 int32_t changeType,
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187 int64_t resourceId,
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188 OrthancPluginResourceType resourceType,
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189 const char* date) ORTHANC_OVERRIDE;
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190
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191 virtual void LogExportedResource(DatabaseManager& manager,
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192 OrthancPluginResourceType resourceType,
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193 const char* publicId,
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194 const char* modality,
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195 const char* date,
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196 const char* patientId,
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197 const char* studyInstanceUid,
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198 const char* seriesInstanceUid,
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199 const char* sopInstanceUid) ORTHANC_OVERRIDE;
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200
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201 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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202 int64_t& revision /*out*/,
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203 DatabaseManager& manager,
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204 int64_t id,
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205 int32_t contentType) ORTHANC_OVERRIDE;
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206
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207 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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208 DatabaseManager& manager,
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209 const char* serverIdentifier,
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210 int32_t property) ORTHANC_OVERRIDE;
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211
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212 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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213 DatabaseManager& manager,
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214 OrthancPluginResourceType resourceType,
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215 uint16_t group,
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216 uint16_t element,
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217 OrthancPluginIdentifierConstraint constraint,
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218 const char* value) ORTHANC_OVERRIDE;
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219
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220 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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221 DatabaseManager& manager,
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222 OrthancPluginResourceType resourceType,
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223 uint16_t group,
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224 uint16_t element,
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225 const char* start,
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226 const char* end) ORTHANC_OVERRIDE;
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227
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228 virtual bool LookupMetadata(std::string& target /*out*/,
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229 int64_t& revision /*out*/,
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230 DatabaseManager& manager,
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231 int64_t id,
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232 int32_t metadataType) ORTHANC_OVERRIDE;
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233
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234 virtual bool LookupParent(int64_t& parentId /*out*/,
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235 DatabaseManager& manager,
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236 int64_t resourceId) ORTHANC_OVERRIDE;
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237
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238 virtual bool LookupResource(int64_t& id /*out*/,
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239 OrthancPluginResourceType& type /*out*/,
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240 DatabaseManager& manager,
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241 const char* publicId) ORTHANC_OVERRIDE;
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242
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243 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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244 DatabaseManager& manager) ORTHANC_OVERRIDE;
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245
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246 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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247 DatabaseManager& manager,
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248 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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249
225
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250 virtual void SetGlobalProperty(DatabaseManager& manager,
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251 const char* serverIdentifier,
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252 int32_t property,
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253 const char* utf8) ORTHANC_OVERRIDE;
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254
225
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255 virtual void SetMainDicomTag(DatabaseManager& manager,
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256 int64_t id,
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257 uint16_t group,
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258 uint16_t element,
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259 const char* value) ORTHANC_OVERRIDE;
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260
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261 virtual void SetIdentifierTag(DatabaseManager& manager,
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262 int64_t id,
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263 uint16_t group,
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264 uint16_t element,
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265 const char* value) ORTHANC_OVERRIDE;
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266
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267 virtual void SetMetadata(DatabaseManager& manager,
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268 int64_t id,
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269 int32_t metadataType,
256
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270 const char* value,
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271 int64_t revision) ORTHANC_OVERRIDE;
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272
225
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273 virtual void SetProtectedPatient(DatabaseManager& manager,
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274 int64_t internalId,
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275 bool isProtected) ORTHANC_OVERRIDE;
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276
225
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277 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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278
225
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279 virtual void UpgradeDatabase(DatabaseManager& manager,
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280 uint32_t targetVersion,
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281 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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282
225
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283 virtual void ClearMainDicomTags(DatabaseManager& manager,
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284 int64_t internalId) ORTHANC_OVERRIDE;
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285
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286 // For unit testing only!
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287 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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288
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289 // For unit testing only!
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290 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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291
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292 // For unit testing only!
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293 virtual bool GetParentPublicId(std::string& target,
225
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294 DatabaseManager& manager,
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295 int64_t id);
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296
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297 // For unit tests only!
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298 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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299 DatabaseManager& manager,
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300 int64_t id);
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301
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302 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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303 // New primitive since Orthanc 1.5.2
203
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304 virtual void LookupResources(IDatabaseBackendOutput& output,
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305 DatabaseManager& manager,
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306 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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307 OrthancPluginResourceType queryLevel,
401
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308 const std::set<std::string>& labels,
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309 Orthanc::LabelsConstraint labelsConstraint,
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310 uint32_t limit,
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311 bool requestSomeInstance) ORTHANC_OVERRIDE;
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312 #endif
75
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313
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314 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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315 // New primitive since Orthanc 1.5.2
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316 virtual void SetResourcesContent(
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317 DatabaseManager& manager,
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318 uint32_t countIdentifierTags,
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319 const OrthancPluginResourcesContentTags* identifierTags,
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320 uint32_t countMainDicomTags,
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321 const OrthancPluginResourcesContentTags* mainDicomTags,
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322 uint32_t countMetadata,
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323 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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324 #endif
76
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325
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326 // New primitive since Orthanc 1.5.2
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327 virtual void GetChildrenMetadata(std::list<std::string>& target,
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328 DatabaseManager& manager,
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329 int64_t resourceId,
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330 int32_t metadata) ORTHANC_OVERRIDE;
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331
225
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332 virtual void TagMostRecentPatient(DatabaseManager& manager,
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333 int64_t patient) ORTHANC_OVERRIDE;
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334
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335 // New primitive since Orthanc 1.5.4
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336 virtual bool LookupResourceAndParent(int64_t& id,
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337 OrthancPluginResourceType& type,
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338 std::string& parentPublicId,
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339 DatabaseManager& manager,
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340 const char* publicId) ORTHANC_OVERRIDE;
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341
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342 // New primitive since Orthanc 1.5.4
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343 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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344 DatabaseManager& manager,
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345 int64_t id) ORTHANC_OVERRIDE;
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346
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347 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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348 {
218
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349 // This extension is available in PostgreSQL and MySQL, but is
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350 // emulated by "CreateInstanceGeneric()" in SQLite
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351 return false;
202
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352 }
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353
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354 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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355 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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356 DatabaseManager& manager,
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357 const char* hashPatient,
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358 const char* hashStudy,
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359 const char* hashSeries,
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360 const char* hashInstance) ORTHANC_OVERRIDE
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361 {
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362 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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363 }
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364 #endif
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365
271
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366 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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367 // This function corresponds to
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368 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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369 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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370 DatabaseManager& manager,
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371 const char* hashPatient,
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372 const char* hashStudy,
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373 const char* hashSeries,
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374 const char* hashInstance);
271
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375 #endif
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376
237
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377 bool LookupGlobalIntegerProperty(int& target /*out*/,
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378 DatabaseManager& manager,
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379 const char* serverIdentifier,
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380 int32_t property);
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381
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382 void SetGlobalIntegerProperty(DatabaseManager& manager,
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383 const char* serverIdentifier,
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384 int32_t property,
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385 int value);
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386
396
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387 virtual void AddLabel(DatabaseManager& manager,
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388 int64_t resource,
391
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389 const std::string& label) ORTHANC_OVERRIDE;
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390
396
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391 virtual void RemoveLabel(DatabaseManager& manager,
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392 int64_t resource,
391
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393 const std::string& label) ORTHANC_OVERRIDE;
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394
396
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395 virtual void ListLabels(std::list<std::string>& target,
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396 DatabaseManager& manager,
391
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397 int64_t resource) ORTHANC_OVERRIDE;
402
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398
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399 virtual void ListAllLabels(std::list<std::string>& target,
82921a29349a implemented IDatabaseBackend::ListAllLabels()
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400 DatabaseManager& manager) ORTHANC_OVERRIDE;
391
d14e6ff04a5c added primitives to handle labels
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401
431
7c1fe5d6c12c PG: IncrementGlobalProperty
Alain Mazy <am@osimis.io>
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402 virtual bool HasAtomicIncrementGlobalProperty() ORTHANC_OVERRIDE;
7c1fe5d6c12c PG: IncrementGlobalProperty
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403
7c1fe5d6c12c PG: IncrementGlobalProperty
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404 virtual int64_t IncrementGlobalProperty(DatabaseManager& manager,
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405 const char* serverIdentifier,
7c1fe5d6c12c PG: IncrementGlobalProperty
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406 int32_t property,
7c1fe5d6c12c PG: IncrementGlobalProperty
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407 int64_t increment) ORTHANC_OVERRIDE;
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408
436
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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409 virtual bool HasUpdateAndGetStatistics() ORTHANC_OVERRIDE;
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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410
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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411 virtual void UpdateAndGetStatistics(DatabaseManager& manager,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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412 int64_t& patientsCount,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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413 int64_t& studiesCount,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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414 int64_t& seriesCount,
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415 int64_t& instancesCount,
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416 int64_t& compressedSize,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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417 int64_t& uncompressedSize) ORTHANC_OVERRIDE;
431
7c1fe5d6c12c PG: IncrementGlobalProperty
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418
447
5881e4af5799 measure DB latency
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419 virtual bool HasMeasureLatency() ORTHANC_OVERRIDE;
5881e4af5799 measure DB latency
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420
5881e4af5799 measure DB latency
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421 virtual uint64_t MeasureLatency(DatabaseManager& manager) ORTHANC_OVERRIDE;
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parents: 436
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422
234
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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423 /**
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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424 * "maxDatabaseRetries" is to handle
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425 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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426 * collision multiple writers. "countConnections" and
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
diff changeset
427 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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428 **/
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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429 static void Register(IndexBackend* backend,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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430 size_t countConnections,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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431 unsigned int maxDatabaseRetries);
222
c8e06b41feec refactoring registration/finalization of index backend
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parents: 221
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432
c8e06b41feec refactoring registration/finalization of index backend
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433 static void Finalize();
226
a4918d57435c DatabaseManager doesn't IDatabaseFactory anymore
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parents: 225
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434
403
91124cc8a8c7 database plugins are informed about the identifier tags
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parents: 402
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435 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend,
91124cc8a8c7 database plugins are informed about the identifier tags
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parents: 402
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436 bool hasIdentifierTags,
91124cc8a8c7 database plugins are informed about the identifier tags
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parents: 402
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437 const std::list<IdentifierTag>& identifierTags);
0
7cea966b6829 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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438 };
7cea966b6829 initial commit
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parents:
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439 }