Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 501:594859656a06 large-queries

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Added support for ExtendedApiV1: /changes
author Alain Mazy <am@orthanc.team>
date Thu, 11 Apr 2024 18:52:42 +0200
parents f0976163dbe1
children 2ab3d45c0b3c
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2024 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Affero General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Affero General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Affero General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #pragma once
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25 #include "IDatabaseBackend.h"
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27 #include <OrthancException.h>
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29 #include <boost/thread/shared_mutex.hpp>
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32 namespace OrthancDatabases
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33 {
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34 /**
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35 * WARNING: This class can be invoked concurrently by several
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36 * threads if it is used from "DatabaseBackendAdapterV3".
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37 **/
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38 class IndexBackend : public IDatabaseBackend
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39 {
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40 private:
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41 class LookupFormatter;
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43 OrthancPluginContext* context_;
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44
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45 boost::shared_mutex outputFactoryMutex_;
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46 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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47
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48 protected:
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49 virtual void ClearDeletedFiles(DatabaseManager& manager);
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50
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51 virtual void ClearDeletedResources(DatabaseManager& manager);
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52
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53 virtual void ClearRemainingAncestor(DatabaseManager& manager);
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55 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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56 DatabaseManager& manager);
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58 void SignalDeletedResources(IDatabaseBackendOutput& output,
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59 DatabaseManager& manager);
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61 private:
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62 void ReadChangesInternal(IDatabaseBackendOutput& output,
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63 bool& done,
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64 DatabaseManager& manager,
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65 DatabaseManager::CachedStatement& statement,
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66 const Dictionary& args,
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67 uint32_t limit,
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68 bool returnFirstResults);
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70 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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71 bool& done,
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72 DatabaseManager::CachedStatement& statement,
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73 const Dictionary& args,
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74 uint32_t limit);
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76 public:
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77 explicit IndexBackend(OrthancPluginContext* context);
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78
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79 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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80 {
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81 return context_;
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82 }
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83
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84 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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86 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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87
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88 virtual void AddAttachment(DatabaseManager& manager,
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89 int64_t id,
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90 const OrthancPluginAttachment& attachment,
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91 int64_t revision) ORTHANC_OVERRIDE;
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93 virtual void AttachChild(DatabaseManager& manager,
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94 int64_t parent,
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95 int64_t child) ORTHANC_OVERRIDE;
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97 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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99 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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101 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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102 DatabaseManager& manager,
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103 int64_t id,
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104 int32_t attachment) ORTHANC_OVERRIDE;
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105
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106 virtual void DeleteMetadata(DatabaseManager& manager,
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107 int64_t id,
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108 int32_t metadataType) ORTHANC_OVERRIDE;
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110 virtual void DeleteResource(IDatabaseBackendOutput& output,
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111 DatabaseManager& manager,
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112 int64_t id) ORTHANC_OVERRIDE;
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113
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114 virtual void GetAllInternalIds(std::list<int64_t>& target,
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115 DatabaseManager& manager,
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116 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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117
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118 virtual void GetAllPublicIds(std::list<std::string>& target,
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119 DatabaseManager& manager,
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120 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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122 virtual void GetAllPublicIds(std::list<std::string>& target,
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123 DatabaseManager& manager,
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124 OrthancPluginResourceType resourceType,
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125 int64_t since,
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126 uint32_t limit) ORTHANC_OVERRIDE;
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127
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128 virtual void GetChanges(IDatabaseBackendOutput& output,
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129 bool& done /*out*/,
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130 DatabaseManager& manager,
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131 int64_t since,
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132 uint32_t limit) ORTHANC_OVERRIDE;
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133
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134 virtual void GetChanges2(IDatabaseBackendOutput& output,
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135 bool& done /*out*/,
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136 DatabaseManager& manager,
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137 int64_t since,
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138 int64_t to,
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139 int32_t changeType,
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140 uint32_t limit) ORTHANC_OVERRIDE;
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141
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142 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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143 DatabaseManager& manager,
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144 int64_t id) ORTHANC_OVERRIDE;
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145
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146 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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147 DatabaseManager& manager,
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148 int64_t id) ORTHANC_OVERRIDE;
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149
203
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150 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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151 bool& done /*out*/,
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152 DatabaseManager& manager,
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153 int64_t since,
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154 uint32_t limit) ORTHANC_OVERRIDE;
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155
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156 virtual void GetLastChange(IDatabaseBackendOutput& output,
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157 DatabaseManager& manager) ORTHANC_OVERRIDE;
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158
225
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159 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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160 DatabaseManager& manager) ORTHANC_OVERRIDE;
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161
203
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162 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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163 DatabaseManager& manager,
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164 int64_t id) ORTHANC_OVERRIDE;
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165
225
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166 virtual std::string GetPublicId(DatabaseManager& manager,
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167 int64_t resourceId) ORTHANC_OVERRIDE;
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168
225
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169 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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170 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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171
225
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172 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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173 int64_t resourceId) ORTHANC_OVERRIDE;
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174
225
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175 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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176
225
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177 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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178
225
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179 virtual bool IsExistingResource(DatabaseManager& manager,
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180 int64_t internalId) ORTHANC_OVERRIDE;
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181
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182 virtual bool IsProtectedPatient(DatabaseManager& manager,
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183 int64_t internalId) ORTHANC_OVERRIDE;
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184
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185 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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186 DatabaseManager& manager,
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187 int64_t id) ORTHANC_OVERRIDE;
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188
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189 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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190 DatabaseManager& manager,
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191 int64_t id) ORTHANC_OVERRIDE;
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192
225
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193 virtual void LogChange(DatabaseManager& manager,
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194 int32_t changeType,
209
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195 int64_t resourceId,
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196 OrthancPluginResourceType resourceType,
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197 const char* date) ORTHANC_OVERRIDE;
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198
225
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199 virtual void LogExportedResource(DatabaseManager& manager,
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200 OrthancPluginResourceType resourceType,
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201 const char* publicId,
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202 const char* modality,
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203 const char* date,
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204 const char* patientId,
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205 const char* studyInstanceUid,
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206 const char* seriesInstanceUid,
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207 const char* sopInstanceUid) ORTHANC_OVERRIDE;
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208
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209 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
261
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210 int64_t& revision /*out*/,
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211 DatabaseManager& manager,
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212 int64_t id,
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213 int32_t contentType) ORTHANC_OVERRIDE;
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214
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215 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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216 DatabaseManager& manager,
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217 const char* serverIdentifier,
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218 int32_t property) ORTHANC_OVERRIDE;
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219
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220 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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221 DatabaseManager& manager,
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222 OrthancPluginResourceType resourceType,
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223 uint16_t group,
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224 uint16_t element,
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225 OrthancPluginIdentifierConstraint constraint,
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226 const char* value) ORTHANC_OVERRIDE;
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227
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228 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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229 DatabaseManager& manager,
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230 OrthancPluginResourceType resourceType,
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231 uint16_t group,
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232 uint16_t element,
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233 const char* start,
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234 const char* end) ORTHANC_OVERRIDE;
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235
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236 virtual bool LookupMetadata(std::string& target /*out*/,
256
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237 int64_t& revision /*out*/,
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238 DatabaseManager& manager,
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239 int64_t id,
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240 int32_t metadataType) ORTHANC_OVERRIDE;
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241
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242 virtual bool LookupParent(int64_t& parentId /*out*/,
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243 DatabaseManager& manager,
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244 int64_t resourceId) ORTHANC_OVERRIDE;
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245
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246 virtual bool LookupResource(int64_t& id /*out*/,
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247 OrthancPluginResourceType& type /*out*/,
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248 DatabaseManager& manager,
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249 const char* publicId) ORTHANC_OVERRIDE;
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250
225
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251 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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252 DatabaseManager& manager) ORTHANC_OVERRIDE;
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253
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254 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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255 DatabaseManager& manager,
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256 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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257
225
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258 virtual void SetGlobalProperty(DatabaseManager& manager,
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259 const char* serverIdentifier,
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260 int32_t property,
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261 const char* utf8) ORTHANC_OVERRIDE;
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262
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263 virtual void SetMainDicomTag(DatabaseManager& manager,
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264 int64_t id,
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265 uint16_t group,
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266 uint16_t element,
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267 const char* value) ORTHANC_OVERRIDE;
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268
225
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269 virtual void SetIdentifierTag(DatabaseManager& manager,
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270 int64_t id,
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271 uint16_t group,
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272 uint16_t element,
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273 const char* value) ORTHANC_OVERRIDE;
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274
225
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275 virtual void SetMetadata(DatabaseManager& manager,
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276 int64_t id,
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277 int32_t metadataType,
256
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278 const char* value,
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279 int64_t revision) ORTHANC_OVERRIDE;
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280
225
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281 virtual void SetProtectedPatient(DatabaseManager& manager,
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282 int64_t internalId,
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283 bool isProtected) ORTHANC_OVERRIDE;
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284
225
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285 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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286
225
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287 virtual void UpgradeDatabase(DatabaseManager& manager,
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288 uint32_t targetVersion,
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289 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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290
225
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291 virtual void ClearMainDicomTags(DatabaseManager& manager,
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292 int64_t internalId) ORTHANC_OVERRIDE;
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293
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294 // For unit testing only!
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295 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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296
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297 // For unit testing only!
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298 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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299
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300 // For unit testing only!
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301 virtual bool GetParentPublicId(std::string& target,
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302 DatabaseManager& manager,
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303 int64_t id);
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304
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305 // For unit tests only!
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306 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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307 DatabaseManager& manager,
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308 int64_t id);
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309
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310 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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311 // New primitive since Orthanc 1.5.2
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312 virtual void LookupResources(IDatabaseBackendOutput& output,
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313 DatabaseManager& manager,
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314 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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315 OrthancPluginResourceType queryLevel,
401
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316 const std::set<std::string>& labels,
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317 Orthanc::LabelsConstraint labelsConstraint,
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318 uint32_t limit,
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319 bool requestSomeInstance) ORTHANC_OVERRIDE;
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320 #endif
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321
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322 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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323 // New primitive since Orthanc 1.5.2
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324 virtual void SetResourcesContent(
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325 DatabaseManager& manager,
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326 uint32_t countIdentifierTags,
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327 const OrthancPluginResourcesContentTags* identifierTags,
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328 uint32_t countMainDicomTags,
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329 const OrthancPluginResourcesContentTags* mainDicomTags,
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330 uint32_t countMetadata,
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331 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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332 #endif
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333
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334 // New primitive since Orthanc 1.5.2
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335 virtual void GetChildrenMetadata(std::list<std::string>& target,
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336 DatabaseManager& manager,
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337 int64_t resourceId,
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338 int32_t metadata) ORTHANC_OVERRIDE;
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339
225
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340 virtual void TagMostRecentPatient(DatabaseManager& manager,
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341 int64_t patient) ORTHANC_OVERRIDE;
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342
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343 // New primitive since Orthanc 1.5.4
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344 virtual bool LookupResourceAndParent(int64_t& id,
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345 OrthancPluginResourceType& type,
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346 std::string& parentPublicId,
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347 DatabaseManager& manager,
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348 const char* publicId) ORTHANC_OVERRIDE;
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349
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350 // New primitive since Orthanc 1.5.4
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351 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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352 DatabaseManager& manager,
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353 int64_t id) ORTHANC_OVERRIDE;
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354
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355 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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356 {
218
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357 // This extension is available in PostgreSQL and MySQL, but is
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358 // emulated by "CreateInstanceGeneric()" in SQLite
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359 return false;
202
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360 }
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361
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362 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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363 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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364 DatabaseManager& manager,
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365 const char* hashPatient,
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366 const char* hashStudy,
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367 const char* hashSeries,
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368 const char* hashInstance) ORTHANC_OVERRIDE
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369 {
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370 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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371 }
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372 #endif
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373
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374 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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375 // This function corresponds to
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376 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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377 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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378 DatabaseManager& manager,
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379 const char* hashPatient,
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380 const char* hashStudy,
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381 const char* hashSeries,
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382 const char* hashInstance);
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383 #endif
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384
237
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385 bool LookupGlobalIntegerProperty(int& target /*out*/,
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386 DatabaseManager& manager,
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387 const char* serverIdentifier,
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388 int32_t property);
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389
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390 void SetGlobalIntegerProperty(DatabaseManager& manager,
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391 const char* serverIdentifier,
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392 int32_t property,
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393 int value);
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394
396
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395 virtual void AddLabel(DatabaseManager& manager,
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396 int64_t resource,
391
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397 const std::string& label) ORTHANC_OVERRIDE;
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398
396
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399 virtual void RemoveLabel(DatabaseManager& manager,
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400 int64_t resource,
391
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401 const std::string& label) ORTHANC_OVERRIDE;
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402
396
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403 virtual void ListLabels(std::list<std::string>& target,
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404 DatabaseManager& manager,
391
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405 int64_t resource) ORTHANC_OVERRIDE;
402
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406
82921a29349a implemented IDatabaseBackend::ListAllLabels()
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407 virtual void ListAllLabels(std::list<std::string>& target,
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408 DatabaseManager& manager) ORTHANC_OVERRIDE;
391
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409
431
7c1fe5d6c12c PG: IncrementGlobalProperty
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410 virtual bool HasAtomicIncrementGlobalProperty() ORTHANC_OVERRIDE;
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411
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412 virtual int64_t IncrementGlobalProperty(DatabaseManager& manager,
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413 const char* serverIdentifier,
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414 int32_t property,
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415 int64_t increment) ORTHANC_OVERRIDE;
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416
436
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417 virtual bool HasUpdateAndGetStatistics() ORTHANC_OVERRIDE;
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418
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419 virtual void UpdateAndGetStatistics(DatabaseManager& manager,
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420 int64_t& patientsCount,
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421 int64_t& studiesCount,
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422 int64_t& seriesCount,
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423 int64_t& instancesCount,
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424 int64_t& compressedSize,
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425 int64_t& uncompressedSize) ORTHANC_OVERRIDE;
431
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426
447
5881e4af5799 measure DB latency
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427 virtual bool HasMeasureLatency() ORTHANC_OVERRIDE;
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428
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429 virtual uint64_t MeasureLatency(DatabaseManager& manager) ORTHANC_OVERRIDE;
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430
501
594859656a06 Added support for ExtendedApiV1: /changes
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431 // New primitive since Orthanc 1.13.0
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432 virtual bool HasExtendedApiV1() ORTHANC_OVERRIDE
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433 {
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434 return true;
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435 }
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parents: 460
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436
594859656a06 Added support for ExtendedApiV1: /changes
Alain Mazy <am@orthanc.team>
parents: 460
diff changeset
437
234
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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438 /**
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439 * "maxDatabaseRetries" is to handle
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440 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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441 * collision multiple writers. "countConnections" and
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442 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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443 **/
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444 static void Register(IndexBackend* backend,
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445 size_t countConnections,
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diff changeset
446 unsigned int maxDatabaseRetries);
222
c8e06b41feec refactoring registration/finalization of index backend
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447
c8e06b41feec refactoring registration/finalization of index backend
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448 static void Finalize();
226
a4918d57435c DatabaseManager doesn't IDatabaseFactory anymore
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449
403
91124cc8a8c7 database plugins are informed about the identifier tags
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diff changeset
450 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend,
91124cc8a8c7 database plugins are informed about the identifier tags
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diff changeset
451 bool hasIdentifierTags,
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diff changeset
452 const std::list<IdentifierTag>& identifierTags);
0
7cea966b6829 initial commit
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parents:
diff changeset
453 };
7cea966b6829 initial commit
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454 }