Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 539:12f1c5265081 find-refactoring

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integration mainline->find-refactoring
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 09 Sep 2024 12:44:10 +0200
parents 4ecf50a4521c aff02ad9fbbc
children 7f45f23b10d0
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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ecd0b719cff5 update year to 2024
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Affero General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Affero General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Affero General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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24 #pragma once
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26 #include "IDatabaseBackend.h"
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28 #include <OrthancException.h>
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30 #include <boost/thread/shared_mutex.hpp>
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31
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33 namespace OrthancDatabases
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34 {
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35 /**
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36 * WARNING: This class can be invoked concurrently by several
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37 * threads if it is used from "DatabaseBackendAdapterV3".
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38 **/
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39 class IndexBackend : public IDatabaseBackend
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40 {
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41 private:
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42 class LookupFormatter;
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43
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44 OrthancPluginContext* context_;
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45
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46 boost::shared_mutex outputFactoryMutex_;
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47 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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48
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49 protected:
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50 virtual void ClearDeletedFiles(DatabaseManager& manager);
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51
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52 virtual void ClearDeletedResources(DatabaseManager& manager);
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53
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54 virtual void ClearRemainingAncestor(DatabaseManager& manager);
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56 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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57 DatabaseManager& manager);
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59 void SignalDeletedResources(IDatabaseBackendOutput& output,
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60 DatabaseManager& manager);
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61
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62 private:
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63 void ReadChangesInternal(IDatabaseBackendOutput& output,
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64 bool& done,
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65 DatabaseManager& manager,
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66 DatabaseManager::CachedStatement& statement,
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67 const Dictionary& args,
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68 uint32_t limit,
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69 bool returnFirstResults);
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71 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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72 bool& done,
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73 DatabaseManager::CachedStatement& statement,
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74 const Dictionary& args,
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75 uint32_t limit);
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77 public:
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78 explicit IndexBackend(OrthancPluginContext* context);
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79
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80 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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81 {
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82 return context_;
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83 }
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84
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85 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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87 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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89 virtual void AddAttachment(DatabaseManager& manager,
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90 int64_t id,
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91 const OrthancPluginAttachment& attachment,
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92 int64_t revision) ORTHANC_OVERRIDE;
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93
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94 virtual void AttachChild(DatabaseManager& manager,
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95 int64_t parent,
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96 int64_t child) ORTHANC_OVERRIDE;
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98 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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100 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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102 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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103 DatabaseManager& manager,
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104 int64_t id,
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105 int32_t attachment) ORTHANC_OVERRIDE;
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106
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107 virtual void DeleteMetadata(DatabaseManager& manager,
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108 int64_t id,
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109 int32_t metadataType) ORTHANC_OVERRIDE;
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111 virtual void DeleteResource(IDatabaseBackendOutput& output,
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112 DatabaseManager& manager,
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113 int64_t id) ORTHANC_OVERRIDE;
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114
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115 virtual void GetAllInternalIds(std::list<int64_t>& target,
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116 DatabaseManager& manager,
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117 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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118
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119 virtual void GetAllPublicIds(std::list<std::string>& target,
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120 DatabaseManager& manager,
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121 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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123 virtual void GetAllPublicIds(std::list<std::string>& target,
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124 DatabaseManager& manager,
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125 OrthancPluginResourceType resourceType,
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126 int64_t since,
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127 uint32_t limit) ORTHANC_OVERRIDE;
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128
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129 virtual void GetChanges(IDatabaseBackendOutput& output,
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130 bool& done /*out*/,
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131 DatabaseManager& manager,
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132 int64_t since,
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133 uint32_t limit) ORTHANC_OVERRIDE;
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134
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135 virtual void GetChangesExtended(IDatabaseBackendOutput& output,
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136 bool& done /*out*/,
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137 DatabaseManager& manager,
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138 int64_t since,
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139 int64_t to,
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140 int32_t changeType,
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141 uint32_t limit) ORTHANC_OVERRIDE;
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142
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143 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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144 DatabaseManager& manager,
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145 int64_t id) ORTHANC_OVERRIDE;
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146
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147 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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148 DatabaseManager& manager,
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149 int64_t id) ORTHANC_OVERRIDE;
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150
203
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151 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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152 bool& done /*out*/,
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153 DatabaseManager& manager,
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154 int64_t since,
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155 uint32_t limit) ORTHANC_OVERRIDE;
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156
225
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157 virtual void GetLastChange(IDatabaseBackendOutput& output,
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158 DatabaseManager& manager) ORTHANC_OVERRIDE;
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159
225
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160 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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161 DatabaseManager& manager) ORTHANC_OVERRIDE;
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162
203
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163 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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164 DatabaseManager& manager,
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165 int64_t id) ORTHANC_OVERRIDE;
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166
225
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167 virtual std::string GetPublicId(DatabaseManager& manager,
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168 int64_t resourceId) ORTHANC_OVERRIDE;
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169
225
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170 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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171 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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172
225
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173 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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174 int64_t resourceId) ORTHANC_OVERRIDE;
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175
225
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176 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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177
225
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178 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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179
225
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180 virtual bool IsExistingResource(DatabaseManager& manager,
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181 int64_t internalId) ORTHANC_OVERRIDE;
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182
225
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183 virtual bool IsProtectedPatient(DatabaseManager& manager,
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184 int64_t internalId) ORTHANC_OVERRIDE;
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185
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186 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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187 DatabaseManager& manager,
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188 int64_t id) ORTHANC_OVERRIDE;
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189
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190 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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191 DatabaseManager& manager,
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192 int64_t id) ORTHANC_OVERRIDE;
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193
225
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194 virtual void LogChange(DatabaseManager& manager,
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195 int32_t changeType,
209
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196 int64_t resourceId,
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197 OrthancPluginResourceType resourceType,
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198 const char* date) ORTHANC_OVERRIDE;
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199
225
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200 virtual void LogExportedResource(DatabaseManager& manager,
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201 OrthancPluginResourceType resourceType,
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202 const char* publicId,
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203 const char* modality,
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204 const char* date,
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205 const char* patientId,
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206 const char* studyInstanceUid,
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207 const char* seriesInstanceUid,
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208 const char* sopInstanceUid) ORTHANC_OVERRIDE;
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209
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210 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
261
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211 int64_t& revision /*out*/,
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212 DatabaseManager& manager,
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213 int64_t id,
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214 int32_t contentType) ORTHANC_OVERRIDE;
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215
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216 virtual bool LookupGlobalProperty(std::string& target /*out*/,
225
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217 DatabaseManager& manager,
221
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218 const char* serverIdentifier,
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219 int32_t property) ORTHANC_OVERRIDE;
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220
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221 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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222 DatabaseManager& manager,
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223 OrthancPluginResourceType resourceType,
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224 uint16_t group,
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225 uint16_t element,
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226 OrthancPluginIdentifierConstraint constraint,
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227 const char* value) ORTHANC_OVERRIDE;
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228
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229 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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230 DatabaseManager& manager,
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231 OrthancPluginResourceType resourceType,
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232 uint16_t group,
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233 uint16_t element,
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234 const char* start,
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235 const char* end) ORTHANC_OVERRIDE;
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236
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237 virtual bool LookupMetadata(std::string& target /*out*/,
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238 int64_t& revision /*out*/,
225
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239 DatabaseManager& manager,
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240 int64_t id,
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241 int32_t metadataType) ORTHANC_OVERRIDE;
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242
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243 virtual bool LookupParent(int64_t& parentId /*out*/,
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244 DatabaseManager& manager,
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245 int64_t resourceId) ORTHANC_OVERRIDE;
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246
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247 virtual bool LookupResource(int64_t& id /*out*/,
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248 OrthancPluginResourceType& type /*out*/,
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249 DatabaseManager& manager,
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250 const char* publicId) ORTHANC_OVERRIDE;
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251
225
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252 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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253 DatabaseManager& manager) ORTHANC_OVERRIDE;
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254
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255 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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256 DatabaseManager& manager,
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257 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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258
225
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259 virtual void SetGlobalProperty(DatabaseManager& manager,
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260 const char* serverIdentifier,
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261 int32_t property,
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262 const char* utf8) ORTHANC_OVERRIDE;
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263
225
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264 virtual void SetMainDicomTag(DatabaseManager& manager,
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265 int64_t id,
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266 uint16_t group,
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267 uint16_t element,
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268 const char* value) ORTHANC_OVERRIDE;
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269
225
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270 virtual void SetIdentifierTag(DatabaseManager& manager,
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271 int64_t id,
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272 uint16_t group,
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273 uint16_t element,
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274 const char* value) ORTHANC_OVERRIDE;
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275
225
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276 virtual void SetMetadata(DatabaseManager& manager,
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277 int64_t id,
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278 int32_t metadataType,
256
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279 const char* value,
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280 int64_t revision) ORTHANC_OVERRIDE;
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281
225
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282 virtual void SetProtectedPatient(DatabaseManager& manager,
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283 int64_t internalId,
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284 bool isProtected) ORTHANC_OVERRIDE;
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285
225
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286 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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287
225
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288 virtual void UpgradeDatabase(DatabaseManager& manager,
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289 uint32_t targetVersion,
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290 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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291
225
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292 virtual void ClearMainDicomTags(DatabaseManager& manager,
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293 int64_t internalId) ORTHANC_OVERRIDE;
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294
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295 // For unit testing only!
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296 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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297
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298 // For unit testing only!
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299 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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300
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301 // For unit testing only!
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302 virtual bool GetParentPublicId(std::string& target,
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303 DatabaseManager& manager,
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304 int64_t id);
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305
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306 // For unit tests only!
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307 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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308 DatabaseManager& manager,
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309 int64_t id);
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310
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311 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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312 // New primitive since Orthanc 1.5.2
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313 virtual void LookupResources(IDatabaseBackendOutput& output,
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314 DatabaseManager& manager,
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315 const Orthanc::DatabaseConstraints& lookup,
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316 OrthancPluginResourceType queryLevel,
401
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317 const std::set<std::string>& labels,
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318 Orthanc::LabelsConstraint labelsConstraint,
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319 uint32_t limit,
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320 bool requestSomeInstance) ORTHANC_OVERRIDE;
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321 #endif
75
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322
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323 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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324 // New primitive since Orthanc 1.5.2
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325 virtual void SetResourcesContent(
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326 DatabaseManager& manager,
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327 uint32_t countIdentifierTags,
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328 const OrthancPluginResourcesContentTags* identifierTags,
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329 uint32_t countMainDicomTags,
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330 const OrthancPluginResourcesContentTags* mainDicomTags,
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331 uint32_t countMetadata,
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332 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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333 #endif
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334
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335 // New primitive since Orthanc 1.5.2
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336 virtual void GetChildrenMetadata(std::list<std::string>& target,
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337 DatabaseManager& manager,
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338 int64_t resourceId,
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339 int32_t metadata) ORTHANC_OVERRIDE;
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340
225
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341 virtual void TagMostRecentPatient(DatabaseManager& manager,
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342 int64_t patient) ORTHANC_OVERRIDE;
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343
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344 // New primitive since Orthanc 1.5.4
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345 virtual bool LookupResourceAndParent(int64_t& id,
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346 OrthancPluginResourceType& type,
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347 std::string& parentPublicId,
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348 DatabaseManager& manager,
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349 const char* publicId) ORTHANC_OVERRIDE;
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350
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351 // New primitive since Orthanc 1.5.4
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352 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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353 DatabaseManager& manager,
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354 int64_t id) ORTHANC_OVERRIDE;
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355
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356 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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357 {
218
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358 // This extension is available in PostgreSQL and MySQL, but is
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359 // emulated by "CreateInstanceGeneric()" in SQLite
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360 return false;
202
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361 }
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362
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363 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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364 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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365 DatabaseManager& manager,
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366 const char* hashPatient,
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367 const char* hashStudy,
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368 const char* hashSeries,
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369 const char* hashInstance) ORTHANC_OVERRIDE
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370 {
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371 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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372 }
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373 #endif
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374
271
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375 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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376 // This function corresponds to
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377 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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378 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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379 DatabaseManager& manager,
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380 const char* hashPatient,
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381 const char* hashStudy,
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382 const char* hashSeries,
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383 const char* hashInstance);
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384 #endif
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385
237
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386 bool LookupGlobalIntegerProperty(int& target /*out*/,
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387 DatabaseManager& manager,
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388 const char* serverIdentifier,
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389 int32_t property);
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390
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391 void SetGlobalIntegerProperty(DatabaseManager& manager,
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392 const char* serverIdentifier,
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393 int32_t property,
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394 int value);
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395
396
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396 virtual void AddLabel(DatabaseManager& manager,
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397 int64_t resource,
391
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398 const std::string& label) ORTHANC_OVERRIDE;
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399
396
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400 virtual void RemoveLabel(DatabaseManager& manager,
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401 int64_t resource,
391
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402 const std::string& label) ORTHANC_OVERRIDE;
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403
396
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404 virtual void ListLabels(std::list<std::string>& target,
7b3acfa95bd8 implementation of list/add/remove labels in postgresql
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405 DatabaseManager& manager,
391
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406 int64_t resource) ORTHANC_OVERRIDE;
402
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parents: 401
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407
82921a29349a implemented IDatabaseBackend::ListAllLabels()
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408 virtual void ListAllLabels(std::list<std::string>& target,
82921a29349a implemented IDatabaseBackend::ListAllLabels()
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parents: 401
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409 DatabaseManager& manager) ORTHANC_OVERRIDE;
391
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parents: 389
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410
431
7c1fe5d6c12c PG: IncrementGlobalProperty
Alain Mazy <am@osimis.io>
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411 virtual bool HasAtomicIncrementGlobalProperty() ORTHANC_OVERRIDE;
7c1fe5d6c12c PG: IncrementGlobalProperty
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412
7c1fe5d6c12c PG: IncrementGlobalProperty
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413 virtual int64_t IncrementGlobalProperty(DatabaseManager& manager,
7c1fe5d6c12c PG: IncrementGlobalProperty
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414 const char* serverIdentifier,
7c1fe5d6c12c PG: IncrementGlobalProperty
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415 int32_t property,
7c1fe5d6c12c PG: IncrementGlobalProperty
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416 int64_t increment) ORTHANC_OVERRIDE;
7c1fe5d6c12c PG: IncrementGlobalProperty
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417
436
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418 virtual bool HasUpdateAndGetStatistics() ORTHANC_OVERRIDE;
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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419
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420 virtual void UpdateAndGetStatistics(DatabaseManager& manager,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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421 int64_t& patientsCount,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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422 int64_t& studiesCount,
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parents: 433
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423 int64_t& seriesCount,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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424 int64_t& instancesCount,
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parents: 433
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425 int64_t& compressedSize,
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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parents: 433
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426 int64_t& uncompressedSize) ORTHANC_OVERRIDE;
431
7c1fe5d6c12c PG: IncrementGlobalProperty
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parents: 403
diff changeset
427
447
5881e4af5799 measure DB latency
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parents: 436
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428 virtual bool HasMeasureLatency() ORTHANC_OVERRIDE;
5881e4af5799 measure DB latency
Alain Mazy <am@osimis.io>
parents: 436
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429
5881e4af5799 measure DB latency
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parents: 436
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430 virtual uint64_t MeasureLatency(DatabaseManager& manager) ORTHANC_OVERRIDE;
5881e4af5799 measure DB latency
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parents: 436
diff changeset
431
532
25cfcb752af6 merged find-refactoring -> large-queries
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parents: 521
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432 // New primitive since Orthanc 1.12.5
25cfcb752af6 merged find-refactoring -> large-queries
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433 virtual bool HasExtendedChanges() const ORTHANC_OVERRIDE
501
594859656a06 Added support for ExtendedApiV1: /changes
Alain Mazy <am@orthanc.team>
parents: 460
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434 {
594859656a06 Added support for ExtendedApiV1: /changes
Alain Mazy <am@orthanc.team>
parents: 460
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435 return true;
594859656a06 Added support for ExtendedApiV1: /changes
Alain Mazy <am@orthanc.team>
parents: 460
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436 }
594859656a06 Added support for ExtendedApiV1: /changes
Alain Mazy <am@orthanc.team>
parents: 460
diff changeset
437
594859656a06 Added support for ExtendedApiV1: /changes
Alain Mazy <am@orthanc.team>
parents: 460
diff changeset
438
234
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
439 /**
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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440 * "maxDatabaseRetries" is to handle
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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441 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
diff changeset
442 * collision multiple writers. "countConnections" and
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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443 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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444 **/
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
diff changeset
445 static void Register(IndexBackend* backend,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
diff changeset
446 size_t countConnections,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
diff changeset
447 unsigned int maxDatabaseRetries);
222
c8e06b41feec refactoring registration/finalization of index backend
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parents: 221
diff changeset
448
c8e06b41feec refactoring registration/finalization of index backend
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parents: 221
diff changeset
449 static void Finalize();
226
a4918d57435c DatabaseManager doesn't IDatabaseFactory anymore
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parents: 225
diff changeset
450
403
91124cc8a8c7 database plugins are informed about the identifier tags
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parents: 402
diff changeset
451 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend,
91124cc8a8c7 database plugins are informed about the identifier tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 402
diff changeset
452 bool hasIdentifierTags,
91124cc8a8c7 database plugins are informed about the identifier tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 402
diff changeset
453 const std::list<IdentifierTag>& identifierTags);
0
7cea966b6829 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 };
7cea966b6829 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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455 }