Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.cpp @ 4523:fba1a8fff2b8
fix build
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 23 Feb 2021 13:46:58 +0100 |
parents | 5b929e6b3c36 |
children | 350a22c094f2 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
4045 | 41 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
43 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h" | |
44 #include "../../OrthancFramework/Sources/Logging.h" | |
45 #include "../../OrthancFramework/Sources/Toolbox.h" | |
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46 |
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47 #include "Database/ResourcesContent.h" |
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48 #include "OrthancConfiguration.h" |
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49 #include "Search/DatabaseLookup.h" |
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50 #include "Search/DicomTagConstraint.h" |
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51 #include "ServerContext.h" |
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52 #include "ServerIndexChange.h" |
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53 #include "ServerToolbox.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
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57 #include <stack> |
0 | 58 |
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59 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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60 |
62 | 61 namespace Orthanc |
0 | 62 { |
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63 static void CopyListToVector(std::vector<std::string>& target, |
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64 const std::list<std::string>& source) |
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65 { |
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66 target.resize(source.size()); |
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67 |
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68 size_t pos = 0; |
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69 |
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70 for (std::list<std::string>::const_iterator |
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71 it = source.begin(); it != source.end(); ++it) |
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72 { |
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73 target[pos] = *it; |
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74 pos ++; |
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75 } |
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76 } |
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77 |
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78 |
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79 class ServerIndex::Listener : public IDatabaseListener |
0 | 80 { |
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81 private: |
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82 struct FileToRemove |
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83 { |
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84 private: |
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85 std::string uuid_; |
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86 FileContentType type_; |
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87 |
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88 public: |
4205 | 89 explicit FileToRemove(const FileInfo& info) : |
90 uuid_(info.GetUuid()), | |
91 type_(info.GetContentType()) | |
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92 { |
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93 } |
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94 |
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95 const std::string& GetUuid() const |
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96 { |
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97 return uuid_; |
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98 } |
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99 |
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100 FileContentType GetContentType() const |
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101 { |
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102 return type_; |
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103 } |
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104 }; |
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105 |
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106 ServerContext& context_; |
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107 bool hasRemainingLevel_; |
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108 ResourceType remainingType_; |
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109 std::string remainingPublicId_; |
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110 std::list<FileToRemove> pendingFilesToRemove_; |
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111 std::list<ServerIndexChange> pendingChanges_; |
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112 uint64_t sizeOfFilesToRemove_; |
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113 bool insideTransaction_; |
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114 |
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115 void Reset() |
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116 { |
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117 sizeOfFilesToRemove_ = 0; |
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118 hasRemainingLevel_ = false; |
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119 pendingFilesToRemove_.clear(); |
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120 pendingChanges_.clear(); |
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121 } |
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122 |
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123 public: |
4205 | 124 explicit Listener(ServerContext& context) : |
125 context_(context), | |
126 insideTransaction_(false) | |
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127 { |
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128 Reset(); |
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129 assert(ResourceType_Patient < ResourceType_Study && |
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130 ResourceType_Study < ResourceType_Series && |
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131 ResourceType_Series < ResourceType_Instance); |
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132 } |
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133 |
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134 void StartTransaction() |
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135 { |
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136 Reset(); |
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137 insideTransaction_ = true; |
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138 } |
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139 |
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140 void EndTransaction() |
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141 { |
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142 insideTransaction_ = false; |
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143 } |
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144 |
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145 uint64_t GetSizeOfFilesToRemove() |
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146 { |
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147 return sizeOfFilesToRemove_; |
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148 } |
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149 |
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150 void CommitFilesToRemove() |
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151 { |
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152 for (std::list<FileToRemove>::const_iterator |
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153 it = pendingFilesToRemove_.begin(); |
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154 it != pendingFilesToRemove_.end(); ++it) |
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155 { |
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156 try |
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157 { |
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158 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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159 } |
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160 catch (OrthancException& e) |
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161 { |
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162 LOG(ERROR) << "Unable to remove an attachment from the storage area: " |
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163 << it->GetUuid() << " (type: " << EnumerationToString(it->GetContentType()) << ")"; |
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164 } |
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165 } |
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166 } |
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167 |
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168 void CommitChanges() |
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169 { |
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170 for (std::list<ServerIndexChange>::const_iterator |
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171 it = pendingChanges_.begin(); |
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172 it != pendingChanges_.end(); ++it) |
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173 { |
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174 context_.SignalChange(*it); |
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175 } |
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176 } |
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177 |
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178 virtual void SignalRemainingAncestor(ResourceType parentType, |
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179 const std::string& publicId) |
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180 { |
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181 LOG(TRACE) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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182 |
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183 if (hasRemainingLevel_) |
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184 { |
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185 if (parentType < remainingType_) |
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186 { |
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187 remainingType_ = parentType; |
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188 remainingPublicId_ = publicId; |
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189 } |
1158 | 190 } |
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191 else |
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192 { |
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193 hasRemainingLevel_ = true; |
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194 remainingType_ = parentType; |
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195 remainingPublicId_ = publicId; |
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196 } |
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197 } |
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198 |
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199 virtual void SignalFileDeleted(const FileInfo& info) |
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200 { |
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201 assert(Toolbox::IsUuid(info.GetUuid())); |
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202 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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203 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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204 } |
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205 |
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206 virtual void SignalChange(const ServerIndexChange& change) |
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207 { |
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208 LOG(TRACE) << "Change related to resource " << change.GetPublicId() << " of type " |
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209 << EnumerationToString(change.GetResourceType()) << ": " |
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210 << EnumerationToString(change.GetChangeType()); |
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211 |
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212 if (insideTransaction_) |
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213 { |
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214 pendingChanges_.push_back(change); |
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215 } |
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216 else |
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217 { |
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218 context_.SignalChange(change); |
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219 } |
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220 } |
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221 |
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222 bool HasRemainingLevel() const |
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223 { |
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224 return hasRemainingLevel_; |
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225 } |
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226 |
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227 ResourceType GetRemainingType() const |
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228 { |
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229 assert(HasRemainingLevel()); |
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230 return remainingType_; |
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231 } |
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232 |
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233 const std::string& GetRemainingPublicId() const |
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234 { |
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235 assert(HasRemainingLevel()); |
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236 return remainingPublicId_; |
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237 } |
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238 }; |
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240 | |
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241 class ServerIndex::Transaction |
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242 { |
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243 private: |
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244 ServerIndex& index_; |
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245 std::unique_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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246 bool isCommitted_; |
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248 public: |
4205 | 249 explicit Transaction(ServerIndex& index) : |
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250 index_(index), |
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251 isCommitted_(false) |
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252 { |
1247 | 253 transaction_.reset(index_.db_.StartTransaction()); |
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254 transaction_->Begin(); |
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255 |
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256 index_.listener_->StartTransaction(); |
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257 } |
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258 |
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259 ~Transaction() |
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260 { |
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261 index_.listener_->EndTransaction(); |
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262 |
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263 if (!isCommitted_) |
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264 { |
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265 transaction_->Rollback(); |
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266 } |
278
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267 } |
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268 |
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269 void Commit(uint64_t sizeOfAddedFiles) |
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270 { |
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271 if (!isCommitted_) |
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272 { |
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273 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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274 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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275 |
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276 transaction_->Commit(delta); |
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277 |
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278 // We can remove the files once the SQLite transaction has |
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279 // been successfully committed. Some files might have to be |
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280 // deleted because of recycling. |
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281 index_.listener_->CommitFilesToRemove(); |
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282 |
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283 // Send all the pending changes to the Orthanc plugins |
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284 index_.listener_->CommitChanges(); |
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285 |
278
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286 isCommitted_ = true; |
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287 } |
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288 } |
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289 }; |
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290 |
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291 |
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292 class ServerIndex::UnstableResourcePayload |
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293 { |
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294 private: |
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295 ResourceType type_; |
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296 std::string publicId_; |
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297 boost::posix_time::ptime time_; |
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298 |
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299 public: |
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300 UnstableResourcePayload() : type_(ResourceType_Instance) |
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301 { |
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302 } |
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303 |
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304 UnstableResourcePayload(Orthanc::ResourceType type, |
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305 const std::string& publicId) : |
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306 type_(type), |
4205 | 307 publicId_(publicId), |
308 time_(boost::posix_time::second_clock::local_time()) | |
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309 { |
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310 } |
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311 |
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312 unsigned int GetAge() const |
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313 { |
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314 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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315 } |
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316 |
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317 ResourceType GetResourceType() const |
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318 { |
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319 return type_; |
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320 } |
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321 |
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322 const std::string& GetPublicId() const |
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323 { |
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324 return publicId_; |
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325 } |
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326 }; |
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327 |
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328 |
3027 | 329 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
330 { | |
331 private: | |
332 class TagInfo | |
333 { | |
334 private: | |
335 ResourceType level_; | |
336 DicomTagType type_; | |
337 | |
338 public: | |
339 TagInfo() | |
340 { | |
341 } | |
342 | |
343 TagInfo(ResourceType level, | |
344 DicomTagType type) : | |
345 level_(level), | |
346 type_(type) | |
347 { | |
348 } | |
349 | |
350 ResourceType GetLevel() const | |
351 { | |
352 return level_; | |
353 } | |
354 | |
355 DicomTagType GetType() const | |
356 { | |
357 return type_; | |
358 } | |
359 }; | |
360 | |
361 typedef std::map<DicomTag, TagInfo> Registry; | |
362 | |
363 | |
364 Registry registry_; | |
365 | |
366 void LoadTags(ResourceType level) | |
367 { | |
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368 { |
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369 const DicomTag* tags = NULL; |
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370 size_t size; |
3027 | 371 |
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372 ServerToolbox::LoadIdentifiers(tags, size, level); |
3027 | 373 |
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374 for (size_t i = 0; i < size; i++) |
3027 | 375 { |
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376 if (registry_.find(tags[i]) == registry_.end()) |
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377 { |
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378 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); |
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379 } |
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380 else |
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381 { |
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382 // These patient-level tags are copied in the study level |
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383 assert(level == ResourceType_Study && |
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384 (tags[i] == DICOM_TAG_PATIENT_ID || |
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385 tags[i] == DICOM_TAG_PATIENT_NAME || |
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386 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); |
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387 } |
3027 | 388 } |
389 } | |
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390 |
3027 | 391 { |
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392 std::set<DicomTag> tags; |
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393 DicomMap::GetMainDicomTags(tags, level); |
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394 |
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395 for (std::set<DicomTag>::const_iterator |
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396 tag = tags.begin(); tag != tags.end(); ++tag) |
3027 | 397 { |
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398 if (registry_.find(*tag) == registry_.end()) |
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399 { |
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400 registry_[*tag] = TagInfo(level, DicomTagType_Main); |
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401 } |
3027 | 402 } |
403 } | |
404 } | |
405 | |
406 public: | |
407 MainDicomTagsRegistry() | |
408 { | |
409 LoadTags(ResourceType_Patient); | |
410 LoadTags(ResourceType_Study); | |
411 LoadTags(ResourceType_Series); | |
412 LoadTags(ResourceType_Instance); | |
413 } | |
414 | |
415 void LookupTag(ResourceType& level, | |
416 DicomTagType& type, | |
417 const DicomTag& tag) const | |
418 { | |
419 Registry::const_iterator it = registry_.find(tag); | |
420 | |
421 if (it == registry_.end()) | |
422 { | |
423 // Default values | |
424 level = ResourceType_Instance; | |
425 type = DicomTagType_Generic; | |
426 } | |
427 else | |
428 { | |
429 level = it->second.GetLevel(); | |
430 type = it->second.GetType(); | |
431 } | |
432 } | |
433 }; | |
434 | |
435 | |
212 | 436 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 437 const std::string& uuid, |
202 | 438 ResourceType expectedType) |
0 | 439 { |
206
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440 boost::mutex::scoped_lock lock(mutex_); |
201
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441 |
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442 Transaction t(*this); |
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443 |
202 | 444 int64_t id; |
445 ResourceType type; | |
1294 | 446 if (!db_.LookupResource(id, type, uuid) || |
202 | 447 expectedType != type) |
0 | 448 { |
449 return false; | |
450 } | |
202 | 451 |
1247 | 452 db_.DeleteResource(id); |
0 | 453 |
202 | 454 if (listener_->HasRemainingLevel()) |
0 | 455 { |
4205 | 456 ResourceType remainingType = listener_->GetRemainingType(); |
457 const std::string& remainingUuid = listener_->GetRemainingPublicId(); | |
0 | 458 |
459 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
4205 | 460 target["RemainingAncestor"]["Path"] = GetBasePath(remainingType, remainingUuid); |
461 target["RemainingAncestor"]["Type"] = EnumerationToString(remainingType); | |
462 target["RemainingAncestor"]["ID"] = remainingUuid; | |
0 | 463 } |
464 else | |
465 { | |
466 target["RemainingAncestor"] = Json::nullValue; | |
467 } | |
468 | |
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469 t.Commit(0); |
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470 |
0 | 471 return true; |
472 } | |
473 | |
474 | |
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475 void ServerIndex::FlushThread(ServerIndex* that, |
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476 unsigned int threadSleep) |
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477 { |
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478 // By default, wait for 10 seconds before flushing |
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479 unsigned int sleep = 10; |
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480 |
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481 try |
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482 { |
744 | 483 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 484 std::string sleepString; |
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485 |
1247 | 486 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 487 Toolbox::IsInteger(sleepString)) |
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488 { |
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489 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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490 } |
511
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491 } |
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492 catch (boost::bad_lexical_cast&) |
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493 { |
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494 } |
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495 |
206
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496 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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497 |
511
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498 unsigned int count = 0; |
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499 |
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500 while (!that->done_) |
206
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501 { |
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502 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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503 count++; |
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504 if (count < sleep) |
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505 { |
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506 continue; |
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507 } |
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508 |
2217 | 509 Logging::Flush(); |
510 | |
511
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511 boost::mutex::scoped_lock lock(that->mutex_); |
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512 |
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513 try |
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514 { |
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515 that->db_.FlushToDisk(); |
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516 } |
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517 catch (OrthancException&) |
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518 { |
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519 LOG(ERROR) << "Cannot flush the SQLite database to the disk (is your filesystem full?)"; |
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520 } |
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521 |
511
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522 count = 0; |
206
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523 } |
511
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524 |
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525 LOG(INFO) << "Stopping the database flushing thread"; |
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526 } |
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527 |
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528 |
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529 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 530 const DicomMap& dicomSummary) |
531 { | |
532 try | |
533 { | |
656 | 534 const DicomValue* value; |
535 const DicomValue* value2; | |
536 | |
433 | 537 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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538 !value->IsNull() && |
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539 !value->IsBinary() && |
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540 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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541 !value2->IsNull() && |
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542 !value2->IsBinary()) |
433 | 543 { |
544 // Patch for series with temporal positions thanks to Will Ryder | |
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545 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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546 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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547 target = imagesInAcquisition * countTemporalPositions; |
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548 return (target > 0); |
433 | 549 } |
550 | |
551 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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552 !value->IsNull() && |
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553 !value->IsBinary() && |
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554 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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555 !value2->IsBinary() && |
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556 !value2->IsNull()) |
433 | 557 { |
558 // Support of Cardio-PET images | |
1737
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559 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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560 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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561 target = numberOfSlices * numberOfTimeSlices; |
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562 return (target > 0); |
433 | 563 } |
564 | |
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565 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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566 !value->IsNull() && |
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567 !value->IsBinary()) |
433 | 568 { |
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569 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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570 return (target > 0); |
433 | 571 } |
572 } | |
1737
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573 catch (OrthancException&) |
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574 { |
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575 } |
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576 catch (boost::bad_lexical_cast&) |
433 | 577 { |
578 } | |
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579 |
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580 return false; |
433 | 581 } |
582 | |
583 | |
1237 | 584 |
585 | |
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586 static bool LookupStringMetadata(std::string& result, |
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587 const std::map<MetadataType, std::string>& metadata, |
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588 MetadataType type) |
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589 { |
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590 std::map<MetadataType, std::string>::const_iterator found = metadata.find(type); |
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591 |
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592 if (found == metadata.end()) |
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593 { |
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594 return false; |
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595 } |
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596 else |
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597 { |
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598 result = found->second; |
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599 return true; |
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600 } |
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601 } |
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602 |
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603 |
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604 static bool LookupIntegerMetadata(int64_t& result, |
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605 const std::map<MetadataType, std::string>& metadata, |
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606 MetadataType type) |
1237 | 607 { |
1238 | 608 std::string s; |
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609 if (!LookupStringMetadata(s, metadata, type)) |
1237 | 610 { |
611 return false; | |
612 } | |
613 | |
614 try | |
615 { | |
1238 | 616 result = boost::lexical_cast<int64_t>(s); |
1237 | 617 return true; |
618 } | |
619 catch (boost::bad_lexical_cast&) | |
620 { | |
621 return false; | |
622 } | |
623 } | |
624 | |
625 | |
1297 | 626 void ServerIndex::LogChange(int64_t internalId, |
627 ChangeType changeType, | |
628 ResourceType resourceType, | |
629 const std::string& publicId) | |
630 { | |
631 ServerIndexChange change(changeType, resourceType, publicId); | |
1300
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632 |
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633 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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634 { |
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635 db_.LogChange(internalId, change); |
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636 } |
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|
637 |
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638 assert(listener_.get() != NULL); |
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639 listener_->SignalChange(change); |
1297 | 640 } |
641 | |
1237 | 642 |
643 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
644 { | |
645 std::string oldValue; | |
646 | |
1247 | 647 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 648 { |
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|
649 uint64_t oldNumber; |
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650 |
1237 | 651 try |
652 { | |
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653 oldNumber = boost::lexical_cast<uint64_t>(oldValue); |
1237 | 654 } |
655 catch (boost::bad_lexical_cast&) | |
656 { | |
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657 LOG(ERROR) << "Cannot read the global sequence " |
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658 << boost::lexical_cast<std::string>(property) << ", resetting it"; |
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changeset
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659 oldNumber = 0; |
1237 | 660 } |
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661 |
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662 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
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663 return oldNumber + 1; |
1237 | 664 } |
665 else | |
666 { | |
667 // Initialize the sequence at "1" | |
1247 | 668 db_.SetGlobalProperty(property, "1"); |
1237 | 669 return 1; |
670 } | |
671 } | |
672 | |
673 | |
674 | |
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diff
changeset
|
675 ServerIndex::ServerIndex(ServerContext& context, |
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676 IDatabaseWrapper& db, |
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677 unsigned int threadSleep) : |
511
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678 done_(false), |
1247 | 679 db_(db), |
269
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680 maximumStorageSize_(0), |
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681 maximumPatients_(0), |
3027 | 682 mainDicomTagsRegistry_(new MainDicomTagsRegistry) |
186
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683 { |
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684 listener_.reset(new Listener(context)); |
1247 | 685 db_.SetListener(*listener_); |
180
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686 |
269
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687 // Initial recycling if the parameters have changed since the last |
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688 // execution of Orthanc |
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689 StandaloneRecycling(); |
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690 |
1306
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IDatabaseWrapper::HasFlushToDisk()
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691 if (db.HasFlushToDisk()) |
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IDatabaseWrapper::HasFlushToDisk()
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692 { |
2665
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693 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
1306
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IDatabaseWrapper::HasFlushToDisk()
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694 } |
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IDatabaseWrapper::HasFlushToDisk()
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695 |
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696 unstableResourcesMonitorThread_ = boost::thread |
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697 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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698 } |
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699 |
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700 |
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701 |
206
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702 ServerIndex::~ServerIndex() |
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703 { |
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704 if (!done_) |
511
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705 { |
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706 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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707 Stop(); |
511
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708 } |
0 | 709 } |
710 | |
711 | |
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712 |
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713 void ServerIndex::Stop() |
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714 { |
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715 if (!done_) |
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716 { |
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717 done_ = true; |
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718 |
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719 if (db_.HasFlushToDisk() && |
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720 flushThread_.joinable()) |
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721 { |
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722 flushThread_.join(); |
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723 } |
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|
724 |
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725 if (unstableResourcesMonitorThread_.joinable()) |
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726 { |
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727 unstableResourcesMonitorThread_.join(); |
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|
728 } |
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|
729 } |
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|
730 } |
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|
731 |
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|
732 |
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733 static void SetInstanceMetadata(ResourcesContent& content, |
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734 std::map<MetadataType, std::string>& instanceMetadata, |
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735 int64_t instance, |
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736 MetadataType metadata, |
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|
737 const std::string& value) |
2188 | 738 { |
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739 content.AddMetadata(instance, metadata, value); |
2188 | 740 instanceMetadata[metadata] = value; |
741 } | |
742 | |
743 | |
3080
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744 void ServerIndex::SignalNewResource(ChangeType changeType, |
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745 ResourceType level, |
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started refactoring of ServerIndex::Store()
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|
746 const std::string& publicId, |
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747 int64_t internalId) |
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|
748 { |
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|
749 ServerIndexChange change(changeType, level, publicId); |
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started refactoring of ServerIndex::Store()
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diff
changeset
|
750 db_.LogChange(internalId, change); |
1a75595d8e44
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diff
changeset
|
751 |
1a75595d8e44
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diff
changeset
|
752 assert(listener_.get() != NULL); |
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|
753 listener_->SignalChange(change); |
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|
754 } |
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diff
changeset
|
755 |
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started refactoring of ServerIndex::Store()
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changeset
|
756 |
1006
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diff
changeset
|
757 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
4505
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removed cached dicom summary from DicomInstanceToStore
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diff
changeset
|
758 const DicomMap& dicomSummary, |
3813
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|
759 const Attachments& attachments, |
4506
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|
760 const MetadataMap& metadata, |
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|
761 const DicomInstanceOrigin& origin, |
4499 | 762 bool overwrite, |
4506
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refactoring ServerIndex::Store()
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changeset
|
763 bool hasTransferSyntax, |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
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|
764 DicomTransferSyntax transferSyntax, |
4499 | 765 bool hasPixelDataOffset, |
766 uint64_t pixelDataOffset) | |
0 | 767 { |
206
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768 boost::mutex::scoped_lock lock(mutex_); |
0 | 769 |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
770 int64_t expectedInstances; |
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starting optimization of SeriesIndex::GetSeriesStatus()
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771 const bool hasExpectedInstances = |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
772 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
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|
773 |
1006
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|
774 instanceMetadata.clear(); |
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changeset
|
775 |
4506
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|
776 DicomInstanceHasher hasher(dicomSummary); |
4505
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diff
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777 const std::string hashPatient = hasher.HashPatient(); |
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778 const std::string hashStudy = hasher.HashStudy(); |
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779 const std::string hashSeries = hasher.HashSeries(); |
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changeset
|
780 const std::string hashInstance = hasher.HashInstance(); |
3080
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781 |
0 | 782 try |
783 { | |
278
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diff
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|
784 Transaction t(*this); |
0 | 785 |
3080
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|
786 IDatabaseWrapper::CreateInstanceResult status; |
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changeset
|
787 int64_t instanceId; |
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|
788 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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changeset
|
789 // Check whether this instance is already stored |
3080
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started refactoring of ServerIndex::Store()
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|
790 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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|
791 hashStudy, hashSeries, hashInstance)) |
0 | 792 { |
3082
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793 // The instance already exists |
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|
794 |
3813
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|
795 if (overwrite) |
3082
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|
796 { |
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797 // Overwrite the old instance |
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changeset
|
798 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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|
799 db_.DeleteResource(instanceId); |
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800 |
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changeset
|
801 // Re-create the instance, now that the old one is removed |
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|
802 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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|
803 hashStudy, hashSeries, hashInstance)) |
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|
804 { |
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diff
changeset
|
805 throw OrthancException(ErrorCode_InternalError); |
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changeset
|
806 } |
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|
807 } |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
808 else |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
810 // Do nothing if the instance already exists and overwriting is disabled |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
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|
811 db_.GetAllMetadata(instanceMetadata, instanceId); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
812 return StoreStatus_AlreadyStored; |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
813 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
814 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
815 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
816 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
817 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
818 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
819 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
820 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
821 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
822 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
823 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
824 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
825 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
826 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
827 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
828 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
829 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 830 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
831 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
832 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
833 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
834 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
835 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
836 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
837 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
838 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
839 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
840 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
841 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
842 |
268
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
843 // Ensure there is enough room in the storage for the new instance |
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preparing ServerIndex for recycling
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264
diff
changeset
|
844 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
845 for (Attachments::const_iterator it = attachments.begin(); |
656 | 846 it != attachments.end(); ++it) |
268
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
847 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
848 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
849 } |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
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diff
changeset
|
850 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
851 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
852 |
74e3e48aa9bd
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parents:
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diff
changeset
|
853 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
854 // Attach the files to the newly created instance |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
855 for (Attachments::const_iterator it = attachments.begin(); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
856 it != attachments.end(); ++it) |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
857 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
858 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
859 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
860 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
861 |
0 | 862 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
863 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
864 |
3086
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grouping the setting of metadata
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parents:
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diff
changeset
|
865 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
866 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
867 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
868 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
869 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
870 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
871 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
872 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
873 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
874 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
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|
875 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
876 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
877 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
878 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
879 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
880 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
881 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
882 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
883 |
3086
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diff
changeset
|
884 |
74e3e48aa9bd
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diff
changeset
|
885 // Attach the user-specified metadata |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
886 |
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grouping the setting of metadata
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diff
changeset
|
887 for (MetadataMap::const_iterator |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
888 it = metadata.begin(); it != metadata.end(); ++it) |
74e3e48aa9bd
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diff
changeset
|
889 { |
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diff
changeset
|
890 switch (it->first.first) |
74e3e48aa9bd
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diff
changeset
|
891 { |
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diff
changeset
|
892 case ResourceType_Patient: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
893 content.AddMetadata(status.patientId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
894 break; |
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diff
changeset
|
895 |
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
896 case ResourceType_Study: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
897 content.AddMetadata(status.studyId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
898 break; |
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parents:
3083
diff
changeset
|
899 |
74e3e48aa9bd
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diff
changeset
|
900 case ResourceType_Series: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
901 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
902 break; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
903 |
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
904 case ResourceType_Instance: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
905 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
906 it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
907 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
908 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
909 default: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
910 throw OrthancException(ErrorCode_ParameterOutOfRange); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
911 } |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
912 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
913 |
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
914 |
74e3e48aa9bd
grouping the setting of metadata
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3083
diff
changeset
|
915 // Attach the auto-computed metadata for the patient/study/series levels |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
916 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
917 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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3083
diff
changeset
|
918 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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3083
diff
changeset
|
919 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
920 |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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4437
diff
changeset
|
921 if (status.isNewSeries_) |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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3087
diff
changeset
|
922 { |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
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4437
diff
changeset
|
923 if (hasExpectedInstances) |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
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4437
diff
changeset
|
924 { |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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4437
diff
changeset
|
925 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
926 boost::lexical_cast<std::string>(expectedInstances)); |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
927 } |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
928 |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
929 // New in Orthanc 1.9.0 |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
930 content.AddMetadata(status.seriesId_, MetadataType_RemoteAet, |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
931 origin.GetRemoteAetC()); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
932 } |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
933 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
934 |
3086
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diff
changeset
|
935 // Attach the auto-computed metadata for the instance level, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
936 // reflecting these additions into the input metadata map |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
937 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
938 MetadataType_Instance_ReceptionDate, now); |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
939 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_RemoteAet, |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
940 origin.GetRemoteAetC()); |
3086
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grouping the setting of metadata
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parents:
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diff
changeset
|
941 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
942 EnumerationToString(origin.GetRequestOrigin())); |
ac69c9f76c71
refactoring ServerIndex::Store()
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diff
changeset
|
943 |
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refactoring ServerIndex::Store()
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changeset
|
944 |
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
945 if (hasTransferSyntax) |
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
946 { |
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
947 // New in Orthanc 1.2.0 |
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refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
948 SetInstanceMetadata(content, instanceMetadata, instanceId, |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
949 MetadataType_Instance_TransferSyntax, |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
950 GetTransferSyntaxUid(transferSyntax)); |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
951 } |
3086
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diff
changeset
|
952 |
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diff
changeset
|
953 { |
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parents:
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diff
changeset
|
954 std::string s; |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
955 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
956 if (origin.LookupRemoteIp(s)) |
3086
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
957 { |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
958 // New in Orthanc 1.4.0 |
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diff
changeset
|
959 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
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parents:
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diff
changeset
|
960 MetadataType_Instance_RemoteIp, s); |
74e3e48aa9bd
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diff
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|
961 } |
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diff
changeset
|
962 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
963 if (origin.LookupCalledAet(s)) |
3086
74e3e48aa9bd
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parents:
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diff
changeset
|
964 { |
74e3e48aa9bd
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parents:
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diff
changeset
|
965 // New in Orthanc 1.4.0 |
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parents:
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diff
changeset
|
966 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
967 MetadataType_Instance_CalledAet, s); |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
968 } |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
969 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
970 if (origin.LookupHttpUsername(s)) |
3086
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
971 { |
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parents:
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diff
changeset
|
972 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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3083
diff
changeset
|
973 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
974 MetadataType_Instance_HttpUsername, s); |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
975 } |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
976 } |
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parents:
3083
diff
changeset
|
977 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
978 if (hasPixelDataOffset) |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
979 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
980 // New in Orthanc 1.9.1 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
981 SetInstanceMetadata(content, instanceMetadata, instanceId, |
5b929e6b3c36
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
982 MetadataType_Instance_PixelDataOffset, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
983 boost::lexical_cast<std::string>(pixelDataOffset)); |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
984 } |
3086
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diff
changeset
|
985 |
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parents:
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diff
changeset
|
986 const DicomValue* value; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
987 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
988 !value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
989 !value->IsBinary()) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
990 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
991 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
992 MetadataType_Instance_SopClassUid, value->GetContent()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
993 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
994 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
995 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
996 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
997 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
998 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
999 if (!value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
1000 !value->IsBinary()) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
1001 { |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
1002 SetInstanceMetadata(content, instanceMetadata, instanceId, |
4263
61a2bedbae80
sanitize IndexInSeries (we've seen spaces there !)
Alain Mazy <alain@mazy.be>
parents:
4205
diff
changeset
|
1003 MetadataType_Instance_IndexInSeries, Toolbox::StripSpaces(value->GetContent())); |
3086
74e3e48aa9bd
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parents:
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diff
changeset
|
1004 } |
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parents:
3083
diff
changeset
|
1005 } |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
1006 |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
1007 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
1008 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
1009 } |
3086
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diff
changeset
|
1010 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1011 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
1012 // Check whether the series of this new instance is now completed |
3187
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refactoring retrieval of metadata from database
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parents:
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diff
changeset
|
1013 int64_t expectedNumberOfInstances; |
4bbadcd03966
refactoring retrieval of metadata from database
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diff
changeset
|
1014 if (ComputeExpectedNumberOfInstances(expectedNumberOfInstances, dicomSummary)) |
205
6ab754744446
logging of completed series
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diff
changeset
|
1015 { |
3187
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diff
changeset
|
1016 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_, expectedNumberOfInstances); |
4bbadcd03966
refactoring retrieval of metadata from database
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3174
diff
changeset
|
1017 if (seriesStatus == SeriesStatus_Complete) |
4bbadcd03966
refactoring retrieval of metadata from database
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parents:
3174
diff
changeset
|
1018 { |
4bbadcd03966
refactoring retrieval of metadata from database
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parents:
3174
diff
changeset
|
1019 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
4bbadcd03966
refactoring retrieval of metadata from database
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parents:
3174
diff
changeset
|
1020 } |
205
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logging of completed series
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parents:
204
diff
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|
1021 } |
3087 | 1022 |
205
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logging of completed series
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diff
changeset
|
1023 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1024 // Mark the parent resources of this instance as unstable |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
1025 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
1026 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
1027 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1028 |
278
771f12042be9
more efficient determination of storage size for recycling
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273
diff
changeset
|
1029 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
1030 |
0 | 1031 return StoreStatus_Success; |
1032 } | |
62 | 1033 catch (OrthancException& e) |
0 | 1034 { |
1247 | 1035 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 1036 } |
1037 | |
1038 return StoreStatus_Failure; | |
1039 } | |
1040 | |
1041 | |
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1042 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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parents:
3105
diff
changeset
|
1043 /* out */ uint64_t& uncompressedSize, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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parents:
3105
diff
changeset
|
1044 /* out */ uint64_t& countPatients, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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parents:
3105
diff
changeset
|
1045 /* out */ uint64_t& countStudies, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1046 /* out */ uint64_t& countSeries, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
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|
1047 /* out */ uint64_t& countInstances) |
0 | 1048 { |
206
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1049 boost::mutex::scoped_lock lock(mutex_); |
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1050 diskSize = db_.GetTotalCompressedSize(); |
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1051 uncompressedSize = db_.GetTotalUncompressedSize(); |
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1052 countPatients = db_.GetResourceCount(ResourceType_Patient); |
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1053 countStudies = db_.GetResourceCount(ResourceType_Study); |
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1054 countSeries = db_.GetResourceCount(ResourceType_Series); |
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1055 countInstances = db_.GetResourceCount(ResourceType_Instance); |
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1056 } |
187
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1057 |
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1058 |
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1059 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id, |
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1060 int64_t expectedNumberOfInstances) |
199 | 1061 { |
3091
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1062 std::list<std::string> values; |
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1063 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries); |
199 | 1064 |
1238 | 1065 std::set<int64_t> instances; |
3091
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1066 |
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1067 for (std::list<std::string>::const_iterator |
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1068 it = values.begin(); it != values.end(); ++it) |
199 | 1069 { |
1238 | 1070 int64_t index; |
3091
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1071 |
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1072 try |
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1073 { |
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1074 index = boost::lexical_cast<int64_t>(*it); |
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1075 } |
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1076 catch (boost::bad_lexical_cast&) |
199 | 1077 { |
1078 return SeriesStatus_Unknown; | |
1079 } | |
3091
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1080 |
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1081 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1082 { |
1083 // Out-of-range instance index | |
1084 return SeriesStatus_Inconsistent; | |
1085 } | |
1086 | |
1087 if (instances.find(index) != instances.end()) | |
1088 { | |
1089 // Twice the same instance index | |
1090 return SeriesStatus_Inconsistent; | |
1091 } | |
1092 | |
1093 instances.insert(index); | |
1094 } | |
1095 | |
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1096 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1097 { |
1098 return SeriesStatus_Complete; | |
1099 } | |
1100 else | |
1101 { | |
1102 return SeriesStatus_Missing; | |
1103 } | |
1104 } | |
1105 | |
1106 | |
202 | 1107 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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1108 int64_t resourceId, |
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1109 ResourceType resourceType) |
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1110 { |
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1111 DicomMap tags; |
1247 | 1112 db_.GetMainDicomTags(tags, resourceId); |
1676
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1113 |
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1114 if (resourceType == ResourceType_Study) |
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1115 { |
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1116 DicomMap t1, t2; |
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1117 tags.ExtractStudyInformation(t1); |
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1118 tags.ExtractPatientInformation(t2); |
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1119 |
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1120 target["MainDicomTags"] = Json::objectValue; |
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|
1121 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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|
1122 |
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1123 target["PatientMainDicomTags"] = Json::objectValue; |
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|
1124 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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|
1125 } |
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|
1126 else |
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|
1127 { |
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|
1128 target["MainDicomTags"] = Json::objectValue; |
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|
1129 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1130 } |
198
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1131 } |
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1132 |
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1133 |
198
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1134 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1135 const std::string& publicId, |
1136 ResourceType expectedType) | |
198
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1137 { |
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1138 result = Json::objectValue; |
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1139 |
206
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1140 boost::mutex::scoped_lock lock(mutex_); |
199 | 1141 |
198
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1142 // Lookup for the requested resource |
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1143 int64_t id; |
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1144 ResourceType type; |
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|
1145 std::string parent; |
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|
1146 if (!db_.LookupResourceAndParent(id, type, parent, publicId) || |
199 | 1147 type != expectedType) |
198
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1148 { |
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1149 return false; |
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1150 } |
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1151 |
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1152 // Set information about the parent resource (if it exists) |
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1153 if (type == ResourceType_Patient) |
198
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1154 { |
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|
1155 if (!parent.empty()) |
198
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1156 { |
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|
1157 throw OrthancException(ErrorCode_DatabasePlugin); |
198
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1158 } |
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1159 } |
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|
1160 else |
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|
1161 { |
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1162 if (parent.empty()) |
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1163 { |
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|
1164 throw OrthancException(ErrorCode_DatabasePlugin); |
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1165 } |
198
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1166 |
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1167 switch (type) |
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1168 { |
269
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1169 case ResourceType_Study: |
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1170 result["ParentPatient"] = parent; |
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1171 break; |
198
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1172 |
269
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1173 case ResourceType_Series: |
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1174 result["ParentStudy"] = parent; |
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1175 break; |
198
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1176 |
269
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1177 case ResourceType_Instance: |
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1178 result["ParentSeries"] = parent; |
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1179 break; |
198
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1180 |
269
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1181 default: |
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1182 throw OrthancException(ErrorCode_InternalError); |
198
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1183 } |
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1184 } |
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1185 |
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1186 // List the children resources |
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1187 std::list<std::string> children; |
1247 | 1188 db_.GetChildrenPublicId(children, id); |
198
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1189 |
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1190 if (type != ResourceType_Instance) |
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1191 { |
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1192 Json::Value c = Json::arrayValue; |
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1193 |
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1194 for (std::list<std::string>::const_iterator |
656 | 1195 it = children.begin(); it != children.end(); ++it) |
198
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changeset
|
1196 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1197 c.append(*it); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1198 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1199 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1200 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1201 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1202 case ResourceType_Patient: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1203 result["Studies"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1204 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1205 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1206 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1207 result["Series"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1208 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1209 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1210 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1211 result["Instances"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1212 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1213 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1214 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1215 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1216 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1217 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1218 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1219 // Extract the metadata |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1220 std::map<MetadataType, std::string> metadata; |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1221 db_.GetAllMetadata(metadata, id); |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1222 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1223 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1224 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1225 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1226 case ResourceType_Patient: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1227 result["Type"] = "Patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1228 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1229 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1230 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1231 result["Type"] = "Study"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1232 break; |
199 | 1233 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1234 case ResourceType_Series: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1235 { |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1236 result["Type"] = "Series"; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1237 |
1238 | 1238 int64_t i; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1239 if (LookupIntegerMetadata(i, metadata, MetadataType_Series_ExpectedNumberOfInstances)) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1240 { |
1238 | 1241 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1242 result["Status"] = EnumerationToString(GetSeriesStatus(id, i)); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1243 } |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1244 else |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1245 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1246 result["ExpectedNumberOfInstances"] = Json::nullValue; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1247 result["Status"] = EnumerationToString(SeriesStatus_Unknown); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1248 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1249 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1250 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1251 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1252 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1253 case ResourceType_Instance: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1254 { |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1255 result["Type"] = "Instance"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1256 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1257 FileInfo attachment; |
1247 | 1258 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1259 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1260 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1261 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1262 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1263 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1264 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1265 |
1238 | 1266 int64_t i; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1267 if (LookupIntegerMetadata(i, metadata, MetadataType_Instance_IndexInSeries)) |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1268 { |
1238 | 1269 result["IndexInSeries"] = static_cast<int>(i); |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1270 } |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1271 else |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1272 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1273 result["IndexInSeries"] = Json::nullValue; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1274 } |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1275 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1276 break; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1277 } |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1278 |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1279 default: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1280 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1281 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1282 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1283 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1284 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1285 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1286 |
315 | 1287 std::string tmp; |
1288 | |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1289 if (LookupStringMetadata(tmp, metadata, MetadataType_AnonymizedFrom)) |
1236 | 1290 { |
315 | 1291 result["AnonymizedFrom"] = tmp; |
1236 | 1292 } |
315 | 1293 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1294 if (LookupStringMetadata(tmp, metadata, MetadataType_ModifiedFrom)) |
1236 | 1295 { |
315 | 1296 result["ModifiedFrom"] = tmp; |
1236 | 1297 } |
315 | 1298 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1299 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1300 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1301 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1302 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1303 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1304 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1305 if (LookupStringMetadata(tmp, metadata, MetadataType_LastUpdate)) |
1236 | 1306 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1307 result["LastUpdate"] = tmp; |
1236 | 1308 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1309 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1310 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1311 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1312 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1313 |
0 | 1314 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1315 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1316 const std::string& instanceUuid, |
233 | 1317 FileContentType contentType) |
0 | 1318 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1319 boost::mutex::scoped_lock lock(mutex_); |
0 | 1320 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1321 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1322 ResourceType type; |
1294 | 1323 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1324 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1325 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1326 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1327 |
1247 | 1328 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1329 { |
233 | 1330 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1331 return true; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1332 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1333 else |
5368bbe813cf
refactoring of attachments
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diff
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|
1334 { |
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diff
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|
1335 return false; |
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|
1336 } |
192
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diff
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|
1337 } |
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|
1338 |
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diff
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|
1339 |
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|
1340 |
1354 | 1341 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1342 ResourceType resourceType) |
0 | 1343 { |
1357 | 1344 boost::mutex::scoped_lock lock(mutex_); |
1345 db_.GetAllPublicIds(target, resourceType); | |
0 | 1346 } |
1347 | |
1348 | |
1509
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
1349 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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|
1350 ResourceType resourceType, |
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diff
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|
1351 size_t since, |
0586ed8897f1
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diff
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|
1352 size_t limit) |
0586ed8897f1
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diff
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|
1353 { |
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limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1354 if (limit == 0) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1355 { |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
1356 target.clear(); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
1357 return; |
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diff
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|
1358 } |
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|
1359 |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1360 boost::mutex::scoped_lock lock(mutex_); |
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|
1361 db_.GetAllPublicIds(target, resourceType, since, limit); |
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|
1362 } |
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|
1363 |
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|
1364 |
1244 | 1365 template <typename T> |
1366 static void FormatLog(Json::Value& target, | |
1367 const std::list<T>& log, | |
1368 const std::string& name, | |
1369 bool done, | |
3105
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|
1370 int64_t since, |
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|
1371 bool hasLast, |
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|
1372 int64_t last) |
1240 | 1373 { |
1374 Json::Value items = Json::arrayValue; | |
1244 | 1375 for (typename std::list<T>::const_iterator |
1304 | 1376 it = log.begin(); it != log.end(); ++it) |
1240 | 1377 { |
1378 Json::Value item; | |
1379 it->Format(item); | |
1380 items.append(item); | |
1381 } | |
1382 | |
1383 target = Json::objectValue; | |
1244 | 1384 target[name] = items; |
1240 | 1385 target["Done"] = done; |
1386 | |
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|
1387 if (!hasLast) |
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|
1388 { |
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|
1389 // Best-effort guess of the last index in the sequence |
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|
1390 if (log.empty()) |
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|
1391 { |
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|
1392 last = since; |
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1393 } |
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1394 else |
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1395 { |
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|
1396 last = log.back().GetSeq(); |
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1397 } |
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1398 } |
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|
1399 |
1240 | 1400 target["Last"] = static_cast<int>(last); |
1401 } | |
1402 | |
1403 | |
1247 | 1404 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1405 int64_t since, |
0 | 1406 unsigned int maxResults) |
1407 { | |
1240 | 1408 std::list<ServerIndexChange> changes; |
1409 bool done; | |
3105
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|
1410 bool hasLast = false; |
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|
1411 int64_t last = 0; |
1240 | 1412 |
1413 { | |
1414 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1415 |
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|
1416 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1417 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1418 Transaction transaction(*this); |
3105
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|
1419 |
1247 | 1420 db_.GetChanges(changes, done, since, maxResults); |
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1421 if (changes.empty()) |
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1422 { |
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1423 last = db_.GetLastChangeIndex(); |
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1424 hasLast = true; |
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1425 } |
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1426 |
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1427 transaction.Commit(0); |
1240 | 1428 } |
1429 | |
3105
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1430 FormatLog(target, changes, "Changes", done, since, hasLast, last); |
237
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diff
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1431 } |
0 | 1432 |
1240 | 1433 |
1247 | 1434 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1435 { |
1240 | 1436 std::list<ServerIndexChange> changes; |
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|
1437 bool hasLast = false; |
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|
1438 int64_t last = 0; |
1240 | 1439 |
1440 { | |
1441 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1442 |
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1443 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1444 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1445 Transaction transaction(*this); |
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1446 |
1247 | 1447 db_.GetLastChange(changes); |
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1448 if (changes.empty()) |
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1449 { |
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1450 last = db_.GetLastChangeIndex(); |
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1451 hasLast = true; |
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1452 } |
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1453 |
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|
1454 transaction.Commit(0); |
1240 | 1455 } |
1456 | |
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|
1457 FormatLog(target, changes, "Changes", true, 0, hasLast, last); |
0 | 1458 } |
231 | 1459 |
1240 | 1460 |
231 | 1461 void ServerIndex::LogExportedResource(const std::string& publicId, |
1462 const std::string& remoteModality) | |
1463 { | |
1464 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1465 Transaction transaction(*this); |
231 | 1466 |
1467 int64_t id; | |
1468 ResourceType type; | |
1294 | 1469 if (!db_.LookupResource(id, type, publicId)) |
231 | 1470 { |
2573
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1471 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1472 } |
1473 | |
1474 std::string patientId; | |
1475 std::string studyInstanceUid; | |
1476 std::string seriesInstanceUid; | |
1477 std::string sopInstanceUid; | |
1478 | |
1479 int64_t currentId = id; | |
1480 ResourceType currentType = type; | |
1481 | |
1482 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1483 bool done = false; | |
1484 while (!done) | |
1485 { | |
1486 DicomMap map; | |
1247 | 1487 db_.GetMainDicomTags(map, currentId); |
231 | 1488 |
1489 switch (currentType) | |
1490 { | |
269
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1491 case ResourceType_Patient: |
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1492 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1493 { |
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1494 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1495 } |
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1496 done = true; |
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1497 break; |
231 | 1498 |
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1499 case ResourceType_Study: |
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1500 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1501 { |
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1502 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1503 } |
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1504 currentType = ResourceType_Patient; |
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1505 break; |
231 | 1506 |
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1507 case ResourceType_Series: |
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1508 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1509 { |
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1510 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1511 } |
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1512 currentType = ResourceType_Study; |
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1513 break; |
231 | 1514 |
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1515 case ResourceType_Instance: |
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|
1516 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1517 { |
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|
1518 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1519 } |
269
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1520 currentType = ResourceType_Series; |
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1521 break; |
231 | 1522 |
269
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1523 default: |
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1524 throw OrthancException(ErrorCode_InternalError); |
231 | 1525 } |
1526 | |
1527 // If we have not reached the Patient level, find the parent of | |
1528 // the current resource | |
1529 if (!done) | |
1530 { | |
1247 | 1531 bool ok = db_.LookupParent(currentId, currentId); |
4121 | 1532 (void) ok; // Remove warning about unused variable in release builds |
375
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1533 assert(ok); |
231 | 1534 } |
1535 } | |
1536 | |
1246 | 1537 ExportedResource resource(-1, |
1538 type, | |
1539 publicId, | |
1540 remoteModality, | |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
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diff
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|
1541 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1542 patientId, |
1543 studyInstanceUid, | |
1544 seriesInstanceUid, | |
1545 sopInstanceUid); | |
1310
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1546 |
1247 | 1547 db_.LogExportedResource(resource); |
1310
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|
1548 transaction.Commit(0); |
231 | 1549 } |
1550 | |
1551 | |
1247 | 1552 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1553 int64_t since, |
1554 unsigned int maxResults) | |
1555 { | |
1244 | 1556 std::list<ExportedResource> exported; |
1557 bool done; | |
1558 | |
1559 { | |
1560 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1561 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1562 } |
1563 | |
3105
2e1711f80f74
More consistent handling of the "Last" field returned by the "/changes" URI
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diff
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|
1564 FormatLog(target, exported, "Exports", done, since, false, -1); |
231 | 1565 } |
237
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1566 |
1244 | 1567 |
1247 | 1568 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1569 { |
1244 | 1570 std::list<ExportedResource> exported; |
1571 | |
1572 { | |
1573 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1574 db_.GetLastExportedResource(exported); |
1244 | 1575 } |
1576 | |
3105
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More consistent handling of the "Last" field returned by the "/changes" URI
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|
1577 FormatLog(target, exported, "Exports", true, 0, false, -1); |
237
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1578 } |
268
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1579 |
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1580 |
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1581 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1582 { |
269
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1583 if (maximumStorageSize_ != 0) |
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1584 { |
3020
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|
1585 assert(maximumStorageSize_ >= instanceSize); |
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|
1586 |
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1587 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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1588 { |
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1589 return true; |
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1590 } |
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1591 } |
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1592 |
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1593 if (maximumPatients_ != 0) |
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1594 { |
1247 | 1595 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1596 if (patientCount > maximumPatients_) |
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1597 { |
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1598 return true; |
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1599 } |
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1600 } |
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1601 |
268
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1602 return false; |
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1603 } |
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1604 |
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1605 |
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1606 void ServerIndex::Recycle(uint64_t instanceSize, |
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1607 const std::string& newPatientId) |
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1608 { |
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1609 if (!IsRecyclingNeeded(instanceSize)) |
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1610 { |
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|
1611 return; |
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1612 } |
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1613 |
269
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1614 // Check whether other DICOM instances from this patient are |
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1615 // already stored |
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|
1616 int64_t patientToAvoid; |
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|
1617 ResourceType type; |
1294 | 1618 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1619 |
269
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1620 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1621 { |
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1622 throw OrthancException(ErrorCode_InternalError); |
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1623 } |
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1624 |
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1625 // Iteratively select patient to remove until there is enough |
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1626 // space in the DICOM store |
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1627 int64_t patientToRecycle; |
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1628 while (true) |
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|
1629 { |
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1630 // If other instances of this patient are already in the store, |
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1631 // we must avoid to recycle them |
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|
1632 bool ok = hasPatientToAvoid ? |
1247 | 1633 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1634 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1635 |
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1636 if (!ok) |
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1637 { |
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1638 throw OrthancException(ErrorCode_FullStorage); |
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1639 } |
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1640 |
4268
0ae2ca210077
new macro TLOG() to replace VLOG() for trace logs with a category
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diff
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|
1641 LOG(TRACE) << "Recycling one patient"; |
1247 | 1642 db_.DeleteResource(patientToRecycle); |
269
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1643 |
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1644 if (!IsRecyclingNeeded(instanceSize)) |
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1645 { |
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1646 // OK, we're done |
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1647 break; |
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1648 } |
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1649 } |
268
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1650 } |
269
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1651 |
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1652 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1653 { |
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1654 boost::mutex::scoped_lock lock(mutex_); |
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1655 maximumPatients_ = count; |
270
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1656 |
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1657 if (count == 0) |
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1658 { |
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1659 LOG(WARNING) << "No limit on the number of stored patients"; |
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1660 } |
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1661 else |
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|
1662 { |
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1663 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1664 } |
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1665 |
269
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|
1666 StandaloneRecycling(); |
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1667 } |
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1668 |
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1669 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1670 { |
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1671 boost::mutex::scoped_lock lock(mutex_); |
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1672 maximumStorageSize_ = size; |
270
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1673 |
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1674 if (size == 0) |
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|
1675 { |
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1676 LOG(WARNING) << "No limit on the size of the storage area"; |
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1677 } |
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1678 else |
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1679 { |
440
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1680 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1681 } |
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1682 |
269
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1683 StandaloneRecycling(); |
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1684 } |
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1685 |
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1686 |
272
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1687 void ServerIndex::StandaloneRecycling() |
269
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1688 { |
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1689 // WARNING: No mutex here, do not include this as a public method |
278
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1690 Transaction t(*this); |
269
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1691 Recycle(0, ""); |
278
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1692 t.Commit(0); |
269
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1693 } |
272
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1694 |
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1695 |
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1696 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1697 { |
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1698 boost::mutex::scoped_lock lock(mutex_); |
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1699 |
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1700 // Lookup for the requested resource |
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1701 int64_t id; |
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1702 ResourceType type; |
1294 | 1703 if (!db_.LookupResource(id, type, publicId) || |
272
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1704 type != ResourceType_Patient) |
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1705 { |
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1706 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1707 } |
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1708 |
1247 | 1709 return db_.IsProtectedPatient(id); |
272
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1710 } |
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1711 |
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1712 |
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1713 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1714 bool isProtected) |
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1715 { |
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1716 boost::mutex::scoped_lock lock(mutex_); |
1310
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1717 Transaction transaction(*this); |
272
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1718 |
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1719 // Lookup for the requested resource |
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1720 int64_t id; |
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1721 ResourceType type; |
1294 | 1722 if (!db_.LookupResource(id, type, publicId) || |
272
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1723 type != ResourceType_Patient) |
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1724 { |
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1725 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1726 } |
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1727 |
1247 | 1728 db_.SetProtectedPatient(id, isProtected); |
1310
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1729 transaction.Commit(0); |
272
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1730 |
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1731 if (isProtected) |
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1732 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1733 else |
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1734 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1735 } |
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1736 |
304 | 1737 |
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1738 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1739 const std::string& publicId) |
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1740 { |
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1741 result.clear(); |
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1742 |
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1743 boost::mutex::scoped_lock lock(mutex_); |
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1744 |
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1745 ResourceType type; |
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1746 int64_t resource; |
1294 | 1747 if (!db_.LookupResource(resource, type, publicId)) |
714
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1748 { |
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1749 throw OrthancException(ErrorCode_UnknownResource); |
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1750 } |
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1751 |
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1752 if (type == ResourceType_Instance) |
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1753 { |
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1754 // An instance cannot have a child |
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1755 throw OrthancException(ErrorCode_BadParameterType); |
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1756 } |
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1757 |
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1758 std::list<int64_t> tmp; |
1247 | 1759 db_.GetChildrenInternalId(tmp, resource); |
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1760 |
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1761 for (std::list<int64_t>::const_iterator |
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1762 it = tmp.begin(); it != tmp.end(); ++it) |
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1763 { |
1247 | 1764 result.push_back(db_.GetPublicId(*it)); |
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1765 } |
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1766 } |
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1767 |
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1768 |
304 | 1769 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1770 const std::string& publicId) | |
1771 { | |
1772 result.clear(); | |
1773 | |
1774 boost::mutex::scoped_lock lock(mutex_); | |
1775 | |
1776 ResourceType type; | |
1777 int64_t top; | |
1294 | 1778 if (!db_.LookupResource(top, type, publicId)) |
304 | 1779 { |
1780 throw OrthancException(ErrorCode_UnknownResource); | |
1781 } | |
1782 | |
1783 if (type == ResourceType_Instance) | |
1784 { | |
1785 // The resource is already an instance: Do not go down the hierarchy | |
1786 result.push_back(publicId); | |
1787 return; | |
1788 } | |
1789 | |
1790 std::stack<int64_t> toExplore; | |
1791 toExplore.push(top); | |
1792 | |
1793 std::list<int64_t> tmp; | |
1794 | |
1795 while (!toExplore.empty()) | |
1796 { | |
1797 // Get the internal ID of the current resource | |
1798 int64_t resource = toExplore.top(); | |
1799 toExplore.pop(); | |
1800 | |
1247 | 1801 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1802 { |
1247 | 1803 result.push_back(db_.GetPublicId(resource)); |
304 | 1804 } |
1805 else | |
1806 { | |
1807 // Tag all the children of this resource as to be explored | |
1247 | 1808 db_.GetChildrenInternalId(tmp, resource); |
304 | 1809 for (std::list<int64_t>::const_iterator |
656 | 1810 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1811 { |
1812 toExplore.push(*it); | |
1813 } | |
1814 } | |
1815 } | |
1816 } | |
1817 | |
306
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1818 |
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1819 void ServerIndex::SetMetadata(const std::string& publicId, |
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1820 MetadataType type, |
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1821 const std::string& value) |
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1822 { |
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1823 boost::mutex::scoped_lock lock(mutex_); |
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1824 Transaction t(*this); |
306
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1825 |
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1826 ResourceType rtype; |
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1827 int64_t id; |
1294 | 1828 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1829 { |
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1830 throw OrthancException(ErrorCode_UnknownResource); |
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1831 } |
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1832 |
1247 | 1833 db_.SetMetadata(id, type, value); |
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1834 |
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1835 if (IsUserMetadata(type)) |
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1836 { |
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1837 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1838 } |
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1839 |
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1840 t.Commit(0); |
306
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1841 } |
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1842 |
438 | 1843 |
1844 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1845 MetadataType type) | |
1846 { | |
1847 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1848 Transaction t(*this); |
438 | 1849 |
1850 ResourceType rtype; | |
1851 int64_t id; | |
1294 | 1852 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1853 { |
1854 throw OrthancException(ErrorCode_UnknownResource); | |
1855 } | |
1856 | |
1247 | 1857 db_.DeleteMetadata(id, type); |
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1858 |
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1859 if (IsUserMetadata(type)) |
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1860 { |
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1861 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1862 } |
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1863 |
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1864 t.Commit(0); |
438 | 1865 } |
1866 | |
1867 | |
306
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1868 bool ServerIndex::LookupMetadata(std::string& target, |
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1869 const std::string& publicId, |
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1870 ResourceType expectedType, |
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1871 MetadataType type) |
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1872 { |
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1873 boost::mutex::scoped_lock lock(mutex_); |
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1874 |
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1875 ResourceType rtype; |
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1876 int64_t id; |
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1877 if (!db_.LookupResource(id, rtype, publicId) || |
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1878 rtype != expectedType) |
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1879 { |
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1880 throw OrthancException(ErrorCode_UnknownResource); |
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1881 } |
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1882 |
1247 | 1883 return db_.LookupMetadata(target, id, type); |
306
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1884 } |
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1885 |
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1886 |
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1887 void ServerIndex::GetAllMetadata(std::map<MetadataType, std::string>& target, |
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1888 const std::string& publicId, |
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1889 ResourceType expectedType) |
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1890 { |
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1891 boost::mutex::scoped_lock lock(mutex_); |
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1892 |
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1893 ResourceType type; |
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1894 int64_t id; |
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1895 if (!db_.LookupResource(id, type, publicId) || |
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1896 expectedType != type) |
436
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1897 { |
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1898 throw OrthancException(ErrorCode_UnknownResource); |
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1899 } |
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1900 |
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1901 return db_.GetAllMetadata(target, id); |
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1902 } |
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1903 |
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1904 |
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1905 void ServerIndex::ListAvailableAttachments(std::set<FileContentType>& target, |
697
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1906 const std::string& publicId, |
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1907 ResourceType expectedType) |
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1908 { |
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1909 boost::mutex::scoped_lock lock(mutex_); |
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1910 |
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1911 ResourceType type; |
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1912 int64_t id; |
1294 | 1913 if (!db_.LookupResource(id, type, publicId) || |
697
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1914 expectedType != type) |
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1915 { |
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1916 throw OrthancException(ErrorCode_UnknownResource); |
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1917 } |
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1918 |
1247 | 1919 db_.ListAvailableAttachments(target, id); |
697
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1920 } |
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1921 |
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1922 |
306
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1923 bool ServerIndex::LookupParent(std::string& target, |
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1924 const std::string& publicId) |
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1925 { |
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1926 boost::mutex::scoped_lock lock(mutex_); |
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1927 |
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1928 ResourceType type; |
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1929 int64_t id; |
1294 | 1930 if (!db_.LookupResource(id, type, publicId)) |
306
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1931 { |
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1932 throw OrthancException(ErrorCode_UnknownResource); |
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1933 } |
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1934 |
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1935 int64_t parentId; |
1247 | 1936 if (db_.LookupParent(parentId, id)) |
306
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1937 { |
1247 | 1938 target = db_.GetPublicId(parentId); |
306
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1939 return true; |
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1940 } |
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1941 else |
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1942 { |
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1943 return false; |
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1944 } |
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1945 } |
310 | 1946 |
1947 | |
1948 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1949 { | |
1950 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1951 Transaction transaction(*this); |
311 | 1952 |
1237 | 1953 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1954 transaction.Commit(0); |
311 | 1955 |
1956 return seq; | |
310 | 1957 } |
315 | 1958 |
1959 | |
1960 | |
1961 void ServerIndex::LogChange(ChangeType changeType, | |
1962 const std::string& publicId) | |
1963 { | |
1964 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1965 Transaction transaction(*this); |
315 | 1966 |
1967 int64_t id; | |
1968 ResourceType type; | |
1294 | 1969 if (!db_.LookupResource(id, type, publicId)) |
315 | 1970 { |
1971 throw OrthancException(ErrorCode_UnknownResource); | |
1972 } | |
1973 | |
1237 | 1974 LogChange(id, changeType, type, publicId); |
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1975 transaction.Commit(0); |
315 | 1976 } |
413
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1977 |
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|
1978 |
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1979 void ServerIndex::DeleteChanges() |
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1980 { |
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|
1981 boost::mutex::scoped_lock lock(mutex_); |
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1982 |
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1983 Transaction transaction(*this); |
1286 | 1984 db_.ClearChanges(); |
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1985 transaction.Commit(0); |
413
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1986 } |
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|
1987 |
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1988 void ServerIndex::DeleteExportedResources() |
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1989 { |
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|
1990 boost::mutex::scoped_lock lock(mutex_); |
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1991 |
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1992 Transaction transaction(*this); |
1286 | 1993 db_.ClearExportedResources(); |
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1994 transaction.Commit(0); |
413
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|
1995 } |
440
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1996 |
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1997 |
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1998 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type, |
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1999 /* out */ uint64_t& diskSize, |
646 | 2000 /* out */ uint64_t& uncompressedSize, |
2001 /* out */ unsigned int& countStudies, | |
2002 /* out */ unsigned int& countSeries, | |
2003 /* out */ unsigned int& countInstances, | |
2987
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2004 /* out */ uint64_t& dicomDiskSize, |
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|
2005 /* out */ uint64_t& dicomUncompressedSize, |
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2006 const std::string& publicId) |
440
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|
2007 { |
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2008 boost::mutex::scoped_lock lock(mutex_); |
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2009 |
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2010 int64_t top; |
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2011 if (!db_.LookupResource(top, type, publicId)) |
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2012 { |
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2013 throw OrthancException(ErrorCode_UnknownResource); |
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|
2014 } |
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2015 |
646 | 2016 std::stack<int64_t> toExplore; |
3174
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2017 toExplore.push(top); |
440
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2018 |
646 | 2019 countInstances = 0; |
2020 countSeries = 0; | |
2021 countStudies = 0; | |
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2022 diskSize = 0; |
646 | 2023 uncompressedSize = 0; |
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2024 dicomDiskSize = 0; |
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2025 dicomUncompressedSize = 0; |
440
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2026 |
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2027 while (!toExplore.empty()) |
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2028 { |
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2029 // Get the internal ID of the current resource |
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2030 int64_t resource = toExplore.top(); |
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2031 toExplore.pop(); |
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2032 |
1247 | 2033 ResourceType thisType = db_.GetResourceType(resource); |
440
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2034 |
4514
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|
2035 std::set<FileContentType> f; |
1247 | 2036 db_.ListAvailableAttachments(f, resource); |
702
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2037 |
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2038 for (std::set<FileContentType>::const_iterator |
702
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2039 it = f.begin(); it != f.end(); ++it) |
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|
2040 { |
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2041 FileInfo attachment; |
1247 | 2042 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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|
2043 { |
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|
2044 if (attachment.GetContentType() == FileContentType_Dicom) |
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2045 { |
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2046 dicomDiskSize += attachment.GetCompressedSize(); |
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|
2047 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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|
2048 } |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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|
2049 |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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|
2050 diskSize += attachment.GetCompressedSize(); |
702
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|
2051 uncompressedSize += attachment.GetUncompressedSize(); |
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2052 } |
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|
2053 } |
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|
2054 |
440
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|
2055 if (thisType == ResourceType_Instance) |
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|
2056 { |
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2057 countInstances++; |
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2058 } |
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2059 else |
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|
2060 { |
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|
2061 switch (thisType) |
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2062 { |
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|
2063 case ResourceType_Study: |
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2064 countStudies++; |
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2065 break; |
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|
2066 |
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|
2067 case ResourceType_Series: |
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2068 countSeries++; |
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2069 break; |
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2070 |
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2071 default: |
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2072 break; |
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|
2073 } |
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2074 |
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2075 // Tag all the children of this resource as to be explored |
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2076 std::list<int64_t> tmp; |
1247 | 2077 db_.GetChildrenInternalId(tmp, resource); |
440
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changeset
|
2078 for (std::list<int64_t>::const_iterator |
656 | 2079 it = tmp.begin(); it != tmp.end(); ++it) |
440
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|
2080 { |
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|
2081 toExplore.push(*it); |
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changeset
|
2082 } |
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|
2083 } |
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changeset
|
2084 } |
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|
2085 |
646 | 2086 if (countStudies == 0) |
2087 { | |
2088 countStudies = 1; | |
2089 } | |
2090 | |
2091 if (countSeries == 0) | |
2092 { | |
2093 countSeries = 1; | |
2094 } | |
2095 } | |
2096 | |
2097 | |
2665
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2098 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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|
2099 unsigned int threadSleep) |
511
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|
2100 { |
2940
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diff
changeset
|
2101 int stableAge; |
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2102 |
4767d36679ed
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changeset
|
2103 { |
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diff
changeset
|
2104 OrthancConfiguration::ReaderLock lock; |
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changeset
|
2105 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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|
2106 } |
4767d36679ed
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diff
changeset
|
2107 |
511
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changeset
|
2108 if (stableAge <= 0) |
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changeset
|
2109 { |
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|
2110 stableAge = 60; |
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2111 } |
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2112 |
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changeset
|
2113 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2114 |
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changeset
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2115 while (!that->done_) |
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2116 { |
2665
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changeset
|
2117 // Check for stable resources each few seconds |
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changeset
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2118 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2119 |
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changeset
|
2120 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2121 |
511
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2122 while (!that->unstableResources_.IsEmpty() && |
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2123 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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changeset
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2124 { |
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2125 // This DICOM resource has not received any new instance for |
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2126 // some time. It can be considered as stable. |
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2127 |
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changeset
|
2128 UnstableResourcePayload payload; |
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changeset
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2129 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2130 |
513 | 2131 // Ensure that the resource is still existing before logging the change |
1247 | 2132 if (that->db_.IsExistingResource(id)) |
511
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2133 { |
1177
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changeset
|
2134 switch (payload.GetResourceType()) |
513 | 2135 { |
1177
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changeset
|
2136 case ResourceType_Patient: |
1237 | 2137 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2138 break; |
511
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2139 |
1177
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changeset
|
2140 case ResourceType_Study: |
1237 | 2141 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2142 break; |
511
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changeset
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2143 |
1177
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diff
changeset
|
2144 case ResourceType_Series: |
1237 | 2145 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2146 break; |
2147 | |
2148 default: | |
2149 throw OrthancException(ErrorCode_InternalError); | |
2150 } | |
2151 | |
2152 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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changeset
|
2153 } |
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2154 } |
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2155 } |
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2156 |
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|
2157 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2158 } |
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2159 |
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2160 |
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diff
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|
2161 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2162 Orthanc::ResourceType type, |
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|
2163 const std::string& publicId) |
511
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2164 { |
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|
2165 // WARNING: Before calling this method, "mutex_" must be locked. |
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2166 |
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|
2167 assert(type == Orthanc::ResourceType_Patient || |
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|
2168 type == Orthanc::ResourceType_Study || |
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|
2169 type == Orthanc::ResourceType_Series); |
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2170 |
1177
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|
2171 UnstableResourcePayload payload(type, publicId); |
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|
2172 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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diff
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|
2173 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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NewChildInstance change type
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diff
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|
2174 |
1237 | 2175 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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|
2176 } |
521 | 2177 |
2178 | |
2179 | |
3034
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diff
changeset
|
2180 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
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|
2181 ResourceType level, |
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|
2182 const DicomTag& tag, |
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rename LookupIdentifier as LookupIdentifierExact
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diff
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|
2183 const std::string& value) |
615 | 2184 { |
1727 | 2185 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2186 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2187 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2188 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2189 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2190 |
615 | 2191 result.clear(); |
2192 | |
3034
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|
2193 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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|
2194 |
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|
2195 std::vector<DatabaseConstraint> query; |
3073
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refactoring to reuse DatabaseConstraint in separate projects
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diff
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|
2196 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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|
2197 |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2198 std::list<std::string> tmp; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2199 |
3034
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|
2200 { |
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diff
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|
2201 boost::mutex::scoped_lock lock(mutex_); |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
changeset
|
2202 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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|
2203 } |
3075
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|
2204 |
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|
2205 CopyListToVector(result, tmp); |
615 | 2206 } |
2207 | |
2208 | |
699
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|
2209 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
2210 const std::string& publicId) |
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|
2211 { |
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|
2212 boost::mutex::scoped_lock lock(mutex_); |
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2213 |
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|
2214 Transaction t(*this); |
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2215 |
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|
2216 ResourceType resourceType; |
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|
2217 int64_t resourceId; |
1294 | 2218 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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|
2219 { |
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|
2220 return StoreStatus_Failure; // Inexistent resource |
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|
2221 } |
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|
2222 |
704
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|
2223 // Remove possible previous attachment |
1247 | 2224 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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|
2225 |
704
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|
2226 // Locate the patient of the target resource |
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|
2227 int64_t patientId = resourceId; |
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diff
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|
2228 for (;;) |
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|
2229 { |
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|
2230 int64_t parent; |
1247 | 2231 if (db_.LookupParent(parent, patientId)) |
704
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|
2232 { |
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|
2233 // We have not reached the patient level yet |
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|
2234 patientId = parent; |
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|
2235 } |
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|
2236 else |
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|
2237 { |
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diff
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|
2238 // We have reached the patient level |
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|
2239 break; |
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|
2240 } |
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|
2241 } |
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|
2242 |
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diff
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|
2243 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2244 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2245 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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|
2246 |
1247 | 2247 db_.AddAttachment(resourceId, attachment); |
699
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2248 |
1773
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|
2249 if (IsUserContentType(attachment.GetContentType())) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2250 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2251 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
2252 } |
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|
2253 |
699
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|
2254 t.Commit(attachment.GetCompressedSize()); |
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|
2255 |
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|
2256 return StoreStatus_Success; |
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|
2257 } |
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2258 |
702
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|
2259 |
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|
2260 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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|
2261 FileContentType type) |
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|
2262 { |
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|
2263 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
2264 Transaction t(*this); |
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|
2265 |
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changeset
|
2266 ResourceType rtype; |
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|
2267 int64_t id; |
1294 | 2268 if (!db_.LookupResource(id, rtype, publicId)) |
702
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|
2269 { |
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|
2270 throw OrthancException(ErrorCode_UnknownResource); |
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2271 } |
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|
2272 |
1247 | 2273 db_.DeleteAttachment(id, type); |
702
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2274 |
1773
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|
2275 if (IsUserContentType(type)) |
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diff
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|
2276 { |
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changeset
|
2277 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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|
2278 } |
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|
2279 |
702
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changeset
|
2280 t.Commit(0); |
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|
2281 } |
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changeset
|
2282 |
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|
2283 |
1249
40725595aaf0
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diff
changeset
|
2284 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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diff
changeset
|
2285 const std::string& value) |
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changeset
|
2286 { |
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diff
changeset
|
2287 boost::mutex::scoped_lock lock(mutex_); |
3315
8bf33fa68435
Fix missing DB transactions in some write operations
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diff
changeset
|
2288 |
8bf33fa68435
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changeset
|
2289 Transaction transaction(*this); |
1249
40725595aaf0
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diff
changeset
|
2290 db_.SetGlobalProperty(property, value); |
3315
8bf33fa68435
Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3187
diff
changeset
|
2291 transaction.Commit(0); |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2292 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2293 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2294 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2295 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2296 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2297 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2298 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2299 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2300 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2301 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2302 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2303 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2304 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2305 { |
1239 | 2306 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2307 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2308 if (LookupGlobalProperty(value, property)) |
1239 | 2309 { |
2310 return value; | |
2311 } | |
2312 else | |
2313 { | |
2314 return defaultValue; | |
2315 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2316 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2317 |
1352 | 2318 |
2319 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2320 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2321 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2322 ResourceType levelOfInterest) |
1352 | 2323 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2324 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2325 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2326 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2327 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2328 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2329 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2330 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2331 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2332 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2333 |
1352 | 2334 result.Clear(); |
2335 | |
2336 boost::mutex::scoped_lock lock(mutex_); | |
2337 | |
2338 // Lookup for the requested resource | |
2339 int64_t id; | |
2340 ResourceType type; | |
2341 if (!db_.LookupResource(id, type, publicId) || | |
2342 type != expectedType) | |
2343 { | |
2344 return false; | |
2345 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2346 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2347 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2348 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2349 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2350 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2351 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2352 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2353 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2354 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2355 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2356 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2357 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2358 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2359 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2360 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2361 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2362 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2363 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2364 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2365 } |
1352 | 2366 else |
2367 { | |
2368 db_.GetMainDicomTags(result, id); | |
2369 return true; | |
2370 } | |
2371 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2372 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2373 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2377 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2394 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2402 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2403 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2404 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2405 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2406 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2407 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2408 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2409 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2410 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2411 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2412 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2413 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2414 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2415 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2416 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2417 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2418 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2419 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2420 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2421 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2422 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2423 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2424 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2425 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2426 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2427 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2428 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2429 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2430 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2431 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2432 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2433 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2434 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2435 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2436 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2437 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2438 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2439 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2440 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2441 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2442 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2443 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2444 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2445 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2446 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2447 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2448 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2449 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2450 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2451 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2452 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2453 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2454 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2455 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2456 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2457 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2458 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2459 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2460 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2461 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2462 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2463 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2464 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2465 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2466 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2467 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2468 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2469 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2470 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2471 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2472 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2473 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2474 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2475 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2476 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2477 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2478 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2479 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2480 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2481 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2482 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2483 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2484 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2485 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2486 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2487 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2488 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2489 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2490 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2491 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2492 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 |
4205 | 2495 void ServerIndex::ReconstructInstance(const ParsedDicomFile& dicom) |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 DicomMap summary; |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
2498 OrthancConfiguration::DefaultExtractDicomSummary(summary, dicom); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2518 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2519 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2520 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2521 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2522 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2523 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2524 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2525 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2526 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2527 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2528 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2529 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2530 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2531 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2532 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2533 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2534 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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2535 } |
2209
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2536 |
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2537 { |
4507
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widening the use of DicomTransferSyntax enum
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2538 DicomTransferSyntax s; |
2209
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2539 if (dicom.LookupTransferSyntax(s)) |
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2540 { |
4507
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2541 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, GetTransferSyntaxUid(s)); |
2209
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2542 } |
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2543 } |
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2544 |
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2545 const DicomValue* value; |
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2546 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2547 !value->IsNull() && |
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2548 !value->IsBinary()) |
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2549 { |
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2550 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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2551 } |
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2552 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2553 t.Commit(0); // No change in the DB size |
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2554 } |
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2555 catch (OrthancException& e) |
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2556 { |
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2557 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
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2558 } |
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2559 } |
3025
039a9d262d64
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|
2560 |
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2561 |
3029
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2562 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2563 const DatabaseLookup& source, |
2564 ResourceType queryLevel) const | |
2565 { | |
2566 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
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2567 |
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2568 target.clear(); |
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2569 target.reserve(source.GetConstraintsCount()); |
3031 | 2570 |
3027 | 2571 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2572 { | |
3031 | 2573 ResourceType level; |
2574 DicomTagType type; | |
3027 | 2575 |
3031 | 2576 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2577 | |
2578 if (type == DicomTagType_Identifier || | |
2579 type == DicomTagType_Main) | |
3027 | 2580 { |
3029
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2581 // Use the fact that patient-level tags are copied at the study level |
3031 | 2582 if (level == ResourceType_Patient && |
2583 queryLevel != ResourceType_Patient) | |
3027 | 2584 { |
3031 | 2585 level = ResourceType_Study; |
3027 | 2586 } |
3029
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2587 |
3073
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2588 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2589 } |
2590 } | |
2591 } | |
2592 | |
2593 | |
3025
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2594 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
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2595 std::vector<std::string>* instancesId, |
3025
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2596 const DatabaseLookup& lookup, |
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2597 ResourceType queryLevel, |
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2598 size_t limit) |
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2599 { |
3029
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2600 std::vector<DatabaseConstraint> normalized; |
3027 | 2601 NormalizeLookup(normalized, lookup, queryLevel); |
2602 | |
3075
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2603 std::list<std::string> resourcesList, instancesList; |
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2604 |
3027 | 2605 { |
2606 boost::mutex::scoped_lock lock(mutex_); | |
3075
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2607 |
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2608 if (instancesId == NULL) |
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2609 { |
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2610 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
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2611 } |
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2612 else |
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2613 { |
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2614 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
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2615 } |
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2616 } |
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2617 |
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2618 CopyListToVector(resourcesId, resourcesList); |
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2619 |
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2620 if (instancesId != NULL) |
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2621 { |
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2622 CopyListToVector(*instancesId, instancesList); |
3027 | 2623 } |
3025
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2624 } |
0 | 2625 } |