Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerIndex.cpp @ 4140:0ddc5297a8ab

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centralization of default parameters for JSON/DicomMap conversions from DCMTK
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 07 Aug 2020 10:46:50 +0200
parents a4f28efdfccf
children d962a2996637
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "ServerIndex.h"
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36
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37 #ifndef NOMINMAX
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38 #define NOMINMAX
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39 #endif
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40
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41 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h"
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42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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43 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h"
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44 #include "../../OrthancFramework/Sources/Logging.h"
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45 #include "../../OrthancFramework/Sources/Toolbox.h"
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46
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47 #include "Database/ResourcesContent.h"
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48 #include "DicomInstanceToStore.h"
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49 #include "OrthancConfiguration.h"
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50 #include "Search/DatabaseLookup.h"
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51 #include "Search/DicomTagConstraint.h"
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52 #include "ServerContext.h"
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53 #include "ServerIndexChange.h"
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54 #include "ServerToolbox.h"
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56 #include <boost/lexical_cast.hpp>
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57 #include <stdio.h>
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58
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59 static const uint64_t MEGA_BYTES = 1024 * 1024;
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60
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61 namespace Orthanc
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62 {
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63 static void CopyListToVector(std::vector<std::string>& target,
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64 const std::list<std::string>& source)
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65 {
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66 target.resize(source.size());
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67
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68 size_t pos = 0;
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69
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70 for (std::list<std::string>::const_iterator
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71 it = source.begin(); it != source.end(); ++it)
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72 {
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73 target[pos] = *it;
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74 pos ++;
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75 }
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76 }
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79 class ServerIndex::Listener : public IDatabaseListener
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80 {
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81 private:
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82 struct FileToRemove
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83 {
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84 private:
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85 std::string uuid_;
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86 FileContentType type_;
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87
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88 public:
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89 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()),
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90 type_(info.GetContentType())
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91 {
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92 }
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93
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94 const std::string& GetUuid() const
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95 {
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96 return uuid_;
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97 }
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98
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99 FileContentType GetContentType() const
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100 {
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101 return type_;
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102 }
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103 };
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104
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105 ServerContext& context_;
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106 bool hasRemainingLevel_;
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107 ResourceType remainingType_;
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108 std::string remainingPublicId_;
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109 std::list<FileToRemove> pendingFilesToRemove_;
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110 std::list<ServerIndexChange> pendingChanges_;
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111 uint64_t sizeOfFilesToRemove_;
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112 bool insideTransaction_;
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113
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114 void Reset()
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115 {
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116 sizeOfFilesToRemove_ = 0;
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117 hasRemainingLevel_ = false;
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118 pendingFilesToRemove_.clear();
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119 pendingChanges_.clear();
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120 }
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121
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122 public:
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123 Listener(ServerContext& context) : context_(context),
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124 insideTransaction_(false)
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125 {
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126 Reset();
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127 assert(ResourceType_Patient < ResourceType_Study &&
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128 ResourceType_Study < ResourceType_Series &&
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129 ResourceType_Series < ResourceType_Instance);
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130 }
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131
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132 void StartTransaction()
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133 {
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134 Reset();
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135 insideTransaction_ = true;
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136 }
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137
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138 void EndTransaction()
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139 {
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140 insideTransaction_ = false;
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141 }
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142
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143 uint64_t GetSizeOfFilesToRemove()
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144 {
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145 return sizeOfFilesToRemove_;
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146 }
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147
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148 void CommitFilesToRemove()
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149 {
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150 for (std::list<FileToRemove>::const_iterator
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151 it = pendingFilesToRemove_.begin();
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152 it != pendingFilesToRemove_.end(); ++it)
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153 {
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154 try
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155 {
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156 context_.RemoveFile(it->GetUuid(), it->GetContentType());
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157 }
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158 catch (OrthancException& e)
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159 {
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160 LOG(ERROR) << "Unable to remove an attachment from the storage area: "
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161 << it->GetUuid() << " (type: " << EnumerationToString(it->GetContentType()) << ")";
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162 }
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163 }
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164 }
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165
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166 void CommitChanges()
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167 {
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168 for (std::list<ServerIndexChange>::const_iterator
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169 it = pendingChanges_.begin();
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170 it != pendingChanges_.end(); ++it)
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171 {
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172 context_.SignalChange(*it);
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173 }
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174 }
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175
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176 virtual void SignalRemainingAncestor(ResourceType parentType,
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177 const std::string& publicId)
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178 {
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179 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")";
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180
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181 if (hasRemainingLevel_)
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182 {
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183 if (parentType < remainingType_)
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184 {
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185 remainingType_ = parentType;
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186 remainingPublicId_ = publicId;
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187 }
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188 }
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189 else
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190 {
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191 hasRemainingLevel_ = true;
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192 remainingType_ = parentType;
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193 remainingPublicId_ = publicId;
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194 }
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195 }
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196
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197 virtual void SignalFileDeleted(const FileInfo& info)
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198 {
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199 assert(Toolbox::IsUuid(info.GetUuid()));
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200 pendingFilesToRemove_.push_back(FileToRemove(info));
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201 sizeOfFilesToRemove_ += info.GetCompressedSize();
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202 }
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203
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204 virtual void SignalChange(const ServerIndexChange& change)
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205 {
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206 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type "
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207 << EnumerationToString(change.GetResourceType()) << ": "
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208 << EnumerationToString(change.GetChangeType());
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209
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210 if (insideTransaction_)
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211 {
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212 pendingChanges_.push_back(change);
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213 }
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214 else
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215 {
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216 context_.SignalChange(change);
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217 }
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218 }
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219
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220 bool HasRemainingLevel() const
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221 {
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222 return hasRemainingLevel_;
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223 }
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224
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225 ResourceType GetRemainingType() const
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226 {
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227 assert(HasRemainingLevel());
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228 return remainingType_;
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229 }
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230
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231 const std::string& GetRemainingPublicId() const
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232 {
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233 assert(HasRemainingLevel());
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234 return remainingPublicId_;
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235 }
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236 };
0
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237
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238
278
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239 class ServerIndex::Transaction
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240 {
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241 private:
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242 ServerIndex& index_;
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243 std::unique_ptr<IDatabaseWrapper::ITransaction> transaction_;
278
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244 bool isCommitted_;
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245
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246 public:
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247 Transaction(ServerIndex& index) :
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248 index_(index),
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249 isCommitted_(false)
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250 {
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251 transaction_.reset(index_.db_.StartTransaction());
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252 transaction_->Begin();
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253
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254 index_.listener_->StartTransaction();
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255 }
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256
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257 ~Transaction()
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258 {
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259 index_.listener_->EndTransaction();
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260
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261 if (!isCommitted_)
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262 {
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263 transaction_->Rollback();
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264 }
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265 }
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266
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267 void Commit(uint64_t sizeOfAddedFiles)
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268 {
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269 if (!isCommitted_)
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270 {
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271 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) -
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272 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove()));
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273
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274 transaction_->Commit(delta);
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275
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276 // We can remove the files once the SQLite transaction has
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277 // been successfully committed. Some files might have to be
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278 // deleted because of recycling.
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279 index_.listener_->CommitFilesToRemove();
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280
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281 // Send all the pending changes to the Orthanc plugins
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282 index_.listener_->CommitChanges();
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283
278
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284 isCommitted_ = true;
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285 }
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286 }
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287 };
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288
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289
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290 class ServerIndex::UnstableResourcePayload
511
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291 {
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292 private:
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293 ResourceType type_;
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294 std::string publicId_;
511
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295 boost::posix_time::ptime time_;
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296
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297 public:
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298 UnstableResourcePayload() : type_(ResourceType_Instance)
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299 {
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300 }
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301
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302 UnstableResourcePayload(Orthanc::ResourceType type,
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303 const std::string& publicId) :
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304 type_(type),
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305 publicId_(publicId)
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306 {
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307 time_ = boost::posix_time::second_clock::local_time();
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308 }
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309
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310 unsigned int GetAge() const
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311 {
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312 return (boost::posix_time::second_clock::local_time() - time_).total_seconds();
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313 }
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314
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315 ResourceType GetResourceType() const
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316 {
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317 return type_;
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318 }
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319
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320 const std::string& GetPublicId() const
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321 {
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322 return publicId_;
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323 }
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324 };
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325
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326
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327 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable
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328 {
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329 private:
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330 class TagInfo
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331 {
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332 private:
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333 ResourceType level_;
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334 DicomTagType type_;
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335
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336 public:
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337 TagInfo()
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338 {
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339 }
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340
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341 TagInfo(ResourceType level,
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342 DicomTagType type) :
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343 level_(level),
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344 type_(type)
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345 {
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346 }
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347
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348 ResourceType GetLevel() const
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349 {
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350 return level_;
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351 }
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352
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353 DicomTagType GetType() const
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354 {
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355 return type_;
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356 }
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357 };
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358
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359 typedef std::map<DicomTag, TagInfo> Registry;
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360
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361
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362 Registry registry_;
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363
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364 void LoadTags(ResourceType level)
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365 {
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366 {
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367 const DicomTag* tags = NULL;
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368 size_t size;
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369
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370 ServerToolbox::LoadIdentifiers(tags, size, level);
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371
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372 for (size_t i = 0; i < size; i++)
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373 {
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374 if (registry_.find(tags[i]) == registry_.end())
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375 {
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376 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier);
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377 }
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378 else
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379 {
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380 // These patient-level tags are copied in the study level
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381 assert(level == ResourceType_Study &&
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382 (tags[i] == DICOM_TAG_PATIENT_ID ||
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383 tags[i] == DICOM_TAG_PATIENT_NAME ||
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384 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE));
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385 }
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386 }
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387 }
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388
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389 {
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390 std::set<DicomTag> tags;
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391 DicomMap::GetMainDicomTags(tags, level);
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392
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393 for (std::set<DicomTag>::const_iterator
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394 tag = tags.begin(); tag != tags.end(); ++tag)
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395 {
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396 if (registry_.find(*tag) == registry_.end())
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397 {
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398 registry_[*tag] = TagInfo(level, DicomTagType_Main);
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399 }
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400 }
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401 }
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402 }
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403
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404 public:
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405 MainDicomTagsRegistry()
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406 {
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407 LoadTags(ResourceType_Patient);
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408 LoadTags(ResourceType_Study);
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409 LoadTags(ResourceType_Series);
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410 LoadTags(ResourceType_Instance);
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411 }
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412
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413 void LookupTag(ResourceType& level,
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414 DicomTagType& type,
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415 const DicomTag& tag) const
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416 {
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417 Registry::const_iterator it = registry_.find(tag);
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418
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419 if (it == registry_.end())
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420 {
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421 // Default values
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422 level = ResourceType_Instance;
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423 type = DicomTagType_Generic;
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424 }
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425 else
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diff changeset
426 {
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diff changeset
427 level = it->second.GetLevel();
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428 type = it->second.GetType();
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diff changeset
429 }
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diff changeset
430 }
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diff changeset
431 };
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432
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433
212
f276b175dcaf delete resources
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diff changeset
434 bool ServerIndex::DeleteResource(Json::Value& target,
0
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435 const std::string& uuid,
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
436 ResourceType expectedType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
438 boost::mutex::scoped_lock lock(mutex_);
201
bee20e978835 refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 200
diff changeset
439
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
440 Transaction t(*this);
201
bee20e978835 refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 200
diff changeset
441
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
442 int64_t id;
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
443 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
444 if (!db_.LookupResource(id, type, uuid) ||
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
445 expectedType != type)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 return false;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
449
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
450 db_.DeleteResource(id);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
452 if (listener_->HasRemainingLevel())
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 {
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
454 ResourceType type = listener_->GetRemainingType();
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
455 const std::string& uuid = listener_->GetRemainingPublicId();
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 target["RemainingAncestor"] = Json::Value(Json::objectValue);
204
7f4acf490179 changes api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 202
diff changeset
458 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid);
434
ccf3a0a43dac EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 433
diff changeset
459 target["RemainingAncestor"]["Type"] = EnumerationToString(type);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 target["RemainingAncestor"]["ID"] = uuid;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 target["RemainingAncestor"] = Json::nullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
467 t.Commit(0);
264
5b8e8b74bc8b remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 240
diff changeset
468
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 return true;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
473 void ServerIndex::FlushThread(ServerIndex* that,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
474 unsigned int threadSleep)
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
475 {
1102
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
476 // By default, wait for 10 seconds before flushing
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
477 unsigned int sleep = 10;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
478
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
479 try
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
480 {
744
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 739
diff changeset
481 boost::mutex::scoped_lock lock(that->mutex_);
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
482 std::string sleepString;
1102
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
483
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
484 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) &&
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
485 Toolbox::IsInteger(sleepString))
1102
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
486 {
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
487 sleep = boost::lexical_cast<unsigned int>(sleepString);
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
488 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
489 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
490 catch (boost::bad_lexical_cast&)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
491 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
492 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
493
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
494 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")";
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
495
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
496 unsigned int count = 0;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
497
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
498 while (!that->done_)
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
499 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
500 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep));
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
501 count++;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
502 if (count < sleep)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
503 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
504 continue;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
505 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
506
2217
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
507 Logging::Flush();
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
508
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
509 boost::mutex::scoped_lock lock(that->mutex_);
3698
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
510
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
511 try
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
512 {
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
513 that->db_.FlushToDisk();
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
514 }
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
515 catch (OrthancException&)
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
516 {
3699
efa815dd2c20 additional logging
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3698
diff changeset
517 LOG(ERROR) << "Cannot flush the SQLite database to the disk (is your filesystem full?)";
3698
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
518 }
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
519
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
520 count = 0;
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
521 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
522
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
523 LOG(INFO) << "Stopping the database flushing thread";
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
524 }
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
525
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
526
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
527 static bool ComputeExpectedNumberOfInstances(int64_t& target,
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
528 const DicomMap& dicomSummary)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
529 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
530 try
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
531 {
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
532 const DicomValue* value;
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
533 const DicomValue* value2;
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
534
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
535 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL &&
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
536 !value->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
537 !value->IsBinary() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
538 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
539 !value2->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
540 !value2->IsBinary())
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
541 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
542 // Patch for series with temporal positions thanks to Will Ryder
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
543 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent());
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
544 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent());
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
545 target = imagesInAcquisition * countTemporalPositions;
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
546 return (target > 0);
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
547 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
548
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
549 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL &&
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
550 !value->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
551 !value->IsBinary() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
552 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
553 !value2->IsBinary() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
554 !value2->IsNull())
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
555 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
556 // Support of Cardio-PET images
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
557 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent());
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
558 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent());
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
559 target = numberOfSlices * numberOfTimeSlices;
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
560 return (target > 0);
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
561 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
562
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
563 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
564 !value->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
565 !value->IsBinary())
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
566 {
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
567 target = boost::lexical_cast<int64_t>(value->GetContent());
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
568 return (target > 0);
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
569 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
570 }
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
571 catch (OrthancException&)
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
572 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
573 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
574 catch (boost::bad_lexical_cast&)
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
575 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
576 }
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
577
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
578 return false;
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
579 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
580
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
581
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
582
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
583
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
584 static bool LookupStringMetadata(std::string& result,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
585 const std::map<MetadataType, std::string>& metadata,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
586 MetadataType type)
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
587 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
588 std::map<MetadataType, std::string>::const_iterator found = metadata.find(type);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
589
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
590 if (found == metadata.end())
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
591 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
592 return false;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
593 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
594 else
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
595 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
596 result = found->second;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
597 return true;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
598 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
599 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
600
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
601
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
602 static bool LookupIntegerMetadata(int64_t& result,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
603 const std::map<MetadataType, std::string>& metadata,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
604 MetadataType type)
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
605 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
606 std::string s;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
607 if (!LookupStringMetadata(s, metadata, type))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
608 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
609 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
610 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
611
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
612 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
613 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
614 result = boost::lexical_cast<int64_t>(s);
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
615 return true;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
616 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
617 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
618 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
619 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
620 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
621 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
622
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
623
1297
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
624 void ServerIndex::LogChange(int64_t internalId,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
625 ChangeType changeType,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
626 ResourceType resourceType,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
627 const std::string& publicId)
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
628 {
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
629 ServerIndexChange change(changeType, resourceType, publicId);
1300
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
630
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
631 if (changeType <= ChangeType_INTERNAL_LastLogged)
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
632 {
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
633 db_.LogChange(internalId, change);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
634 }
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
635
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
636 assert(listener_.get() != NULL);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
637 listener_->SignalChange(change);
1297
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
638 }
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
639
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
640
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
641 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
642 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
643 std::string oldValue;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
644
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
645 if (db_.LookupGlobalProperty(oldValue, property))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
646 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
647 uint64_t oldNumber;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
648
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
649 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
650 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
651 oldNumber = boost::lexical_cast<uint64_t>(oldValue);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
652 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1));
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
653 return oldNumber + 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
654 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
655 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
656 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
657 throw OrthancException(ErrorCode_InternalError);
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
658 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
659 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
660 else
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
661 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
662 // Initialize the sequence at "1"
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
663 db_.SetGlobalProperty(property, "1");
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
664 return 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
665 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
666 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
667
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
668
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
669
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
670 ServerIndex::ServerIndex(ServerContext& context,
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
671 IDatabaseWrapper& db,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
672 unsigned int threadSleep) :
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
673 done_(false),
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
674 db_(db),
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
675 maximumStorageSize_(0),
2826
c277e0421200 unit testing of overwriting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
676 maximumPatients_(0),
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
677 mainDicomTagsRegistry_(new MainDicomTagsRegistry)
186
f68c039b0571 preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 180
diff changeset
678 {
1432
0ac74fa21db8 rename IServerIndexListener as IDatabaseListener
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
679 listener_.reset(new Listener(context));
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
680 db_.SetListener(*listener_);
180
626777d01dc4 use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
681
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
682 // Initial recycling if the parameters have changed since the last
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
683 // execution of Orthanc
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
684 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
685
1306
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
686 if (db.HasFlushToDisk())
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
687 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
688 flushThread_ = boost::thread(FlushThread, this, threadSleep);
1306
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
689 }
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
690
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
691 unstableResourcesMonitorThread_ = boost::thread
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
692 (UnstableResourcesMonitorThread, this, threadSleep);
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
693 }
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
694
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
695
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
696
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
697 ServerIndex::~ServerIndex()
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
698 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
699 if (!done_)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
700 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
701 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!";
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
702 Stop();
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
703 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
704 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
706
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
707
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
708 void ServerIndex::Stop()
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
709 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
710 if (!done_)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
711 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
712 done_ = true;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
713
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
714 if (db_.HasFlushToDisk() &&
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
715 flushThread_.joinable())
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
716 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
717 flushThread_.join();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
718 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
719
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
720 if (unstableResourcesMonitorThread_.joinable())
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
721 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
722 unstableResourcesMonitorThread_.join();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
723 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
724 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
725 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
726
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
727
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
728 static void SetInstanceMetadata(ResourcesContent& content,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
729 std::map<MetadataType, std::string>& instanceMetadata,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
730 int64_t instance,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
731 MetadataType metadata,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
732 const std::string& value)
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
733 {
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
734 content.AddMetadata(instance, metadata, value);
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
735 instanceMetadata[metadata] = value;
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
736 }
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
737
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
738
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
739 void ServerIndex::SignalNewResource(ChangeType changeType,
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
740 ResourceType level,
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
741 const std::string& publicId,
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
742 int64_t internalId)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
743 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
744 ServerIndexChange change(changeType, level, publicId);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
745 db_.LogChange(internalId, change);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
746
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
747 assert(listener_.get() != NULL);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
748 listener_->SignalChange(change);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
749 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
750
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
751
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
752 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata,
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
753 DicomInstanceToStore& instanceToStore,
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
754 const Attachments& attachments,
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
755 bool overwrite)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
756 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
757 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
758
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
759 const DicomMap& dicomSummary = instanceToStore.GetSummary();
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
760 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata();
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
761
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
762 int64_t expectedInstances;
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
763 const bool hasExpectedInstances =
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
764 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary);
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
765
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
766 instanceMetadata.clear();
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
767
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
768 const std::string hashPatient = instanceToStore.GetHasher().HashPatient();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
769 const std::string hashStudy = instanceToStore.GetHasher().HashStudy();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
770 const std::string hashSeries = instanceToStore.GetHasher().HashSeries();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
771 const std::string hashInstance = instanceToStore.GetHasher().HashInstance();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
772
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
773 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
774 {
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
775 Transaction t(*this);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
776
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
777 IDatabaseWrapper::CreateInstanceResult status;
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
778 int64_t instanceId;
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
779
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
780 // Check whether this instance is already stored
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
781 if (!db_.CreateInstance(status, instanceId, hashPatient,
3082
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
782 hashStudy, hashSeries, hashInstance))
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
783 {
3082
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
784 // The instance already exists
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
785
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
786 if (overwrite)
3082
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
787 {
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
788 // Overwrite the old instance
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
789 LOG(INFO) << "Overwriting instance: " << hashInstance;
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
790 db_.DeleteResource(instanceId);
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
791
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
792 // Re-create the instance, now that the old one is removed
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
793 if (!db_.CreateInstance(status, instanceId, hashPatient,
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
794 hashStudy, hashSeries, hashInstance))
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
795 {
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
796 throw OrthancException(ErrorCode_InternalError);
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
797 }
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
798 }
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
799 else
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
800 {
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
801 // Do nothing if the instance already exists and overwriting is disabled
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
802 db_.GetAllMetadata(instanceMetadata, instanceId);
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
803 return StoreStatus_AlreadyStored;
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
804 }
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
805 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
806
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
807
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
808 // Warn about the creation of new resources. The order must be
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
809 // from instance to patient.
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
810
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
811 // NB: In theory, could be sped up by grouping the underlying
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
812 // calls to "db_.LogChange()". However, this would only have an
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
813 // impact when new patient/study/series get created, which
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
814 // occurs far less often that creating new instances. The
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
815 // positive impact looks marginal in practice.
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
816 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
817
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
818 if (status.isNewSeries_)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
819 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
820 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
821 }
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
822
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
823 if (status.isNewStudy_)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
824 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
825 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
826 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
827
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
828 if (status.isNewPatient_)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
829 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
830 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
831 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
832
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
833
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
834 // Ensure there is enough room in the storage for the new instance
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
835 uint64_t instanceSize = 0;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
836 for (Attachments::const_iterator it = attachments.begin();
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
837 it != attachments.end(); ++it)
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
838 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
839 instanceSize += it->GetCompressedSize();
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
840 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
841
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
842 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */);
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
843
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
844
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
845 // Attach the files to the newly created instance
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
846 for (Attachments::const_iterator it = attachments.begin();
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
847 it != attachments.end(); ++it)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
848 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
849 db_.AddAttachment(instanceId, *it);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
850 }
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
851
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
852
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853 {
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
854 ResourcesContent content;
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
855
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
856 // Populate the tags of the newly-created resources
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
857
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
858 content.AddResource(instanceId, ResourceType_Instance, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
859
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
860 if (status.isNewSeries_)
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
861 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
862 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
863 }
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
864
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
865 if (status.isNewStudy_)
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
866 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
867 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
868 }
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
869
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
870 if (status.isNewPatient_)
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
871 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
872 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
873 }
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
874
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
875
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
876 // Attach the user-specified metadata
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
877
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
878 for (MetadataMap::const_iterator
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
879 it = metadata.begin(); it != metadata.end(); ++it)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
880 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
881 switch (it->first.first)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
882 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
883 case ResourceType_Patient:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
884 content.AddMetadata(status.patientId_, it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
885 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
886
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
887 case ResourceType_Study:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
888 content.AddMetadata(status.studyId_, it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
889 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
890
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
891 case ResourceType_Series:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
892 content.AddMetadata(status.seriesId_, it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
893 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
894
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
895 case ResourceType_Instance:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
896 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
897 it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
898 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
899
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
900 default:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
901 throw OrthancException(ErrorCode_ParameterOutOfRange);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
902 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
903 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
904
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
905
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
906 // Attach the auto-computed metadata for the patient/study/series levels
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
907 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
908 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
909 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
910 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
911
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
912 if (status.isNewSeries_ &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
913 hasExpectedInstances)
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
914 {
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
915 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances,
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
916 boost::lexical_cast<std::string>(expectedInstances));
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
917 }
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
918
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
919
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
920 // Attach the auto-computed metadata for the instance level,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
921 // reflecting these additions into the input metadata map
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
922 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
923 MetadataType_Instance_ReceptionDate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
924 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
925 instanceToStore.GetOrigin().GetRemoteAetC());
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
926 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
927 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin()));
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
928
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
929
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
930 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
931 std::string s;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
932
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
933 if (instanceToStore.LookupTransferSyntax(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
934 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
935 // New in Orthanc 1.2.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
936 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
937 MetadataType_Instance_TransferSyntax, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
938 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
939
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
940 if (instanceToStore.GetOrigin().LookupRemoteIp(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
941 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
942 // New in Orthanc 1.4.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
943 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
944 MetadataType_Instance_RemoteIp, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
945 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
946
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
947 if (instanceToStore.GetOrigin().LookupCalledAet(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
948 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
949 // New in Orthanc 1.4.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
950 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
951 MetadataType_Instance_CalledAet, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
952 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
953
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
954 if (instanceToStore.GetOrigin().LookupHttpUsername(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
955 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
956 // New in Orthanc 1.4.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
957 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
958 MetadataType_Instance_HttpUsername, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
959 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
960 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
961
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
962
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
963 const DicomValue* value;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
964 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL &&
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
965 !value->IsNull() &&
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
966 !value->IsBinary())
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
967 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
968 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
969 MetadataType_Instance_SopClassUid, value->GetContent());
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
970 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
971
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
972
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
973 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL ||
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
974 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
975 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
976 if (!value->IsNull() &&
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
977 !value->IsBinary())
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
978 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
979 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
980 MetadataType_Instance_IndexInSeries, value->GetContent());
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
981 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
982 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
983
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
984
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
985 db_.SetResourcesContent(content);
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
986 }
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
987
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
988
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
989 // Check whether the series of this new instance is now completed
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
990 int64_t expectedNumberOfInstances;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
991 if (ComputeExpectedNumberOfInstances(expectedNumberOfInstances, dicomSummary))
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
992 {
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
993 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_, expectedNumberOfInstances);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
994 if (seriesStatus == SeriesStatus_Complete)
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
995 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
996 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
997 }
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
998 }
3087
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3086
diff changeset
999
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
1000
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1001 // Mark the parent resources of this instance as unstable
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1002 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1003 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1004 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1005
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1006 t.Commit(instanceSize);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1007
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1008 return StoreStatus_Success;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1009 }
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1010 catch (OrthancException& e)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1011 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1012 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1013 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1014
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1015 return StoreStatus_Failure;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1016 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1017
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1018
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1019 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1020 /* out */ uint64_t& uncompressedSize,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1021 /* out */ uint64_t& countPatients,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1022 /* out */ uint64_t& countStudies,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1023 /* out */ uint64_t& countSeries,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1024 /* out */ uint64_t& countInstances)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1025 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1026 boost::mutex::scoped_lock lock(mutex_);
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1027 diskSize = db_.GetTotalCompressedSize();
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1028 uncompressedSize = db_.GetTotalUncompressedSize();
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1029 countPatients = db_.GetResourceCount(ResourceType_Patient);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1030 countStudies = db_.GetResourceCount(ResourceType_Study);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1031 countSeries = db_.GetResourceCount(ResourceType_Series);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1032 countInstances = db_.GetResourceCount(ResourceType_Instance);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1033 }
187
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 186
diff changeset
1034
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1035
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1036 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id,
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1037 int64_t expectedNumberOfInstances)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1038 {
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1039 std::list<std::string> values;
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1040 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1041
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1042 std::set<int64_t> instances;
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1043
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1044 for (std::list<std::string>::const_iterator
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1045 it = values.begin(); it != values.end(); ++it)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1046 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1047 int64_t index;
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1048
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1049 try
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1050 {
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1051 index = boost::lexical_cast<int64_t>(*it);
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1052 }
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1053 catch (boost::bad_lexical_cast&)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1054 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1055 return SeriesStatus_Unknown;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1056 }
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1057
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1058 if (!(index > 0 && index <= expectedNumberOfInstances))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1059 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1060 // Out-of-range instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1061 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1062 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1063
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1064 if (instances.find(index) != instances.end())
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1065 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1066 // Twice the same instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1067 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1068 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1069
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1070 instances.insert(index);
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1071 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1072
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1073 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1074 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1075 return SeriesStatus_Complete;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1076 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1077 else
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1078 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1079 return SeriesStatus_Missing;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1080 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1081 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1082
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1083
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
1084 void ServerIndex::MainDicomTagsToJson(Json::Value& target,
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1085 int64_t resourceId,
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1086 ResourceType resourceType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1087 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1088 DicomMap tags;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1089 db_.GetMainDicomTags(tags, resourceId);
1676
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1090
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1091 if (resourceType == ResourceType_Study)
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1092 {
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1093 DicomMap t1, t2;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1094 tags.ExtractStudyInformation(t1);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1095 tags.ExtractPatientInformation(t2);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1096
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1097 target["MainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1098 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1099
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1100 target["PatientMainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1101 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1102 }
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1103 else
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1104 {
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1105 target["MainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1106 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1107 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1108 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1109
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1110
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1111 bool ServerIndex::LookupResource(Json::Value& result,
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1112 const std::string& publicId,
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1113 ResourceType expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1114 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1115 result = Json::objectValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1116
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1117 boost::mutex::scoped_lock lock(mutex_);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1118
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1119 // Lookup for the requested resource
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1120 int64_t id;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1121 ResourceType type;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1122 std::string parent;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1123 if (!db_.LookupResourceAndParent(id, type, parent, publicId) ||
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1124 type != expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1125 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1126 return false;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1127 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1128
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1129 // Set information about the parent resource (if it exists)
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1130 if (type == ResourceType_Patient)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1131 {
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1132 if (!parent.empty())
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1133 {
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1134 throw OrthancException(ErrorCode_DatabasePlugin);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1135 }
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1136 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1137 else
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1138 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1139 if (parent.empty())
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1140 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1141 throw OrthancException(ErrorCode_DatabasePlugin);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1142 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1143
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1144 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1145 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1146 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1147 result["ParentPatient"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1148 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1149
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1150 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1151 result["ParentStudy"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1152 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1153
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1154 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1155 result["ParentSeries"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1156 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1157
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1158 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1159 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1160 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1161 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1162
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1163 // List the children resources
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1164 std::list<std::string> children;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1165 db_.GetChildrenPublicId(children, id);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1166
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1167 if (type != ResourceType_Instance)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1168 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1169 Json::Value c = Json::arrayValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1170
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1171 for (std::list<std::string>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1172 it = children.begin(); it != children.end(); ++it)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1173 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1174 c.append(*it);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1175 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1176
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1177 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1178 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1179 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1180 result["Studies"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1181 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1182
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1183 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1184 result["Series"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1185 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1186
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1187 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1188 result["Instances"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1189 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1190
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1191 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1192 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1193 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1194 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1195
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1196 // Extract the metadata
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1197 std::map<MetadataType, std::string> metadata;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1198 db_.GetAllMetadata(metadata, id);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1199
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1200 // Set the resource type
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1201 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1202 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1203 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1204 result["Type"] = "Patient";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1205 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1206
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1207 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1208 result["Type"] = "Study";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1209 break;
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1210
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1211 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1212 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1213 result["Type"] = "Series";
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1214
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1215 int64_t i;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1216 if (LookupIntegerMetadata(i, metadata, MetadataType_Series_ExpectedNumberOfInstances))
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1217 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1218 result["ExpectedNumberOfInstances"] = static_cast<int>(i);
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1219 result["Status"] = EnumerationToString(GetSeriesStatus(id, i));
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1220 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1221 else
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1222 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1223 result["ExpectedNumberOfInstances"] = Json::nullValue;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1224 result["Status"] = EnumerationToString(SeriesStatus_Unknown);
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1225 }
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1226
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1227 break;
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1228 }
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1229
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1230 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1231 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1232 result["Type"] = "Instance";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1233
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1234 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1235 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom))
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1236 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1237 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1238 }
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1239
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1240 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize());
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1241 result["FileUuid"] = attachment.GetUuid();
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1242
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1243 int64_t i;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1244 if (LookupIntegerMetadata(i, metadata, MetadataType_Instance_IndexInSeries))
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1245 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1246 result["IndexInSeries"] = static_cast<int>(i);
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1247 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1248 else
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1249 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1250 result["IndexInSeries"] = Json::nullValue;
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1251 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1252
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1253 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1254 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1255
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1256 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1257 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1258 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1259
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1260 // Record the remaining information
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1261 result["ID"] = publicId;
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1262 MainDicomTagsToJson(result, id, type);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1263
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1264 std::string tmp;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1265
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1266 if (LookupStringMetadata(tmp, metadata, MetadataType_AnonymizedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1267 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1268 result["AnonymizedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1269 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1270
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1271 if (LookupStringMetadata(tmp, metadata, MetadataType_ModifiedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1272 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1273 result["ModifiedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1274 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1275
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1276 if (type == ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1277 type == ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1278 type == ResourceType_Series)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1279 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1280 result["IsStable"] = !unstableResources_.Contains(id);
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
1281
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1282 if (LookupStringMetadata(tmp, metadata, MetadataType_LastUpdate))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1283 {
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
1284 result["LastUpdate"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1285 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1286 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1287
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1288 return true;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1289 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1290
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1291
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1292 bool ServerIndex::LookupAttachment(FileInfo& attachment,
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1293 const std::string& instanceUuid,
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
1294 FileContentType contentType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1295 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1296 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1297
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1298 int64_t id;
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1299 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1300 if (!db_.LookupResource(id, type, instanceUuid))
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1301 {
1113
ba5c0908600c Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1102
diff changeset
1302 throw OrthancException(ErrorCode_UnknownResource);
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1303 }
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1304
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1305 if (db_.LookupAttachment(attachment, id, contentType))
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1306 {
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
1307 assert(attachment.GetContentType() == contentType);
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1308 return true;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1309 }
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1310 else
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1311 {
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1312 return false;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1313 }
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1314 }
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1315
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1316
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1317
1354
3dd494f201a1 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1352
diff changeset
1318 void ServerIndex::GetAllUuids(std::list<std::string>& target,
190
b6cef9d45cc3 getallpublicids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 189
diff changeset
1319 ResourceType resourceType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1320 {
1357
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
1321 boost::mutex::scoped_lock lock(mutex_);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
1322 db_.GetAllPublicIds(target, resourceType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1323 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1324
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1325
1509
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1326 void ServerIndex::GetAllUuids(std::list<std::string>& target,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1327 ResourceType resourceType,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1328 size_t since,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1329 size_t limit)
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1330 {
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1331 if (limit == 0)
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1332 {
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1333 target.clear();
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1334 return;
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1335 }
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1336
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1337 boost::mutex::scoped_lock lock(mutex_);
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1338 db_.GetAllPublicIds(target, resourceType, since, limit);
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1339 }
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1340
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1341
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1342 template <typename T>
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1343 static void FormatLog(Json::Value& target,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1344 const std::list<T>& log,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1345 const std::string& name,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1346 bool done,
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1347 int64_t since,
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1348 bool hasLast,
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1349 int64_t last)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1350 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1351 Json::Value items = Json::arrayValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1352 for (typename std::list<T>::const_iterator
1304
7b6925b0890d cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1300
diff changeset
1353 it = log.begin(); it != log.end(); ++it)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1354 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1355 Json::Value item;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1356 it->Format(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1357 items.append(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1358 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1359
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1360 target = Json::objectValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1361 target[name] = items;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1362 target["Done"] = done;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1363
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1364 if (!hasLast)
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1365 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1366 // Best-effort guess of the last index in the sequence
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1367 if (log.empty())
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1368 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1369 last = since;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1370 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1371 else
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1372 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1373 last = log.back().GetSeq();
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1374 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1375 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1376
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1377 target["Last"] = static_cast<int>(last);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1378 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1379
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1380
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1381 void ServerIndex::GetChanges(Json::Value& target,
204
7f4acf490179 changes api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 202
diff changeset
1382 int64_t since,
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1383 unsigned int maxResults)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1384 {
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1385 std::list<ServerIndexChange> changes;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1386 bool done;
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1387 bool hasLast = false;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1388 int64_t last = 0;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1389
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1390 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1391 boost::mutex::scoped_lock lock(mutex_);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1392
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1393 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1394 // "GetLastChange()" involves calls to "GetPublicId()"
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1395 Transaction transaction(*this);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1396
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1397 db_.GetChanges(changes, done, since, maxResults);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1398 if (changes.empty())
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1399 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1400 last = db_.GetLastChangeIndex();
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1401 hasLast = true;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1402 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1403
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1404 transaction.Commit(0);
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1405 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1406
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1407 FormatLog(target, changes, "Changes", done, since, hasLast, last);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1408 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1409
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1410
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1411 void ServerIndex::GetLastChange(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1412 {
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1413 std::list<ServerIndexChange> changes;
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1414 bool hasLast = false;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1415 int64_t last = 0;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1416
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1417 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1418 boost::mutex::scoped_lock lock(mutex_);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1419
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1420 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1421 // "GetLastChange()" involves calls to "GetPublicId()"
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1422 Transaction transaction(*this);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1423
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1424 db_.GetLastChange(changes);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1425 if (changes.empty())
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1426 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1427 last = db_.GetLastChangeIndex();
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1428 hasLast = true;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1429 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1430
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1431 transaction.Commit(0);
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1432 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1433
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1434 FormatLog(target, changes, "Changes", true, 0, hasLast, last);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1435 }
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1436
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1437
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1438 void ServerIndex::LogExportedResource(const std::string& publicId,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1439 const std::string& remoteModality)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1440 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1441 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1442 Transaction transaction(*this);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1443
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1444 int64_t id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1445 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1446 if (!db_.LookupResource(id, type, publicId))
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1447 {
2573
3372c5255333 StoreScuJob, Orthanc Explorer for jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2475
diff changeset
1448 throw OrthancException(ErrorCode_InexistentItem);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1449 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1450
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1451 std::string patientId;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1452 std::string studyInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1453 std::string seriesInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1454 std::string sopInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1455
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1456 int64_t currentId = id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1457 ResourceType currentType = type;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1458
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1459 // Iteratively go up inside the patient/study/series/instance hierarchy
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1460 bool done = false;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1461 while (!done)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1462 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1463 DicomMap map;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1464 db_.GetMainDicomTags(map, currentId);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1465
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1466 switch (currentType)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1467 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1468 case ResourceType_Patient:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1469 if (map.HasTag(DICOM_TAG_PATIENT_ID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1470 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1471 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1472 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1473 done = true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1474 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1475
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1476 case ResourceType_Study:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1477 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1478 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1479 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1480 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1481 currentType = ResourceType_Patient;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1482 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1483
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1484 case ResourceType_Series:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1485 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1486 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1487 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1488 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1489 currentType = ResourceType_Study;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1490 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1491
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1492 case ResourceType_Instance:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1493 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1494 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1495 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1496 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1497 currentType = ResourceType_Series;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1498 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1499
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1500 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1501 throw OrthancException(ErrorCode_InternalError);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1502 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1503
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1504 // If we have not reached the Patient level, find the parent of
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1505 // the current resource
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1506 if (!done)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1507 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1508 bool ok = db_.LookupParent(currentId, currentId);
4121
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1509 (void) ok; // Remove warning about unused variable in release builds
375
d1ea72f1c967 major fix of storescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1510 assert(ok);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1511 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1512 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1513
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1514 ExportedResource resource(-1,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1515 type,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1516 publicId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1517 remoteModality,
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1518 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */),
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1519 patientId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1520 studyInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1521 seriesInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1522 sopInstanceUid);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1523
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1524 db_.LogExportedResource(resource);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1525 transaction.Commit(0);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1526 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1527
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1528
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1529 void ServerIndex::GetExportedResources(Json::Value& target,
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1530 int64_t since,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1531 unsigned int maxResults)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1532 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1533 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1534 bool done;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1535
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1536 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1537 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1538 db_.GetExportedResources(exported, done, since, maxResults);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1539 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1540
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1541 FormatLog(target, exported, "Exports", done, since, false, -1);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1542 }
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1543
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1544
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1545 void ServerIndex::GetLastExportedResource(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1546 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1547 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1548
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1549 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1550 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1551 db_.GetLastExportedResource(exported);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1552 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1553
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1554 FormatLog(target, exported, "Exports", true, 0, false, -1);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1555 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1556
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1557
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1558 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1559 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1560 if (maximumStorageSize_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1561 {
3020
d207f6ac1f86 tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3019
diff changeset
1562 assert(maximumStorageSize_ >= instanceSize);
d207f6ac1f86 tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3019
diff changeset
1563
d207f6ac1f86 tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3019
diff changeset
1564 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize))
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1565 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1566 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1567 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1568 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1569
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1570 if (maximumPatients_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1571 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1572 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1573 if (patientCount > maximumPatients_)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1574 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1575 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1576 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1577 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1578
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1579 return false;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1580 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1581
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1582
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1583 void ServerIndex::Recycle(uint64_t instanceSize,
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1584 const std::string& newPatientId)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1585 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1586 if (!IsRecyclingNeeded(instanceSize))
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1587 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1588 return;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1589 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1590
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1591 // Check whether other DICOM instances from this patient are
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1592 // already stored
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1593 int64_t patientToAvoid;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1594 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1595 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1596
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1597 if (hasPatientToAvoid && type != ResourceType_Patient)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1598 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1599 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1600 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1601
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1602 // Iteratively select patient to remove until there is enough
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1603 // space in the DICOM store
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1604 int64_t patientToRecycle;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1605 while (true)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1606 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1607 // If other instances of this patient are already in the store,
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1608 // we must avoid to recycle them
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1609 bool ok = hasPatientToAvoid ?
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1610 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) :
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1611 db_.SelectPatientToRecycle(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1612
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1613 if (!ok)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1614 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1615 throw OrthancException(ErrorCode_FullStorage);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1616 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1617
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1310
diff changeset
1618 VLOG(1) << "Recycling one patient";
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1619 db_.DeleteResource(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1620
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1621 if (!IsRecyclingNeeded(instanceSize))
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1622 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1623 // OK, we're done
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1624 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1625 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1626 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1627 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1628
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1629 void ServerIndex::SetMaximumPatientCount(unsigned int count)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1630 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1631 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1632 maximumPatients_ = count;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1633
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1634 if (count == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1635 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1636 LOG(WARNING) << "No limit on the number of stored patients";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1637 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1638 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1639 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1640 LOG(WARNING) << "At most " << count << " patients will be stored";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1641 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1642
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1643 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1644 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1645
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1646 void ServerIndex::SetMaximumStorageSize(uint64_t size)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1647 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1648 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1649 maximumStorageSize_ = size;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1650
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1651 if (size == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1652 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1653 LOG(WARNING) << "No limit on the size of the storage area";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1654 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1655 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1656 {
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1657 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area";
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1658 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1659
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1660 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1661 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1662
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1663
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1664 void ServerIndex::StandaloneRecycling()
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1665 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1666 // WARNING: No mutex here, do not include this as a public method
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1667 Transaction t(*this);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1668 Recycle(0, "");
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1669 t.Commit(0);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1670 }
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1671
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1672
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1673 bool ServerIndex::IsProtectedPatient(const std::string& publicId)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1674 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1675 boost::mutex::scoped_lock lock(mutex_);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1676
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1677 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1678 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1679 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1680 if (!db_.LookupResource(id, type, publicId) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1681 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1682 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1683 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1684 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1685
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1686 return db_.IsProtectedPatient(id);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1687 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1688
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1689
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1690 void ServerIndex::SetProtectedPatient(const std::string& publicId,
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1691 bool isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1692 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1693 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1694 Transaction transaction(*this);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1695
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1696 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1697 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1698 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1699 if (!db_.LookupResource(id, type, publicId) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1700 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1701 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1702 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1703 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1704
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1705 db_.SetProtectedPatient(id, isProtected);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1706 transaction.Commit(0);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1707
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1708 if (isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1709 LOG(INFO) << "Patient " << publicId << " has been protected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1710 else
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1711 LOG(INFO) << "Patient " << publicId << " has been unprotected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1712 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1713
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1714
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1715 void ServerIndex::GetChildren(std::list<std::string>& result,
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1716 const std::string& publicId)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1717 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1718 result.clear();
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1719
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1720 boost::mutex::scoped_lock lock(mutex_);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1721
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1722 ResourceType type;
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1723 int64_t resource;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1724 if (!db_.LookupResource(resource, type, publicId))
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1725 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1726 throw OrthancException(ErrorCode_UnknownResource);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1727 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1728
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1729 if (type == ResourceType_Instance)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1730 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1731 // An instance cannot have a child
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1732 throw OrthancException(ErrorCode_BadParameterType);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1733 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1734
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1735 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1736 db_.GetChildrenInternalId(tmp, resource);
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1737
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1738 for (std::list<int64_t>::const_iterator
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1739 it = tmp.begin(); it != tmp.end(); ++it)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1740 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1741 result.push_back(db_.GetPublicId(*it));
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1742 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1743 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1744
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1745
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1746 void ServerIndex::GetChildInstances(std::list<std::string>& result,
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1747 const std::string& publicId)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1748 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1749 result.clear();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1750
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1751 boost::mutex::scoped_lock lock(mutex_);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1752
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1753 ResourceType type;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1754 int64_t top;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1755 if (!db_.LookupResource(top, type, publicId))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1756 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1757 throw OrthancException(ErrorCode_UnknownResource);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1758 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1759
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1760 if (type == ResourceType_Instance)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1761 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1762 // The resource is already an instance: Do not go down the hierarchy
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1763 result.push_back(publicId);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1764 return;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1765 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1766
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1767 std::stack<int64_t> toExplore;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1768 toExplore.push(top);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1769
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1770 std::list<int64_t> tmp;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1771
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1772 while (!toExplore.empty())
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1773 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1774 // Get the internal ID of the current resource
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1775 int64_t resource = toExplore.top();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1776 toExplore.pop();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1777
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1778 if (db_.GetResourceType(resource) == ResourceType_Instance)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1779 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1780 result.push_back(db_.GetPublicId(resource));
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1781 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1782 else
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1783 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1784 // Tag all the children of this resource as to be explored
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1785 db_.GetChildrenInternalId(tmp, resource);
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1786 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1787 it = tmp.begin(); it != tmp.end(); ++it)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1788 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1789 toExplore.push(*it);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1790 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1791 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1792 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1793 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1794
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1795
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1796 void ServerIndex::SetMetadata(const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1797 MetadataType type,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1798 const std::string& value)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1799 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1800 boost::mutex::scoped_lock lock(mutex_);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1801 Transaction t(*this);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1802
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1803 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1804 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1805 if (!db_.LookupResource(id, rtype, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1806 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1807 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1808 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1809
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1810 db_.SetMetadata(id, type, value);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1811
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1812 if (IsUserMetadata(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1813 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1814 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1815 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1816
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1817 t.Commit(0);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1818 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1819
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1820
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1821 void ServerIndex::DeleteMetadata(const std::string& publicId,
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1822 MetadataType type)
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1823 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1824 boost::mutex::scoped_lock lock(mutex_);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1825 Transaction t(*this);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1826
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1827 ResourceType rtype;
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1828 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1829 if (!db_.LookupResource(id, rtype, publicId))
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1830 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1831 throw OrthancException(ErrorCode_UnknownResource);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1832 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1833
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1834 db_.DeleteMetadata(id, type);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1835
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1836 if (IsUserMetadata(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1837 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1838 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1839 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1840
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1841 t.Commit(0);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1842 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1843
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1844
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1845 bool ServerIndex::LookupMetadata(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1846 const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1847 MetadataType type)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1848 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1849 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1850
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1851 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1852 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1853 if (!db_.LookupResource(id, rtype, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1854 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1855 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1856 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1857
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1858 return db_.LookupMetadata(target, id, type);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1859 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1860
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1861
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1862 void ServerIndex::GetAllMetadata(std::map<MetadataType, std::string>& target,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1863 const std::string& publicId)
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1864 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1865 boost::mutex::scoped_lock lock(mutex_);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1866
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1867 ResourceType type;
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1868 int64_t id;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1869 if (!db_.LookupResource(id, type, publicId))
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1870 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1871 throw OrthancException(ErrorCode_UnknownResource);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1872 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1873
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1874 return db_.GetAllMetadata(target, id);
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1875 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1876
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1877
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1878 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1879 const std::string& publicId,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1880 ResourceType expectedType)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1881 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1882 boost::mutex::scoped_lock lock(mutex_);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1883
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1884 ResourceType type;
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1885 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1886 if (!db_.LookupResource(id, type, publicId) ||
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1887 expectedType != type)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1888 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1889 throw OrthancException(ErrorCode_UnknownResource);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1890 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1891
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1892 db_.ListAvailableAttachments(target, id);
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1893 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1894
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1895
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1896 bool ServerIndex::LookupParent(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1897 const std::string& publicId)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1898 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1899 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1900
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1901 ResourceType type;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1902 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1903 if (!db_.LookupResource(id, type, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1904 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1905 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1906 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1907
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1908 int64_t parentId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1909 if (db_.LookupParent(parentId, id))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1910 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1911 target = db_.GetPublicId(parentId);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1912 return true;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1913 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1914 else
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1915 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1916 return false;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1917 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1918 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1919
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1920
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1921 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1922 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1923 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1924 Transaction transaction(*this);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1925
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1926 uint64_t seq = IncrementGlobalSequenceInternal(sequence);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1927 transaction.Commit(0);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1928
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1929 return seq;
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1930 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1931
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1932
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1933
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1934 void ServerIndex::LogChange(ChangeType changeType,
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1935 const std::string& publicId)
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1936 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1937 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1938 Transaction transaction(*this);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1939
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1940 int64_t id;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1941 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1942 if (!db_.LookupResource(id, type, publicId))
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1943 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1944 throw OrthancException(ErrorCode_UnknownResource);
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1945 }
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1946
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1947 LogChange(id, changeType, type, publicId);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1948 transaction.Commit(0);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1949 }
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1950
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1951
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1952 void ServerIndex::DeleteChanges()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1953 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1954 boost::mutex::scoped_lock lock(mutex_);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1955
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1956 Transaction transaction(*this);
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
1957 db_.ClearChanges();
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1958 transaction.Commit(0);
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1959 }
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1960
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1961 void ServerIndex::DeleteExportedResources()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1962 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1963 boost::mutex::scoped_lock lock(mutex_);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1964
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1965 Transaction transaction(*this);
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
1966 db_.ClearExportedResources();
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1967 transaction.Commit(0);
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1968 }
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1969
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1970
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1971 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1972 /* out */ uint64_t& diskSize,
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1973 /* out */ uint64_t& uncompressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1974 /* out */ unsigned int& countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1975 /* out */ unsigned int& countSeries,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1976 /* out */ unsigned int& countInstances,
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
1977 /* out */ uint64_t& dicomDiskSize,
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
1978 /* out */ uint64_t& dicomUncompressedSize,
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1979 const std::string& publicId)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1980 {
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1981 boost::mutex::scoped_lock lock(mutex_);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1982
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1983 int64_t top;
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1984 if (!db_.LookupResource(top, type, publicId))
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1985 {
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1986 throw OrthancException(ErrorCode_UnknownResource);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1987 }
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1988
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1989 std::stack<int64_t> toExplore;
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1990 toExplore.push(top);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1991
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1992 countInstances = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1993 countSeries = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1994 countStudies = 0;
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
1995 diskSize = 0;
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1996 uncompressedSize = 0;
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
1997 dicomDiskSize = 0;
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
1998 dicomUncompressedSize = 0;
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1999
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2000 while (!toExplore.empty())
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2001 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2002 // Get the internal ID of the current resource
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2003 int64_t resource = toExplore.top();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2004 toExplore.pop();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2005
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2006 ResourceType thisType = db_.GetResourceType(resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2007
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2008 std::list<FileContentType> f;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2009 db_.ListAvailableAttachments(f, resource);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2010
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2011 for (std::list<FileContentType>::const_iterator
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2012 it = f.begin(); it != f.end(); ++it)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2013 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2014 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2015 if (db_.LookupAttachment(attachment, resource, *it))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2016 {
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2017 if (attachment.GetContentType() == FileContentType_Dicom)
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2018 {
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2019 dicomDiskSize += attachment.GetCompressedSize();
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2020 dicomUncompressedSize += attachment.GetUncompressedSize();
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2021 }
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2022
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2023 diskSize += attachment.GetCompressedSize();
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2024 uncompressedSize += attachment.GetUncompressedSize();
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2025 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2026 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2027
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2028 if (thisType == ResourceType_Instance)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2029 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2030 countInstances++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2031 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2032 else
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2033 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2034 switch (thisType)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2035 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2036 case ResourceType_Study:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2037 countStudies++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2038 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2039
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2040 case ResourceType_Series:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2041 countSeries++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2042 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2043
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2044 default:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2045 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2046 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2047
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2048 // Tag all the children of this resource as to be explored
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2049 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2050 db_.GetChildrenInternalId(tmp, resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2051 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
2052 it = tmp.begin(); it != tmp.end(); ++it)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2053 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2054 toExplore.push(*it);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2055 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2056 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2057 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2058
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2059 if (countStudies == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2060 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2061 countStudies = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2062 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2063
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2064 if (countSeries == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2065 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2066 countSeries = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2067 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2068 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2069
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2070
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2071 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2072 unsigned int threadSleep)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2073 {
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2074 int stableAge;
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2075
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2076 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2077 OrthancConfiguration::ReaderLock lock;
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2078 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60);
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2079 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2080
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2081 if (stableAge <= 0)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2082 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2083 stableAge = 60;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2084 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2085
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2086 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2087
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2088 while (!that->done_)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2089 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2090 // Check for stable resources each few seconds
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2091 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep));
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2092
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2093 boost::mutex::scoped_lock lock(that->mutex_);
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2094
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2095 while (!that->unstableResources_.IsEmpty() &&
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2096 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge))
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2097 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2098 // This DICOM resource has not received any new instance for
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2099 // some time. It can be considered as stable.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2100
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2101 UnstableResourcePayload payload;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2102 int64_t id = that->unstableResources_.RemoveOldest(payload);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2103
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2104 // Ensure that the resource is still existing before logging the change
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2105 if (that->db_.IsExistingResource(id))
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2106 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2107 switch (payload.GetResourceType())
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2108 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2109 case ResourceType_Patient:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2110 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2111 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2112
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2113 case ResourceType_Study:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2114 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2115 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2116
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2117 case ResourceType_Series:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2118 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2119 break;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2120
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2121 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2122 throw OrthancException(ErrorCode_InternalError);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2123 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2124
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2125 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2126 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2127 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2128 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2129
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2130 LOG(INFO) << "Closing the monitor thread for stable resources";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2131 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2132
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2133
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2134 void ServerIndex::MarkAsUnstable(int64_t id,
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2135 Orthanc::ResourceType type,
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2136 const std::string& publicId)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2137 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2138 // WARNING: Before calling this method, "mutex_" must be locked.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2139
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2140 assert(type == Orthanc::ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2141 type == Orthanc::ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2142 type == Orthanc::ResourceType_Series);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2143
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2144 UnstableResourcePayload payload(type, publicId);
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2145 unstableResources_.AddOrMakeMostRecent(id, payload);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2146 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id;
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1177
diff changeset
2147
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2148 LogChange(id, ChangeType_NewChildInstance, type, publicId);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2149 }
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2150
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2151
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2152
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2153 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result,
1728
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2154 ResourceType level,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2155 const DicomTag& tag,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2156 const std::string& value)
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2157 {
1727
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2158 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2159 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2160 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2161 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2162 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID));
1725
a7c05bbfaf6a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
2163
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2164 result.clear();
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2165
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2166 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true);
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2167
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2168 std::vector<DatabaseConstraint> query;
3073
0e9d1731b1b0 refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3061
diff changeset
2169 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier));
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2170
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2171 std::list<std::string> tmp;
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2172
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2173 {
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2174 boost::mutex::scoped_lock lock(mutex_);
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2175 db_.ApplyLookupResources(tmp, NULL, query, level, 0);
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2176 }
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2177
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2178 CopyListToVector(result, tmp);
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2179 }
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2180
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2181
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2182 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment,
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2183 const std::string& publicId)
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2184 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2185 boost::mutex::scoped_lock lock(mutex_);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2186
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2187 Transaction t(*this);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2188
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2189 ResourceType resourceType;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2190 int64_t resourceId;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2191 if (!db_.LookupResource(resourceId, resourceType, publicId))
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2192 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2193 return StoreStatus_Failure; // Inexistent resource
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2194 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2195
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2196 // Remove possible previous attachment
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2197 db_.DeleteAttachment(resourceId, attachment.GetContentType());
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2198
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2199 // Locate the patient of the target resource
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2200 int64_t patientId = resourceId;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2201 for (;;)
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2202 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2203 int64_t parent;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2204 if (db_.LookupParent(parent, patientId))
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2205 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2206 // We have not reached the patient level yet
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2207 patientId = parent;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2208 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2209 else
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2210 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2211 // We have reached the patient level
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2212 break;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2213 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2214 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2215
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2216 // Possibly apply the recycling mechanism while preserving this patient
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2217 assert(db_.GetResourceType(patientId) == ResourceType_Patient);
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2218 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId));
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2219
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2220 db_.AddAttachment(resourceId, attachment);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2221
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2222 if (IsUserContentType(attachment.GetContentType()))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2223 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2224 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2225 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2226
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2227 t.Commit(attachment.GetCompressedSize());
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2228
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2229 return StoreStatus_Success;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2230 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2231
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2232
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2233 void ServerIndex::DeleteAttachment(const std::string& publicId,
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2234 FileContentType type)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2235 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2236 boost::mutex::scoped_lock lock(mutex_);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2237 Transaction t(*this);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2238
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2239 ResourceType rtype;
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2240 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2241 if (!db_.LookupResource(id, rtype, publicId))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2242 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2243 throw OrthancException(ErrorCode_UnknownResource);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2244 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2245
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2246 db_.DeleteAttachment(id, type);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2247
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2248 if (IsUserContentType(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2249 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2250 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2251 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2252
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2253 t.Commit(0);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2254 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2255
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2256
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2257 void ServerIndex::SetGlobalProperty(GlobalProperty property,
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2258 const std::string& value)
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2259 {
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2260 boost::mutex::scoped_lock lock(mutex_);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
2261
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
2262 Transaction transaction(*this);
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2263 db_.SetGlobalProperty(property, value);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
2264 transaction.Commit(0);
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2265 }
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2266
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2267
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2268 bool ServerIndex::LookupGlobalProperty(std::string& value,
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2269 GlobalProperty property)
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2270 {
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2271 boost::mutex::scoped_lock lock(mutex_);
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2272 return db_.LookupGlobalProperty(value, property);
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2273 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2274
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2275
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2276 std::string ServerIndex::GetGlobalProperty(GlobalProperty property,
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2277 const std::string& defaultValue)
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2278 {
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2279 std::string value;
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2280
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2281 if (LookupGlobalProperty(value, property))
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2282 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2283 return value;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2284 }
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2285 else
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2286 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2287 return defaultValue;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2288 }
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2289 }
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2290
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2291
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2292 bool ServerIndex::GetMainDicomTags(DicomMap& result,
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2293 const std::string& publicId,
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2294 ResourceType expectedType,
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2295 ResourceType levelOfInterest)
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2296 {
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2297 // Yes, the following test could be shortened, but we wish to make it as clear as possible
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2298 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2299 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2300 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2301 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2302 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance))
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2303 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2304 throw OrthancException(ErrorCode_ParameterOutOfRange);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2305 }
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2306
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2307 result.Clear();
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2308
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2309 boost::mutex::scoped_lock lock(mutex_);
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2310
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2311 // Lookup for the requested resource
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2312 int64_t id;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2313 ResourceType type;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2314 if (!db_.LookupResource(id, type, publicId) ||
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2315 type != expectedType)
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2316 {
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2317 return false;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2318 }
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2319
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2320 if (type == ResourceType_Study)
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2321 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2322 DicomMap tmp;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2323 db_.GetMainDicomTags(tmp, id);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2324
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2325 switch (levelOfInterest)
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2326 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2327 case ResourceType_Patient:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2328 tmp.ExtractPatientInformation(result);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2329 return true;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2330
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2331 case ResourceType_Study:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2332 tmp.ExtractStudyInformation(result);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2333 return true;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2334
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2335 default:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2336 throw OrthancException(ErrorCode_InternalError);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2337 }
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2338 }
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2339 else
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2340 {
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2341 db_.GetMainDicomTags(result, id);
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2342 return true;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2343 }
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2344 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2345
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2346
3006
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2347 bool ServerIndex::GetAllMainDicomTags(DicomMap& result,
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2348 const std::string& instancePublicId)
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2349 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2350 result.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2351
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2352 boost::mutex::scoped_lock lock(mutex_);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2353
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2354 // Lookup for the requested resource
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2355 int64_t instance;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2356 ResourceType type;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2357 if (!db_.LookupResource(instance, type, instancePublicId) ||
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2358 type != ResourceType_Instance)
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2359 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2360 return false;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2361 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2362 else
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2363 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2364 DicomMap tmp;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2365
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2366 db_.GetMainDicomTags(tmp, instance);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2367 result.Merge(tmp);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2368
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2369 int64_t series;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2370 if (!db_.LookupParent(series, instance))
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2371 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2372 throw OrthancException(ErrorCode_InternalError);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2373 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2374
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2375 tmp.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2376 db_.GetMainDicomTags(tmp, series);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2377 result.Merge(tmp);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2378
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2379 int64_t study;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2380 if (!db_.LookupParent(study, series))
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2381 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2382 throw OrthancException(ErrorCode_InternalError);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2383 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2384
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2385 tmp.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2386 db_.GetMainDicomTags(tmp, study);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2387 result.Merge(tmp);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2388
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2389 #ifndef NDEBUG
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2390 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2391 // Sanity test to check that all the main DICOM tags from the
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2392 // patient level are copied at the study level
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2393
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2394 int64_t patient;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2395 if (!db_.LookupParent(patient, study))
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2396 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2397 throw OrthancException(ErrorCode_InternalError);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2398 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2399
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2400 tmp.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2401 db_.GetMainDicomTags(tmp, study);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2402
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2403 std::set<DicomTag> patientTags;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2404 tmp.GetTags(patientTags);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2405
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2406 for (std::set<DicomTag>::const_iterator
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2407 it = patientTags.begin(); it != patientTags.end(); ++it)
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2408 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2409 assert(result.HasTag(*it));
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2410 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2411 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2412 #endif
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2413
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2414 return true;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2415 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2416 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2417
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2418
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2419 bool ServerIndex::LookupResourceType(ResourceType& type,
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2420 const std::string& publicId)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2421 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2422 boost::mutex::scoped_lock lock(mutex_);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2423
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2424 int64_t id;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2425 return db_.LookupResource(id, type, publicId);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2426 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2427
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2428
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2429 unsigned int ServerIndex::GetDatabaseVersion()
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2430 {
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2431 boost::mutex::scoped_lock lock(mutex_);
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2432 return db_.GetDatabaseVersion();
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2433 }
1750
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2434
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2435
1898
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2436 bool ServerIndex::LookupParent(std::string& target,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2437 const std::string& publicId,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2438 ResourceType parentType)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2439 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2440 boost::mutex::scoped_lock lock(mutex_);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2441
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2442 ResourceType type;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2443 int64_t id;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2444 if (!db_.LookupResource(id, type, publicId))
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2445 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2446 throw OrthancException(ErrorCode_UnknownResource);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2447 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2448
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2449 while (type != parentType)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2450 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2451 int64_t parentId;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2452
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2453 if (type == ResourceType_Patient || // Cannot further go up in hierarchy
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2454 !db_.LookupParent(parentId, id))
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2455 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2456 return false;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2457 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2458
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2459 id = parentId;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2460 type = GetParentResourceType(type);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2461 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2462
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2463 target = db_.GetPublicId(id);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2464 return true;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2465 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2466
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2467
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2468 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2469 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2470 DicomMap summary;
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
2471 OrthancConfiguration::DefaultExtractDicomSummary(summary, dicom);
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2472
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2473 DicomInstanceHasher hasher(summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2474
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2475 boost::mutex::scoped_lock lock(mutex_);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2476
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2477 try
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2478 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2479 Transaction t(*this);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2480
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2481 int64_t patient = -1, study = -1, series = -1, instance = -1;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2482
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2483 ResourceType dummy;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2484 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2485 !db_.LookupResource(study, dummy, hasher.HashStudy()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2486 !db_.LookupResource(series, dummy, hasher.HashSeries()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2487 !db_.LookupResource(instance, dummy, hasher.HashInstance()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2488 patient == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2489 study == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2490 series == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2491 instance == -1)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2492 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2493 throw OrthancException(ErrorCode_InternalError);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2494 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2495
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2496 db_.ClearMainDicomTags(patient);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2497 db_.ClearMainDicomTags(study);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2498 db_.ClearMainDicomTags(series);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2499 db_.ClearMainDicomTags(instance);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2500
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2501 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2502 ResourcesContent content;
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2503 content.AddResource(patient, ResourceType_Patient, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2504 content.AddResource(study, ResourceType_Study, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2505 content.AddResource(series, ResourceType_Series, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2506 content.AddResource(instance, ResourceType_Instance, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2507 db_.SetResourcesContent(content);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2508 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2509
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2510 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2511 std::string s;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2512 if (dicom.LookupTransferSyntax(s))
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2513 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2514 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2515 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2516 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2517
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2518 const DicomValue* value;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2519 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2520 !value->IsNull() &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2521 !value->IsBinary())
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2522 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2523 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent());
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2524 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2525
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2526 t.Commit(0); // No change in the DB size
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2527 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2528 catch (OrthancException& e)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2529 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2530 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2531 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2532 }
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2533
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2534
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2535 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target,
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2536 const DatabaseLookup& source,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2537 ResourceType queryLevel) const
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2538 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2539 assert(mainDicomTagsRegistry_.get() != NULL);
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2540
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2541 target.clear();
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2542 target.reserve(source.GetConstraintsCount());
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2543
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2544 for (size_t i = 0; i < source.GetConstraintsCount(); i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2545 {
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2546 ResourceType level;
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2547 DicomTagType type;
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2548
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2549 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag());
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2550
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2551 if (type == DicomTagType_Identifier ||
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2552 type == DicomTagType_Main)
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2553 {
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2554 // Use the fact that patient-level tags are copied at the study level
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2555 if (level == ResourceType_Patient &&
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2556 queryLevel != ResourceType_Patient)
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2557 {
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2558 level = ResourceType_Study;
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2559 }
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2560
3073
0e9d1731b1b0 refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3061
diff changeset
2561 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type));
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2562 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2563 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2564 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2565
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2566
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2567 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId,
3036
8fd203510d8b moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3034
diff changeset
2568 std::vector<std::string>* instancesId,
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2569 const DatabaseLookup& lookup,
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2570 ResourceType queryLevel,
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2571 size_t limit)
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2572 {
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2573 std::vector<DatabaseConstraint> normalized;
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2574 NormalizeLookup(normalized, lookup, queryLevel);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2575
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2576 std::list<std::string> resourcesList, instancesList;
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2577
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2578 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2579 boost::mutex::scoped_lock lock(mutex_);
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2580
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2581 if (instancesId == NULL)
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2582 {
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2583 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit);
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2584 }
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2585 else
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2586 {
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2587 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit);
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2588 }
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2589 }
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2590
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2591 CopyListToVector(resourcesId, resourcesList);
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2592
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2593 if (instancesId != NULL)
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2594 {
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2595 CopyListToVector(*instancesId, instancesList);
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2596 }
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2597 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2598 }