Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2069:fabf7820d1f1
New configuration options: "DicomScuTimeout" and "DicomScpTimeout" + validation of non-negative options
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 13 Jul 2016 16:52:39 +0200 |
| parents | b1291df2f780 |
| children | 1824a02e0951 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "PrecompiledHeadersServer.h" |
| 0 | 34 #include "ServerIndex.h" |
| 35 | |
| 6 | 36 #ifndef NOMINMAX |
| 2 | 37 #define NOMINMAX |
| 6 | 38 #endif |
| 39 | |
| 1198 | 40 #include "ServerIndexChange.h" |
| 8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
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43 #include "ServerToolbox.h" |
| 0 | 44 #include "../Core/Toolbox.h" |
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45 #include "../Core/Logging.h" |
| 0 | 46 #include "../Core/Uuid.h" |
| 47 #include "../Core/DicomFormat/DicomArray.h" | |
| 1747 | 48 #include "Search/LookupIdentifierQuery.h" |
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49 #include "Search/LookupResource.h" |
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50 |
| 0 | 51 #include "FromDcmtkBridge.h" |
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52 #include "ServerContext.h" |
| 1822 | 53 #include "DicomInstanceToStore.h" |
| 0 | 54 |
| 55 #include <boost/lexical_cast.hpp> | |
| 56 #include <stdio.h> | |
| 57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
| 62 | 60 namespace Orthanc |
| 0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
| 0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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140 |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
| 1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
| 0 | 212 |
| 213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
| 1235 | 218 std::auto_ptr<SQLite::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
| 1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
| 1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
| 230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 transaction_->Commit(); |
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249 |
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250 // We can remove the files once the SQLite transaction has |
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251 // been successfully committed. Some files might have to be |
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252 // deleted because of recycling. |
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253 index_.listener_->CommitFilesToRemove(); |
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254 |
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255 index_.currentStorageSize_ += sizeOfAddedFiles; |
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256 |
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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259 |
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260 // Send all the pending changes to the Orthanc plugins |
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261 index_.listener_->CommitChanges(); |
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262 |
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263 isCommitted_ = true; |
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264 } |
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265 } |
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266 }; |
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267 |
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268 |
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269 class ServerIndex::UnstableResourcePayload |
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270 { |
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271 private: |
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272 ResourceType type_; |
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273 std::string publicId_; |
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274 boost::posix_time::ptime time_; |
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275 |
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276 public: |
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277 UnstableResourcePayload() : type_(ResourceType_Instance) |
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278 { |
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279 } |
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280 |
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281 UnstableResourcePayload(Orthanc::ResourceType type, |
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282 const std::string& publicId) : |
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283 type_(type), |
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284 publicId_(publicId) |
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285 { |
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286 time_ = boost::posix_time::second_clock::local_time(); |
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287 } |
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288 |
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289 unsigned int GetAge() const |
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290 { |
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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292 } |
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293 |
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294 ResourceType GetResourceType() const |
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295 { |
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296 return type_; |
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297 } |
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298 |
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299 const std::string& GetPublicId() const |
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300 { |
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301 return publicId_; |
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302 } |
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303 }; |
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304 |
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305 |
| 212 | 306 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 307 const std::string& uuid, |
| 202 | 308 ResourceType expectedType) |
| 0 | 309 { |
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310 boost::mutex::scoped_lock lock(mutex_); |
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311 |
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312 Transaction t(*this); |
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313 |
| 202 | 314 int64_t id; |
| 315 ResourceType type; | |
| 1294 | 316 if (!db_.LookupResource(id, type, uuid) || |
| 202 | 317 expectedType != type) |
| 0 | 318 { |
| 319 return false; | |
| 320 } | |
| 202 | 321 |
| 1247 | 322 db_.DeleteResource(id); |
| 0 | 323 |
| 202 | 324 if (listener_->HasRemainingLevel()) |
| 0 | 325 { |
| 202 | 326 ResourceType type = listener_->GetRemainingType(); |
| 327 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 328 |
| 329 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
|
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
| 0 | 332 target["RemainingAncestor"]["ID"] = uuid; |
| 333 } | |
| 334 else | |
| 335 { | |
| 336 target["RemainingAncestor"] = Json::nullValue; | |
| 337 } | |
| 338 | |
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339 t.Commit(0); |
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340 |
| 0 | 341 return true; |
| 342 } | |
| 343 | |
| 344 | |
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345 void ServerIndex::FlushThread(ServerIndex* that) |
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346 { |
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347 // By default, wait for 10 seconds before flushing |
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348 unsigned int sleep = 10; |
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349 |
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350 try |
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351 { |
| 744 | 352 boost::mutex::scoped_lock lock(that->mutex_); |
| 1239 | 353 std::string sleepString; |
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354 |
| 1247 | 355 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
| 1239 | 356 Toolbox::IsInteger(sleepString)) |
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357 { |
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358 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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359 } |
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360 } |
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361 catch (boost::bad_lexical_cast&) |
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362 { |
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363 } |
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364 |
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365 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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366 |
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367 unsigned int count = 0; |
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368 |
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369 while (!that->done_) |
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370 { |
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371 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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372 count++; |
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373 if (count < sleep) |
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374 { |
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375 continue; |
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376 } |
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377 |
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378 boost::mutex::scoped_lock lock(that->mutex_); |
| 1247 | 379 that->db_.FlushToDisk(); |
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380 count = 0; |
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381 } |
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382 |
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383 LOG(INFO) << "Stopping the database flushing thread"; |
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384 } |
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385 |
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386 |
| 1247 | 387 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
| 433 | 388 int64_t series, |
| 389 const DicomMap& dicomSummary) | |
| 390 { | |
| 391 try | |
| 392 { | |
| 656 | 393 const DicomValue* value; |
| 394 const DicomValue* value2; | |
| 395 | |
| 433 | 396 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
| 397 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
| 398 { | |
| 399 // Patch for series with temporal positions thanks to Will Ryder | |
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400 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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401 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
| 433 | 402 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
| 403 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 404 } | |
| 405 | |
| 406 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
| 407 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
| 408 { | |
| 409 // Support of Cardio-PET images | |
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410 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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411 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
| 433 | 412 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
| 413 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 414 } | |
| 415 | |
| 416 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 417 { | |
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418 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
| 433 | 419 } |
| 420 } | |
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421 catch (OrthancException&) |
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422 { |
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423 } |
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424 catch (boost::bad_lexical_cast&) |
| 433 | 425 { |
| 426 } | |
| 427 } | |
| 428 | |
| 429 | |
| 1237 | 430 |
| 431 | |
| 1238 | 432 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
| 1237 | 433 int64_t id, |
| 434 MetadataType type) | |
| 435 { | |
| 1238 | 436 std::string s; |
| 1247 | 437 if (!db_.LookupMetadata(s, id, type)) |
| 1237 | 438 { |
| 439 return false; | |
| 440 } | |
| 441 | |
| 442 try | |
| 443 { | |
| 1238 | 444 result = boost::lexical_cast<int64_t>(s); |
| 1237 | 445 return true; |
| 446 } | |
| 447 catch (boost::bad_lexical_cast&) | |
| 448 { | |
| 449 return false; | |
| 450 } | |
| 451 } | |
| 452 | |
| 453 | |
| 1297 | 454 void ServerIndex::LogChange(int64_t internalId, |
| 455 ChangeType changeType, | |
| 456 ResourceType resourceType, | |
| 457 const std::string& publicId) | |
| 458 { | |
| 459 ServerIndexChange change(changeType, resourceType, publicId); | |
|
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460 |
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461 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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462 { |
|
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463 db_.LogChange(internalId, change); |
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464 } |
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465 |
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466 assert(listener_.get() != NULL); |
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467 listener_->SignalChange(change); |
| 1297 | 468 } |
| 469 | |
| 1237 | 470 |
| 471 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
| 472 { | |
| 473 std::string oldValue; | |
| 474 | |
| 1247 | 475 if (db_.LookupGlobalProperty(oldValue, property)) |
| 1237 | 476 { |
| 477 uint64_t oldNumber; | |
| 478 | |
| 479 try | |
| 480 { | |
| 481 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 1247 | 482 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
| 1237 | 483 return oldNumber + 1; |
| 484 } | |
| 485 catch (boost::bad_lexical_cast&) | |
| 486 { | |
| 487 throw OrthancException(ErrorCode_InternalError); | |
| 488 } | |
| 489 } | |
| 490 else | |
| 491 { | |
| 492 // Initialize the sequence at "1" | |
| 1247 | 493 db_.SetGlobalProperty(property, "1"); |
| 1237 | 494 return 1; |
| 495 } | |
| 496 } | |
| 497 | |
| 498 | |
| 499 | |
| 1299 | 500 int64_t ServerIndex::CreateResource(const std::string& publicId, |
| 501 ResourceType type) | |
| 502 { | |
| 503 int64_t id = db_.CreateResource(publicId, type); | |
| 504 | |
| 505 ChangeType changeType; | |
| 506 switch (type) | |
| 507 { | |
| 508 case ResourceType_Patient: | |
| 509 changeType = ChangeType_NewPatient; | |
| 510 break; | |
| 511 | |
| 512 case ResourceType_Study: | |
| 513 changeType = ChangeType_NewStudy; | |
| 514 break; | |
| 515 | |
| 516 case ResourceType_Series: | |
| 517 changeType = ChangeType_NewSeries; | |
| 518 break; | |
| 519 | |
| 520 case ResourceType_Instance: | |
| 521 changeType = ChangeType_NewInstance; | |
| 522 break; | |
| 523 | |
| 524 default: | |
| 525 throw OrthancException(ErrorCode_InternalError); | |
| 526 } | |
| 527 | |
| 528 ServerIndexChange change(changeType, type, publicId); | |
| 529 db_.LogChange(id, change); | |
|
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530 |
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531 assert(listener_.get() != NULL); |
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532 listener_->SignalChange(change); |
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533 |
| 1299 | 534 return id; |
| 535 } | |
| 536 | |
| 1286 | 537 |
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538 ServerIndex::ServerIndex(ServerContext& context, |
| 1247 | 539 IDatabaseWrapper& db) : |
|
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540 done_(false), |
| 1247 | 541 db_(db), |
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542 maximumStorageSize_(0), |
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543 maximumPatients_(0) |
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544 { |
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545 listener_.reset(new Listener(context)); |
| 1247 | 546 db_.SetListener(*listener_); |
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547 |
| 1247 | 548 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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549 |
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550 // Initial recycling if the parameters have changed since the last |
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551 // execution of Orthanc |
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552 StandaloneRecycling(); |
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553 |
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554 if (db.HasFlushToDisk()) |
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555 { |
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556 flushThread_ = boost::thread(FlushThread, this); |
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557 } |
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558 |
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559 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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560 } |
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561 |
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562 |
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563 |
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564 ServerIndex::~ServerIndex() |
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565 { |
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566 if (!done_) |
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567 { |
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568 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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569 Stop(); |
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570 } |
| 0 | 571 } |
| 572 | |
| 573 | |
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574 |
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575 void ServerIndex::Stop() |
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576 { |
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577 if (!done_) |
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578 { |
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579 done_ = true; |
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580 |
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581 if (db_.HasFlushToDisk() && |
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582 flushThread_.joinable()) |
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583 { |
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584 flushThread_.join(); |
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585 } |
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586 |
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587 if (unstableResourcesMonitorThread_.joinable()) |
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588 { |
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589 unstableResourcesMonitorThread_.join(); |
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590 } |
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591 } |
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592 } |
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593 |
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594 |
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595 |
|
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596 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
| 1822 | 597 DicomInstanceToStore& instanceToStore, |
| 598 const Attachments& attachments) | |
| 0 | 599 { |
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600 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 601 |
| 1822 | 602 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
| 603 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
| 604 | |
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605 instanceMetadata.clear(); |
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606 |
| 1822 | 607 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
| 0 | 608 |
| 609 try | |
| 610 { | |
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611 Transaction t(*this); |
| 0 | 612 |
| 202 | 613 // Do nothing if the instance already exists |
| 0 | 614 { |
| 432 | 615 ResourceType type; |
| 616 int64_t tmp; | |
| 1294 | 617 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
| 432 | 618 { |
| 619 assert(type == ResourceType_Instance); | |
| 1247 | 620 db_.GetAllMetadata(instanceMetadata, tmp); |
| 432 | 621 return StoreStatus_AlreadyStored; |
| 622 } | |
| 0 | 623 } |
| 624 | |
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625 // Ensure there is enough room in the storage for the new instance |
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626 uint64_t instanceSize = 0; |
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627 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 628 it != attachments.end(); ++it) |
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629 { |
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630 instanceSize += it->GetCompressedSize(); |
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631 } |
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632 |
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633 Recycle(instanceSize, hasher.HashPatient()); |
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634 |
| 202 | 635 // Create the instance |
| 1299 | 636 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
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637 Toolbox::SetMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
| 202 | 638 |
| 432 | 639 // Detect up to which level the patient/study/series/instance |
| 640 // hierarchy must be created | |
| 641 int64_t patient = -1, study = -1, series = -1; | |
| 642 bool isNewPatient = false; | |
| 643 bool isNewStudy = false; | |
| 644 bool isNewSeries = false; | |
| 645 | |
| 0 | 646 { |
| 432 | 647 ResourceType dummy; |
| 648 | |
| 1294 | 649 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
| 432 | 650 { |
| 651 assert(dummy == ResourceType_Series); | |
| 652 // The patient, the study and the series already exist | |
| 653 | |
| 1294 | 654 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
| 655 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
| 432 | 656 assert(ok); |
| 657 } | |
| 1294 | 658 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
| 432 | 659 { |
| 660 assert(dummy == ResourceType_Study); | |
| 661 | |
| 662 // New series: The patient and the study already exist | |
| 663 isNewSeries = true; | |
| 664 | |
| 1294 | 665 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
| 432 | 666 assert(ok); |
| 667 } | |
| 1294 | 668 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
| 432 | 669 { |
| 670 assert(dummy == ResourceType_Patient); | |
| 671 | |
| 672 // New study and series: The patient already exist | |
| 673 isNewStudy = true; | |
| 674 isNewSeries = true; | |
| 675 } | |
| 676 else | |
| 677 { | |
| 678 // New patient, study and series: Nothing exists | |
| 679 isNewPatient = true; | |
| 680 isNewStudy = true; | |
| 681 isNewSeries = true; | |
| 682 } | |
| 683 } | |
| 684 | |
| 685 // Create the series if needed | |
| 686 if (isNewSeries) | |
| 687 { | |
| 1299 | 688 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
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689 Toolbox::SetMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
| 432 | 690 } |
| 202 | 691 |
| 432 | 692 // Create the study if needed |
| 693 if (isNewStudy) | |
| 694 { | |
| 1299 | 695 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
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696 Toolbox::SetMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
| 432 | 697 } |
| 698 | |
| 699 // Create the patient if needed | |
| 700 if (isNewPatient) | |
| 701 { | |
| 1299 | 702 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
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703 Toolbox::SetMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
| 432 | 704 } |
| 202 | 705 |
| 432 | 706 // Create the parent-to-child links |
| 1247 | 707 db_.AttachChild(series, instance); |
| 432 | 708 |
| 709 if (isNewSeries) | |
| 710 { | |
| 1247 | 711 db_.AttachChild(study, series); |
| 0 | 712 } |
| 432 | 713 |
| 714 if (isNewStudy) | |
| 0 | 715 { |
| 1247 | 716 db_.AttachChild(patient, study); |
| 0 | 717 } |
| 718 | |
| 432 | 719 // Sanity checks |
| 720 assert(patient != -1); | |
| 721 assert(study != -1); | |
| 722 assert(series != -1); | |
| 723 assert(instance != -1); | |
| 724 | |
| 202 | 725 // Attach the files to the newly created instance |
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726 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 727 it != attachments.end(); ++it) |
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728 { |
| 1247 | 729 db_.AddAttachment(instance, *it); |
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730 } |
| 202 | 731 |
|
1002
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anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
732 // Attach the user-specified metadata |
|
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
733 for (MetadataMap::const_iterator |
|
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
734 it = metadata.begin(); it != metadata.end(); ++it) |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
735 { |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
736 switch (it->first.first) |
|
1002
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
737 { |
|
1006
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proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
738 case ResourceType_Patient: |
| 1247 | 739 db_.SetMetadata(patient, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
740 break; |
|
1002
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
741 |
|
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
742 case ResourceType_Study: |
| 1247 | 743 db_.SetMetadata(study, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
744 break; |
|
1002
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
745 |
|
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
746 case ResourceType_Series: |
| 1247 | 747 db_.SetMetadata(series, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
748 break; |
|
1002
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
749 |
|
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
750 case ResourceType_Instance: |
| 1247 | 751 db_.SetMetadata(instance, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
752 instanceMetadata[it->first.second] = it->second; |
|
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
753 break; |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
754 |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
755 default: |
|
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
756 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
757 } |
|
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
758 } |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
759 |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
760 // Attach the auto-computed metadata for the patient/study/series levels |
| 432 | 761 std::string now = Toolbox::GetNowIsoString(); |
| 1247 | 762 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
| 763 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
| 764 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
765 |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
766 // Attach the auto-computed metadata for the instance level, |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
767 // reflecting these additions into the input metadata map |
| 1247 | 768 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
|
1006
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proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
769 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
| 202 | 770 |
| 1822 | 771 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); |
| 772 instanceMetadata[MetadataType_Instance_RemoteAet] = instanceToStore.GetRemoteAet(); | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
773 |
|
1823
0ef4e6e66b56
"Origin" metadata for the instances
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parents:
1822
diff
changeset
|
774 { |
|
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
775 std::string s = EnumerationToString(instanceToStore.GetRequestOrigin()); |
|
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
776 db_.SetMetadata(instance, MetadataType_Instance_Origin, s); |
|
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
777 instanceMetadata[MetadataType_Instance_Origin] = s; |
|
0ef4e6e66b56
"Origin" metadata for the instances
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parents:
1822
diff
changeset
|
778 } |
|
0ef4e6e66b56
"Origin" metadata for the instances
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parents:
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diff
changeset
|
779 |
| 202 | 780 const DicomValue* value; |
| 781 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
| 782 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 783 { |
|
1737
ec66a16aa398
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parents:
1725
diff
changeset
|
784 if (!value->IsNull() && |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
785 !value->IsBinary()) |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
786 { |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
1725
diff
changeset
|
787 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
788 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->GetContent(); |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
1725
diff
changeset
|
789 } |
| 0 | 790 } |
| 791 | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
792 // Check whether the series of this new instance is now completed |
| 202 | 793 if (isNewSeries) |
| 794 { | |
| 1247 | 795 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
| 202 | 796 } |
| 797 | |
|
205
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logging of completed series
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parents:
204
diff
changeset
|
798 SeriesStatus seriesStatus = GetSeriesStatus(series); |
|
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logging of completed series
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204
diff
changeset
|
799 if (seriesStatus == SeriesStatus_Complete) |
|
6ab754744446
logging of completed series
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parents:
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diff
changeset
|
800 { |
| 1237 | 801 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
|
205
6ab754744446
logging of completed series
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parents:
204
diff
changeset
|
802 } |
|
6ab754744446
logging of completed series
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parents:
204
diff
changeset
|
803 |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
804 // Mark the parent resources of this instance as unstable |
|
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
805 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
|
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
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diff
changeset
|
806 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
|
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
1162
diff
changeset
|
807 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
808 |
|
278
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more efficient determination of storage size for recycling
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parents:
273
diff
changeset
|
809 t.Commit(instanceSize); |
|
268
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preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
810 |
| 0 | 811 return StoreStatus_Success; |
| 812 } | |
| 62 | 813 catch (OrthancException& e) |
| 0 | 814 { |
| 1247 | 815 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
| 0 | 816 } |
| 817 | |
| 818 return StoreStatus_Failure; | |
| 819 } | |
| 820 | |
| 821 | |
| 238 | 822 void ServerIndex::ComputeStatistics(Json::Value& target) |
| 0 | 823 { |
|
206
4453a010d0db
flush to disk thread
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parents:
205
diff
changeset
|
824 boost::mutex::scoped_lock lock(mutex_); |
| 238 | 825 target = Json::objectValue; |
| 0 | 826 |
|
278
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more efficient determination of storage size for recycling
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diff
changeset
|
827 uint64_t cs = currentStorageSize_; |
| 1247 | 828 assert(cs == db_.GetTotalCompressedSize()); |
| 829 uint64_t us = db_.GetTotalUncompressedSize(); | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
830 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
| 238 | 831 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
|
1310
61ce8147f30d
custom database back-end
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parents:
1306
diff
changeset
|
832 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
|
61ce8147f30d
custom database back-end
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parents:
1306
diff
changeset
|
833 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
| 238 | 834 |
| 1247 | 835 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
| 836 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
| 837 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
| 838 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
| 238 | 839 } |
| 840 | |
|
187
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refactoring of storing new instances
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parents:
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diff
changeset
|
841 |
|
8e673a65564d
refactoring of storing new instances
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changeset
|
842 |
| 585 | 843 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
| 199 | 844 { |
| 845 // Get the expected number of instances in this series (from the metadata) | |
| 1238 | 846 int64_t expected; |
| 847 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
| 199 | 848 { |
| 849 return SeriesStatus_Unknown; | |
| 850 } | |
| 851 | |
| 852 // Loop over the instances of this series | |
| 853 std::list<int64_t> children; | |
| 1247 | 854 db_.GetChildrenInternalId(children, id); |
| 199 | 855 |
| 1238 | 856 std::set<int64_t> instances; |
| 199 | 857 for (std::list<int64_t>::const_iterator |
| 656 | 858 it = children.begin(); it != children.end(); ++it) |
| 199 | 859 { |
| 860 // Get the index of this instance in the series | |
| 1238 | 861 int64_t index; |
| 862 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
| 199 | 863 { |
| 864 return SeriesStatus_Unknown; | |
| 865 } | |
| 866 | |
| 656 | 867 if (!(index > 0 && index <= expected)) |
| 199 | 868 { |
| 869 // Out-of-range instance index | |
| 870 return SeriesStatus_Inconsistent; | |
| 871 } | |
| 872 | |
| 873 if (instances.find(index) != instances.end()) | |
| 874 { | |
| 875 // Twice the same instance index | |
| 876 return SeriesStatus_Inconsistent; | |
| 877 } | |
| 878 | |
| 879 instances.insert(index); | |
| 880 } | |
| 881 | |
| 1238 | 882 if (static_cast<int64_t>(instances.size()) == expected) |
| 199 | 883 { |
| 884 return SeriesStatus_Complete; | |
| 885 } | |
| 886 else | |
| 887 { | |
| 888 return SeriesStatus_Missing; | |
| 889 } | |
| 890 } | |
| 891 | |
| 892 | |
| 202 | 893 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
|
1668
de1413733c97
reconstructing main dicom tags
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parents:
1555
diff
changeset
|
894 int64_t resourceId, |
|
de1413733c97
reconstructing main dicom tags
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parents:
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diff
changeset
|
895 ResourceType resourceType) |
|
198
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before refactoring of ServerIndex::GetXXX
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changeset
|
896 { |
|
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
897 DicomMap tags; |
| 1247 | 898 db_.GetMainDicomTags(tags, resourceId); |
|
1676
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
899 |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
900 if (resourceType == ResourceType_Study) |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
901 { |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
902 DicomMap t1, t2; |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
903 tags.ExtractStudyInformation(t1); |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
904 tags.ExtractPatientInformation(t2); |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
905 |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
906 target["MainDicomTags"] = Json::objectValue; |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
907 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
|
f079f3efe33b
patient tags reported in studies
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parents:
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diff
changeset
|
908 |
|
f079f3efe33b
patient tags reported in studies
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1668
diff
changeset
|
909 target["PatientMainDicomTags"] = Json::objectValue; |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
910 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
|
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
911 } |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
912 else |
|
f079f3efe33b
patient tags reported in studies
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parents:
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diff
changeset
|
913 { |
|
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
914 target["MainDicomTags"] = Json::objectValue; |
|
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
915 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
|
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
916 } |
|
198
663cc6c46d0a
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changeset
|
917 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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changeset
|
918 |
|
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before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
919 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 920 const std::string& publicId, |
| 921 ResourceType expectedType) | |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
922 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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|
923 result = Json::objectValue; |
|
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diff
changeset
|
924 |
|
206
4453a010d0db
flush to disk thread
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diff
changeset
|
925 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 926 |
|
198
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|
927 // Lookup for the requested resource |
|
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|
928 int64_t id; |
|
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diff
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|
929 ResourceType type; |
| 1294 | 930 if (!db_.LookupResource(id, type, publicId) || |
| 199 | 931 type != expectedType) |
|
198
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|
932 { |
|
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|
933 return false; |
|
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diff
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|
934 } |
|
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diff
changeset
|
935 |
|
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diff
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|
936 // Find the parent resource (if it exists) |
|
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|
937 if (type != ResourceType_Patient) |
|
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|
938 { |
|
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diff
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|
939 int64_t parentId; |
| 1247 | 940 if (!db_.LookupParent(parentId, id)) |
|
198
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|
941 { |
|
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|
942 throw OrthancException(ErrorCode_InternalError); |
|
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|
943 } |
|
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|
944 |
| 1247 | 945 std::string parent = db_.GetPublicId(parentId); |
|
198
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|
946 |
|
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|
947 switch (type) |
|
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|
948 { |
|
269
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|
949 case ResourceType_Study: |
|
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|
950 result["ParentPatient"] = parent; |
|
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|
951 break; |
|
198
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|
952 |
|
269
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|
953 case ResourceType_Series: |
|
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|
954 result["ParentStudy"] = parent; |
|
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|
955 break; |
|
198
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|
956 |
|
269
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|
957 case ResourceType_Instance: |
|
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|
958 result["ParentSeries"] = parent; |
|
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|
959 break; |
|
198
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|
960 |
|
269
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|
961 default: |
|
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|
962 throw OrthancException(ErrorCode_InternalError); |
|
198
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|
963 } |
|
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|
964 } |
|
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|
965 |
|
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|
966 // List the children resources |
|
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|
967 std::list<std::string> children; |
| 1247 | 968 db_.GetChildrenPublicId(children, id); |
|
198
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|
969 |
|
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|
970 if (type != ResourceType_Instance) |
|
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|
971 { |
|
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|
972 Json::Value c = Json::arrayValue; |
|
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|
973 |
|
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|
974 for (std::list<std::string>::const_iterator |
| 656 | 975 it = children.begin(); it != children.end(); ++it) |
|
198
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|
976 { |
|
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|
977 c.append(*it); |
|
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|
978 } |
|
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changeset
|
979 |
|
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changeset
|
980 switch (type) |
|
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changeset
|
981 { |
|
269
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diff
changeset
|
982 case ResourceType_Patient: |
|
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|
983 result["Studies"] = c; |
|
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|
984 break; |
|
198
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diff
changeset
|
985 |
|
269
f6fdf5abe751
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diff
changeset
|
986 case ResourceType_Study: |
|
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|
987 result["Series"] = c; |
|
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diff
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|
988 break; |
|
198
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diff
changeset
|
989 |
|
269
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changeset
|
990 case ResourceType_Series: |
|
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|
991 result["Instances"] = c; |
|
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diff
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|
992 break; |
|
198
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diff
changeset
|
993 |
|
269
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|
994 default: |
|
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|
995 throw OrthancException(ErrorCode_InternalError); |
|
198
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diff
changeset
|
996 } |
|
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diff
changeset
|
997 } |
|
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diff
changeset
|
998 |
|
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changeset
|
999 // Set the resource type |
|
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|
1000 switch (type) |
|
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changeset
|
1001 { |
|
269
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changeset
|
1002 case ResourceType_Patient: |
|
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diff
changeset
|
1003 result["Type"] = "Patient"; |
|
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|
1004 break; |
|
198
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changeset
|
1005 |
|
269
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changeset
|
1006 case ResourceType_Study: |
|
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changeset
|
1007 result["Type"] = "Study"; |
|
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changeset
|
1008 break; |
| 199 | 1009 |
|
269
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|
1010 case ResourceType_Series: |
|
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|
1011 { |
|
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|
1012 result["Type"] = "Series"; |
|
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
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433
diff
changeset
|
1013 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
|
198
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|
1014 |
| 1238 | 1015 int64_t i; |
| 1237 | 1016 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
| 1238 | 1017 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
|
269
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|
1018 else |
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changeset
|
1019 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
9c58b2b03cf0
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199
diff
changeset
|
1020 |
|
269
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changeset
|
1021 break; |
|
200
9c58b2b03cf0
refactoring of read operations
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199
diff
changeset
|
1022 } |
|
9c58b2b03cf0
refactoring of read operations
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diff
changeset
|
1023 |
|
269
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changeset
|
1024 case ResourceType_Instance: |
|
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|
1025 { |
|
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|
1026 result["Type"] = "Instance"; |
|
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|
1027 |
|
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changeset
|
1028 FileInfo attachment; |
| 1247 | 1029 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
|
269
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|
1030 { |
|
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|
1031 throw OrthancException(ErrorCode_InternalError); |
|
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|
1032 } |
|
200
9c58b2b03cf0
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diff
changeset
|
1033 |
|
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|
1034 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
|
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|
1035 result["FileUuid"] = attachment.GetUuid(); |
|
200
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diff
changeset
|
1036 |
| 1238 | 1037 int64_t i; |
| 1237 | 1038 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
| 1238 | 1039 result["IndexInSeries"] = static_cast<int>(i); |
|
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|
1040 else |
|
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changeset
|
1041 result["IndexInSeries"] = Json::nullValue; |
|
198
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|
1042 |
|
269
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changeset
|
1043 break; |
|
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|
1044 } |
|
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changeset
|
1045 |
|
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changeset
|
1046 default: |
|
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changeset
|
1047 throw OrthancException(ErrorCode_InternalError); |
|
198
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1048 } |
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1049 |
|
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1050 // Record the remaining information |
|
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|
1051 result["ID"] = publicId; |
|
1668
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diff
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|
1052 MainDicomTagsToJson(result, id, type); |
|
198
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|
1053 |
| 315 | 1054 std::string tmp; |
| 1055 | |
| 1247 | 1056 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
| 1236 | 1057 { |
| 315 | 1058 result["AnonymizedFrom"] = tmp; |
| 1236 | 1059 } |
| 315 | 1060 |
| 1247 | 1061 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
| 1236 | 1062 { |
| 315 | 1063 result["ModifiedFrom"] = tmp; |
| 1236 | 1064 } |
| 315 | 1065 |
|
511
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|
1066 if (type == ResourceType_Patient || |
|
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|
1067 type == ResourceType_Study || |
|
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|
1068 type == ResourceType_Series) |
|
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|
1069 { |
|
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|
1070 result["IsStable"] = !unstableResources_.Contains(id); |
|
1148
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diff
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|
1071 |
| 1247 | 1072 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
| 1236 | 1073 { |
|
1148
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|
1074 result["LastUpdate"] = tmp; |
| 1236 | 1075 } |
|
511
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1076 } |
|
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1077 |
|
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1078 return true; |
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1079 } |
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1080 |
| 0 | 1081 |
|
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|
1082 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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1083 const std::string& instanceUuid, |
| 233 | 1084 FileContentType contentType) |
| 0 | 1085 { |
|
206
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1086 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 1087 |
|
193
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1088 int64_t id; |
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1089 ResourceType type; |
| 1294 | 1090 if (!db_.LookupResource(id, type, instanceUuid)) |
|
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1091 { |
|
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1092 throw OrthancException(ErrorCode_UnknownResource); |
|
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1093 } |
|
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1094 |
| 1247 | 1095 if (db_.LookupAttachment(attachment, id, contentType)) |
|
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1096 { |
| 233 | 1097 assert(attachment.GetContentType() == contentType); |
|
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1098 return true; |
|
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1099 } |
|
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1100 else |
|
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1101 { |
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1102 return false; |
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1103 } |
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1104 } |
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1105 |
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1106 |
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1107 |
| 1354 | 1108 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
| 190 | 1109 ResourceType resourceType) |
| 0 | 1110 { |
| 1357 | 1111 boost::mutex::scoped_lock lock(mutex_); |
| 1112 db_.GetAllPublicIds(target, resourceType); | |
| 0 | 1113 } |
| 1114 | |
| 1115 | |
|
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1116 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
|
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1117 ResourceType resourceType, |
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1118 size_t since, |
|
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|
1119 size_t limit) |
|
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1120 { |
|
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1121 if (limit == 0) |
|
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1122 { |
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|
1123 target.clear(); |
|
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|
1124 return; |
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1125 } |
|
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1126 |
|
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|
1127 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1128 db_.GetAllPublicIds(target, resourceType, since, limit); |
|
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|
1129 } |
|
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|
1130 |
|
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|
1131 |
| 1244 | 1132 template <typename T> |
| 1133 static void FormatLog(Json::Value& target, | |
| 1134 const std::list<T>& log, | |
| 1135 const std::string& name, | |
| 1136 bool done, | |
| 1137 int64_t since) | |
| 1240 | 1138 { |
| 1139 Json::Value items = Json::arrayValue; | |
| 1244 | 1140 for (typename std::list<T>::const_iterator |
| 1304 | 1141 it = log.begin(); it != log.end(); ++it) |
| 1240 | 1142 { |
| 1143 Json::Value item; | |
| 1144 it->Format(item); | |
| 1145 items.append(item); | |
| 1146 } | |
| 1147 | |
| 1148 target = Json::objectValue; | |
| 1244 | 1149 target[name] = items; |
| 1240 | 1150 target["Done"] = done; |
| 1151 | |
| 1305 | 1152 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
| 1240 | 1153 target["Last"] = static_cast<int>(last); |
| 1154 } | |
| 1155 | |
| 1156 | |
| 1247 | 1157 void ServerIndex::GetChanges(Json::Value& target, |
| 204 | 1158 int64_t since, |
| 0 | 1159 unsigned int maxResults) |
| 1160 { | |
| 1240 | 1161 std::list<ServerIndexChange> changes; |
| 1162 bool done; | |
| 1163 | |
| 1164 { | |
| 1165 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1166 db_.GetChanges(changes, done, since, maxResults); |
| 1240 | 1167 } |
| 1168 | |
| 1244 | 1169 FormatLog(target, changes, "Changes", done, since); |
|
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|
1170 } |
| 0 | 1171 |
| 1240 | 1172 |
| 1247 | 1173 void ServerIndex::GetLastChange(Json::Value& target) |
|
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|
1174 { |
| 1240 | 1175 std::list<ServerIndexChange> changes; |
| 1176 | |
| 1177 { | |
| 1178 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1179 db_.GetLastChange(changes); |
| 1240 | 1180 } |
| 1181 | |
| 1244 | 1182 FormatLog(target, changes, "Changes", true, 0); |
| 0 | 1183 } |
| 231 | 1184 |
| 1240 | 1185 |
| 231 | 1186 void ServerIndex::LogExportedResource(const std::string& publicId, |
| 1187 const std::string& remoteModality) | |
| 1188 { | |
| 1189 boost::mutex::scoped_lock lock(mutex_); | |
|
1310
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|
1190 Transaction transaction(*this); |
| 231 | 1191 |
| 1192 int64_t id; | |
| 1193 ResourceType type; | |
| 1294 | 1194 if (!db_.LookupResource(id, type, publicId)) |
| 231 | 1195 { |
| 1196 throw OrthancException(ErrorCode_InternalError); | |
| 1197 } | |
| 1198 | |
| 1199 std::string patientId; | |
| 1200 std::string studyInstanceUid; | |
| 1201 std::string seriesInstanceUid; | |
| 1202 std::string sopInstanceUid; | |
| 1203 | |
| 1204 int64_t currentId = id; | |
| 1205 ResourceType currentType = type; | |
| 1206 | |
| 1207 // Iteratively go up inside the patient/study/series/instance hierarchy | |
| 1208 bool done = false; | |
| 1209 while (!done) | |
| 1210 { | |
| 1211 DicomMap map; | |
| 1247 | 1212 db_.GetMainDicomTags(map, currentId); |
| 231 | 1213 |
| 1214 switch (currentType) | |
| 1215 { | |
|
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|
1216 case ResourceType_Patient: |
|
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|
1217 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
|
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1218 done = true; |
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|
1219 break; |
| 231 | 1220 |
|
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|
1221 case ResourceType_Study: |
|
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|
1222 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
|
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|
1223 currentType = ResourceType_Patient; |
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|
1224 break; |
| 231 | 1225 |
|
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|
1226 case ResourceType_Series: |
|
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|
1227 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
|
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1228 currentType = ResourceType_Study; |
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|
1229 break; |
| 231 | 1230 |
|
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|
1231 case ResourceType_Instance: |
|
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|
1232 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
|
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|
1233 currentType = ResourceType_Series; |
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1234 break; |
| 231 | 1235 |
|
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|
1236 default: |
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|
1237 throw OrthancException(ErrorCode_InternalError); |
| 231 | 1238 } |
| 1239 | |
| 1240 // If we have not reached the Patient level, find the parent of | |
| 1241 // the current resource | |
| 1242 if (!done) | |
| 1243 { | |
| 1247 | 1244 bool ok = db_.LookupParent(currentId, currentId); |
|
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|
1245 assert(ok); |
| 231 | 1246 } |
| 1247 } | |
| 1248 | |
| 1246 | 1249 ExportedResource resource(-1, |
| 1250 type, | |
| 1251 publicId, | |
| 1252 remoteModality, | |
| 1253 Toolbox::GetNowIsoString(), | |
| 1254 patientId, | |
| 1255 studyInstanceUid, | |
| 1256 seriesInstanceUid, | |
| 1257 sopInstanceUid); | |
|
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|
1258 |
| 1247 | 1259 db_.LogExportedResource(resource); |
|
1310
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|
1260 transaction.Commit(0); |
| 231 | 1261 } |
| 1262 | |
| 1263 | |
| 1247 | 1264 void ServerIndex::GetExportedResources(Json::Value& target, |
| 231 | 1265 int64_t since, |
| 1266 unsigned int maxResults) | |
| 1267 { | |
| 1244 | 1268 std::list<ExportedResource> exported; |
| 1269 bool done; | |
| 1270 | |
| 1271 { | |
| 1272 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1273 db_.GetExportedResources(exported, done, since, maxResults); |
| 1244 | 1274 } |
| 1275 | |
| 1276 FormatLog(target, exported, "Exports", done, since); | |
| 231 | 1277 } |
|
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|
1278 |
| 1244 | 1279 |
| 1247 | 1280 void ServerIndex::GetLastExportedResource(Json::Value& target) |
|
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|
1281 { |
| 1244 | 1282 std::list<ExportedResource> exported; |
| 1283 | |
| 1284 { | |
| 1285 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1286 db_.GetLastExportedResource(exported); |
| 1244 | 1287 } |
| 1288 | |
| 1289 FormatLog(target, exported, "Exports", true, 0); | |
|
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|
1290 } |
|
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1291 |
|
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1292 |
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1293 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1294 { |
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1295 if (maximumStorageSize_ != 0) |
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1296 { |
|
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1297 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
| 1247 | 1298 assert(db_.GetTotalCompressedSize() == currentSize); |
|
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1299 |
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1300 if (currentSize + instanceSize > maximumStorageSize_) |
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1301 { |
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1302 return true; |
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1303 } |
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1304 } |
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1305 |
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1306 if (maximumPatients_ != 0) |
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1307 { |
| 1247 | 1308 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1309 if (patientCount > maximumPatients_) |
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1310 { |
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1311 return true; |
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1312 } |
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1313 } |
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1314 |
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1315 return false; |
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1316 } |
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1317 |
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1318 |
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1319 void ServerIndex::Recycle(uint64_t instanceSize, |
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1320 const std::string& newPatientId) |
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1321 { |
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1322 if (!IsRecyclingNeeded(instanceSize)) |
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1323 { |
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1324 return; |
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1325 } |
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1326 |
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1327 // Check whether other DICOM instances from this patient are |
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1328 // already stored |
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1329 int64_t patientToAvoid; |
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1330 ResourceType type; |
| 1294 | 1331 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
|
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1332 |
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1333 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1334 { |
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1335 throw OrthancException(ErrorCode_InternalError); |
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1336 } |
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1337 |
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1338 // Iteratively select patient to remove until there is enough |
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1339 // space in the DICOM store |
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1340 int64_t patientToRecycle; |
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1341 while (true) |
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1342 { |
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1343 // If other instances of this patient are already in the store, |
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1344 // we must avoid to recycle them |
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1345 bool ok = hasPatientToAvoid ? |
| 1247 | 1346 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
| 1347 db_.SelectPatientToRecycle(patientToRecycle); | |
|
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1348 |
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1349 if (!ok) |
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1350 { |
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1351 throw OrthancException(ErrorCode_FullStorage); |
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1352 } |
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1353 |
|
1331
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|
1354 VLOG(1) << "Recycling one patient"; |
| 1247 | 1355 db_.DeleteResource(patientToRecycle); |
|
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1356 |
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1357 if (!IsRecyclingNeeded(instanceSize)) |
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1358 { |
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1359 // OK, we're done |
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1360 break; |
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1361 } |
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1362 } |
|
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1363 } |
|
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1364 |
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1365 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1366 { |
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1367 boost::mutex::scoped_lock lock(mutex_); |
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1368 maximumPatients_ = count; |
|
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1369 |
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1370 if (count == 0) |
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1371 { |
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1372 LOG(WARNING) << "No limit on the number of stored patients"; |
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1373 } |
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1374 else |
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1375 { |
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1376 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1377 } |
|
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1378 |
|
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1379 StandaloneRecycling(); |
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1380 } |
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1381 |
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1382 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1383 { |
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1384 boost::mutex::scoped_lock lock(mutex_); |
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1385 maximumStorageSize_ = size; |
|
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1386 |
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1387 if (size == 0) |
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1388 { |
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1389 LOG(WARNING) << "No limit on the size of the storage area"; |
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1390 } |
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1391 else |
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1392 { |
|
440
23e5b35e3c5c
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|
1393 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
|
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1394 } |
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1395 |
|
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1396 StandaloneRecycling(); |
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1397 } |
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1398 |
|
272
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1399 void ServerIndex::StandaloneRecycling() |
|
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1400 { |
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1401 // WARNING: No mutex here, do not include this as a public method |
|
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1402 Transaction t(*this); |
|
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1403 Recycle(0, ""); |
|
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1404 t.Commit(0); |
|
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1405 } |
|
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1406 |
|
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1407 |
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1408 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1409 { |
|
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|
1410 boost::mutex::scoped_lock lock(mutex_); |
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1411 |
|
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1412 // Lookup for the requested resource |
|
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|
1413 int64_t id; |
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1414 ResourceType type; |
| 1294 | 1415 if (!db_.LookupResource(id, type, publicId) || |
|
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1416 type != ResourceType_Patient) |
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1417 { |
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1418 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1419 } |
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1420 |
| 1247 | 1421 return db_.IsProtectedPatient(id); |
|
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1422 } |
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1423 |
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1424 |
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1425 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1426 bool isProtected) |
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1427 { |
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1428 boost::mutex::scoped_lock lock(mutex_); |
|
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1429 Transaction transaction(*this); |
|
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1430 |
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1431 // Lookup for the requested resource |
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1432 int64_t id; |
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1433 ResourceType type; |
| 1294 | 1434 if (!db_.LookupResource(id, type, publicId) || |
|
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1435 type != ResourceType_Patient) |
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1436 { |
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1437 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1438 } |
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1439 |
| 1247 | 1440 db_.SetProtectedPatient(id, isProtected); |
|
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1441 transaction.Commit(0); |
|
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1442 |
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1443 if (isProtected) |
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1444 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1445 else |
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1446 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1447 } |
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1448 |
| 304 | 1449 |
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1450 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1451 const std::string& publicId) |
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1452 { |
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1453 result.clear(); |
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1454 |
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1455 boost::mutex::scoped_lock lock(mutex_); |
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1456 |
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1457 ResourceType type; |
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1458 int64_t resource; |
| 1294 | 1459 if (!db_.LookupResource(resource, type, publicId)) |
|
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1460 { |
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1461 throw OrthancException(ErrorCode_UnknownResource); |
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1462 } |
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1463 |
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1464 if (type == ResourceType_Instance) |
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1465 { |
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1466 // An instance cannot have a child |
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1467 throw OrthancException(ErrorCode_BadParameterType); |
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1468 } |
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1469 |
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|
1470 std::list<int64_t> tmp; |
| 1247 | 1471 db_.GetChildrenInternalId(tmp, resource); |
|
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1472 |
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1473 for (std::list<int64_t>::const_iterator |
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1474 it = tmp.begin(); it != tmp.end(); ++it) |
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1475 { |
| 1247 | 1476 result.push_back(db_.GetPublicId(*it)); |
|
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1477 } |
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1478 } |
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1479 |
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1480 |
| 304 | 1481 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
| 1482 const std::string& publicId) | |
| 1483 { | |
| 1484 result.clear(); | |
| 1485 | |
| 1486 boost::mutex::scoped_lock lock(mutex_); | |
| 1487 | |
| 1488 ResourceType type; | |
| 1489 int64_t top; | |
| 1294 | 1490 if (!db_.LookupResource(top, type, publicId)) |
| 304 | 1491 { |
| 1492 throw OrthancException(ErrorCode_UnknownResource); | |
| 1493 } | |
| 1494 | |
| 1495 if (type == ResourceType_Instance) | |
| 1496 { | |
| 1497 // The resource is already an instance: Do not go down the hierarchy | |
| 1498 result.push_back(publicId); | |
| 1499 return; | |
| 1500 } | |
| 1501 | |
| 1502 std::stack<int64_t> toExplore; | |
| 1503 toExplore.push(top); | |
| 1504 | |
| 1505 std::list<int64_t> tmp; | |
| 1506 | |
| 1507 while (!toExplore.empty()) | |
| 1508 { | |
| 1509 // Get the internal ID of the current resource | |
| 1510 int64_t resource = toExplore.top(); | |
| 1511 toExplore.pop(); | |
| 1512 | |
| 1247 | 1513 if (db_.GetResourceType(resource) == ResourceType_Instance) |
| 304 | 1514 { |
| 1247 | 1515 result.push_back(db_.GetPublicId(resource)); |
| 304 | 1516 } |
| 1517 else | |
| 1518 { | |
| 1519 // Tag all the children of this resource as to be explored | |
| 1247 | 1520 db_.GetChildrenInternalId(tmp, resource); |
| 304 | 1521 for (std::list<int64_t>::const_iterator |
| 656 | 1522 it = tmp.begin(); it != tmp.end(); ++it) |
| 304 | 1523 { |
| 1524 toExplore.push(*it); | |
| 1525 } | |
| 1526 } | |
| 1527 } | |
| 1528 } | |
| 1529 | |
|
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1530 |
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1531 void ServerIndex::SetMetadata(const std::string& publicId, |
|
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1532 MetadataType type, |
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1533 const std::string& value) |
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1534 { |
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1535 boost::mutex::scoped_lock lock(mutex_); |
|
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1536 Transaction t(*this); |
|
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1537 |
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|
1538 ResourceType rtype; |
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1539 int64_t id; |
| 1294 | 1540 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1541 { |
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1542 throw OrthancException(ErrorCode_UnknownResource); |
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1543 } |
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1544 |
| 1247 | 1545 db_.SetMetadata(id, type, value); |
|
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1546 |
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1547 if (IsUserMetadata(type)) |
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1548 { |
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1549 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1550 } |
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1551 |
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1552 t.Commit(0); |
|
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1553 } |
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1554 |
| 438 | 1555 |
| 1556 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
| 1557 MetadataType type) | |
| 1558 { | |
| 1559 boost::mutex::scoped_lock lock(mutex_); | |
|
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|
1560 Transaction t(*this); |
| 438 | 1561 |
| 1562 ResourceType rtype; | |
| 1563 int64_t id; | |
| 1294 | 1564 if (!db_.LookupResource(id, rtype, publicId)) |
| 438 | 1565 { |
| 1566 throw OrthancException(ErrorCode_UnknownResource); | |
| 1567 } | |
| 1568 | |
| 1247 | 1569 db_.DeleteMetadata(id, type); |
|
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1570 |
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1571 if (IsUserMetadata(type)) |
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1572 { |
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1573 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1574 } |
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1575 |
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|
1576 t.Commit(0); |
| 438 | 1577 } |
| 1578 | |
| 1579 | |
|
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1580 bool ServerIndex::LookupMetadata(std::string& target, |
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1581 const std::string& publicId, |
|
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1582 MetadataType type) |
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1583 { |
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1584 boost::mutex::scoped_lock lock(mutex_); |
|
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1585 |
|
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|
1586 ResourceType rtype; |
|
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1587 int64_t id; |
| 1294 | 1588 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1589 { |
|
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|
1590 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1591 } |
|
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|
1592 |
| 1247 | 1593 return db_.LookupMetadata(target, id, type); |
|
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1594 } |
|
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|
1595 |
|
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|
1596 |
| 739 | 1597 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
|
436
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|
1598 const std::string& publicId) |
|
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|
1599 { |
|
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|
1600 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1601 |
|
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|
1602 ResourceType rtype; |
|
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|
1603 int64_t id; |
| 1294 | 1604 if (!db_.LookupResource(id, rtype, publicId)) |
|
436
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|
1605 { |
|
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|
1606 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1607 } |
|
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|
1608 |
| 1247 | 1609 db_.ListAvailableMetadata(target, id); |
|
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|
1610 } |
|
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|
1611 |
|
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|
1612 |
|
697
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|
1613 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
|
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|
1614 const std::string& publicId, |
|
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|
1615 ResourceType expectedType) |
|
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|
1616 { |
|
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|
1617 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1618 |
|
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|
1619 ResourceType type; |
|
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|
1620 int64_t id; |
| 1294 | 1621 if (!db_.LookupResource(id, type, publicId) || |
|
697
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|
1622 expectedType != type) |
|
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|
1623 { |
|
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|
1624 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1625 } |
|
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|
1626 |
| 1247 | 1627 db_.ListAvailableAttachments(target, id); |
|
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|
1628 } |
|
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|
1629 |
|
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|
1630 |
|
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|
1631 bool ServerIndex::LookupParent(std::string& target, |
|
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|
1632 const std::string& publicId) |
|
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|
1633 { |
|
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|
1634 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1635 |
|
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|
1636 ResourceType type; |
|
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|
1637 int64_t id; |
| 1294 | 1638 if (!db_.LookupResource(id, type, publicId)) |
|
306
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|
1639 { |
|
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|
1640 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1641 } |
|
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|
1642 |
|
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|
1643 int64_t parentId; |
| 1247 | 1644 if (db_.LookupParent(parentId, id)) |
|
306
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|
1645 { |
| 1247 | 1646 target = db_.GetPublicId(parentId); |
|
306
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|
1647 return true; |
|
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|
1648 } |
|
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|
1649 else |
|
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|
1650 { |
|
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|
1651 return false; |
|
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|
1652 } |
|
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|
1653 } |
| 310 | 1654 |
| 1655 | |
| 1656 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
| 1657 { | |
| 1658 boost::mutex::scoped_lock lock(mutex_); | |
|
1310
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diff
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|
1659 Transaction transaction(*this); |
| 311 | 1660 |
| 1237 | 1661 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
|
1310
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diff
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|
1662 transaction.Commit(0); |
| 311 | 1663 |
| 1664 return seq; | |
| 310 | 1665 } |
| 315 | 1666 |
| 1667 | |
| 1668 | |
| 1669 void ServerIndex::LogChange(ChangeType changeType, | |
| 1670 const std::string& publicId) | |
| 1671 { | |
| 1672 boost::mutex::scoped_lock lock(mutex_); | |
|
1310
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diff
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|
1673 Transaction transaction(*this); |
| 315 | 1674 |
| 1675 int64_t id; | |
| 1676 ResourceType type; | |
| 1294 | 1677 if (!db_.LookupResource(id, type, publicId)) |
| 315 | 1678 { |
| 1679 throw OrthancException(ErrorCode_UnknownResource); | |
| 1680 } | |
| 1681 | |
| 1237 | 1682 LogChange(id, changeType, type, publicId); |
|
1310
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diff
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|
1683 transaction.Commit(0); |
| 315 | 1684 } |
|
413
47d63c941902
clearing /exports and /changes
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diff
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|
1685 |
|
47d63c941902
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diff
changeset
|
1686 |
|
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diff
changeset
|
1687 void ServerIndex::DeleteChanges() |
|
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diff
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|
1688 { |
|
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diff
changeset
|
1689 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1690 db_.ClearChanges(); |
|
413
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diff
changeset
|
1691 } |
|
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diff
changeset
|
1692 |
|
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diff
changeset
|
1693 void ServerIndex::DeleteExportedResources() |
|
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diff
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|
1694 { |
|
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diff
changeset
|
1695 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1696 db_.ClearExportedResources(); |
|
413
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diff
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|
1697 } |
|
440
23e5b35e3c5c
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diff
changeset
|
1698 |
|
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diff
changeset
|
1699 |
| 646 | 1700 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
| 1701 /* out */ uint64_t& uncompressedSize, | |
| 1702 /* out */ unsigned int& countStudies, | |
| 1703 /* out */ unsigned int& countSeries, | |
| 1704 /* out */ unsigned int& countInstances, | |
| 1705 /* in */ int64_t id, | |
| 1706 /* in */ ResourceType type) | |
|
440
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diff
changeset
|
1707 { |
| 646 | 1708 std::stack<int64_t> toExplore; |
| 1709 toExplore.push(id); | |
|
440
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diff
changeset
|
1710 |
| 646 | 1711 countInstances = 0; |
| 1712 countSeries = 0; | |
| 1713 countStudies = 0; | |
| 1714 compressedSize = 0; | |
| 1715 uncompressedSize = 0; | |
|
440
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diff
changeset
|
1716 |
|
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diff
changeset
|
1717 while (!toExplore.empty()) |
|
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diff
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|
1718 { |
|
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|
1719 // Get the internal ID of the current resource |
|
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|
1720 int64_t resource = toExplore.top(); |
|
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|
1721 toExplore.pop(); |
|
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|
1722 |
| 1247 | 1723 ResourceType thisType = db_.GetResourceType(resource); |
|
440
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|
1724 |
|
702
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|
1725 std::list<FileContentType> f; |
| 1247 | 1726 db_.ListAvailableAttachments(f, resource); |
|
702
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|
1727 |
|
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|
1728 for (std::list<FileContentType>::const_iterator |
|
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|
1729 it = f.begin(); it != f.end(); ++it) |
|
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|
1730 { |
|
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changeset
|
1731 FileInfo attachment; |
| 1247 | 1732 if (db_.LookupAttachment(attachment, resource, *it)) |
|
702
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|
1733 { |
|
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|
1734 compressedSize += attachment.GetCompressedSize(); |
|
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|
1735 uncompressedSize += attachment.GetUncompressedSize(); |
|
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|
1736 } |
|
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|
1737 } |
|
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|
1738 |
|
440
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|
1739 if (thisType == ResourceType_Instance) |
|
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|
1740 { |
|
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|
1741 countInstances++; |
|
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|
1742 } |
|
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|
1743 else |
|
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|
1744 { |
|
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|
1745 switch (thisType) |
|
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|
1746 { |
|
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|
1747 case ResourceType_Study: |
|
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|
1748 countStudies++; |
|
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changeset
|
1749 break; |
|
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1750 |
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1751 case ResourceType_Series: |
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1752 countSeries++; |
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1753 break; |
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1754 |
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1755 default: |
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1756 break; |
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1757 } |
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1758 |
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1759 // Tag all the children of this resource as to be explored |
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1760 std::list<int64_t> tmp; |
| 1247 | 1761 db_.GetChildrenInternalId(tmp, resource); |
|
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1762 for (std::list<int64_t>::const_iterator |
| 656 | 1763 it = tmp.begin(); it != tmp.end(); ++it) |
|
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1764 { |
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1765 toExplore.push(*it); |
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1766 } |
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1767 } |
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1768 } |
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1769 |
| 646 | 1770 if (countStudies == 0) |
| 1771 { | |
| 1772 countStudies = 1; | |
| 1773 } | |
| 1774 | |
| 1775 if (countSeries == 0) | |
| 1776 { | |
| 1777 countSeries = 1; | |
| 1778 } | |
| 1779 } | |
| 1780 | |
| 1781 | |
| 1782 | |
| 1783 void ServerIndex::GetStatistics(Json::Value& target, | |
| 1784 const std::string& publicId) | |
| 1785 { | |
| 1786 boost::mutex::scoped_lock lock(mutex_); | |
| 1787 | |
| 1788 ResourceType type; | |
| 1789 int64_t top; | |
| 1294 | 1790 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1791 { |
| 1792 throw OrthancException(ErrorCode_UnknownResource); | |
| 1793 } | |
| 1794 | |
| 1795 uint64_t uncompressedSize; | |
| 1796 uint64_t compressedSize; | |
| 1797 unsigned int countStudies; | |
| 1798 unsigned int countSeries; | |
| 1799 unsigned int countInstances; | |
| 1800 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1801 countSeries, countInstances, top, type); | |
| 1802 | |
|
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1803 target = Json::objectValue; |
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1804 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
|
1310
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1805 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
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1806 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
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1807 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1808 |
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1809 switch (type) |
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1810 { |
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1811 // Do NOT add "break" below this point! |
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1812 case ResourceType_Patient: |
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1813 target["CountStudies"] = countStudies; |
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1814 |
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1815 case ResourceType_Study: |
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1816 target["CountSeries"] = countSeries; |
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1817 |
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1818 case ResourceType_Series: |
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1819 target["CountInstances"] = countInstances; |
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1820 |
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1821 case ResourceType_Instance: |
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1822 default: |
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1823 break; |
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1824 } |
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1825 } |
|
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1826 |
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1827 |
| 646 | 1828 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
| 1829 /* out */ uint64_t& uncompressedSize, | |
| 1830 /* out */ unsigned int& countStudies, | |
| 1831 /* out */ unsigned int& countSeries, | |
| 1832 /* out */ unsigned int& countInstances, | |
| 1833 const std::string& publicId) | |
| 1834 { | |
| 1835 boost::mutex::scoped_lock lock(mutex_); | |
| 1836 | |
| 1837 ResourceType type; | |
| 1838 int64_t top; | |
| 1294 | 1839 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1840 { |
| 1841 throw OrthancException(ErrorCode_UnknownResource); | |
| 1842 } | |
| 1843 | |
| 1844 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1845 countSeries, countInstances, top, type); | |
| 1846 } | |
| 1847 | |
| 1848 | |
|
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1849 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1850 { |
|
2069
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1851 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
|
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1852 if (stableAge <= 0) |
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1853 { |
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1854 stableAge = 60; |
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1855 } |
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1856 |
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1857 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1858 |
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1859 while (!that->done_) |
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1860 { |
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1861 // Check for stable resources each second |
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1862 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1863 |
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1864 boost::mutex::scoped_lock lock(that->mutex_); |
| 513 | 1865 |
|
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1866 while (!that->unstableResources_.IsEmpty() && |
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1867 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1868 { |
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1869 // This DICOM resource has not received any new instance for |
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1870 // some time. It can be considered as stable. |
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1871 |
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1872 UnstableResourcePayload payload; |
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1873 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1874 |
| 513 | 1875 // Ensure that the resource is still existing before logging the change |
| 1247 | 1876 if (that->db_.IsExistingResource(id)) |
|
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1877 { |
|
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1878 switch (payload.GetResourceType()) |
| 513 | 1879 { |
|
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1880 case ResourceType_Patient: |
| 1237 | 1881 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
| 513 | 1882 break; |
|
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1883 |
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1884 case ResourceType_Study: |
| 1237 | 1885 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
| 513 | 1886 break; |
|
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1887 |
|
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1888 case ResourceType_Series: |
| 1237 | 1889 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
| 513 | 1890 break; |
| 1891 | |
| 1892 default: | |
| 1893 throw OrthancException(ErrorCode_InternalError); | |
| 1894 } | |
| 1895 | |
| 1896 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
|
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1897 } |
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1898 } |
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1899 } |
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1900 |
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1901 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1902 } |
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1903 |
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1904 |
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1905 void ServerIndex::MarkAsUnstable(int64_t id, |
|
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1906 Orthanc::ResourceType type, |
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1907 const std::string& publicId) |
|
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1908 { |
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1909 // WARNING: Before calling this method, "mutex_" must be locked. |
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1910 |
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1911 assert(type == Orthanc::ResourceType_Patient || |
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1912 type == Orthanc::ResourceType_Study || |
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1913 type == Orthanc::ResourceType_Series); |
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1914 |
|
1177
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1915 UnstableResourcePayload payload(type, publicId); |
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1916 unstableResources_.AddOrMakeMostRecent(id, payload); |
|
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1917 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
|
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1918 |
| 1237 | 1919 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1920 } |
| 521 | 1921 |
| 1922 | |
| 1923 | |
|
1728
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1924 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1925 ResourceType level, |
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1926 const DicomTag& tag, |
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|
1927 const std::string& value) |
| 615 | 1928 { |
| 1727 | 1929 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
| 1930 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
| 1931 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
| 1932 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
| 1933 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
| 1725 | 1934 |
| 615 | 1935 result.clear(); |
| 1936 | |
| 1937 boost::mutex::scoped_lock lock(mutex_); | |
| 1938 | |
| 1746 | 1939 LookupIdentifierQuery query(level); |
| 1940 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
| 1941 query.Apply(result, db_); | |
| 615 | 1942 } |
| 1943 | |
| 1944 | |
|
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1945 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1946 const std::string& publicId) |
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1947 { |
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1948 boost::mutex::scoped_lock lock(mutex_); |
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1949 |
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1950 Transaction t(*this); |
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1951 |
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1952 ResourceType resourceType; |
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1953 int64_t resourceId; |
| 1294 | 1954 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
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1955 { |
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1956 return StoreStatus_Failure; // Inexistent resource |
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1957 } |
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1958 |
|
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1959 // Remove possible previous attachment |
| 1247 | 1960 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
|
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1961 |
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1962 // Locate the patient of the target resource |
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1963 int64_t patientId = resourceId; |
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1964 for (;;) |
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1965 { |
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1966 int64_t parent; |
| 1247 | 1967 if (db_.LookupParent(parent, patientId)) |
|
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1968 { |
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1969 // We have not reached the patient level yet |
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1970 patientId = parent; |
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1971 } |
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1972 else |
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|
1973 { |
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1974 // We have reached the patient level |
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1975 break; |
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|
1976 } |
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|
1977 } |
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|
1978 |
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|
1979 // Possibly apply the recycling mechanism while preserving this patient |
| 1247 | 1980 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
| 1981 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
|
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1982 |
| 1247 | 1983 db_.AddAttachment(resourceId, attachment); |
|
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|
1984 |
|
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1985 if (IsUserContentType(attachment.GetContentType())) |
|
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1986 { |
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|
1987 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
|
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|
1988 } |
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|
1989 |
|
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|
1990 t.Commit(attachment.GetCompressedSize()); |
|
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|
1991 |
|
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|
1992 return StoreStatus_Success; |
|
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|
1993 } |
|
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|
1994 |
|
702
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|
1995 |
|
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|
1996 void ServerIndex::DeleteAttachment(const std::string& publicId, |
|
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|
1997 FileContentType type) |
|
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|
1998 { |
|
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|
1999 boost::mutex::scoped_lock lock(mutex_); |
|
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|
2000 Transaction t(*this); |
|
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|
2001 |
|
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|
2002 ResourceType rtype; |
|
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|
2003 int64_t id; |
| 1294 | 2004 if (!db_.LookupResource(id, rtype, publicId)) |
|
702
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|
2005 { |
|
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changeset
|
2006 throw OrthancException(ErrorCode_UnknownResource); |
|
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changeset
|
2007 } |
|
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diff
changeset
|
2008 |
| 1247 | 2009 db_.DeleteAttachment(id, type); |
|
702
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diff
changeset
|
2010 |
|
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2011 if (IsUserContentType(type)) |
|
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2012 { |
|
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2013 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
|
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
2014 } |
|
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2015 |
|
702
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diff
changeset
|
2016 t.Commit(0); |
|
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diff
changeset
|
2017 } |
|
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|
2018 |
|
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changeset
|
2019 |
|
1002
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anonymization refactoring
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diff
changeset
|
2020 bool ServerIndex::GetMetadata(Json::Value& target, |
|
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|
2021 const std::string& publicId) |
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|
2022 { |
|
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|
2023 boost::mutex::scoped_lock lock(mutex_); |
|
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changeset
|
2024 |
|
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changeset
|
2025 target = Json::objectValue; |
|
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changeset
|
2026 |
|
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changeset
|
2027 ResourceType type; |
|
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changeset
|
2028 int64_t id; |
| 1294 | 2029 if (!db_.LookupResource(id, type, publicId)) |
|
1002
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|
2030 { |
|
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|
2031 return false; |
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|
2032 } |
|
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|
2033 |
|
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changeset
|
2034 std::list<MetadataType> metadata; |
| 1247 | 2035 db_.ListAvailableMetadata(metadata, id); |
|
1002
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|
2036 |
|
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changeset
|
2037 for (std::list<MetadataType>::const_iterator |
| 1304 | 2038 it = metadata.begin(); it != metadata.end(); ++it) |
|
1002
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|
2039 { |
|
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changeset
|
2040 std::string key = EnumerationToString(*it); |
| 1238 | 2041 |
| 2042 std::string value; | |
| 1247 | 2043 if (!db_.LookupMetadata(value, id, *it)) |
| 1238 | 2044 { |
| 2045 value.clear(); | |
| 2046 } | |
| 2047 | |
|
1002
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|
2048 target[key] = value; |
|
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|
2049 } |
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|
2050 |
|
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changeset
|
2051 return true; |
|
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diff
changeset
|
2052 } |
|
1218
efece308018e
report database version in /system
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1198
diff
changeset
|
2053 |
|
efece308018e
report database version in /system
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1198
diff
changeset
|
2054 |
|
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
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1247
diff
changeset
|
2055 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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diff
changeset
|
2056 const std::string& value) |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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1247
diff
changeset
|
2057 { |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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1247
diff
changeset
|
2058 boost::mutex::scoped_lock lock(mutex_); |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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1247
diff
changeset
|
2059 db_.SetGlobalProperty(property, value); |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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1247
diff
changeset
|
2060 } |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
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diff
changeset
|
2061 |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2062 |
|
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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1198
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|
2063 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
|
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2064 const std::string& defaultValue) |
|
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2065 { |
|
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2066 boost::mutex::scoped_lock lock(mutex_); |
| 1239 | 2067 |
| 2068 std::string value; | |
| 1247 | 2069 if (db_.LookupGlobalProperty(value, property)) |
| 1239 | 2070 { |
| 2071 return value; | |
| 2072 } | |
| 2073 else | |
| 2074 { | |
| 2075 return defaultValue; | |
| 2076 } | |
|
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2077 } |
|
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2078 |
| 1352 | 2079 |
| 2080 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
| 2081 const std::string& publicId, | |
|
1677
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
1676
diff
changeset
|
2082 ResourceType expectedType, |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2083 ResourceType levelOfInterest) |
| 1352 | 2084 { |
|
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2085 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2086 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
|
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parents:
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diff
changeset
|
2087 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
|
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
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|
2088 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
|
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2089 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
|
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parents:
1676
diff
changeset
|
2090 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
|
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diff
changeset
|
2091 { |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2092 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2093 } |
|
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2094 |
| 1352 | 2095 result.Clear(); |
| 2096 | |
| 2097 boost::mutex::scoped_lock lock(mutex_); | |
| 2098 | |
| 2099 // Lookup for the requested resource | |
| 2100 int64_t id; | |
| 2101 ResourceType type; | |
| 2102 if (!db_.LookupResource(id, type, publicId) || | |
| 2103 type != expectedType) | |
| 2104 { | |
| 2105 return false; | |
| 2106 } | |
|
1677
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2107 |
|
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2108 if (type == ResourceType_Study) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2109 { |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2110 DicomMap tmp; |
|
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parents:
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diff
changeset
|
2111 db_.GetMainDicomTags(tmp, id); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2112 |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2113 switch (levelOfInterest) |
|
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2114 { |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2115 case ResourceType_Patient: |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2116 tmp.ExtractPatientInformation(result); |
|
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|
2117 return true; |
|
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parents:
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changeset
|
2118 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2119 case ResourceType_Study: |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2120 tmp.ExtractStudyInformation(result); |
|
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parents:
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|
2121 return true; |
|
a903d57d9f0c
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parents:
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changeset
|
2122 |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2123 default: |
|
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
1676
diff
changeset
|
2124 throw OrthancException(ErrorCode_InternalError); |
|
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2125 } |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2126 } |
| 1352 | 2127 else |
| 2128 { | |
| 2129 db_.GetMainDicomTags(result, id); | |
| 2130 return true; | |
| 2131 } | |
| 2132 } | |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2133 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2134 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2135 bool ServerIndex::LookupResourceType(ResourceType& type, |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2136 const std::string& publicId) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2137 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2138 boost::mutex::scoped_lock lock(mutex_); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2139 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2140 int64_t id; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2141 return db_.LookupResource(id, type, publicId); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2142 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2143 |
|
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2144 |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2145 unsigned int ServerIndex::GetDatabaseVersion() |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2146 { |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2147 boost::mutex::scoped_lock lock(mutex_); |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2148 return db_.GetDatabaseVersion(); |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2149 } |
|
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2150 |
|
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2151 |
| 1753 | 2152 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
| 2153 std::vector<std::string>& instances, | |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
changeset
|
2154 const ::Orthanc::LookupResource& lookup) |
|
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2155 { |
| 1753 | 2156 boost::mutex::scoped_lock lock(mutex_); |
| 2157 | |
| 2158 std::list<int64_t> tmp; | |
| 2159 lookup.FindCandidates(tmp, db_); | |
| 2160 | |
| 2161 resources.resize(tmp.size()); | |
| 2162 instances.resize(tmp.size()); | |
| 2163 | |
| 2164 size_t pos = 0; | |
| 2165 for (std::list<int64_t>::const_iterator | |
| 2166 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
| 2167 { | |
| 1754 | 2168 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
| 2169 | |
| 1753 | 2170 int64_t instance; |
| 2171 if (!Toolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) | |
| 2172 { | |
| 2173 throw OrthancException(ErrorCode_InternalError); | |
| 2174 } | |
| 2175 | |
| 2176 resources[pos] = db_.GetPublicId(*it); | |
| 2177 instances[pos] = db_.GetPublicId(instance); | |
| 2178 } | |
|
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2179 } |
|
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2180 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2181 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2182 bool ServerIndex::LookupParent(std::string& target, |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2183 const std::string& publicId, |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2184 ResourceType parentType) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2185 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2186 boost::mutex::scoped_lock lock(mutex_); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2187 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2188 ResourceType type; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2189 int64_t id; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2190 if (!db_.LookupResource(id, type, publicId)) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2191 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2192 throw OrthancException(ErrorCode_UnknownResource); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2193 } |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2194 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2195 while (type != parentType) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2196 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2197 int64_t parentId; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2198 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2199 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2200 !db_.LookupParent(parentId, id)) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2201 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2202 return false; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2203 } |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2204 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2205 id = parentId; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2206 type = GetParentResourceType(type); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2207 } |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2208 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2209 target = db_.GetPublicId(id); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2210 return true; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2211 } |
| 0 | 2212 } |