Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3086:74e3e48aa9bd db-changes
grouping the setting of metadata
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 04 Jan 2019 17:10:58 +0100 |
parents | 683d572424b6 |
children | df1b17be20f6 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 static void CopyListToVector(std::vector<std::string>& target, |
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62 const std::list<std::string>& source) |
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63 { |
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64 target.resize(source.size()); |
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65 |
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66 size_t pos = 0; |
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67 |
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68 for (std::list<std::string>::const_iterator |
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69 it = source.begin(); it != source.end(); ++it) |
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70 { |
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71 target[pos] = *it; |
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72 pos ++; |
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73 } |
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74 } |
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75 |
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76 |
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77 class ServerIndex::Listener : public IDatabaseListener |
0 | 78 { |
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79 private: |
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80 struct FileToRemove |
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81 { |
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82 private: |
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83 std::string uuid_; |
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84 FileContentType type_; |
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85 |
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86 public: |
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87 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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88 type_(info.GetContentType()) |
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89 { |
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90 } |
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91 |
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92 const std::string& GetUuid() const |
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93 { |
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94 return uuid_; |
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95 } |
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96 |
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97 FileContentType GetContentType() const |
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98 { |
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99 return type_; |
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100 } |
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101 }; |
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102 |
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103 ServerContext& context_; |
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104 bool hasRemainingLevel_; |
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105 ResourceType remainingType_; |
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106 std::string remainingPublicId_; |
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107 std::list<FileToRemove> pendingFilesToRemove_; |
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108 std::list<ServerIndexChange> pendingChanges_; |
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109 uint64_t sizeOfFilesToRemove_; |
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110 bool insideTransaction_; |
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111 |
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112 void Reset() |
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113 { |
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114 sizeOfFilesToRemove_ = 0; |
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115 hasRemainingLevel_ = false; |
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116 pendingFilesToRemove_.clear(); |
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117 pendingChanges_.clear(); |
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118 } |
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119 |
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120 public: |
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121 Listener(ServerContext& context) : context_(context), |
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122 insideTransaction_(false) |
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123 { |
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124 Reset(); |
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125 assert(ResourceType_Patient < ResourceType_Study && |
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126 ResourceType_Study < ResourceType_Series && |
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127 ResourceType_Series < ResourceType_Instance); |
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128 } |
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129 |
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130 void StartTransaction() |
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131 { |
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132 Reset(); |
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133 insideTransaction_ = true; |
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134 } |
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135 |
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136 void EndTransaction() |
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137 { |
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138 insideTransaction_ = false; |
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139 } |
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140 |
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141 uint64_t GetSizeOfFilesToRemove() |
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142 { |
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143 return sizeOfFilesToRemove_; |
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144 } |
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145 |
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146 void CommitFilesToRemove() |
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147 { |
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148 for (std::list<FileToRemove>::const_iterator |
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149 it = pendingFilesToRemove_.begin(); |
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150 it != pendingFilesToRemove_.end(); ++it) |
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151 { |
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152 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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153 } |
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154 } |
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155 |
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156 void CommitChanges() |
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157 { |
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158 for (std::list<ServerIndexChange>::const_iterator |
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159 it = pendingChanges_.begin(); |
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160 it != pendingChanges_.end(); ++it) |
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161 { |
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162 context_.SignalChange(*it); |
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163 } |
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164 } |
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165 |
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166 virtual void SignalRemainingAncestor(ResourceType parentType, |
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167 const std::string& publicId) |
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168 { |
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169 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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170 |
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171 if (hasRemainingLevel_) |
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172 { |
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173 if (parentType < remainingType_) |
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174 { |
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175 remainingType_ = parentType; |
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176 remainingPublicId_ = publicId; |
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177 } |
1158 | 178 } |
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179 else |
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180 { |
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181 hasRemainingLevel_ = true; |
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182 remainingType_ = parentType; |
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183 remainingPublicId_ = publicId; |
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184 } |
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185 } |
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186 |
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187 virtual void SignalFileDeleted(const FileInfo& info) |
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188 { |
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189 assert(Toolbox::IsUuid(info.GetUuid())); |
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190 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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191 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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192 } |
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193 |
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194 virtual void SignalChange(const ServerIndexChange& change) |
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195 { |
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196 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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197 << EnumerationToString(change.GetResourceType()) << ": " |
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198 << EnumerationToString(change.GetChangeType()); |
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199 |
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200 if (insideTransaction_) |
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201 { |
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202 pendingChanges_.push_back(change); |
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203 } |
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204 else |
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205 { |
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206 context_.SignalChange(change); |
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207 } |
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208 } |
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209 |
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210 bool HasRemainingLevel() const |
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211 { |
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212 return hasRemainingLevel_; |
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213 } |
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214 |
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215 ResourceType GetRemainingType() const |
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216 { |
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217 assert(HasRemainingLevel()); |
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218 return remainingType_; |
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219 } |
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220 |
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221 const std::string& GetRemainingPublicId() const |
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222 { |
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223 assert(HasRemainingLevel()); |
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224 return remainingPublicId_; |
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225 } |
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226 }; |
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228 | |
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229 class ServerIndex::Transaction |
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230 { |
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231 private: |
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232 ServerIndex& index_; |
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233 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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234 bool isCommitted_; |
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235 |
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236 public: |
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237 Transaction(ServerIndex& index) : |
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238 index_(index), |
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239 isCommitted_(false) |
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240 { |
1247 | 241 transaction_.reset(index_.db_.StartTransaction()); |
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242 transaction_->Begin(); |
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243 |
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244 index_.listener_->StartTransaction(); |
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245 } |
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246 |
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247 ~Transaction() |
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248 { |
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249 index_.listener_->EndTransaction(); |
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250 |
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251 if (!isCommitted_) |
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252 { |
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253 transaction_->Rollback(); |
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254 } |
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255 } |
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256 |
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257 void Commit(uint64_t sizeOfAddedFiles) |
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258 { |
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259 if (!isCommitted_) |
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260 { |
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261 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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262 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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263 |
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264 transaction_->Commit(delta); |
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265 |
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266 // We can remove the files once the SQLite transaction has |
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267 // been successfully committed. Some files might have to be |
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268 // deleted because of recycling. |
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269 index_.listener_->CommitFilesToRemove(); |
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270 |
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271 // Send all the pending changes to the Orthanc plugins |
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272 index_.listener_->CommitChanges(); |
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273 |
278
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274 isCommitted_ = true; |
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275 } |
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276 } |
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277 }; |
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278 |
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279 |
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280 class ServerIndex::UnstableResourcePayload |
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281 { |
1177
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282 private: |
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283 ResourceType type_; |
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284 std::string publicId_; |
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285 boost::posix_time::ptime time_; |
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286 |
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287 public: |
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288 UnstableResourcePayload() : type_(ResourceType_Instance) |
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289 { |
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290 } |
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291 |
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292 UnstableResourcePayload(Orthanc::ResourceType type, |
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293 const std::string& publicId) : |
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294 type_(type), |
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295 publicId_(publicId) |
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296 { |
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297 time_ = boost::posix_time::second_clock::local_time(); |
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298 } |
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299 |
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300 unsigned int GetAge() const |
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301 { |
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302 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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303 } |
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304 |
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305 ResourceType GetResourceType() const |
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306 { |
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307 return type_; |
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308 } |
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309 |
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310 const std::string& GetPublicId() const |
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311 { |
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312 return publicId_; |
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313 } |
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314 }; |
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315 |
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316 |
3027 | 317 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
318 { | |
319 private: | |
320 class TagInfo | |
321 { | |
322 private: | |
323 ResourceType level_; | |
324 DicomTagType type_; | |
325 | |
326 public: | |
327 TagInfo() | |
328 { | |
329 } | |
330 | |
331 TagInfo(ResourceType level, | |
332 DicomTagType type) : | |
333 level_(level), | |
334 type_(type) | |
335 { | |
336 } | |
337 | |
338 ResourceType GetLevel() const | |
339 { | |
340 return level_; | |
341 } | |
342 | |
343 DicomTagType GetType() const | |
344 { | |
345 return type_; | |
346 } | |
347 }; | |
348 | |
349 typedef std::map<DicomTag, TagInfo> Registry; | |
350 | |
351 | |
352 Registry registry_; | |
353 | |
354 void LoadTags(ResourceType level) | |
355 { | |
356 const DicomTag* tags = NULL; | |
357 size_t size; | |
358 | |
359 ServerToolbox::LoadIdentifiers(tags, size, level); | |
360 | |
361 for (size_t i = 0; i < size; i++) | |
362 { | |
363 if (registry_.find(tags[i]) == registry_.end()) | |
364 { | |
365 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
366 } | |
367 else | |
368 { | |
369 // These patient-level tags are copied in the study level | |
370 assert(level == ResourceType_Study && | |
371 (tags[i] == DICOM_TAG_PATIENT_ID || | |
372 tags[i] == DICOM_TAG_PATIENT_NAME || | |
373 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
374 } | |
375 } | |
376 | |
377 DicomMap::LoadMainDicomTags(tags, size, level); | |
378 | |
379 for (size_t i = 0; i < size; i++) | |
380 { | |
381 if (registry_.find(tags[i]) == registry_.end()) | |
382 { | |
383 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
384 } | |
385 } | |
386 } | |
387 | |
388 public: | |
389 MainDicomTagsRegistry() | |
390 { | |
391 LoadTags(ResourceType_Patient); | |
392 LoadTags(ResourceType_Study); | |
393 LoadTags(ResourceType_Series); | |
394 LoadTags(ResourceType_Instance); | |
395 } | |
396 | |
397 void LookupTag(ResourceType& level, | |
398 DicomTagType& type, | |
399 const DicomTag& tag) const | |
400 { | |
401 Registry::const_iterator it = registry_.find(tag); | |
402 | |
403 if (it == registry_.end()) | |
404 { | |
405 // Default values | |
406 level = ResourceType_Instance; | |
407 type = DicomTagType_Generic; | |
408 } | |
409 else | |
410 { | |
411 level = it->second.GetLevel(); | |
412 type = it->second.GetType(); | |
413 } | |
414 } | |
415 }; | |
416 | |
417 | |
212 | 418 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 419 const std::string& uuid, |
202 | 420 ResourceType expectedType) |
0 | 421 { |
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422 boost::mutex::scoped_lock lock(mutex_); |
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423 |
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424 Transaction t(*this); |
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425 |
202 | 426 int64_t id; |
427 ResourceType type; | |
1294 | 428 if (!db_.LookupResource(id, type, uuid) || |
202 | 429 expectedType != type) |
0 | 430 { |
431 return false; | |
432 } | |
202 | 433 |
1247 | 434 db_.DeleteResource(id); |
0 | 435 |
202 | 436 if (listener_->HasRemainingLevel()) |
0 | 437 { |
202 | 438 ResourceType type = listener_->GetRemainingType(); |
439 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 440 |
441 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 442 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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443 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 444 target["RemainingAncestor"]["ID"] = uuid; |
445 } | |
446 else | |
447 { | |
448 target["RemainingAncestor"] = Json::nullValue; | |
449 } | |
450 | |
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451 t.Commit(0); |
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452 |
0 | 453 return true; |
454 } | |
455 | |
456 | |
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457 void ServerIndex::FlushThread(ServerIndex* that, |
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458 unsigned int threadSleep) |
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459 { |
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460 // By default, wait for 10 seconds before flushing |
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461 unsigned int sleep = 10; |
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462 |
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463 try |
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464 { |
744 | 465 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 466 std::string sleepString; |
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467 |
1247 | 468 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 469 Toolbox::IsInteger(sleepString)) |
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470 { |
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471 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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472 } |
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473 } |
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474 catch (boost::bad_lexical_cast&) |
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475 { |
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476 } |
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477 |
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478 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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479 |
511
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480 unsigned int count = 0; |
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481 |
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482 while (!that->done_) |
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483 { |
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484 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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485 count++; |
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486 if (count < sleep) |
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487 { |
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488 continue; |
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489 } |
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490 |
2217 | 491 Logging::Flush(); |
492 | |
511
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493 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 494 that->db_.FlushToDisk(); |
511
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495 count = 0; |
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496 } |
511
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497 |
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498 LOG(INFO) << "Stopping the database flushing thread"; |
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499 } |
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500 |
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501 |
1247 | 502 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 503 int64_t series, |
504 const DicomMap& dicomSummary) | |
505 { | |
506 try | |
507 { | |
656 | 508 const DicomValue* value; |
509 const DicomValue* value2; | |
510 | |
433 | 511 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
512 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
513 { | |
514 // Patch for series with temporal positions thanks to Will Ryder | |
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515 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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516 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 517 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
518 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
519 } | |
520 | |
521 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
522 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
523 { | |
524 // Support of Cardio-PET images | |
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525 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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526 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 527 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
528 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
529 } | |
530 | |
531 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
532 { | |
1737
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533 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 534 } |
535 } | |
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536 catch (OrthancException&) |
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537 { |
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538 } |
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539 catch (boost::bad_lexical_cast&) |
433 | 540 { |
541 } | |
542 } | |
543 | |
544 | |
1237 | 545 |
546 | |
1238 | 547 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 548 int64_t id, |
549 MetadataType type) | |
550 { | |
1238 | 551 std::string s; |
1247 | 552 if (!db_.LookupMetadata(s, id, type)) |
1237 | 553 { |
554 return false; | |
555 } | |
556 | |
557 try | |
558 { | |
1238 | 559 result = boost::lexical_cast<int64_t>(s); |
1237 | 560 return true; |
561 } | |
562 catch (boost::bad_lexical_cast&) | |
563 { | |
564 return false; | |
565 } | |
566 } | |
567 | |
568 | |
1297 | 569 void ServerIndex::LogChange(int64_t internalId, |
570 ChangeType changeType, | |
571 ResourceType resourceType, | |
572 const std::string& publicId) | |
573 { | |
574 ServerIndexChange change(changeType, resourceType, publicId); | |
1300
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575 |
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576 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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577 { |
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578 db_.LogChange(internalId, change); |
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579 } |
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580 |
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581 assert(listener_.get() != NULL); |
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582 listener_->SignalChange(change); |
1297 | 583 } |
584 | |
1237 | 585 |
586 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
587 { | |
588 std::string oldValue; | |
589 | |
1247 | 590 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 591 { |
592 uint64_t oldNumber; | |
593 | |
594 try | |
595 { | |
596 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 597 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 598 return oldNumber + 1; |
599 } | |
600 catch (boost::bad_lexical_cast&) | |
601 { | |
602 throw OrthancException(ErrorCode_InternalError); | |
603 } | |
604 } | |
605 else | |
606 { | |
607 // Initialize the sequence at "1" | |
1247 | 608 db_.SetGlobalProperty(property, "1"); |
1237 | 609 return 1; |
610 } | |
611 } | |
612 | |
613 | |
614 | |
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615 ServerIndex::ServerIndex(ServerContext& context, |
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616 IDatabaseWrapper& db, |
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617 unsigned int threadSleep) : |
511
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618 done_(false), |
1247 | 619 db_(db), |
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620 maximumStorageSize_(0), |
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621 maximumPatients_(0), |
3027 | 622 overwrite_(false), |
623 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
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624 { |
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625 listener_.reset(new Listener(context)); |
1247 | 626 db_.SetListener(*listener_); |
180
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627 |
269
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628 // Initial recycling if the parameters have changed since the last |
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629 // execution of Orthanc |
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630 StandaloneRecycling(); |
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631 |
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632 if (db.HasFlushToDisk()) |
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633 { |
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634 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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635 } |
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636 |
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637 unstableResourcesMonitorThread_ = boost::thread |
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638 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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639 } |
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640 |
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641 |
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642 |
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643 ServerIndex::~ServerIndex() |
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644 { |
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645 if (!done_) |
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646 { |
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647 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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648 Stop(); |
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649 } |
0 | 650 } |
651 | |
652 | |
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653 |
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654 void ServerIndex::Stop() |
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655 { |
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656 if (!done_) |
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657 { |
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658 done_ = true; |
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659 |
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660 if (db_.HasFlushToDisk() && |
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661 flushThread_.joinable()) |
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662 { |
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663 flushThread_.join(); |
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664 } |
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665 |
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666 if (unstableResourcesMonitorThread_.joinable()) |
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667 { |
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668 unstableResourcesMonitorThread_.join(); |
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669 } |
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670 } |
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671 } |
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672 |
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673 |
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674 static void SetInstanceMetadata(ResourcesContent& content, |
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675 std::map<MetadataType, std::string>& instanceMetadata, |
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676 int64_t instance, |
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677 MetadataType metadata, |
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678 const std::string& value) |
2188 | 679 { |
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680 content.AddMetadata(instance, metadata, value); |
2188 | 681 instanceMetadata[metadata] = value; |
682 } | |
683 | |
684 | |
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685 void ServerIndex::SignalNewResource(ChangeType changeType, |
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686 ResourceType level, |
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687 const std::string& publicId, |
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688 int64_t internalId) |
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689 { |
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690 ServerIndexChange change(changeType, level, publicId); |
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691 db_.LogChange(internalId, change); |
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692 |
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693 assert(listener_.get() != NULL); |
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694 listener_->SignalChange(change); |
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695 } |
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696 |
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697 |
1006
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698 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 699 DicomInstanceToStore& instanceToStore, |
700 const Attachments& attachments) | |
0 | 701 { |
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702 boost::mutex::scoped_lock lock(mutex_); |
0 | 703 |
1822 | 704 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
705 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
706 | |
1006
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707 instanceMetadata.clear(); |
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708 |
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709 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
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710 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
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711 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
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712 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
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713 |
0 | 714 try |
715 { | |
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716 Transaction t(*this); |
0 | 717 |
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718 IDatabaseWrapper::CreateInstanceResult status; |
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719 int64_t instanceId; |
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720 |
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721 // Check whether this instance is already stored |
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|
722 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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new extension for database plugin SDK: createInstance
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diff
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|
723 hashStudy, hashSeries, hashInstance)) |
0 | 724 { |
3082
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new extension for database plugin SDK: createInstance
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parents:
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diff
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|
725 // The instance already exists |
847a0ed92654
new extension for database plugin SDK: createInstance
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diff
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|
726 |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
727 if (overwrite_) |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
3080
diff
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|
728 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
729 // Overwrite the old instance |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
730 LOG(INFO) << "Overwriting instance: " << hashInstance; |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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|
731 db_.DeleteResource(instanceId); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
732 |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
733 // Re-create the instance, now that the old one is removed |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
734 if (!db_.CreateInstance(status, instanceId, hashPatient, |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
735 hashStudy, hashSeries, hashInstance)) |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
736 { |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
737 throw OrthancException(ErrorCode_InternalError); |
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new extension for database plugin SDK: createInstance
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diff
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|
738 } |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
739 } |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
740 else |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
741 { |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
742 // Do nothing if the instance already exists and overwriting is disabled |
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new extension for database plugin SDK: createInstance
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parents:
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diff
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|
743 db_.GetAllMetadata(instanceMetadata, instanceId); |
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new extension for database plugin SDK: createInstance
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744 return StoreStatus_AlreadyStored; |
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diff
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|
745 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
746 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
747 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
748 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
749 // Warn about the creation of new resources. The order must be from instance to patient. |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
750 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
751 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
752 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
753 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
754 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 755 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
756 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
757 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
758 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
759 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
760 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
761 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
762 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
763 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
764 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
765 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
766 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
767 |
268
4bc02e2254ec
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264
diff
changeset
|
768 // Ensure there is enough room in the storage for the new instance |
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264
diff
changeset
|
769 uint64_t instanceSize = 0; |
4bc02e2254ec
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diff
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|
770 for (Attachments::const_iterator it = attachments.begin(); |
656 | 771 it != attachments.end(); ++it) |
268
4bc02e2254ec
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264
diff
changeset
|
772 { |
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diff
changeset
|
773 instanceSize += it->GetCompressedSize(); |
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264
diff
changeset
|
774 } |
4bc02e2254ec
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264
diff
changeset
|
775 |
3080
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started refactoring of ServerIndex::Store()
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diff
changeset
|
776 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
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diff
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|
777 |
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|
778 |
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changeset
|
779 // Attach the files to the newly created instance |
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3083
diff
changeset
|
780 for (Attachments::const_iterator it = attachments.begin(); |
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diff
changeset
|
781 it != attachments.end(); ++it) |
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diff
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|
782 { |
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changeset
|
783 db_.AddAttachment(instanceId, *it); |
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diff
changeset
|
784 } |
3080
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started refactoring of ServerIndex::Store()
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diff
changeset
|
785 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
786 |
0 | 787 { |
3083
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
788 ResourcesContent content; |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
789 |
3086
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|
790 // Populate the tags of the newly-created resources |
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diff
changeset
|
791 |
3083
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diff
changeset
|
792 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
793 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
794 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
795 { |
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changeset
|
796 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
797 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
798 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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changeset
|
799 if (status.isNewStudy_) |
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diff
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|
800 { |
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parents:
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changeset
|
801 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
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changeset
|
802 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
803 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
804 if (status.isNewPatient_) |
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diff
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|
805 { |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
806 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
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|
807 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
808 |
3086
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|
809 |
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|
810 // Attach the user-specified metadata |
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|
811 |
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|
812 for (MetadataMap::const_iterator |
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|
813 it = metadata.begin(); it != metadata.end(); ++it) |
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|
814 { |
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|
815 switch (it->first.first) |
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|
816 { |
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|
817 case ResourceType_Patient: |
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|
818 content.AddMetadata(status.patientId_, it->first.second, it->second); |
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|
819 break; |
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|
820 |
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diff
changeset
|
821 case ResourceType_Study: |
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|
822 content.AddMetadata(status.studyId_, it->first.second, it->second); |
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|
823 break; |
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|
824 |
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|
825 case ResourceType_Series: |
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|
826 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
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|
827 break; |
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diff
changeset
|
828 |
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changeset
|
829 case ResourceType_Instance: |
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|
830 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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changeset
|
831 it->first.second, it->second); |
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|
832 break; |
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diff
changeset
|
833 |
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|
834 default: |
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diff
changeset
|
835 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
836 } |
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changeset
|
837 } |
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changeset
|
838 |
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diff
changeset
|
839 |
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changeset
|
840 // Attach the auto-computed metadata for the patient/study/series levels |
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diff
changeset
|
841 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
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842 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
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843 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
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844 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
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845 |
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846 |
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847 // Attach the auto-computed metadata for the instance level, |
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848 // reflecting these additions into the input metadata map |
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849 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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850 MetadataType_Instance_ReceptionDate, now); |
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851 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
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852 instanceToStore.GetOrigin().GetRemoteAetC()); |
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853 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
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854 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
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855 |
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856 |
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857 { |
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858 std::string s; |
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859 |
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860 if (instanceToStore.LookupTransferSyntax(s)) |
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861 { |
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862 // New in Orthanc 1.2.0 |
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863 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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864 MetadataType_Instance_TransferSyntax, s); |
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865 } |
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866 |
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867 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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868 { |
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869 // New in Orthanc 1.4.0 |
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870 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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871 MetadataType_Instance_RemoteIp, s); |
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872 } |
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873 |
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874 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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875 { |
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876 // New in Orthanc 1.4.0 |
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877 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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878 MetadataType_Instance_CalledAet, s); |
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879 } |
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880 |
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881 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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882 { |
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883 // New in Orthanc 1.4.0 |
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884 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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885 MetadataType_Instance_HttpUsername, s); |
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886 } |
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887 } |
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888 |
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889 |
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890 const DicomValue* value; |
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891 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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892 !value->IsNull() && |
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893 !value->IsBinary()) |
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894 { |
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895 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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896 MetadataType_Instance_SopClassUid, value->GetContent()); |
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897 } |
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898 |
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899 |
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900 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
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901 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
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902 { |
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903 if (!value->IsNull() && |
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904 !value->IsBinary()) |
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905 { |
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906 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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907 MetadataType_Instance_IndexInSeries, value->GetContent()); |
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908 } |
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909 } |
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910 |
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911 |
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IDatabaseWrapper::SetResourcesContent
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|
912 db_.SetResourcesContent(content); |
3080
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913 } |
3086
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914 |
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915 |
0 | 916 |
1004
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DicomInstanceToStore
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|
917 // Check whether the series of this new instance is now completed |
3080
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started refactoring of ServerIndex::Store()
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918 if (status.isNewSeries_) |
202 | 919 { |
3080
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920 ComputeExpectedNumberOfInstances(db_, status.seriesId_, dicomSummary); |
202 | 921 } |
922 | |
3080
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923 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_); |
205
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924 if (seriesStatus == SeriesStatus_Complete) |
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925 { |
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926 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
205
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927 } |
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928 |
511
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929 // Mark the parent resources of this instance as unstable |
3080
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930 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
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|
931 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
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932 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
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933 |
278
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934 t.Commit(instanceSize); |
268
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935 |
0 | 936 return StoreStatus_Success; |
937 } | |
62 | 938 catch (OrthancException& e) |
0 | 939 { |
1247 | 940 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 941 } |
942 | |
943 return StoreStatus_Failure; | |
944 } | |
945 | |
946 | |
238 | 947 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 948 { |
206
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flush to disk thread
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949 boost::mutex::scoped_lock lock(mutex_); |
238 | 950 target = Json::objectValue; |
0 | 951 |
3020
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|
952 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 953 uint64_t us = db_.GetTotalUncompressedSize(); |
440
23e5b35e3c5c
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diff
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|
954 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 955 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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956 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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957 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 958 |
1247 | 959 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
960 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
961 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
962 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 963 } |
964 | |
187
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965 |
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966 |
585 | 967 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 968 { |
969 // Get the expected number of instances in this series (from the metadata) | |
1238 | 970 int64_t expected; |
971 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 972 { |
973 return SeriesStatus_Unknown; | |
974 } | |
975 | |
976 // Loop over the instances of this series | |
977 std::list<int64_t> children; | |
1247 | 978 db_.GetChildrenInternalId(children, id); |
199 | 979 |
1238 | 980 std::set<int64_t> instances; |
199 | 981 for (std::list<int64_t>::const_iterator |
656 | 982 it = children.begin(); it != children.end(); ++it) |
199 | 983 { |
984 // Get the index of this instance in the series | |
1238 | 985 int64_t index; |
986 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 987 { |
988 return SeriesStatus_Unknown; | |
989 } | |
990 | |
656 | 991 if (!(index > 0 && index <= expected)) |
199 | 992 { |
993 // Out-of-range instance index | |
994 return SeriesStatus_Inconsistent; | |
995 } | |
996 | |
997 if (instances.find(index) != instances.end()) | |
998 { | |
999 // Twice the same instance index | |
1000 return SeriesStatus_Inconsistent; | |
1001 } | |
1002 | |
1003 instances.insert(index); | |
1004 } | |
1005 | |
1238 | 1006 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 1007 { |
1008 return SeriesStatus_Complete; | |
1009 } | |
1010 else | |
1011 { | |
1012 return SeriesStatus_Missing; | |
1013 } | |
1014 } | |
1015 | |
1016 | |
202 | 1017 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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|
1018 int64_t resourceId, |
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1019 ResourceType resourceType) |
198
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1020 { |
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1021 DicomMap tags; |
1247 | 1022 db_.GetMainDicomTags(tags, resourceId); |
1676
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1023 |
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1024 if (resourceType == ResourceType_Study) |
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1025 { |
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|
1026 DicomMap t1, t2; |
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diff
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|
1027 tags.ExtractStudyInformation(t1); |
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|
1028 tags.ExtractPatientInformation(t2); |
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1029 |
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1030 target["MainDicomTags"] = Json::objectValue; |
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1031 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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|
1032 |
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1033 target["PatientMainDicomTags"] = Json::objectValue; |
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|
1034 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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|
1035 } |
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|
1036 else |
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|
1037 { |
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|
1038 target["MainDicomTags"] = Json::objectValue; |
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|
1039 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1040 } |
198
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1041 } |
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1042 |
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1043 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1044 const std::string& publicId, |
1045 ResourceType expectedType) | |
198
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1046 { |
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1047 result = Json::objectValue; |
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1048 |
206
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1049 boost::mutex::scoped_lock lock(mutex_); |
199 | 1050 |
198
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1051 // Lookup for the requested resource |
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1052 int64_t id; |
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1053 ResourceType type; |
1294 | 1054 if (!db_.LookupResource(id, type, publicId) || |
199 | 1055 type != expectedType) |
198
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1056 { |
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1057 return false; |
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1058 } |
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1059 |
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1060 // Find the parent resource (if it exists) |
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1061 if (type != ResourceType_Patient) |
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1062 { |
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1063 int64_t parentId; |
1247 | 1064 if (!db_.LookupParent(parentId, id)) |
198
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1065 { |
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1066 throw OrthancException(ErrorCode_InternalError); |
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1067 } |
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1068 |
1247 | 1069 std::string parent = db_.GetPublicId(parentId); |
198
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1070 |
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1071 switch (type) |
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1072 { |
269
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1073 case ResourceType_Study: |
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1074 result["ParentPatient"] = parent; |
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1075 break; |
198
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1076 |
269
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1077 case ResourceType_Series: |
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1078 result["ParentStudy"] = parent; |
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1079 break; |
198
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1080 |
269
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1081 case ResourceType_Instance: |
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1082 result["ParentSeries"] = parent; |
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1083 break; |
198
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1084 |
269
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1085 default: |
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1086 throw OrthancException(ErrorCode_InternalError); |
198
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1087 } |
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1088 } |
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1089 |
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1090 // List the children resources |
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1091 std::list<std::string> children; |
1247 | 1092 db_.GetChildrenPublicId(children, id); |
198
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1093 |
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1094 if (type != ResourceType_Instance) |
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1095 { |
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|
1096 Json::Value c = Json::arrayValue; |
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1097 |
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1098 for (std::list<std::string>::const_iterator |
656 | 1099 it = children.begin(); it != children.end(); ++it) |
198
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1100 { |
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1101 c.append(*it); |
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1102 } |
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1103 |
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1104 switch (type) |
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1105 { |
269
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1106 case ResourceType_Patient: |
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1107 result["Studies"] = c; |
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1108 break; |
198
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1109 |
269
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1110 case ResourceType_Study: |
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1111 result["Series"] = c; |
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1112 break; |
198
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1113 |
269
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1114 case ResourceType_Series: |
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1115 result["Instances"] = c; |
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1116 break; |
198
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1117 |
269
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1118 default: |
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1119 throw OrthancException(ErrorCode_InternalError); |
198
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1120 } |
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1121 } |
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1122 |
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1123 // Set the resource type |
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1124 switch (type) |
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1125 { |
269
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1126 case ResourceType_Patient: |
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1127 result["Type"] = "Patient"; |
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1128 break; |
198
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1129 |
269
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1130 case ResourceType_Study: |
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1131 result["Type"] = "Study"; |
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1132 break; |
199 | 1133 |
269
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1134 case ResourceType_Series: |
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1135 { |
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1136 result["Type"] = "Series"; |
434
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|
1137 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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1138 |
1238 | 1139 int64_t i; |
1237 | 1140 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1141 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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1142 else |
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1143 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
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1144 |
269
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1145 break; |
200
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changeset
|
1146 } |
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changeset
|
1147 |
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1148 case ResourceType_Instance: |
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1149 { |
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1150 result["Type"] = "Instance"; |
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1151 |
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1152 FileInfo attachment; |
1247 | 1153 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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1154 { |
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1155 throw OrthancException(ErrorCode_InternalError); |
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1156 } |
200
9c58b2b03cf0
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1157 |
269
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|
1158 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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diff
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|
1159 result["FileUuid"] = attachment.GetUuid(); |
200
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diff
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|
1160 |
1238 | 1161 int64_t i; |
1237 | 1162 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1163 result["IndexInSeries"] = static_cast<int>(i); |
269
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1164 else |
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1165 result["IndexInSeries"] = Json::nullValue; |
198
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1166 |
269
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1167 break; |
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1168 } |
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1169 |
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1170 default: |
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1171 throw OrthancException(ErrorCode_InternalError); |
198
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1172 } |
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1173 |
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1174 // Record the remaining information |
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1175 result["ID"] = publicId; |
1668
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reconstructing main dicom tags
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|
1176 MainDicomTagsToJson(result, id, type); |
198
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1177 |
315 | 1178 std::string tmp; |
1179 | |
1247 | 1180 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1181 { |
315 | 1182 result["AnonymizedFrom"] = tmp; |
1236 | 1183 } |
315 | 1184 |
1247 | 1185 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1186 { |
315 | 1187 result["ModifiedFrom"] = tmp; |
1236 | 1188 } |
315 | 1189 |
511
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1190 if (type == ResourceType_Patient || |
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1191 type == ResourceType_Study || |
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|
1192 type == ResourceType_Series) |
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1193 { |
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diff
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|
1194 result["IsStable"] = !unstableResources_.Contains(id); |
1148
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1195 |
1247 | 1196 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1197 { |
1148
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|
1198 result["LastUpdate"] = tmp; |
1236 | 1199 } |
511
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1200 } |
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1201 |
198
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1202 return true; |
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1203 } |
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1204 |
0 | 1205 |
232
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1206 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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1207 const std::string& instanceUuid, |
233 | 1208 FileContentType contentType) |
0 | 1209 { |
206
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1210 boost::mutex::scoped_lock lock(mutex_); |
0 | 1211 |
193
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1212 int64_t id; |
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1213 ResourceType type; |
1294 | 1214 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1215 { |
1113
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|
1216 throw OrthancException(ErrorCode_UnknownResource); |
192
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1217 } |
193
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1218 |
1247 | 1219 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1220 { |
233 | 1221 assert(attachment.GetContentType() == contentType); |
232
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1222 return true; |
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1223 } |
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1224 else |
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1225 { |
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|
1226 return false; |
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|
1227 } |
192
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|
1228 } |
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diff
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|
1229 |
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|
1230 |
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diff
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|
1231 |
1354 | 1232 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1233 ResourceType resourceType) |
0 | 1234 { |
1357 | 1235 boost::mutex::scoped_lock lock(mutex_); |
1236 db_.GetAllPublicIds(target, resourceType); | |
0 | 1237 } |
1238 | |
1239 | |
1509
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1240 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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|
1241 ResourceType resourceType, |
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|
1242 size_t since, |
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|
1243 size_t limit) |
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1244 { |
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|
1245 if (limit == 0) |
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|
1246 { |
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|
1247 target.clear(); |
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|
1248 return; |
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|
1249 } |
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|
1250 |
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|
1251 boost::mutex::scoped_lock lock(mutex_); |
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|
1252 db_.GetAllPublicIds(target, resourceType, since, limit); |
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|
1253 } |
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1254 |
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|
1255 |
1244 | 1256 template <typename T> |
1257 static void FormatLog(Json::Value& target, | |
1258 const std::list<T>& log, | |
1259 const std::string& name, | |
1260 bool done, | |
1261 int64_t since) | |
1240 | 1262 { |
1263 Json::Value items = Json::arrayValue; | |
1244 | 1264 for (typename std::list<T>::const_iterator |
1304 | 1265 it = log.begin(); it != log.end(); ++it) |
1240 | 1266 { |
1267 Json::Value item; | |
1268 it->Format(item); | |
1269 items.append(item); | |
1270 } | |
1271 | |
1272 target = Json::objectValue; | |
1244 | 1273 target[name] = items; |
1240 | 1274 target["Done"] = done; |
1275 | |
1305 | 1276 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1277 target["Last"] = static_cast<int>(last); |
1278 } | |
1279 | |
1280 | |
1247 | 1281 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1282 int64_t since, |
0 | 1283 unsigned int maxResults) |
1284 { | |
1240 | 1285 std::list<ServerIndexChange> changes; |
1286 bool done; | |
1287 | |
1288 { | |
1289 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1290 |
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1291 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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|
1292 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1293 Transaction transaction(*this); |
1247 | 1294 db_.GetChanges(changes, done, since, maxResults); |
2717
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|
1295 transaction.Commit(0); |
1240 | 1296 } |
1297 | |
1244 | 1298 FormatLog(target, changes, "Changes", done, since); |
237
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1299 } |
0 | 1300 |
1240 | 1301 |
1247 | 1302 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1303 { |
1240 | 1304 std::list<ServerIndexChange> changes; |
1305 | |
1306 { | |
1307 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1308 |
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1309 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1310 // "GetLastChange()" involves calls to "GetPublicId()" |
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1311 Transaction transaction(*this); |
1247 | 1312 db_.GetLastChange(changes); |
2717
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|
1313 transaction.Commit(0); |
1240 | 1314 } |
1315 | |
1244 | 1316 FormatLog(target, changes, "Changes", true, 0); |
0 | 1317 } |
231 | 1318 |
1240 | 1319 |
231 | 1320 void ServerIndex::LogExportedResource(const std::string& publicId, |
1321 const std::string& remoteModality) | |
1322 { | |
1323 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1324 Transaction transaction(*this); |
231 | 1325 |
1326 int64_t id; | |
1327 ResourceType type; | |
1294 | 1328 if (!db_.LookupResource(id, type, publicId)) |
231 | 1329 { |
2573
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StoreScuJob, Orthanc Explorer for jobs
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|
1330 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1331 } |
1332 | |
1333 std::string patientId; | |
1334 std::string studyInstanceUid; | |
1335 std::string seriesInstanceUid; | |
1336 std::string sopInstanceUid; | |
1337 | |
1338 int64_t currentId = id; | |
1339 ResourceType currentType = type; | |
1340 | |
1341 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1342 bool done = false; | |
1343 while (!done) | |
1344 { | |
1345 DicomMap map; | |
1247 | 1346 db_.GetMainDicomTags(map, currentId); |
231 | 1347 |
1348 switch (currentType) | |
1349 { | |
269
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1350 case ResourceType_Patient: |
2090
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|
1351 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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|
1352 { |
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improved robustness for files with no PatientID
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changeset
|
1353 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1354 } |
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1355 done = true; |
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1356 break; |
231 | 1357 |
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1358 case ResourceType_Study: |
2090
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|
1359 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1360 { |
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1361 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1362 } |
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1363 currentType = ResourceType_Patient; |
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1364 break; |
231 | 1365 |
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1366 case ResourceType_Series: |
2090
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1367 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1368 { |
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1369 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1370 } |
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1371 currentType = ResourceType_Study; |
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1372 break; |
231 | 1373 |
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1374 case ResourceType_Instance: |
2090
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1375 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1376 { |
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1377 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1378 } |
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1379 currentType = ResourceType_Series; |
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1380 break; |
231 | 1381 |
269
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1382 default: |
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1383 throw OrthancException(ErrorCode_InternalError); |
231 | 1384 } |
1385 | |
1386 // If we have not reached the Patient level, find the parent of | |
1387 // the current resource | |
1388 if (!done) | |
1389 { | |
1247 | 1390 bool ok = db_.LookupParent(currentId, currentId); |
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1391 assert(ok); |
231 | 1392 } |
1393 } | |
1394 | |
1246 | 1395 ExportedResource resource(-1, |
1396 type, | |
1397 publicId, | |
1398 remoteModality, | |
2475
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1399 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1400 patientId, |
1401 studyInstanceUid, | |
1402 seriesInstanceUid, | |
1403 sopInstanceUid); | |
1310
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1404 |
1247 | 1405 db_.LogExportedResource(resource); |
1310
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1406 transaction.Commit(0); |
231 | 1407 } |
1408 | |
1409 | |
1247 | 1410 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1411 int64_t since, |
1412 unsigned int maxResults) | |
1413 { | |
1244 | 1414 std::list<ExportedResource> exported; |
1415 bool done; | |
1416 | |
1417 { | |
1418 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1419 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1420 } |
1421 | |
1422 FormatLog(target, exported, "Exports", done, since); | |
231 | 1423 } |
237
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1424 |
1244 | 1425 |
1247 | 1426 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1427 { |
1244 | 1428 std::list<ExportedResource> exported; |
1429 | |
1430 { | |
1431 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1432 db_.GetLastExportedResource(exported); |
1244 | 1433 } |
1434 | |
1435 FormatLog(target, exported, "Exports", true, 0); | |
237
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1436 } |
268
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1437 |
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1438 |
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1439 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1440 { |
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1441 if (maximumStorageSize_ != 0) |
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1442 { |
3020
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|
1443 assert(maximumStorageSize_ >= instanceSize); |
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1444 |
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1445 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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1446 { |
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1447 return true; |
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1448 } |
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1449 } |
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1450 |
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1451 if (maximumPatients_ != 0) |
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1452 { |
1247 | 1453 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1454 if (patientCount > maximumPatients_) |
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1455 { |
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1456 return true; |
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1457 } |
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1458 } |
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1459 |
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1460 return false; |
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1461 } |
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1462 |
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1463 |
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1464 void ServerIndex::Recycle(uint64_t instanceSize, |
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1465 const std::string& newPatientId) |
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1466 { |
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1467 if (!IsRecyclingNeeded(instanceSize)) |
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1468 { |
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1469 return; |
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1470 } |
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1471 |
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1472 // Check whether other DICOM instances from this patient are |
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1473 // already stored |
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1474 int64_t patientToAvoid; |
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|
1475 ResourceType type; |
1294 | 1476 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1477 |
269
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1478 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1479 { |
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1480 throw OrthancException(ErrorCode_InternalError); |
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1481 } |
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1482 |
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1483 // Iteratively select patient to remove until there is enough |
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1484 // space in the DICOM store |
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1485 int64_t patientToRecycle; |
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1486 while (true) |
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1487 { |
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1488 // If other instances of this patient are already in the store, |
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1489 // we must avoid to recycle them |
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1490 bool ok = hasPatientToAvoid ? |
1247 | 1491 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1492 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1493 |
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1494 if (!ok) |
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1495 { |
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1496 throw OrthancException(ErrorCode_FullStorage); |
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1497 } |
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1498 |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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|
1499 VLOG(1) << "Recycling one patient"; |
1247 | 1500 db_.DeleteResource(patientToRecycle); |
269
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1501 |
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1502 if (!IsRecyclingNeeded(instanceSize)) |
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1503 { |
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1504 // OK, we're done |
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1505 break; |
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1506 } |
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1507 } |
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1508 } |
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1509 |
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1510 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1511 { |
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1512 boost::mutex::scoped_lock lock(mutex_); |
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1513 maximumPatients_ = count; |
270
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1514 |
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1515 if (count == 0) |
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1516 { |
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1517 LOG(WARNING) << "No limit on the number of stored patients"; |
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1518 } |
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1519 else |
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1520 { |
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1521 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1522 } |
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1523 |
269
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1524 StandaloneRecycling(); |
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1525 } |
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1526 |
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1527 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1528 { |
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1529 boost::mutex::scoped_lock lock(mutex_); |
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1530 maximumStorageSize_ = size; |
270
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1531 |
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1532 if (size == 0) |
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1533 { |
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1534 LOG(WARNING) << "No limit on the size of the storage area"; |
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1535 } |
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1536 else |
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1537 { |
440
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|
1538 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1539 } |
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1540 |
269
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1541 StandaloneRecycling(); |
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1542 } |
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1543 |
2825
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diff
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|
1544 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1545 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1546 boost::mutex::scoped_lock lock(mutex_); |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1547 overwrite_ = overwrite; |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1548 } |
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diff
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|
1549 |
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1550 |
272
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1551 void ServerIndex::StandaloneRecycling() |
269
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1552 { |
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1553 // WARNING: No mutex here, do not include this as a public method |
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1554 Transaction t(*this); |
269
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1555 Recycle(0, ""); |
278
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1556 t.Commit(0); |
269
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1557 } |
272
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1558 |
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1559 |
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1560 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1561 { |
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1562 boost::mutex::scoped_lock lock(mutex_); |
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1563 |
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1564 // Lookup for the requested resource |
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1565 int64_t id; |
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1566 ResourceType type; |
1294 | 1567 if (!db_.LookupResource(id, type, publicId) || |
272
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1568 type != ResourceType_Patient) |
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1569 { |
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1570 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1571 } |
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1572 |
1247 | 1573 return db_.IsProtectedPatient(id); |
272
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1574 } |
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|
1575 |
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1576 |
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1577 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1578 bool isProtected) |
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|
1579 { |
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1580 boost::mutex::scoped_lock lock(mutex_); |
1310
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1581 Transaction transaction(*this); |
272
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1582 |
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1583 // Lookup for the requested resource |
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1584 int64_t id; |
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|
1585 ResourceType type; |
1294 | 1586 if (!db_.LookupResource(id, type, publicId) || |
272
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1587 type != ResourceType_Patient) |
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1588 { |
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1589 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1590 } |
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1591 |
1247 | 1592 db_.SetProtectedPatient(id, isProtected); |
1310
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1593 transaction.Commit(0); |
272
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1594 |
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1595 if (isProtected) |
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1596 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1597 else |
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1598 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1599 } |
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1600 |
304 | 1601 |
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1602 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1603 const std::string& publicId) |
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1604 { |
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1605 result.clear(); |
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1606 |
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1607 boost::mutex::scoped_lock lock(mutex_); |
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1608 |
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1609 ResourceType type; |
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1610 int64_t resource; |
1294 | 1611 if (!db_.LookupResource(resource, type, publicId)) |
714
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1612 { |
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1613 throw OrthancException(ErrorCode_UnknownResource); |
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1614 } |
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1615 |
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1616 if (type == ResourceType_Instance) |
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1617 { |
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1618 // An instance cannot have a child |
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1619 throw OrthancException(ErrorCode_BadParameterType); |
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1620 } |
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1621 |
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1622 std::list<int64_t> tmp; |
1247 | 1623 db_.GetChildrenInternalId(tmp, resource); |
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1624 |
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1625 for (std::list<int64_t>::const_iterator |
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1626 it = tmp.begin(); it != tmp.end(); ++it) |
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1627 { |
1247 | 1628 result.push_back(db_.GetPublicId(*it)); |
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1629 } |
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1630 } |
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1631 |
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1632 |
304 | 1633 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1634 const std::string& publicId) | |
1635 { | |
1636 result.clear(); | |
1637 | |
1638 boost::mutex::scoped_lock lock(mutex_); | |
1639 | |
1640 ResourceType type; | |
1641 int64_t top; | |
1294 | 1642 if (!db_.LookupResource(top, type, publicId)) |
304 | 1643 { |
1644 throw OrthancException(ErrorCode_UnknownResource); | |
1645 } | |
1646 | |
1647 if (type == ResourceType_Instance) | |
1648 { | |
1649 // The resource is already an instance: Do not go down the hierarchy | |
1650 result.push_back(publicId); | |
1651 return; | |
1652 } | |
1653 | |
1654 std::stack<int64_t> toExplore; | |
1655 toExplore.push(top); | |
1656 | |
1657 std::list<int64_t> tmp; | |
1658 | |
1659 while (!toExplore.empty()) | |
1660 { | |
1661 // Get the internal ID of the current resource | |
1662 int64_t resource = toExplore.top(); | |
1663 toExplore.pop(); | |
1664 | |
1247 | 1665 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1666 { |
1247 | 1667 result.push_back(db_.GetPublicId(resource)); |
304 | 1668 } |
1669 else | |
1670 { | |
1671 // Tag all the children of this resource as to be explored | |
1247 | 1672 db_.GetChildrenInternalId(tmp, resource); |
304 | 1673 for (std::list<int64_t>::const_iterator |
656 | 1674 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1675 { |
1676 toExplore.push(*it); | |
1677 } | |
1678 } | |
1679 } | |
1680 } | |
1681 | |
306
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1682 |
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1683 void ServerIndex::SetMetadata(const std::string& publicId, |
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1684 MetadataType type, |
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1685 const std::string& value) |
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1686 { |
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1687 boost::mutex::scoped_lock lock(mutex_); |
1773
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|
1688 Transaction t(*this); |
306
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1689 |
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1690 ResourceType rtype; |
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1691 int64_t id; |
1294 | 1692 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1693 { |
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1694 throw OrthancException(ErrorCode_UnknownResource); |
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1695 } |
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1696 |
1247 | 1697 db_.SetMetadata(id, type, value); |
1773
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|
1698 |
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|
1699 if (IsUserMetadata(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
1700 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
1701 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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diff
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|
1702 } |
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|
1703 |
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|
1704 t.Commit(0); |
306
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1705 } |
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1706 |
438 | 1707 |
1708 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1709 MetadataType type) | |
1710 { | |
1711 boost::mutex::scoped_lock lock(mutex_); | |
1773
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diff
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|
1712 Transaction t(*this); |
438 | 1713 |
1714 ResourceType rtype; | |
1715 int64_t id; | |
1294 | 1716 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1717 { |
1718 throw OrthancException(ErrorCode_UnknownResource); | |
1719 } | |
1720 | |
1247 | 1721 db_.DeleteMetadata(id, type); |
1773
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|
1722 |
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|
1723 if (IsUserMetadata(type)) |
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diff
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|
1724 { |
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diff
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|
1725 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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diff
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|
1726 } |
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|
1727 |
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|
1728 t.Commit(0); |
438 | 1729 } |
1730 | |
1731 | |
306
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1732 bool ServerIndex::LookupMetadata(std::string& target, |
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1733 const std::string& publicId, |
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1734 MetadataType type) |
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1735 { |
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|
1736 boost::mutex::scoped_lock lock(mutex_); |
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1737 |
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1738 ResourceType rtype; |
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1739 int64_t id; |
1294 | 1740 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1741 { |
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1742 throw OrthancException(ErrorCode_UnknownResource); |
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|
1743 } |
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1744 |
1247 | 1745 return db_.LookupMetadata(target, id, type); |
306
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1746 } |
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1747 |
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1748 |
739 | 1749 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1750 const std::string& publicId) |
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|
1751 { |
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|
1752 boost::mutex::scoped_lock lock(mutex_); |
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1753 |
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|
1754 ResourceType rtype; |
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|
1755 int64_t id; |
1294 | 1756 if (!db_.LookupResource(id, rtype, publicId)) |
436
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|
1757 { |
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diff
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|
1758 throw OrthancException(ErrorCode_UnknownResource); |
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|
1759 } |
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diff
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|
1760 |
1247 | 1761 db_.ListAvailableMetadata(target, id); |
436
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|
1762 } |
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|
1763 |
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|
1764 |
697
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|
1765 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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diff
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|
1766 const std::string& publicId, |
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diff
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|
1767 ResourceType expectedType) |
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diff
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|
1768 { |
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diff
changeset
|
1769 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1770 |
dd1ce9a2844c
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diff
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|
1771 ResourceType type; |
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diff
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|
1772 int64_t id; |
1294 | 1773 if (!db_.LookupResource(id, type, publicId) || |
697
dd1ce9a2844c
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diff
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|
1774 expectedType != type) |
dd1ce9a2844c
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diff
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|
1775 { |
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diff
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|
1776 throw OrthancException(ErrorCode_UnknownResource); |
dd1ce9a2844c
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diff
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|
1777 } |
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diff
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|
1778 |
1247 | 1779 db_.ListAvailableAttachments(target, id); |
697
dd1ce9a2844c
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diff
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|
1780 } |
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|
1781 |
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|
1782 |
306
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1783 bool ServerIndex::LookupParent(std::string& target, |
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1784 const std::string& publicId) |
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1785 { |
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|
1786 boost::mutex::scoped_lock lock(mutex_); |
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|
1787 |
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1788 ResourceType type; |
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1789 int64_t id; |
1294 | 1790 if (!db_.LookupResource(id, type, publicId)) |
306
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|
1791 { |
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|
1792 throw OrthancException(ErrorCode_UnknownResource); |
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1793 } |
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1794 |
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1795 int64_t parentId; |
1247 | 1796 if (db_.LookupParent(parentId, id)) |
306
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1797 { |
1247 | 1798 target = db_.GetPublicId(parentId); |
306
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1799 return true; |
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1800 } |
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1801 else |
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1802 { |
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1803 return false; |
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1804 } |
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1805 } |
310 | 1806 |
1807 | |
1808 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1809 { | |
1810 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1811 Transaction transaction(*this); |
311 | 1812 |
1237 | 1813 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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1814 transaction.Commit(0); |
311 | 1815 |
1816 return seq; | |
310 | 1817 } |
315 | 1818 |
1819 | |
1820 | |
1821 void ServerIndex::LogChange(ChangeType changeType, | |
1822 const std::string& publicId) | |
1823 { | |
1824 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1825 Transaction transaction(*this); |
315 | 1826 |
1827 int64_t id; | |
1828 ResourceType type; | |
1294 | 1829 if (!db_.LookupResource(id, type, publicId)) |
315 | 1830 { |
1831 throw OrthancException(ErrorCode_UnknownResource); | |
1832 } | |
1833 | |
1237 | 1834 LogChange(id, changeType, type, publicId); |
1310
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1835 transaction.Commit(0); |
315 | 1836 } |
413
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1837 |
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1838 |
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|
1839 void ServerIndex::DeleteChanges() |
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1840 { |
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changeset
|
1841 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1842 db_.ClearChanges(); |
413
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1843 } |
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1844 |
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1845 void ServerIndex::DeleteExportedResources() |
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1846 { |
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changeset
|
1847 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1848 db_.ClearExportedResources(); |
413
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1849 } |
440
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1850 |
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1851 |
2987
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diff
changeset
|
1852 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1853 /* out */ uint64_t& uncompressedSize, |
1854 /* out */ unsigned int& countStudies, | |
1855 /* out */ unsigned int& countSeries, | |
1856 /* out */ unsigned int& countInstances, | |
2987
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|
1857 /* out */ uint64_t& dicomDiskSize, |
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|
1858 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1859 /* in */ int64_t id, |
1860 /* in */ ResourceType type) | |
440
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|
1861 { |
646 | 1862 std::stack<int64_t> toExplore; |
1863 toExplore.push(id); | |
440
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1864 |
646 | 1865 countInstances = 0; |
1866 countSeries = 0; | |
1867 countStudies = 0; | |
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1868 diskSize = 0; |
646 | 1869 uncompressedSize = 0; |
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1870 dicomDiskSize = 0; |
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1871 dicomUncompressedSize = 0; |
440
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1872 |
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1873 while (!toExplore.empty()) |
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1874 { |
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1875 // Get the internal ID of the current resource |
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1876 int64_t resource = toExplore.top(); |
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1877 toExplore.pop(); |
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1878 |
1247 | 1879 ResourceType thisType = db_.GetResourceType(resource); |
440
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1880 |
702
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1881 std::list<FileContentType> f; |
1247 | 1882 db_.ListAvailableAttachments(f, resource); |
702
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1883 |
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1884 for (std::list<FileContentType>::const_iterator |
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1885 it = f.begin(); it != f.end(); ++it) |
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1886 { |
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1887 FileInfo attachment; |
1247 | 1888 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1889 { |
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1890 if (attachment.GetContentType() == FileContentType_Dicom) |
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1891 { |
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1892 dicomDiskSize += attachment.GetCompressedSize(); |
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1893 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1894 } |
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1895 |
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1896 diskSize += attachment.GetCompressedSize(); |
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1897 uncompressedSize += attachment.GetUncompressedSize(); |
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1898 } |
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1899 } |
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1900 |
440
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1901 if (thisType == ResourceType_Instance) |
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1902 { |
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1903 countInstances++; |
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1904 } |
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1905 else |
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1906 { |
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1907 switch (thisType) |
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1908 { |
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1909 case ResourceType_Study: |
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1910 countStudies++; |
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1911 break; |
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1912 |
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1913 case ResourceType_Series: |
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1914 countSeries++; |
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1915 break; |
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1916 |
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1917 default: |
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1918 break; |
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1919 } |
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1920 |
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1921 // Tag all the children of this resource as to be explored |
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1922 std::list<int64_t> tmp; |
1247 | 1923 db_.GetChildrenInternalId(tmp, resource); |
440
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1924 for (std::list<int64_t>::const_iterator |
656 | 1925 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1926 { |
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1927 toExplore.push(*it); |
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1928 } |
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1929 } |
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1930 } |
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1931 |
646 | 1932 if (countStudies == 0) |
1933 { | |
1934 countStudies = 1; | |
1935 } | |
1936 | |
1937 if (countSeries == 0) | |
1938 { | |
1939 countSeries = 1; | |
1940 } | |
1941 } | |
1942 | |
1943 | |
1944 | |
1945 void ServerIndex::GetStatistics(Json::Value& target, | |
1946 const std::string& publicId) | |
1947 { | |
1948 boost::mutex::scoped_lock lock(mutex_); | |
1949 | |
1950 ResourceType type; | |
1951 int64_t top; | |
1294 | 1952 if (!db_.LookupResource(top, type, publicId)) |
646 | 1953 { |
1954 throw OrthancException(ErrorCode_UnknownResource); | |
1955 } | |
1956 | |
1957 uint64_t uncompressedSize; | |
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1958 uint64_t diskSize; |
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1959 uint64_t dicomUncompressedSize; |
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1960 uint64_t dicomDiskSize; |
646 | 1961 unsigned int countStudies; |
1962 unsigned int countSeries; | |
1963 unsigned int countInstances; | |
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1964 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1965 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1966 |
440
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1967 target = Json::objectValue; |
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1968 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1969 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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1970 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
61ce8147f30d
custom database back-end
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1306
diff
changeset
|
1971 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1972 |
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1973 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1974 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1975 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1976 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1977 |
440
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1978 switch (type) |
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changeset
|
1979 { |
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changeset
|
1980 // Do NOT add "break" below this point! |
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1981 case ResourceType_Patient: |
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1982 target["CountStudies"] = countStudies; |
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1983 |
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1984 case ResourceType_Study: |
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1985 target["CountSeries"] = countSeries; |
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|
1986 |
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changeset
|
1987 case ResourceType_Series: |
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1988 target["CountInstances"] = countInstances; |
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|
1989 |
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|
1990 case ResourceType_Instance: |
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|
1991 default: |
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changeset
|
1992 break; |
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changeset
|
1993 } |
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|
1994 } |
511
3b735fdf320b
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440
diff
changeset
|
1995 |
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diff
changeset
|
1996 |
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1997 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 1998 /* out */ uint64_t& uncompressedSize, |
1999 /* out */ unsigned int& countStudies, | |
2000 /* out */ unsigned int& countSeries, | |
2001 /* out */ unsigned int& countInstances, | |
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2002 /* out */ uint64_t& dicomDiskSize, |
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2003 /* out */ uint64_t& dicomUncompressedSize, |
646 | 2004 const std::string& publicId) |
2005 { | |
2006 boost::mutex::scoped_lock lock(mutex_); | |
2007 | |
2008 ResourceType type; | |
2009 int64_t top; | |
1294 | 2010 if (!db_.LookupResource(top, type, publicId)) |
646 | 2011 { |
2012 throw OrthancException(ErrorCode_UnknownResource); | |
2013 } | |
2014 | |
2987
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2015 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2016 countSeries, countInstances, dicomDiskSize, |
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2017 dicomUncompressedSize, top, type); |
646 | 2018 } |
2019 | |
2020 | |
2665
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2021 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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2022 unsigned int threadSleep) |
511
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2023 { |
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2024 int stableAge; |
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2025 |
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2026 { |
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2027 OrthancConfiguration::ReaderLock lock; |
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2028 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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2029 } |
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2030 |
511
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2031 if (stableAge <= 0) |
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2032 { |
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2033 stableAge = 60; |
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2034 } |
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2035 |
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2036 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2037 |
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2038 while (!that->done_) |
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2039 { |
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2040 // Check for stable resources each few seconds |
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2041 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2042 |
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2043 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2044 |
511
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2045 while (!that->unstableResources_.IsEmpty() && |
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2046 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2047 { |
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2048 // This DICOM resource has not received any new instance for |
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2049 // some time. It can be considered as stable. |
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2050 |
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2051 UnstableResourcePayload payload; |
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2052 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2053 |
513 | 2054 // Ensure that the resource is still existing before logging the change |
1247 | 2055 if (that->db_.IsExistingResource(id)) |
511
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2056 { |
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2057 switch (payload.GetResourceType()) |
513 | 2058 { |
1177
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2059 case ResourceType_Patient: |
1237 | 2060 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2061 break; |
511
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2062 |
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2063 case ResourceType_Study: |
1237 | 2064 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2065 break; |
511
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2066 |
1177
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2067 case ResourceType_Series: |
1237 | 2068 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2069 break; |
2070 | |
2071 default: | |
2072 throw OrthancException(ErrorCode_InternalError); | |
2073 } | |
2074 | |
2075 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2076 } |
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2077 } |
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2078 } |
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2079 |
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2080 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2081 } |
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2082 |
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2083 |
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2084 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2085 Orthanc::ResourceType type, |
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2086 const std::string& publicId) |
511
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2087 { |
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2088 // WARNING: Before calling this method, "mutex_" must be locked. |
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2089 |
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2090 assert(type == Orthanc::ResourceType_Patient || |
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2091 type == Orthanc::ResourceType_Study || |
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2092 type == Orthanc::ResourceType_Series); |
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2093 |
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2094 UnstableResourcePayload payload(type, publicId); |
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2095 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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2096 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
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2097 |
1237 | 2098 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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2099 } |
521 | 2100 |
2101 | |
2102 | |
3034
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|
2103 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
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2104 ResourceType level, |
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2105 const DicomTag& tag, |
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2106 const std::string& value) |
615 | 2107 { |
1727 | 2108 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2109 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2110 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2111 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2112 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2113 |
615 | 2114 result.clear(); |
2115 | |
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2116 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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2117 |
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2118 std::vector<DatabaseConstraint> query; |
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2119 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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2120 |
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2121 std::list<std::string> tmp; |
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2122 |
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2123 { |
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2124 boost::mutex::scoped_lock lock(mutex_); |
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2125 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
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2126 } |
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2127 |
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2128 CopyListToVector(result, tmp); |
615 | 2129 } |
2130 | |
2131 | |
699
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2132 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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2133 const std::string& publicId) |
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2134 { |
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2135 boost::mutex::scoped_lock lock(mutex_); |
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2136 |
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2137 Transaction t(*this); |
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2138 |
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2139 ResourceType resourceType; |
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2140 int64_t resourceId; |
1294 | 2141 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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2142 { |
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2143 return StoreStatus_Failure; // Inexistent resource |
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2144 } |
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2145 |
704
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2146 // Remove possible previous attachment |
1247 | 2147 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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2148 |
704
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2149 // Locate the patient of the target resource |
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2150 int64_t patientId = resourceId; |
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2151 for (;;) |
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2152 { |
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2153 int64_t parent; |
1247 | 2154 if (db_.LookupParent(parent, patientId)) |
704
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2155 { |
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2156 // We have not reached the patient level yet |
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diff
changeset
|
2157 patientId = parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2158 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2159 else |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2160 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2161 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2162 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2163 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2164 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2165 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2166 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2167 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2168 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2169 |
1247 | 2170 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2171 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2172 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2173 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2174 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2175 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2176 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2177 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2178 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2179 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2180 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2181 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2182 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2183 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2184 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2185 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2186 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2187 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2188 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2189 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2190 int64_t id; |
1294 | 2191 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2192 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2193 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2194 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2195 |
1247 | 2196 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2197 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2198 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2199 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2200 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2201 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2202 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2203 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2204 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2205 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2206 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2207 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2208 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2209 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2210 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2211 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2212 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2213 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2214 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2215 int64_t id; |
1294 | 2216 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2217 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2218 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2219 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2220 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2221 std::list<MetadataType> metadata; |
1247 | 2222 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2223 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2224 for (std::list<MetadataType>::const_iterator |
1304 | 2225 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2226 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2227 std::string key = EnumerationToString(*it); |
1238 | 2228 |
2229 std::string value; | |
1247 | 2230 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2231 { |
2232 value.clear(); | |
2233 } | |
2234 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2235 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2236 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2237 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2238 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2239 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2240 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2241 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2242 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2243 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2244 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2245 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2246 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2247 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2248 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2249 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2250 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2251 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2252 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2253 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2254 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2255 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2256 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2257 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2258 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2259 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2260 { |
1239 | 2261 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2262 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2263 if (LookupGlobalProperty(value, property)) |
1239 | 2264 { |
2265 return value; | |
2266 } | |
2267 else | |
2268 { | |
2269 return defaultValue; | |
2270 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2271 } |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2272 |
1352 | 2273 |
2274 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2275 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2276 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2277 ResourceType levelOfInterest) |
1352 | 2278 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2279 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2280 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2281 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2282 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2283 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2284 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2285 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2286 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2287 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2288 |
1352 | 2289 result.Clear(); |
2290 | |
2291 boost::mutex::scoped_lock lock(mutex_); | |
2292 | |
2293 // Lookup for the requested resource | |
2294 int64_t id; | |
2295 ResourceType type; | |
2296 if (!db_.LookupResource(id, type, publicId) || | |
2297 type != expectedType) | |
2298 { | |
2299 return false; | |
2300 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2301 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2302 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2303 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2304 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2305 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2306 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2307 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2308 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2309 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2310 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2311 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2312 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2313 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2314 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2315 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2316 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2317 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2318 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 } |
1352 | 2321 else |
2322 { | |
2323 db_.GetMainDicomTags(result, id); | |
2324 return true; | |
2325 } | |
2326 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2327 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2328 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2329 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2330 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2331 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2332 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2333 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2334 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2335 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2336 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2337 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2338 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2339 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2340 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2341 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2342 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2343 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2344 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2345 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2346 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2347 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2348 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2349 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2350 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2351 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2352 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2353 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2354 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2355 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2356 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2357 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2358 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2359 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2360 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2361 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2362 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2363 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2364 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2365 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2366 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2367 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2368 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2369 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2370 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2371 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2373 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2377 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2394 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2401 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2402 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2403 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2404 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2405 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2406 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2407 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2408 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2409 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2410 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2411 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2412 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2413 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2414 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2415 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2416 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2417 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2418 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2419 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2420 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2421 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2422 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2423 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2424 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2425 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2426 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2427 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2428 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2429 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2430 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2431 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2432 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2433 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2434 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2435 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2436 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2437 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2438 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2439 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2440 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2441 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2442 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2443 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2444 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2445 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2446 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2447 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2448 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2449 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2450 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2451 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2452 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2453 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2454 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2455 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2456 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2457 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2458 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2459 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2460 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2461 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2462 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2463 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2464 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2465 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2466 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2467 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2468 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2469 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2470 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2471 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2472 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2473 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2474 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2475 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2476 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2477 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2478 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2479 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2480 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2481 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2482 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2483 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2484 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2485 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2486 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2487 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2488 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2489 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2490 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2515 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2516 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2517 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2518 const DatabaseLookup& source, |
2519 ResourceType queryLevel) const | |
2520 { | |
2521 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2522 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2523 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2524 target.reserve(source.GetConstraintsCount()); |
3031 | 2525 |
3027 | 2526 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2527 { | |
3031 | 2528 ResourceType level; |
2529 DicomTagType type; | |
3027 | 2530 |
3031 | 2531 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2532 | |
2533 if (type == DicomTagType_Identifier || | |
2534 type == DicomTagType_Main) | |
3027 | 2535 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2536 // Use the fact that patient-level tags are copied at the study level |
3031 | 2537 if (level == ResourceType_Patient && |
2538 queryLevel != ResourceType_Patient) | |
3027 | 2539 { |
3031 | 2540 level = ResourceType_Study; |
3027 | 2541 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2542 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2543 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2544 } |
2545 } | |
2546 } | |
2547 | |
2548 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2549 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3034
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|
2550 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2551 const DatabaseLookup& lookup, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2552 ResourceType queryLevel, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2553 size_t limit) |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2554 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2555 std::vector<DatabaseConstraint> normalized; |
3027 | 2556 NormalizeLookup(normalized, lookup, queryLevel); |
2557 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2558 std::list<std::string> resourcesList, instancesList; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2559 |
3027 | 2560 { |
2561 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2562 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2563 if (instancesId == NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2564 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2565 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2566 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2567 else |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2568 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2569 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2570 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2571 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2572 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2573 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2574 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
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changeset
|
2575 if (instancesId != NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2576 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2577 CopyListToVector(*instancesId, instancesList); |
3027 | 2578 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
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|
2579 } |
0 | 2580 } |