Mercurial > hg > orthanc
annotate Core/DicomParsing/FromDcmtkBridge.cpp @ 3906:f0dd5ded8927 transcoding
refactoring using IDicomTranscoder::TranscodedDicom
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 08 May 2020 11:16:16 +0200 |
parents | 210af28c4087 |
children | 74eeadf5d51d |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
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33 |
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34 #include "../PrecompiledHeaders.h" |
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35 |
71 | 36 #ifndef NOMINMAX |
37 #define NOMINMAX | |
38 #endif | |
0 | 39 |
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40 #if !defined(ORTHANC_SANDBOXED) |
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41 # error The macro ORTHANC_SANDBOXED must be defined |
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42 #endif |
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43 |
3117 | 44 #if !defined(DCMTK_VERSION_NUMBER) |
45 # error The macro DCMTK_VERSION_NUMBER must be defined | |
46 #endif | |
47 | |
0 | 48 #include "FromDcmtkBridge.h" |
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49 #include "ToDcmtkBridge.h" |
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50 #include "../Compatibility.h" |
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51 #include "../Logging.h" |
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52 #include "../Toolbox.h" |
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53 #include "../OrthancException.h" |
0 | 54 |
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55 #if ORTHANC_SANDBOXED == 0 |
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56 # include "../TemporaryFile.h" |
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57 #endif |
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58 |
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59 #include <list> |
71 | 60 #include <limits> |
61 | |
0 | 62 #include <boost/lexical_cast.hpp> |
1656 | 63 #include <boost/filesystem.hpp> |
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64 #include <boost/algorithm/string/predicate.hpp> |
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65 #include <boost/algorithm/string/join.hpp> |
0 | 66 |
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67 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 68 #include <dcmtk/dcmdata/dcdicent.h> |
69 #include <dcmtk/dcmdata/dcdict.h> | |
70 #include <dcmtk/dcmdata/dcfilefo.h> | |
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71 #include <dcmtk/dcmdata/dcistrmb.h> |
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72 #include <dcmtk/dcmdata/dcostrmb.h> |
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73 #include <dcmtk/dcmdata/dcpixel.h> |
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74 #include <dcmtk/dcmdata/dcuid.h> |
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75 #include <dcmtk/dcmdata/dcxfer.h> |
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76 |
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77 #include <dcmtk/dcmdata/dcvrae.h> |
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78 #include <dcmtk/dcmdata/dcvras.h> |
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79 #include <dcmtk/dcmdata/dcvrat.h> |
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80 #include <dcmtk/dcmdata/dcvrcs.h> |
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81 #include <dcmtk/dcmdata/dcvrda.h> |
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82 #include <dcmtk/dcmdata/dcvrds.h> |
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83 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 84 #include <dcmtk/dcmdata/dcvrfd.h> |
85 #include <dcmtk/dcmdata/dcvrfl.h> | |
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86 #include <dcmtk/dcmdata/dcvris.h> |
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87 #include <dcmtk/dcmdata/dcvrlo.h> |
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88 #include <dcmtk/dcmdata/dcvrlt.h> |
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89 #include <dcmtk/dcmdata/dcvrpn.h> |
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90 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 91 #include <dcmtk/dcmdata/dcvrsl.h> |
92 #include <dcmtk/dcmdata/dcvrss.h> | |
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93 #include <dcmtk/dcmdata/dcvrst.h> |
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94 #include <dcmtk/dcmdata/dcvrtm.h> |
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95 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 96 #include <dcmtk/dcmdata/dcvrul.h> |
97 #include <dcmtk/dcmdata/dcvrus.h> | |
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98 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 99 |
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100 #if DCMTK_VERSION_NUMBER >= 361 |
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101 # include <dcmtk/dcmdata/dcvruc.h> |
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102 # include <dcmtk/dcmdata/dcvrur.h> |
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103 #endif |
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104 |
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105 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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106 # include <EmbeddedResources.h> |
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107 #endif |
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108 |
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109 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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110 # include <dcmtk/dcmjpeg/djdecode.h> |
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111 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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112 # include <dcmtk/dcmjpeg/djencode.h> |
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113 # endif |
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114 #endif |
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115 |
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116 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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117 # include <dcmtk/dcmjpls/djdecode.h> |
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118 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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119 # include <dcmtk/dcmjpls/djencode.h> |
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120 # endif |
1930 | 121 #endif |
122 | |
123 | |
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124 #include <dcmtk/dcmdata/dcrledrg.h> |
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125 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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126 # include <dcmtk/dcmdata/dcrleerg.h> |
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127 # include <dcmtk/dcmimage/diregist.h> // include to support color images |
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128 #endif |
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129 |
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130 |
62 | 131 namespace Orthanc |
0 | 132 { |
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133 static bool IsBinaryTag(const DcmTag& key) |
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134 { |
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135 return (key.isUnknownVR() || |
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136 key.getEVR() == EVR_OB || |
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137 key.getEVR() == EVR_OW || |
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138 key.getEVR() == EVR_UN || |
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139 key.getEVR() == EVR_ox); |
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140 } |
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141 |
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142 |
1656 | 143 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
144 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
145 EmbeddedResources::FileResourceId resource) | |
146 { | |
2017 | 147 std::string content; |
148 EmbeddedResources::GetFileResource(content, resource); | |
1656 | 149 |
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150 #if ORTHANC_SANDBOXED == 0 |
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151 TemporaryFile tmp; |
2017 | 152 tmp.Write(content); |
1656 | 153 |
154 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
155 { | |
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156 throw OrthancException(ErrorCode_InternalError, |
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157 "Cannot read embedded dictionary. Under Windows, make sure that " |
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158 "your TEMP directory does not contain special characters."); |
1656 | 159 } |
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160 #else |
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161 if (!dictionary.loadFromMemory(content)) |
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162 { |
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163 throw OrthancException(ErrorCode_InternalError, |
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164 "Cannot read embedded dictionary. Under Windows, make sure that " |
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165 "your TEMP directory does not contain special characters."); |
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166 } |
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167 #endif |
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169 #endif | |
170 | |
171 | |
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172 namespace |
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173 { |
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174 class DictionaryLocker |
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175 { |
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176 private: |
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177 DcmDataDictionary& dictionary_; |
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178 |
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179 public: |
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180 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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181 { |
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182 } |
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183 |
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184 ~DictionaryLocker() |
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185 { |
3117 | 186 #if DCMTK_VERSION_NUMBER >= 364 |
187 dcmDataDict.wrunlock(); | |
188 #else | |
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189 dcmDataDict.unlock(); |
3117 | 190 #endif |
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191 } |
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192 |
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193 DcmDataDictionary& operator*() |
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194 { |
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195 return dictionary_; |
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196 } |
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197 |
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198 DcmDataDictionary* operator->() |
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199 { |
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200 return &dictionary_; |
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201 } |
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202 }; |
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203 |
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204 |
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205 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter) \ |
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206 \ |
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207 struct converter \ |
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208 { \ |
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209 typedef cType CType; \ |
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210 \ |
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211 static bool Apply(CType& result, \ |
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212 DcmElement& element, \ |
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213 size_t i) \ |
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214 { \ |
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215 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \ |
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216 } \ |
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217 }; |
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218 |
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219 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32) |
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220 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16) |
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221 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32) |
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222 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16) |
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223 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32) |
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224 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64) |
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225 |
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226 |
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227 template <typename F> |
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228 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element) |
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229 { |
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230 F f; |
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231 typename F::CType value; |
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232 |
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233 if (element.getLength() > sizeof(typename F::CType) |
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234 && (element.getLength() % sizeof(typename F::CType)) == 0) |
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235 { |
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236 size_t count = element.getLength() / sizeof(typename F::CType); |
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237 std::vector<std::string> strings; |
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238 for (size_t i = 0; i < count; i++) { |
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239 if (f.Apply(value, element, i)) { |
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240 strings.push_back(boost::lexical_cast<std::string>(value)); |
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241 } |
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242 } |
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243 return new DicomValue(boost::algorithm::join(strings, "\\"), false); |
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244 } |
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245 else if (f.Apply(value, element, 0)) { |
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246 return new DicomValue(boost::lexical_cast<std::string>(value), false); |
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247 } |
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248 else { |
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249 return new DicomValue; |
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250 } |
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251 } |
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252 |
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253 } |
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254 |
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255 |
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256 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 257 { |
2296 | 258 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER; |
259 | |
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260 { |
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261 DictionaryLocker locker; |
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262 |
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263 locker->clear(); |
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265 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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266 LOG(INFO) << "Loading the embedded dictionaries"; |
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267 /** |
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268 * Do not load DICONDE dictionary, it breaks the other tags. The |
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269 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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270 * dictionary is not loaded by storescu. |
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271 **/ |
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272 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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274 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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275 |
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276 if (loadPrivateDictionary) |
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277 { |
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278 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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279 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
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280 } |
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281 else |
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282 { |
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283 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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284 } |
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286 #else |
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287 std::vector<std::string> dictionaries; |
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288 |
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289 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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290 if (env != NULL) |
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291 { |
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292 // This mimics the behavior of DCMTK: |
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293 // https://support.dcmtk.org/docs/file_envvars.html |
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294 #if defined(_WIN32) |
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295 Toolbox::TokenizeString(dictionaries, std::string(env), ';'); |
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296 #else |
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297 Toolbox::TokenizeString(dictionaries, std::string(env), ':'); |
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298 #endif |
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299 } |
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300 else |
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301 { |
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302 boost::filesystem::path base = DCMTK_DICTIONARY_DIR; |
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303 dictionaries.push_back((base / "dicom.dic").string()); |
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304 dictionaries.push_back((base / "private.dic").string()); |
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305 } |
1656 | 306 |
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307 for (size_t i = 0; i < dictionaries.size(); i++) |
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308 { |
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309 LOG(WARNING) << "Loading external DICOM dictionary: \"" << dictionaries[i] << "\""; |
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310 |
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311 if (!locker->loadDictionary(dictionaries[i].c_str())) |
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312 { |
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313 throw OrthancException(ErrorCode_InexistentFile); |
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314 } |
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315 } |
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316 |
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318 } |
1656 | 319 |
320 /* make sure data dictionary is loaded */ | |
321 if (!dcmDataDict.isDictionaryLoaded()) | |
322 { | |
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323 throw OrthancException(ErrorCode_InternalError, |
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324 "No DICOM dictionary loaded, check environment variable: " + |
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325 std::string(DCM_DICT_ENVIRONMENT_VARIABLE)); |
1656 | 326 } |
327 | |
328 { | |
329 // Test the dictionary with a simple DICOM tag | |
330 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
331 if (key.getEVR() != EVR_DS) | |
332 { | |
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333 throw OrthancException(ErrorCode_InternalError, |
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334 "The DICOM dictionary has not been correctly read"); |
1656 | 335 } |
336 } | |
337 } | |
338 | |
339 | |
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340 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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341 ValueRepresentation vr, |
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342 const std::string& name, |
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343 unsigned int minMultiplicity, |
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344 unsigned int maxMultiplicity, |
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345 const std::string& privateCreator) |
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346 { |
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347 if (minMultiplicity < 1) |
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348 { |
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349 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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350 } |
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351 |
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352 bool arbitrary = false; |
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353 if (maxMultiplicity == 0) |
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354 { |
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355 maxMultiplicity = DcmVariableVM; |
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356 arbitrary = true; |
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357 } |
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358 else if (maxMultiplicity < minMultiplicity) |
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359 { |
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360 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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361 } |
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362 |
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363 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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364 |
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365 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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366 << name << " (multiplicity: " << minMultiplicity << "-" |
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367 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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368 |
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369 std::unique_ptr<DcmDictEntry> entry; |
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370 if (privateCreator.empty()) |
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371 { |
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372 if (tag.GetGroup() % 2 == 1) |
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373 { |
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374 char buf[128]; |
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375 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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376 "but no private creator was associated with it", |
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377 tag.GetGroup(), tag.GetElement()); |
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378 LOG(WARNING) << buf; |
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379 } |
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380 |
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381 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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382 tag.GetElement(), |
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383 evr, name.c_str(), |
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384 static_cast<int>(minMultiplicity), |
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385 static_cast<int>(maxMultiplicity), |
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386 NULL /* version */, |
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387 OFTrue /* doCopyString */, |
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388 NULL /* private creator */)); |
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389 } |
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390 else |
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391 { |
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392 // "Private Data Elements have an odd Group Number that is not |
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393 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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394 // (FFFF,eeee)." |
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395 if (tag.GetGroup() % 2 == 0 /* even */ || |
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396 tag.GetGroup() == 0x0001 || |
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397 tag.GetGroup() == 0x0003 || |
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398 tag.GetGroup() == 0x0005 || |
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399 tag.GetGroup() == 0x0007 || |
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400 tag.GetGroup() == 0xffff) |
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401 { |
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402 char buf[128]; |
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403 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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404 tag.GetGroup(), tag.GetElement()); |
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405 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf)); |
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406 } |
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407 |
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408 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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409 tag.GetElement(), |
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410 evr, name.c_str(), |
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411 static_cast<int>(minMultiplicity), |
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412 static_cast<int>(maxMultiplicity), |
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413 "private" /* version */, |
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414 OFTrue /* doCopyString */, |
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415 privateCreator.c_str())); |
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416 } |
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417 |
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418 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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419 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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420 |
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421 { |
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422 DictionaryLocker locker; |
2116
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423 |
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424 if (locker->findEntry(name.c_str())) |
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425 { |
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426 throw OrthancException(ErrorCode_AlreadyExistingTag, |
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427 "Cannot register two tags with the same symbolic name \"" + name + "\""); |
2116
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428 } |
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429 |
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430 locker->addEntry(entry.release()); |
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431 } |
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432 } |
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433 |
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434 |
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435 Encoding FromDcmtkBridge::DetectEncoding(bool& hasCodeExtensions, |
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436 DcmItem& dataset, |
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437 Encoding defaultEncoding) |
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438 { |
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439 // http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2 |
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440 |
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441 OFString tmp; |
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442 if (dataset.findAndGetOFStringArray(DCM_SpecificCharacterSet, tmp).good()) |
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443 { |
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444 std::vector<std::string> tokens; |
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445 Toolbox::TokenizeString(tokens, std::string(tmp.c_str()), '\\'); |
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446 |
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447 hasCodeExtensions = (tokens.size() > 1); |
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448 |
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449 for (size_t i = 0; i < tokens.size(); i++) |
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450 { |
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451 std::string characterSet = Toolbox::StripSpaces(tokens[i]); |
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452 |
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453 if (!characterSet.empty()) |
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454 { |
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455 Encoding encoding; |
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456 |
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457 if (GetDicomEncoding(encoding, characterSet.c_str())) |
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458 { |
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459 // The specific character set is supported by the Orthanc core |
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460 return encoding; |
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|
461 } |
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462 else |
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463 { |
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|
464 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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465 << ", fallback to ASCII (remove all special characters)"; |
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|
466 return Encoding_Ascii; |
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467 } |
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468 } |
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469 } |
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470 } |
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|
471 else |
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472 { |
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473 hasCodeExtensions = false; |
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474 } |
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|
475 |
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|
476 // No specific character set tag: Use the default encoding |
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477 return defaultEncoding; |
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478 } |
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479 |
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480 |
2125 | 481 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
482 DcmItem& dataset, | |
483 unsigned int maxStringLength, | |
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484 Encoding defaultEncoding, |
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diff
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|
485 const std::set<DicomTag>& ignoreTagLength) |
0 | 486 { |
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|
487 bool hasCodeExtensions; |
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488 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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|
489 |
0 | 490 target.Clear(); |
491 for (unsigned long i = 0; i < dataset.card(); i++) | |
492 { | |
493 DcmElement* element = dataset.getElement(i); | |
494 if (element && element->isLeaf()) | |
495 { | |
3651
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|
496 target.SetValueInternal(element->getTag().getGTag(), |
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497 element->getTag().getETag(), |
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|
498 ConvertLeafElement(*element, DicomToJsonFlags_Default, |
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|
499 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength)); |
0 | 500 } |
501 } | |
502 } | |
503 | |
504 | |
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diff
changeset
|
505 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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diff
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|
506 { |
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diff
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|
507 return DicomTag(tag.getGTag(), tag.getETag()); |
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diff
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|
508 } |
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957
diff
changeset
|
509 |
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957
diff
changeset
|
510 |
0 | 511 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
512 { | |
513 return DicomTag(element.getGTag(), element.getETag()); | |
514 } | |
515 | |
516 | |
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|
517 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
1736
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ToJson: IncludePrivateTags and IncludeUnknownTags
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diff
changeset
|
518 DicomToJsonFlags flags, |
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diff
changeset
|
519 unsigned int maxStringLength, |
2409
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diff
changeset
|
520 Encoding encoding, |
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521 bool hasCodeExtensions, |
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|
522 const std::set<DicomTag>& ignoreTagLength) |
0 | 523 { |
524 if (!element.isLeaf()) | |
525 { | |
1582
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encoding of exceptions
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diff
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|
526 // This function is only applicable to leaf elements |
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|
527 throw OrthancException(ErrorCode_BadParameterType); |
0 | 528 } |
529 | |
1818
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ParsedDicomFile::CreateFromJson
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diff
changeset
|
530 char *c = NULL; |
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ParsedDicomFile::CreateFromJson
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|
531 if (element.isaString() && |
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ParsedDicomFile::CreateFromJson
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|
532 element.getString(c).good()) |
0 | 533 { |
1818
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ParsedDicomFile::CreateFromJson
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534 if (c == NULL) // This case corresponds to the empty string |
0 | 535 { |
1818
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ParsedDicomFile::CreateFromJson
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536 return new DicomValue("", false); |
0 | 537 } |
538 else | |
539 { | |
1818
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|
540 std::string s(c); |
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|
541 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
1854
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prevent too long tags to be inserted
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1831
diff
changeset
|
542 |
1929
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ORTHANC_MAXIMUM_TAG_LENGTH made explicit
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diff
changeset
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543 if (maxStringLength != 0 && |
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544 utf8.size() > maxStringLength && |
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545 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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546 { |
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547 return new DicomValue; // Too long, create a NULL value |
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548 } |
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549 else |
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550 { |
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551 return new DicomValue(utf8, false); |
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552 } |
0 | 553 } |
554 } | |
555 | |
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556 |
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557 if (element.getVR() == EVR_UN) |
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558 { |
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559 // Unknown value representation: Lookup in the dictionary. This |
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560 // is notably the case for private tags registered with the |
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561 // "Dictionary" configuration option. |
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562 DictionaryLocker locker; |
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563 |
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564 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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565 element.getTag().getPrivateCreator()); |
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566 if (entry != NULL && |
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567 entry->getVR().isaString()) |
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568 { |
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569 Uint8* data = NULL; |
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570 |
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571 // At (*), we do not try and convert to UTF-8, as nothing says |
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572 // the encoding of the private tag is the same as that of the |
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573 // remaining of the DICOM dataset. Only go for ASCII strings. |
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574 |
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575 if (element.getUint8Array(data) == EC_Normal && |
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576 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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577 { |
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578 if (data == NULL) |
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579 { |
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580 return new DicomValue("", false); // Empty string |
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581 } |
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582 else if (maxStringLength != 0 && |
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583 element.getLength() > maxStringLength && |
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584 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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585 { |
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586 return new DicomValue; // Too long, create a NULL value |
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587 } |
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588 else |
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589 { |
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590 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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591 return new DicomValue(s, false); |
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592 } |
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593 } |
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594 } |
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595 } |
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596 |
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597 |
0 | 598 try |
599 { | |
600 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
601 switch (element.getVR()) | |
602 { | |
603 | |
604 /** | |
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605 * Deal with binary data (including PixelData). |
0 | 606 **/ |
306
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607 |
302
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608 case EVR_OB: // other byte |
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609 case EVR_OF: // other float |
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610 case EVR_OW: // other word |
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611 case EVR_UN: // unknown value representation |
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612 case EVR_ox: // OB or OW depending on context |
306
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613 case EVR_DS: // decimal string |
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614 case EVR_IS: // integer string |
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615 case EVR_AS: // age string |
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616 case EVR_DA: // date string |
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617 case EVR_DT: // date time string |
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618 case EVR_TM: // time string |
302
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619 case EVR_AE: // application entity title |
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620 case EVR_CS: // code string |
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621 case EVR_SH: // short string |
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622 case EVR_LO: // long string |
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623 case EVR_ST: // short text |
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624 case EVR_LT: // long text |
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625 case EVR_UT: // unlimited text |
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626 case EVR_PN: // person name |
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627 case EVR_UI: // unique identifier |
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628 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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629 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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630 { |
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631 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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632 { |
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633 Uint8* data = NULL; |
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634 if (element.getUint8Array(data) == EC_Normal) |
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635 { |
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636 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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637 } |
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638 } |
0 | 639 |
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640 return new DicomValue; |
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641 } |
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642 |
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643 /** |
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644 * Numeric types |
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645 **/ |
0 | 646 |
302
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647 case EVR_SL: // signed long |
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648 { |
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649 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element); |
302
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650 } |
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651 |
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652 case EVR_SS: // signed short |
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653 { |
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654 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element); |
302
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655 } |
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656 |
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657 case EVR_UL: // unsigned long |
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658 { |
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659 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element); |
302
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660 } |
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661 |
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662 case EVR_US: // unsigned short |
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663 { |
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664 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element); |
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665 } |
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666 |
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667 case EVR_FL: // float single-precision |
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668 { |
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669 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element); |
302
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670 } |
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671 |
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672 case EVR_FD: // float double-precision |
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673 { |
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674 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element); |
1131 | 675 } |
676 | |
677 | |
678 /** | |
679 * Attribute tag. | |
680 **/ | |
681 | |
682 case EVR_AT: | |
683 { | |
1147 | 684 DcmTagKey tag; |
685 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
686 { | |
687 DicomTag t(tag.getGroup(), tag.getElement()); | |
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688 return new DicomValue(t.Format(), false); |
1147 | 689 } |
1131 | 690 else |
1147 | 691 { |
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692 return new DicomValue; |
1147 | 693 } |
302
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694 } |
0 | 695 |
696 | |
697 /** | |
302
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698 * Sequence types, should never occur at this point because of |
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699 * "element.isLeaf()". |
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700 **/ |
0 | 701 |
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702 case EVR_SQ: // sequence of items |
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703 return new DicomValue; |
0 | 704 |
705 | |
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706 /** |
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707 * Internal to DCMTK. |
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708 **/ |
0 | 709 |
302
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710 case EVR_xs: // SS or US depending on context |
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711 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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712 case EVR_na: // na="not applicable", for data which has no VR |
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713 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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714 case EVR_item: // used internally for items |
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715 case EVR_metainfo: // used internally for meta info datasets |
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716 case EVR_dataset: // used internally for datasets |
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717 case EVR_fileFormat: // used internally for DICOM files |
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718 case EVR_dicomDir: // used internally for DICOMDIR objects |
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719 case EVR_dirRecord: // used internally for DICOMDIR records |
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720 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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721 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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722 case EVR_PixelData: // used internally for uncompressed pixeld data |
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723 case EVR_OverlayData: // used internally for overlay data |
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724 return new DicomValue; |
0 | 725 |
726 | |
302
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727 /** |
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728 * Default case. |
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729 **/ |
0 | 730 |
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731 default: |
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732 return new DicomValue; |
0 | 733 } |
734 } | |
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735 catch (boost::bad_lexical_cast&) |
0 | 736 { |
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737 return new DicomValue; |
0 | 738 } |
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739 catch (std::bad_cast&) |
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740 { |
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741 return new DicomValue; |
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742 } |
0 | 743 } |
744 | |
745 | |
1687 | 746 static Json::Value& PrepareNode(Json::Value& parent, |
747 DcmElement& element, | |
748 DicomToJsonFormat format) | |
0 | 749 { |
1687 | 750 assert(parent.type() == Json::objectValue); |
0 | 751 |
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752 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
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753 const std::string formattedTag = tag.Format(); |
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754 |
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755 if (format == DicomToJsonFormat_Short) |
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756 { |
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757 parent[formattedTag] = Json::nullValue; |
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758 return parent[formattedTag]; |
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759 } |
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760 |
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761 // This code gives access to the name of the private tags |
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diff
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762 std::string tagName = FromDcmtkBridge::GetTagName(element); |
1688
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763 |
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764 switch (format) |
0 | 765 { |
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766 case DicomToJsonFormat_Human: |
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767 parent[tagName] = Json::nullValue; |
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768 return parent[tagName]; |
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769 |
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770 case DicomToJsonFormat_Full: |
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771 { |
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772 parent[formattedTag] = Json::objectValue; |
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773 Json::Value& node = parent[formattedTag]; |
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774 |
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775 if (element.isLeaf()) |
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776 { |
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777 node["Name"] = tagName; |
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778 |
2076 | 779 if (element.getTag().getPrivateCreator() != NULL) |
1688
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780 { |
2076 | 781 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
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782 } |
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783 |
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784 return node; |
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785 } |
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786 else |
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787 { |
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788 node["Name"] = tagName; |
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789 node["Type"] = "Sequence"; |
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790 node["Value"] = Json::nullValue; |
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791 return node["Value"]; |
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792 } |
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793 } |
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794 |
1688
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795 default: |
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796 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 797 } |
798 } | |
799 | |
800 | |
801 static void LeafValueToJson(Json::Value& target, | |
802 const DicomValue& value, | |
803 DicomToJsonFormat format, | |
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804 DicomToJsonFlags flags, |
1688
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805 unsigned int maxStringLength) |
1687 | 806 { |
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807 Json::Value* targetValue = NULL; |
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808 Json::Value* targetType = NULL; |
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809 |
1688
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|
810 switch (format) |
1687 | 811 { |
1688
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|
812 case DicomToJsonFormat_Short: |
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|
813 case DicomToJsonFormat_Human: |
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814 { |
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815 assert(target.type() == Json::nullValue); |
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816 targetValue = ⌖ |
1688
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|
817 break; |
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818 } |
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819 |
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|
820 case DicomToJsonFormat_Full: |
0 | 821 { |
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822 assert(target.type() == Json::objectValue); |
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|
823 target["Value"] = Json::nullValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
824 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
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diff
changeset
|
825 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
826 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
827 break; |
0 | 828 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
829 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
830 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
831 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 832 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
833 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
834 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
835 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
836 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
837 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
838 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
839 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
840 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
841 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
842 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
843 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
844 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
845 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
846 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
847 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
848 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
849 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
850 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
851 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
852 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
853 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
854 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
855 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
856 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
857 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
858 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
859 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
860 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
861 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
862 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
863 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
864 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
865 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
866 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
867 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
868 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
869 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
870 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
871 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
872 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
873 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
874 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
875 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
876 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
877 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
878 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
879 } |
1687 | 880 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
881 |
1687 | 882 |
2126 | 883 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
884 DcmElement& element, | |
885 DicomToJsonFormat format, | |
886 DicomToJsonFlags flags, | |
887 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
888 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
889 bool hasCodeExtensions, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
890 const std::set<DicomTag>& ignoreTagLength) |
1687 | 891 { |
1691 | 892 if (parent.type() == Json::nullValue) |
893 { | |
894 parent = Json::objectValue; | |
895 } | |
896 | |
897 assert(parent.type() == Json::objectValue); | |
1687 | 898 Json::Value& target = PrepareNode(parent, element, format); |
899 | |
900 if (element.isLeaf()) | |
901 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
902 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
903 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
904 (element, flags, 0, encoding, hasCodeExtensions, ignoreTagLength)); |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
905 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
906 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
907 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
908 LeafValueToJson(target, *v, format, flags, maxStringLength); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
909 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
910 else |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
911 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
912 LeafValueToJson(target, *v, format, flags, 0); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
913 } |
0 | 914 } |
915 else | |
916 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
917 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
918 target = Json::arrayValue; |
0 | 919 |
920 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
921 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 922 // etc. are not." The following dynamic_cast is thus OK. |
0 | 923 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
924 | |
925 for (unsigned long i = 0; i < sequence.card(); i++) | |
926 { | |
927 DcmItem* child = sequence.getItem(i); | |
1687 | 928 Json::Value& v = target.append(Json::objectValue); |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
929 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength); |
1687 | 930 } |
0 | 931 } |
932 } | |
933 | |
934 | |
2126 | 935 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
936 DcmItem& item, | |
937 DicomToJsonFormat format, | |
938 DicomToJsonFlags flags, | |
939 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
940 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
941 bool hasCodeExtensions, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
942 const std::set<DicomTag>& ignoreTagLength) |
1686 | 943 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
944 assert(parent.type() == Json::objectValue); |
1686 | 945 |
946 for (unsigned long i = 0; i < item.card(); i++) | |
947 { | |
948 DcmElement* element = item.getElement(i); | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
949 if (element == NULL) |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
950 { |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
951 throw OrthancException(ErrorCode_InternalError); |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
952 } |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
953 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
954 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
955 |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
956 /*element->getTag().isPrivate()*/ |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
957 if (tag.IsPrivate() && |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
958 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
959 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
960 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
961 } |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
962 |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
963 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
964 { |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
965 DictionaryLocker locker; |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
966 if (locker->findEntry(element->getTag(), element->getTag().getPrivateCreator()) == NULL) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
967 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
968 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
969 } |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
970 } |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
971 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
972 if (IsBinaryTag(element->getTag())) |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
973 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
974 // This is a binary tag |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
975 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
df331354cea2
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976 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
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977 { |
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978 continue; |
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979 } |
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980 } |
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981 |
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982 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, |
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983 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength); |
1686 | 984 } |
985 } | |
986 | |
987 | |
2126 | 988 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
989 DcmDataset& dataset, | |
990 DicomToJsonFormat format, | |
991 DicomToJsonFlags flags, | |
2131 | 992 unsigned int maxStringLength, |
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993 Encoding defaultEncoding, |
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994 const std::set<DicomTag>& ignoreTagLength) |
0 | 995 { |
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996 bool hasCodeExtensions; |
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997 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
2126 | 998 |
1688
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999 target = Json::objectValue; |
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1000 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength); |
0 | 1001 } |
1002 | |
1003 | |
2126 | 1004 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
1005 DcmMetaInfo& dataset, | |
1006 DicomToJsonFormat format, | |
1007 DicomToJsonFlags flags, | |
1008 unsigned int maxStringLength) | |
1831
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1009 { |
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1010 std::set<DicomTag> ignoreTagLength; |
1831
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1011 target = Json::objectValue; |
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1012 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, false, ignoreTagLength); |
1831
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1013 } |
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1014 |
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1015 |
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1016 |
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1017 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 1018 { |
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1019 { |
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1020 // Some patches for important tags because of different DICOM |
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1021 // dictionaries between DCMTK versions |
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1022 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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1023 std::string n = tmp.GetMainTagsName(); |
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1024 if (n.size() != 0) |
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1025 { |
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1026 return n; |
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1027 } |
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1028 // End of patches |
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1029 } |
106 | 1030 |
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1031 #if 0 |
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1032 // This version explicitly calls the dictionary |
0 | 1033 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1034 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
1035 | |
306
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1036 std::string s(DcmTag_ERROR_TagName); |
0 | 1037 if (entry != NULL) |
1038 { | |
1039 s = std::string(entry->getTagName()); | |
1040 } | |
1041 | |
1042 dcmDataDict.unlock(); | |
1043 return s; | |
305
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1044 #else |
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1045 const char* name = tag.getTagName(); |
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1046 if (name == NULL) |
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1047 { |
306
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1048 return DcmTag_ERROR_TagName; |
305
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1049 } |
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1050 else |
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1051 { |
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1052 return std::string(name); |
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1053 } |
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1054 #endif |
0 | 1055 } |
1056 | |
1057 | |
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1058 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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1059 const std::string& privateCreator) |
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1060 { |
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1061 DcmTag tag(t.GetGroup(), t.GetElement()); |
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1062 |
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1063 if (!privateCreator.empty()) |
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1064 { |
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1065 tag.setPrivateCreator(privateCreator.c_str()); |
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1066 } |
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1067 |
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1068 return GetTagNameInternal(tag); |
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1069 } |
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1070 |
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1071 |
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1072 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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1073 { |
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1074 // Copy the tag to ensure const-correctness of DcmElement. Note |
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1075 // that the private creator information is also copied. |
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1076 DcmTag tag(element.getTag()); |
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1077 |
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1078 return GetTagNameInternal(tag); |
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1079 } |
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1080 |
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1081 |
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1082 |
304 | 1083 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 1084 { |
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1085 DicomTag parsed(0, 0); |
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1086 if (DicomTag::ParseHexadecimal(parsed, name)) |
304 | 1087 { |
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1088 return parsed; |
1861
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1089 } |
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1090 |
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1091 #if 0 |
0 | 1092 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1093 const DcmDictEntry* entry = dict.findEntry(name); | |
1094 | |
1095 if (entry == NULL) | |
1096 { | |
1097 dcmDataDict.unlock(); | |
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1098 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1099 } |
1100 else | |
1101 { | |
1102 DcmTagKey key = entry->getKey(); | |
1103 DicomTag tag(key.getGroup(), key.getElement()); | |
1104 dcmDataDict.unlock(); | |
1105 return tag; | |
1106 } | |
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1107 #else |
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1108 DcmTag tag; |
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1109 if (DcmTag::findTagFromName(name, tag).good()) |
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1110 { |
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1111 return DicomTag(tag.getGTag(), tag.getETag()); |
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1112 } |
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1113 else |
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1114 { |
2470 | 1115 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\""; |
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1116 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1117 } |
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1118 #endif |
0 | 1119 } |
1120 | |
1121 | |
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1122 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1123 { |
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1124 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1125 return tmp.isUnknownVR(); |
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1126 } |
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1127 |
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1128 |
0 | 1129 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1130 const DicomMap& values, |
1131 bool simplify) | |
0 | 1132 { |
1133 if (result.type() != Json::objectValue) | |
1134 { | |
62 | 1135 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1136 } |
1137 | |
1138 result.clear(); | |
1139 | |
3651
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|
1140 for (DicomMap::Content::const_iterator |
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
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diff
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|
1141 it = values.content_.begin(); it != values.content_.end(); ++it) |
0 | 1142 { |
2115
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Handling of private tags/creators in the "Dictionary" configuration option
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diff
changeset
|
1143 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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Handling of private tags/creators in the "Dictionary" configuration option
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parents:
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diff
changeset
|
1144 const std::string tagName = GetTagName(it->first, ""); |
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diff
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|
1145 |
1368 | 1146 if (simplify) |
1147 { | |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1148 if (it->second->IsNull()) |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1149 { |
2115
a657f7772e69
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diff
changeset
|
1150 result[tagName] = Json::nullValue; |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1151 } |
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removal of DicomStringValue and DicomNullValue
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changeset
|
1152 else |
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removal of DicomStringValue and DicomNullValue
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diff
changeset
|
1153 { |
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removal of DicomStringValue and DicomNullValue
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diff
changeset
|
1154 // TODO IsBinary |
2115
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1155 result[tagName] = it->second->GetContent(); |
1737
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removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1156 } |
1368 | 1157 } |
1158 else | |
1159 { | |
1160 Json::Value value = Json::objectValue; | |
1161 | |
2115
a657f7772e69
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diff
changeset
|
1162 value["Name"] = tagName; |
1368 | 1163 |
1164 if (it->second->IsNull()) | |
1165 { | |
1166 value["Type"] = "Null"; | |
1167 value["Value"] = Json::nullValue; | |
1168 } | |
1169 else | |
1170 { | |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1171 // TODO IsBinary |
1368 | 1172 value["Type"] = "String"; |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
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1736
diff
changeset
|
1173 value["Value"] = it->second->GetContent(); |
1368 | 1174 } |
1175 | |
1176 result[it->first.Format()] = value; | |
1177 } | |
0 | 1178 } |
1179 } | |
176 | 1180 |
1181 | |
788 | 1182 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1183 { |
1184 char uid[100]; | |
1185 | |
1186 switch (level) | |
1187 { | |
788 | 1188 case ResourceType_Patient: |
311 | 1189 // The "PatientID" field is of type LO (Long String), 64 |
1190 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1191 // as a random PatientID. | |
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
1192 return Toolbox::GenerateUuid(); |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
1193 |
788 | 1194 case ResourceType_Instance: |
302
238134081136
modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
1195 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1196 |
788 | 1197 case ResourceType_Series: |
302
238134081136
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291
diff
changeset
|
1198 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1199 |
788 | 1200 case ResourceType_Study: |
302
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291
diff
changeset
|
1201 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1202 |
302
238134081136
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291
diff
changeset
|
1203 default: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
1204 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1205 } |
1206 } | |
1207 | |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1208 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1209 |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1210 static bool SaveToMemoryBufferInternal(std::string& buffer, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1211 DcmFileFormat& dicom, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1212 E_TransferSyntax xfer) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1213 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1214 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1215 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1216 // Create a memory buffer with the proper size |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1217 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1218 const uint32_t estimatedSize = dicom.calcElementLength(xfer, encodingType); // (*) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1219 buffer.resize(estimatedSize); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1220 } |
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transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1221 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1222 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1223 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1224 // Fill the memory buffer with the meta-header and the dataset |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1225 dicom.transferInit(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1226 OFCondition c = dicom.write(ob, xfer, encodingType, NULL, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1227 /*opt_groupLength*/ EGL_recalcGL, |
3765
4a25727401cd
first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3748
diff
changeset
|
1228 /*opt_paddingType*/ EPD_noChange, |
4a25727401cd
first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3748
diff
changeset
|
1229 /*padlen*/ 0, /*subPadlen*/ 0, /*instanceLength*/ 0, |
4a25727401cd
first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3748
diff
changeset
|
1230 EWM_updateMeta /* creates new SOP instance UID on lossy */); |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1231 dicom.transferEnd(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1232 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1233 if (c.good()) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1234 { |
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transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1235 // The DICOM file is successfully written, truncate the target |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1236 // buffer if its size was overestimated by (*) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1237 ob.flush(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1238 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1239 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1240 if (effectiveSize < buffer.size()) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1241 { |
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transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1242 buffer.resize(effectiveSize); |
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transcoding to uncompressed transfer syntaxes
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parents:
3743
diff
changeset
|
1243 } |
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transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1244 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1245 return true; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1246 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1247 else |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1248 { |
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transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1249 // Error |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1250 buffer.clear(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1251 return false; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1252 } |
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transcoding to uncompressed transfer syntaxes
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parents:
3743
diff
changeset
|
1253 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1254 |
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transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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3743
diff
changeset
|
1255 |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1256 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1257 DcmDataset& dataSet) |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1258 { |
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embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
1259 // Determine the transfer syntax which shall be used to write the |
3811
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1260 // information to the file. If not possible, switch to the Little |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
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3772
diff
changeset
|
1261 // Endian syntax, with explicit length. |
291
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diff
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|
1262 |
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diff
changeset
|
1263 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
661
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changeset
|
1264 |
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diff
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1265 |
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diff
changeset
|
1266 /** |
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diff
changeset
|
1267 * Note that up to Orthanc 0.7.1 (inclusive), the |
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diff
changeset
|
1268 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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diff
changeset
|
1269 * dataset into memory. We now keep the original transfer syntax |
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diff
changeset
|
1270 * (if available). |
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diff
changeset
|
1271 **/ |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1272 E_TransferSyntax xfer = dataSet.getCurrentXfer(); |
661
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diff
changeset
|
1273 if (xfer == EXS_Unknown) |
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diff
changeset
|
1274 { |
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diff
changeset
|
1275 // No information about the original transfer syntax: This is |
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diff
changeset
|
1276 // most probably a DICOM dataset that was read from memory. |
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diff
changeset
|
1277 xfer = EXS_LittleEndianExplicit; |
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changeset
|
1278 } |
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diff
changeset
|
1279 |
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diff
changeset
|
1280 // Create the meta-header information |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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991
diff
changeset
|
1281 DcmFileFormat ff(&dataSet); |
661
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diff
changeset
|
1282 ff.validateMetaInfo(xfer); |
1316
1c8dfedefefe
Fix anonymization generating non-portable DICOM files
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1307
diff
changeset
|
1283 ff.removeInvalidGroups(); |
291
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|
1284 |
3748
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transcoding to uncompressed transfer syntaxes
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diff
changeset
|
1285 return SaveToMemoryBufferInternal(buffer, ff, xfer); |
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transcoding to uncompressed transfer syntaxes
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changeset
|
1286 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1287 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1288 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1289 bool FromDcmtkBridge::Transcode(DcmFileFormat& dicom, |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1290 DicomTransferSyntax syntax, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1291 const DcmRepresentationParameter* representation) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1292 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1293 E_TransferSyntax xfer; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1294 if (!LookupDcmtkTransferSyntax(xfer, syntax)) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1295 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1296 throw OrthancException(ErrorCode_InternalError); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1297 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1298 else |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1299 { |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1300 DicomTransferSyntax sourceSyntax; |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1301 bool known = LookupOrthancTransferSyntax(sourceSyntax, dicom); |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1302 |
3811
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1303 if (!dicom.getDataset()->chooseRepresentation(xfer, representation).good() || |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1304 !dicom.getDataset()->canWriteXfer(xfer) || |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1305 !dicom.validateMetaInfo(xfer, EWM_updateMeta).good()) |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1306 { |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1307 return false; |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1308 } |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1309 else |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1310 { |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1311 dicom.removeInvalidGroups(); |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1312 |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1313 if (known) |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1314 { |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1315 LOG(INFO) << "Transcoded an image from transfer syntax " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1316 << GetTransferSyntaxUid(sourceSyntax) << " to " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1317 << GetTransferSyntaxUid(syntax); |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1318 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1319 else |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1320 { |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1321 LOG(INFO) << "Transcoded an image from unknown transfer syntax to " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1322 << GetTransferSyntaxUid(syntax); |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1323 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1324 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1325 return true; |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1326 } |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1327 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1328 } |
1360 | 1329 |
1330 | |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1331 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1332 { |
1333 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1334 return Convert(t.getEVR()); |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1335 } |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1336 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1337 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1338 { |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1339 switch (vr) |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1340 { |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1341 case EVR_AE: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1342 return ValueRepresentation_ApplicationEntity; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1343 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1344 case EVR_AS: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1345 return ValueRepresentation_AgeString; |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1346 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1347 case EVR_AT: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1348 return ValueRepresentation_AttributeTag; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1349 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1350 case EVR_CS: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1351 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1352 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1353 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1354 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1355 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1356 case EVR_DS: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1357 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1358 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1359 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1360 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1361 |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1362 case EVR_FL: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1363 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1364 |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1365 case EVR_FD: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1366 return ValueRepresentation_FloatingPointDouble; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1367 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1368 case EVR_IS: |
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parents:
1998
diff
changeset
|
1369 return ValueRepresentation_IntegerString; |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1370 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1371 case EVR_LO: |
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parents:
1998
diff
changeset
|
1372 return ValueRepresentation_LongString; |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1373 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1374 case EVR_LT: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1375 return ValueRepresentation_LongText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1376 |
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1998
diff
changeset
|
1377 case EVR_OB: |
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parents:
1998
diff
changeset
|
1378 return ValueRepresentation_OtherByte; |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1379 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1380 #if DCMTK_VERSION_NUMBER >= 361 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1381 case EVR_OD: |
7724ed267b5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1382 return ValueRepresentation_OtherDouble; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1383 #endif |
2006
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parents:
1998
diff
changeset
|
1384 |
6301bbcbcaed
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1998
diff
changeset
|
1385 case EVR_OF: |
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parents:
1998
diff
changeset
|
1386 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1387 |
3198
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1388 #if DCMTK_VERSION_NUMBER >= 362 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1389 case EVR_OL: |
7724ed267b5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1390 return ValueRepresentation_OtherLong; |
7724ed267b5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1391 #endif |
2006
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parents:
1998
diff
changeset
|
1392 |
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1998
diff
changeset
|
1393 case EVR_OW: |
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parents:
1998
diff
changeset
|
1394 return ValueRepresentation_OtherWord; |
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parents:
1998
diff
changeset
|
1395 |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1396 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1397 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
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parents:
1998
diff
changeset
|
1398 |
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parents:
1998
diff
changeset
|
1399 case EVR_SH: |
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parents:
1998
diff
changeset
|
1400 return ValueRepresentation_ShortString; |
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parents:
1998
diff
changeset
|
1401 |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1402 case EVR_SL: |
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parents:
1998
diff
changeset
|
1403 return ValueRepresentation_SignedLong; |
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parents:
1998
diff
changeset
|
1404 |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1405 case EVR_SQ: |
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parents:
1998
diff
changeset
|
1406 return ValueRepresentation_Sequence; |
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parents:
1998
diff
changeset
|
1407 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1408 case EVR_SS: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1409 return ValueRepresentation_SignedShort; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1410 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1411 case EVR_ST: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1412 return ValueRepresentation_ShortText; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1413 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1414 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1415 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1416 |
3199
9316f341e40f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1417 #if DCMTK_VERSION_NUMBER >= 361 |
3198
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1418 case EVR_UC: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
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|
1419 return ValueRepresentation_UnlimitedCharacters; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
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|
1420 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1421 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1422 case EVR_UI: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1423 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1424 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1425 case EVR_UL: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1426 return ValueRepresentation_UnsignedLong; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1427 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1428 case EVR_UN: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1429 return ValueRepresentation_Unknown; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1430 |
3199
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1431 #if DCMTK_VERSION_NUMBER >= 361 |
3198
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1432 case EVR_UR: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1433 return ValueRepresentation_UniversalResource; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1434 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1435 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1436 case EVR_US: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1437 return ValueRepresentation_UnsignedShort; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1438 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1439 case EVR_UT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1440 return ValueRepresentation_UnlimitedText; |
1792 | 1441 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1442 default: |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1443 return ValueRepresentation_NotSupported; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1444 } |
1360 | 1445 } |
1446 | |
1689 | 1447 |
3691
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1448 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1449 const std::string& privateCreator) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1450 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1451 if (tag.IsPrivate() && |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1452 privateCreator.empty()) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1453 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1454 // This solves issue 140 (Modifying private tags with REST API |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1455 // changes VR from LO to UN) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1456 // https://bitbucket.org/sjodogne/orthanc/issues/140 |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1457 LOG(WARNING) << "Private creator should not be empty while creating a private tag: " << tag.Format(); |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1458 } |
1689 | 1459 |
3692
fd302ec6a502
fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1460 #if DCMTK_VERSION_NUMBER >= 362 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1461 DcmTag key(tag.GetGroup(), tag.GetElement()); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1462 if (tag.IsPrivate()) |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1463 { |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1464 return DcmItem::newDicomElement(key, privateCreator.c_str()); |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1465 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1466 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1467 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1468 return DcmItem::newDicomElement(key, NULL); |
1689 | 1469 } |
3691
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1470 |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1471 #else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1472 DcmTag key(tag.GetGroup(), tag.GetElement()); |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1473 if (tag.IsPrivate()) |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1474 { |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1475 // https://forum.dcmtk.org/viewtopic.php?t=4527 |
3708 | 1476 LOG(WARNING) << "You are using DCMTK <= 3.6.1: All the private tags " |
3691
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1477 "are considered as having a binary value representation"; |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1478 key.setPrivateCreator(privateCreator.c_str()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1479 return new DcmOtherByteOtherWord(key); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1480 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1481 else |
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diff
changeset
|
1482 { |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1483 return newDicomElement(key); |
4922bdd046dd
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changeset
|
1484 } |
4922bdd046dd
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diff
changeset
|
1485 #endif |
1689 | 1486 } |
1487 | |
1488 | |
1489 | |
1490 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1695 | 1491 const std::string& utf8Value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1492 bool decodeDataUriScheme, |
1695 | 1493 Encoding dicomEncoding) |
1689 | 1494 { |
1495 std::string binary; | |
1695 | 1496 const std::string* decoded = &utf8Value; |
1689 | 1497 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1498 if (decodeDataUriScheme && |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2831
diff
changeset
|
1499 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
1689 | 1500 { |
1501 std::string mime; | |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1502 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1503 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1504 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1505 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1506 |
1695 | 1507 decoded = &binary; |
1508 } | |
1509 else if (dicomEncoding != Encoding_Utf8) | |
1510 { | |
1511 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1512 decoded = &binary; |
1513 } | |
1514 | |
3691
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diff
changeset
|
1515 if (IsBinaryTag(element.getTag())) |
1689 | 1516 { |
3199
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diff
changeset
|
1517 bool ok; |
9316f341e40f
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diff
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|
1518 |
3691
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diff
changeset
|
1519 switch (element.getTag().getEVR()) |
3199
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changeset
|
1520 { |
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changeset
|
1521 case EVR_OW: |
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diff
changeset
|
1522 if (decoded->size() % sizeof(Uint16) != 0) |
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parents:
3198
diff
changeset
|
1523 { |
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parents:
3198
diff
changeset
|
1524 LOG(ERROR) << "A tag with OW VR must have an even number of bytes"; |
9316f341e40f
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changeset
|
1525 ok = false; |
9316f341e40f
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changeset
|
1526 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1527 else |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1528 { |
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3198
diff
changeset
|
1529 ok = element.putUint16Array((const Uint16*) decoded->c_str(), decoded->size() / sizeof(Uint16)).good(); |
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changeset
|
1530 } |
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changeset
|
1531 |
9316f341e40f
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changeset
|
1532 break; |
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3198
diff
changeset
|
1533 |
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3198
diff
changeset
|
1534 default: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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3198
diff
changeset
|
1535 ok = element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1536 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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3198
diff
changeset
|
1537 } |
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changeset
|
1538 |
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unit testing json for dicomweb
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diff
changeset
|
1539 if (ok) |
1689 | 1540 { |
1541 return; | |
1542 } | |
1543 else | |
1544 { | |
1545 throw OrthancException(ErrorCode_InternalError); | |
1546 } | |
1547 } | |
1548 | |
1549 bool ok = false; | |
1550 | |
1551 try | |
1552 { | |
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1553 switch (element.getTag().getEVR()) |
1689 | 1554 { |
1555 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1556 | |
1557 /** | |
1558 * TODO. | |
1559 **/ | |
1560 | |
1561 case EVR_OB: // other byte | |
1562 case EVR_OW: // other word | |
1563 case EVR_AT: // attribute tag | |
1564 throw OrthancException(ErrorCode_NotImplemented); | |
1565 | |
1566 case EVR_UN: // unknown value representation | |
1567 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1568 | |
1569 | |
1570 /** | |
1571 * String types. | |
1572 **/ | |
1573 | |
1574 case EVR_DS: // decimal string | |
1575 case EVR_IS: // integer string | |
1576 case EVR_AS: // age string | |
1577 case EVR_DA: // date string | |
1578 case EVR_DT: // date time string | |
1579 case EVR_TM: // time string | |
1580 case EVR_AE: // application entity title | |
1581 case EVR_CS: // code string | |
1582 case EVR_SH: // short string | |
1583 case EVR_LO: // long string | |
1584 case EVR_ST: // short text | |
1585 case EVR_LT: // long text | |
1586 case EVR_UT: // unlimited text | |
1587 case EVR_PN: // person name | |
1588 case EVR_UI: // unique identifier | |
3209
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1589 #if DCMTK_VERSION_NUMBER >= 361 |
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1590 case EVR_UC: // unlimited characters |
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1591 case EVR_UR: // URI/URL |
3209
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|
1592 #endif |
1689 | 1593 { |
1594 ok = element.putString(decoded->c_str()).good(); | |
1595 break; | |
1596 } | |
1597 | |
1598 | |
1599 /** | |
1600 * Numerical types | |
1601 **/ | |
1602 | |
1603 case EVR_SL: // signed long | |
1604 { | |
1605 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1606 break; | |
1607 } | |
1608 | |
1609 case EVR_SS: // signed short | |
1610 { | |
1611 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1612 break; | |
1613 } | |
1614 | |
1615 case EVR_UL: // unsigned long | |
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|
1616 #if DCMTK_VERSION_NUMBER >= 362 |
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1617 case EVR_OL: // other long (requires byte-swapping) |
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|
1618 #endif |
1689 | 1619 { |
1620 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1621 break; | |
1622 } | |
1623 | |
1624 case EVR_US: // unsigned short | |
1625 { | |
1626 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1627 break; | |
1628 } | |
1629 | |
1630 case EVR_FL: // float single-precision | |
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|
1631 case EVR_OF: // other float (requires byte swapping) |
1689 | 1632 { |
1633 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1634 break; | |
1635 } | |
1636 | |
1637 case EVR_FD: // float double-precision | |
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|
1638 #if DCMTK_VERSION_NUMBER >= 361 |
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1639 case EVR_OD: // other double (requires byte-swapping) |
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|
1640 #endif |
1689 | 1641 { |
1642 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1643 break; | |
1644 } | |
1645 | |
1646 | |
1647 /** | |
1648 * Sequence types, should never occur at this point. | |
1649 **/ | |
1650 | |
1651 case EVR_SQ: // sequence of items | |
1652 { | |
1653 ok = false; | |
1654 break; | |
1655 } | |
1656 | |
1657 | |
1658 /** | |
1659 * Internal to DCMTK. | |
1660 **/ | |
1661 | |
1662 case EVR_ox: // OB or OW depending on context | |
1663 case EVR_xs: // SS or US depending on context | |
1664 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1665 case EVR_na: // na="not applicable", for data which has no VR | |
1666 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1667 case EVR_item: // used internally for items | |
1668 case EVR_metainfo: // used internally for meta info datasets | |
1669 case EVR_dataset: // used internally for datasets | |
1670 case EVR_fileFormat: // used internally for DICOM files | |
1671 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1672 case EVR_dirRecord: // used internally for DICOMDIR records | |
1673 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1674 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1675 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1676 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1677 case EVR_OverlayData: // used internally for overlay data | |
1678 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1679 default: | |
1680 break; | |
1681 } | |
1682 } | |
1683 catch (boost::bad_lexical_cast&) | |
1684 { | |
1685 ok = false; | |
1686 } | |
1687 | |
1688 if (!ok) | |
1689 { | |
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1690 DicomTag tag(element.getTag().getGroup(), element.getTag().getElement()); |
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1691 throw OrthancException(ErrorCode_BadFileFormat, |
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1692 "While creating a DICOM instance, tag (" + tag.Format() + |
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1693 ") has out-of-range value: \"" + (*decoded) + "\""); |
1689 | 1694 } |
1695 } | |
1696 | |
1697 | |
1693
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1698 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
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1699 const Json::Value& value, |
1818
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1700 bool decodeDataUriScheme, |
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1701 Encoding dicomEncoding, |
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1702 const std::string& privateCreator) |
1689 | 1703 { |
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|
1704 std::unique_ptr<DcmElement> element; |
1689 | 1705 |
1690 | 1706 switch (value.type()) |
1689 | 1707 { |
1690 | 1708 case Json::stringValue: |
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1709 element.reset(CreateElementForTag(tag, privateCreator)); |
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1710 FillElementWithString(*element, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1711 break; |
1712 | |
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1713 case Json::nullValue: |
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1714 element.reset(CreateElementForTag(tag, privateCreator)); |
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1715 FillElementWithString(*element, "", decodeDataUriScheme, dicomEncoding); |
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1716 break; |
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|
1717 |
1690 | 1718 case Json::arrayValue: |
1719 { | |
1720 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1721 if (key.getEVR() != EVR_SQ) | |
1722 { | |
3895 | 1723 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format()); |
1690 | 1724 } |
1725 | |
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|
1726 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key); |
1690 | 1727 element.reset(sequence); |
1728 | |
1729 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1730 { | |
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|
1731 std::unique_ptr<DcmItem> item(new DcmItem); |
1690 | 1732 |
2830 | 1733 switch (value[i].type()) |
1690 | 1734 { |
2830 | 1735 case Json::objectValue: |
1736 { | |
1737 Json::Value::Members members = value[i].getMemberNames(); | |
1738 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1739 { | |
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1740 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding, privateCreator)); |
2830 | 1741 } |
2831 | 1742 break; |
2830 | 1743 } |
1744 | |
1745 case Json::arrayValue: | |
2831 | 1746 { |
2830 | 1747 // Lua cannot disambiguate between an empty dictionary |
1748 // and an empty array | |
1749 if (value[i].size() != 0) | |
1750 { | |
1751 throw OrthancException(ErrorCode_BadParameterType); | |
1752 } | |
1753 break; | |
2831 | 1754 } |
2830 | 1755 |
1756 default: | |
1757 throw OrthancException(ErrorCode_BadParameterType); | |
1690 | 1758 } |
1759 | |
1760 sequence->append(item.release()); | |
1761 } | |
1762 | |
1763 break; | |
1764 } | |
1765 | |
1766 default: | |
3895 | 1767 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format()); |
1689 | 1768 } |
1769 | |
1770 return element.release(); | |
1771 } | |
1765
57b9e6890482
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1772 |
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1773 |
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1774 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
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1775 { |
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1776 DcmElement *element = NULL; |
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1777 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
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1778 { |
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1779 throw OrthancException(ErrorCode_BadFileFormat); |
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1780 } |
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1781 |
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|
1782 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
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1783 DcmPixelSequence* pixelSequence = NULL; |
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1784 if (!pixelData.getEncapsulatedRepresentation |
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diff
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|
1785 (dataset.getCurrentXfer(), NULL, pixelSequence).good()) |
1924
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1786 { |
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1787 return NULL; |
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1788 } |
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1789 else |
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1790 { |
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1791 return pixelSequence; |
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1792 } |
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1793 } |
1934
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1794 |
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1795 |
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|
1796 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
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1797 Encoding defaultEncoding) |
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1798 { |
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1799 if (json.type() != Json::objectValue) |
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1800 { |
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|
1801 throw OrthancException(ErrorCode_BadParameterType); |
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1802 } |
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1803 |
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1804 Encoding encoding = defaultEncoding; |
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1805 |
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1806 const Json::Value::Members tags = json.getMemberNames(); |
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1807 |
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|
1808 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1812 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1813 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1815 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1816 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1817 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1818 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1819 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1820 "Unknown encoding while creating DICOM from JSON: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1821 value.toStyledString()); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1822 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1823 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1824 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1825 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1826 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1827 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1828 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1829 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1848 bool decodeDataUriScheme, |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1849 Encoding defaultEncoding, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1850 const std::string& privateCreator) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1851 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1852 std::unique_ptr<DcmDataset> result(new DcmDataset); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1853 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1854 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1855 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1856 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1857 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1858 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1859 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1860 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1861 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1862 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1863 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1864 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1865 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1866 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1867 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1868 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1869 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1870 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1871 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1872 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1873 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1874 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1875 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1876 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1877 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1878 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1879 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1880 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1881 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1882 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1883 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1884 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1885 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1886 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1887 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1888 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1889 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1890 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1891 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1892 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1893 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1894 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1895 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1896 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1897 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1898 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1899 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1900 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1901 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1902 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1903 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1904 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1905 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1906 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1907 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1908 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1909 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1910 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1911 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1912 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1913 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1914 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1915 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1916 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1917 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1918 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1919 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1920 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1921 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1922 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1923 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1924 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1925 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1926 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1927 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1928 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1929 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
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parents:
1934
diff
changeset
|
1930 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1931 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1932 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1933 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1934 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1935 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1936 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1937 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1938 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1939 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1940 std::unique_ptr<DcmFileFormat> result(new DcmFileFormat); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1941 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1942 result->transferInit(); |
3771
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fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1943 |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1944 /** |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1945 * New in Orthanc 1.6.0: The "size" is given as an argument to the |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1946 * "read()" method. This can avoid huge memory consumption if |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1947 * parsing an invalid DICOM file, which can notably been observed |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1948 * by executing the integration test "test_upload_compressed" on |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1949 * valgrind running Orthanc. |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1950 **/ |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1951 if (!result->read(is, EXS_Unknown, EGL_noChange, size).good()) |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1952 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1953 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1954 "Cannot parse an invalid DICOM file (size: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1955 boost::lexical_cast<std::string>(size) + " bytes)"); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1956 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1957 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1958 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1959 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1960 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1961 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1962 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1963 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1964 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1965 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1966 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1967 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1968 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1969 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1970 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1971 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1972 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1973 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1974 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1975 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1976 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1977 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1978 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1979 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1980 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1981 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1982 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1983 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1984 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1985 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1986 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1987 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1988 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1989 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1990 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1991 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1992 Encoding source, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
1993 bool hasSourceCodeExtensions, |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1994 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1995 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1996 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1997 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1998 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1999 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2000 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2001 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2002 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2003 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2004 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2005 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2006 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2007 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2008 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2009 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2010 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2011 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2012 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2013 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2014 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2015 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2016 std::string a = Toolbox::ConvertToUtf8(c, source, hasSourceCodeExtensions); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2017 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2018 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2019 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2020 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2021 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2022 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2023 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2024 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2025 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2026 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2027 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2028 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2029 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2030 ChangeStringEncoding(*sequence.getItem(j), source, hasSourceCodeExtensions, target); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2031 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2032 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2033 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2034 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2035 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2036 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2037 |
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
2038 #if ORTHANC_ENABLE_LUA == 1 |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2039 void FromDcmtkBridge::ExecuteToDicom(DicomMap& target, |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2040 LuaFunctionCall& call) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2041 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2042 Json::Value output; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2043 call.ExecuteToJson(output, true /* keep strings */); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2044 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2045 target.Clear(); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2046 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2047 if (output.type() == Json::arrayValue && |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2048 output.size() == 0) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2049 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2050 // This case happens for empty tables |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2051 return; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2052 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2053 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2054 if (output.type() != Json::objectValue) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2055 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2056 throw OrthancException(ErrorCode_LuaBadOutput, |
3156 | 2057 "Lua: The script must return a table"); |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2058 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2059 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2060 Json::Value::Members members = output.getMemberNames(); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2061 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2062 for (size_t i = 0; i < members.size(); i++) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2063 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2064 if (output[members[i]].type() != Json::stringValue) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2065 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2066 throw OrthancException(ErrorCode_LuaBadOutput, |
3156 | 2067 "Lua: The script must return a table " |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2068 "mapping names of DICOM tags to strings"); |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2069 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2070 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2071 DicomTag tag(ParseTag(members[i])); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2072 target.SetValue(tag, output[members[i]].asString(), false); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2073 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2074 } |
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
2075 #endif |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2076 |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2077 |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2078 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3448
diff
changeset
|
2079 DcmItem& dataset, |
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3448
diff
changeset
|
2080 const std::set<DicomTag>& ignoreTagLength) |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2081 { |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2082 ExtractDicomSummary(target, dataset, |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2083 ORTHANC_MAXIMUM_TAG_LENGTH, |
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3448
diff
changeset
|
2084 GetDefaultDicomEncoding(), ignoreTagLength); |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2085 } |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2086 |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2087 |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2088 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2089 DcmDataset& dataset, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2090 const std::set<DicomTag>& ignoreTagLength) |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2091 { |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2092 ExtractDicomAsJson(target, dataset, |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2093 DicomToJsonFormat_Full, |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2094 DicomToJsonFlags_Default, |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2095 ORTHANC_MAXIMUM_TAG_LENGTH, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2096 GetDefaultDicomEncoding(), |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2097 ignoreTagLength); |
2381
b8969010b534
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2098 } |
b8969010b534
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2099 |
b8969010b534
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2100 |
b8969010b534
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2101 void FromDcmtkBridge::InitializeCodecs() |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2102 { |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2103 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
2528
832217e4e872
old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2522
diff
changeset
|
2104 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK"; |
3727
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2105 DJLSDecoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2106 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2107 DJLSEncoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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3712
diff
changeset
|
2108 # endif |
2381
b8969010b534
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diff
changeset
|
2109 #endif |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2110 |
b8969010b534
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2111 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
2528
832217e4e872
old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2522
diff
changeset
|
2112 LOG(INFO) << "Registering JPEG codecs in DCMTK"; |
2381
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changeset
|
2113 DJDecoderRegistration::registerCodecs(); |
3727
090022f1b5e1
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2114 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2115 DJEncoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
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changeset
|
2116 # endif |
2381
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changeset
|
2117 #endif |
3748
ca36e3f1112c
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Sebastien Jodogne <s.jodogne@gmail.com>
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3743
diff
changeset
|
2118 |
ca36e3f1112c
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parents:
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diff
changeset
|
2119 LOG(INFO) << "Registering RLE codecs in DCMTK"; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2120 DcmRLEDecoderRegistration::registerCodecs(); |
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changeset
|
2121 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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transcoding to uncompressed transfer syntaxes
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changeset
|
2122 DcmRLEEncoderRegistration::registerCodecs(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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changeset
|
2123 #endif |
2381
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|
2124 } |
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changeset
|
2125 |
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changeset
|
2126 |
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changeset
|
2127 void FromDcmtkBridge::FinalizeCodecs() |
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changeset
|
2128 { |
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changeset
|
2129 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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|
2130 // Unregister JPEG-LS codecs |
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changeset
|
2131 DJLSDecoderRegistration::cleanup(); |
3727
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changeset
|
2132 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
090022f1b5e1
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changeset
|
2133 DJLSEncoderRegistration::cleanup(); |
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changeset
|
2134 # endif |
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changeset
|
2135 #endif |
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2136 |
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2137 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2138 // Unregister JPEG codecs |
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2139 DJDecoderRegistration::cleanup(); |
3727
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2140 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2141 DJEncoderRegistration::cleanup(); |
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2142 # endif |
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2143 #endif |
3748
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2144 |
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2145 DcmRLEDecoderRegistration::cleanup(); |
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2146 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2147 DcmRLEEncoderRegistration::cleanup(); |
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2148 #endif |
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2149 } |
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2150 |
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2151 |
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2152 |
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2153 // Forward declaration |
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2154 static void ApplyVisitorToElement(DcmElement& element, |
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2155 ITagVisitor& visitor, |
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2156 const std::vector<DicomTag>& parentTags, |
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2157 const std::vector<size_t>& parentIndexes, |
3217
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2158 Encoding encoding, |
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|
2159 bool hasCodeExtensions); |
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2160 |
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2161 static void ApplyVisitorToDataset(DcmItem& dataset, |
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2162 ITagVisitor& visitor, |
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2163 const std::vector<DicomTag>& parentTags, |
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2164 const std::vector<size_t>& parentIndexes, |
3217
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|
2165 Encoding encoding, |
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|
2166 bool hasCodeExtensions) |
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2167 { |
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|
2168 assert(parentTags.size() == parentIndexes.size()); |
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2169 |
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2170 for (unsigned long i = 0; i < dataset.card(); i++) |
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|
2171 { |
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2172 DcmElement* element = dataset.getElement(i); |
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2173 if (element == NULL) |
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2174 { |
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2175 throw OrthancException(ErrorCode_InternalError); |
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2176 } |
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2177 else |
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2178 { |
3217
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|
2179 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
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2180 } |
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2181 } |
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2182 } |
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2183 |
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2184 |
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2185 static void ApplyVisitorToLeaf(DcmElement& element, |
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2186 ITagVisitor& visitor, |
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2187 const std::vector<DicomTag>& parentTags, |
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2188 const std::vector<size_t>& parentIndexes, |
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2189 const DicomTag& tag, |
3217
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2190 Encoding encoding, |
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|
2191 bool hasCodeExtensions) |
2499
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2192 { |
3198
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2193 // TODO - Merge this function, that is more recent, with ConvertLeafElement() |
2499
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2194 |
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2195 assert(element.isLeaf()); |
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2196 |
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2197 DcmEVR evr = element.getTag().getEVR(); |
3198
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2198 |
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2199 |
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|
2200 /** |
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2201 * Fix the EVR for types internal to DCMTK |
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2202 **/ |
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|
2203 |
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2204 if (evr == EVR_ox) // OB or OW depending on context |
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2205 { |
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2206 evr = EVR_OB; |
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2207 } |
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2208 |
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2209 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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2210 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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2211 { |
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2212 evr = EVR_UN; |
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2213 } |
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2214 |
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2215 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr); |
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2216 |
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2217 |
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2218 /** |
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2219 * Deal with binary data (including PixelData). |
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2220 **/ |
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2221 |
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2222 if (evr == EVR_OB || // other byte |
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2223 evr == EVR_OW || // other word |
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2224 evr == EVR_UN) // unknown value representation |
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2225 { |
3199
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2226 Uint16* data16 = NULL; |
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2227 Uint8* data = NULL; |
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2228 |
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2229 if (evr == EVR_OW && |
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2230 element.getUint16Array(data16) == EC_Normal) |
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2231 { |
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2232 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data16, element.getLength()); |
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2233 } |
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2234 else if (evr != EVR_OW && |
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2235 element.getUint8Array(data) == EC_Normal) |
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2236 { |
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2237 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength()); |
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2238 } |
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2239 else |
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2240 { |
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2241 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
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2242 } |
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2243 |
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2244 return; // We're done |
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2245 } |
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2246 |
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2247 |
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2248 /** |
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2249 * Deal with plain strings (and convert them to UTF-8) |
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2250 **/ |
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diff
changeset
|
2251 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2252 char *c = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2253 if (element.isaString() && |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2254 element.getString(c).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2255 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2256 std::string utf8; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2257 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2258 if (c != NULL) // This case corresponds to the empty string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2259 { |
3448
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2260 if (element.getTag() == DCM_SpecificCharacterSet) |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2261 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2262 utf8.assign(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2263 } |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2264 else |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2265 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2266 std::string s(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2267 utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2268 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2269 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2270 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2271 std::string newValue; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2272 ITagVisitor::Action action = visitor.VisitString |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2273 (newValue, parentTags, parentIndexes, tag, vr, utf8); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2274 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2275 switch (action) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2276 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2277 case ITagVisitor::Action_None: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2278 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2279 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2280 case ITagVisitor::Action_Replace: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2281 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2282 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding); |
2522
ce2dfba9417c
fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2513
diff
changeset
|
2283 if (element.putString(s.c_str()) != EC_Normal) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2284 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2285 throw OrthancException(ErrorCode_InternalError, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2286 "Cannot replace value of tag: " + tag.Format()); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2287 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2288 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2289 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2290 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2291 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2292 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2293 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2294 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2295 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2296 return; // We're done |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2297 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2298 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2299 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2300 try |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2301 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2302 // http://support.dcmtk.org/docs/dcvr_8h-source.html |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2303 switch (evr) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2304 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2305 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2306 /** |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2307 * Plain string values. |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2308 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2309 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2310 case EVR_DS: // decimal string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2311 case EVR_IS: // integer string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2312 case EVR_AS: // age string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2313 case EVR_DA: // date string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2314 case EVR_DT: // date time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2315 case EVR_TM: // time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2316 case EVR_AE: // application entity title |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2317 case EVR_CS: // code string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2318 case EVR_SH: // short string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2319 case EVR_LO: // long string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2320 case EVR_ST: // short text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2321 case EVR_LT: // long text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2322 case EVR_UT: // unlimited text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2323 case EVR_PN: // person name |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2324 case EVR_UI: // unique identifier |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2325 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2326 Uint8* data = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2327 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2328 if (element.getUint8Array(data) == EC_Normal) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2329 { |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2330 const Uint32 length = element.getLength(); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2331 Uint32 l = 0; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2332 while (l < length && |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2333 data[l] != 0) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2334 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2335 l++; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2336 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2337 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2338 if (l == length) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2339 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2340 // Not a null-terminated plain string |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2341 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2342 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2343 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2344 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2345 std::string ignored; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2346 std::string s(reinterpret_cast<const char*>(data), l); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2347 ITagVisitor::Action action = visitor.VisitString |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2348 (ignored, parentTags, parentIndexes, tag, vr, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2349 Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions)); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2350 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2351 if (action != ITagVisitor::Action_None) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2352 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2353 LOG(WARNING) << "Cannot replace this string tag: " |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2354 << FromDcmtkBridge::GetTagName(element) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2355 << " (" << tag.Format() << ")"; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2356 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2357 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2358 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2359 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2360 { |
3195 | 2361 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2362 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2363 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2364 return; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2365 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2366 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2367 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2368 * Numeric types |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2369 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2370 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2371 case EVR_SL: // signed long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2372 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2373 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2374 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2375 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2376 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2377 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2378 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2379 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2380 Sint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2381 if (content.getSint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2382 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2383 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2384 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2385 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2386 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2387 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2388 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2389 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2390 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2391 case EVR_SS: // signed short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2392 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2393 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2394 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2395 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2396 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2397 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2398 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2399 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2400 Sint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2401 if (content.getSint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2402 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2403 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2404 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2405 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2406 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2407 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2408 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2409 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2410 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2411 case EVR_UL: // unsigned long |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2412 #if DCMTK_VERSION_NUMBER >= 362 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2413 case EVR_OL: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2414 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2415 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2416 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2417 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2418 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2419 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2420 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2421 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2422 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2423 Uint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2424 if (content.getUint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2425 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2426 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2427 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2428 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2429 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2430 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2431 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2432 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2433 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2434 case EVR_US: // unsigned short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2435 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2436 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2437 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2438 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2439 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2440 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2441 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2442 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2443 Uint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2444 if (content.getUint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2445 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2446 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2447 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2448 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2449 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2450 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2451 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2452 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2453 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2454 case EVR_FL: // float single-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2455 case EVR_OF: |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2456 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2457 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2458 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2459 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2460 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2461 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2462 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2463 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2464 Float32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2465 if (content.getFloat32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2466 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2467 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2468 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2469 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2470 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2471 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2472 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2473 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2474 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2475 case EVR_FD: // float double-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2476 #if DCMTK_VERSION_NUMBER >= 361 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2477 case EVR_OD: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2478 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2479 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2480 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2481 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2482 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2483 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2484 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2485 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2486 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2487 Float64 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2488 if (content.getFloat64(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2489 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2490 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2491 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2492 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2493 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2494 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2495 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2496 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2497 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2498 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2499 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2500 * Attribute tag. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2501 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2502 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2503 case EVR_AT: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2504 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2505 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2506 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2507 std::vector<DicomTag> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2508 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2509 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2510 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2511 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2512 DcmTagKey f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2513 if (content.getTagVal(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2514 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2515 DicomTag t(f.getGroup(), f.getElement()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2516 values.push_back(t); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2517 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2518 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2519 |
3195 | 2520 assert(vr == ValueRepresentation_AttributeTag); |
2521 visitor.VisitAttributes(parentTags, parentIndexes, tag, values); | |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2522 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2523 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2524 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2525 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2526 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2527 * Sequence types, should never occur at this point because of |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2528 * "element.isLeaf()". |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2529 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2530 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2531 case EVR_SQ: // sequence of items |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2532 { |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2533 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2534 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2535 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2536 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2537 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2538 * Internal to DCMTK. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2539 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2540 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2541 case EVR_xs: // SS or US depending on context |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2542 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2543 case EVR_na: // na="not applicable", for data which has no VR |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2544 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2545 case EVR_item: // used internally for items |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2546 case EVR_metainfo: // used internally for meta info datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2547 case EVR_dataset: // used internally for datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2548 case EVR_fileFormat: // used internally for DICOM files |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2549 case EVR_dicomDir: // used internally for DICOMDIR objects |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2550 case EVR_dirRecord: // used internally for DICOMDIR records |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2551 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2552 case EVR_pixelItem: // used internally for pixel items in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2553 case EVR_PixelData: // used internally for uncompressed pixeld data |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2554 case EVR_OverlayData: // used internally for overlay data |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2555 { |
3195 | 2556 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2557 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2558 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2559 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2560 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2561 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2562 * Default case. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2563 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2564 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2565 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2566 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2567 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2568 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2569 catch (boost::bad_lexical_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2570 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2571 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2572 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2573 catch (std::bad_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2574 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2575 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2576 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2577 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2578 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2579 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2580 static void ApplyVisitorToElement(DcmElement& element, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2581 ITagVisitor& visitor, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2582 const std::vector<DicomTag>& parentTags, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2583 const std::vector<size_t>& parentIndexes, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2584 Encoding encoding, |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2585 bool hasCodeExtensions) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2586 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2587 assert(parentTags.size() == parentIndexes.size()); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2588 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2589 DicomTag tag(FromDcmtkBridge::Convert(element.getTag())); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2590 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2591 if (element.isLeaf()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2592 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2593 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding, hasCodeExtensions); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2594 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2595 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2596 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2597 // "All subclasses of DcmElement except for DcmSequenceOfItems |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2598 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2599 // etc. are not." The following dynamic_cast is thus OK. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2600 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2601 |
3195 | 2602 if (sequence.card() == 0) |
2603 { | |
2604 visitor.VisitEmptySequence(parentTags, parentIndexes, tag); | |
2605 } | |
2606 else | |
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2607 { |
3195 | 2608 std::vector<DicomTag> tags = parentTags; |
2609 std::vector<size_t> indexes = parentIndexes; | |
2610 tags.push_back(tag); | |
2611 indexes.push_back(0); | |
2612 | |
2613 for (unsigned long i = 0; i < sequence.card(); i++) | |
2614 { | |
2615 indexes.back() = static_cast<size_t>(i); | |
2616 DcmItem* child = sequence.getItem(i); | |
3217
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2617 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding, hasCodeExtensions); |
3195 | 2618 } |
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2619 } |
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2620 } |
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2621 } |
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2622 |
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2623 |
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2624 void FromDcmtkBridge::Apply(DcmItem& dataset, |
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2625 ITagVisitor& visitor, |
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2626 Encoding defaultEncoding) |
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2627 { |
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2628 std::vector<DicomTag> parentTags; |
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2629 std::vector<size_t> parentIndexes; |
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2630 bool hasCodeExtensions; |
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2631 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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2632 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
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2633 } |
3882
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2634 |
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2635 |
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2636 |
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2637 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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2638 DcmFileFormat& dicom) |
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2639 { |
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2640 if (dicom.getDataset() == NULL) |
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2641 { |
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2642 throw OrthancException(ErrorCode_InternalError); |
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2643 } |
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2644 |
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2645 DcmDataset& dataset = *dicom.getDataset(); |
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2646 |
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2647 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
3882
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2648 if (xfer == EXS_Unknown) |
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2649 { |
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2650 dataset.updateOriginalXfer(); |
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2651 xfer = dataset.getOriginalXfer(); |
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2652 if (xfer == EXS_Unknown) |
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2653 { |
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2654 throw OrthancException(ErrorCode_BadFileFormat, |
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2655 "Cannot determine the transfer syntax of the DICOM instance"); |
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2656 } |
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2657 } |
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2658 |
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2659 return FromDcmtkBridge::LookupOrthancTransferSyntax(target, xfer); |
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2660 } |
0 | 2661 } |
3730
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2662 |
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2663 |
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2664 #include "./FromDcmtkBridge_TransferSyntaxes.impl.h" |