Mercurial > hg > orthanc

annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.cpp @ 4334:b2366bc023f8

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Fix access to videos as a single raw frame
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 30 Nov 2020 16:33:40 +0100
parents 91554aecff9a
children d9473bd5ed43
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "../PrecompiledHeaders.h"
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24
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25 #ifndef NOMINMAX
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26 #define NOMINMAX
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27 #endif
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29 #if !defined(ORTHANC_SANDBOXED)
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30 # error The macro ORTHANC_SANDBOXED must be defined
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31 #endif
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32
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33 #if !defined(DCMTK_VERSION_NUMBER)
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34 # error The macro DCMTK_VERSION_NUMBER must be defined
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35 #endif
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36
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37 #include "FromDcmtkBridge.h"
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38 #include "ToDcmtkBridge.h"
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39 #include "../Compatibility.h"
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40 #include "../Logging.h"
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41 #include "../Toolbox.h"
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42 #include "../OrthancException.h"
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43
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44 #if ORTHANC_SANDBOXED == 0
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45 # include "../TemporaryFile.h"
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46 #endif
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47
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48 #include <list>
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49 #include <limits>
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50
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51 #include <boost/lexical_cast.hpp>
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52 #include <boost/filesystem.hpp>
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53 #include <boost/algorithm/string/predicate.hpp>
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54 #include <boost/algorithm/string/join.hpp>
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55
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56 #include <dcmtk/dcmdata/dcdeftag.h>
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57 #include <dcmtk/dcmdata/dcdicent.h>
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58 #include <dcmtk/dcmdata/dcdict.h>
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59 #include <dcmtk/dcmdata/dcfilefo.h>
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60 #include <dcmtk/dcmdata/dcistrmb.h>
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61 #include <dcmtk/dcmdata/dcostrmb.h>
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62 #include <dcmtk/dcmdata/dcpixel.h>
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63 #include <dcmtk/dcmdata/dcuid.h>
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64 #include <dcmtk/dcmdata/dcxfer.h>
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65
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66 #include <dcmtk/dcmdata/dcvrae.h>
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67 #include <dcmtk/dcmdata/dcvras.h>
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68 #include <dcmtk/dcmdata/dcvrat.h>
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69 #include <dcmtk/dcmdata/dcvrcs.h>
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70 #include <dcmtk/dcmdata/dcvrda.h>
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71 #include <dcmtk/dcmdata/dcvrds.h>
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72 #include <dcmtk/dcmdata/dcvrdt.h>
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73 #include <dcmtk/dcmdata/dcvrfd.h>
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74 #include <dcmtk/dcmdata/dcvrfl.h>
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75 #include <dcmtk/dcmdata/dcvris.h>
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76 #include <dcmtk/dcmdata/dcvrlo.h>
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77 #include <dcmtk/dcmdata/dcvrlt.h>
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78 #include <dcmtk/dcmdata/dcvrpn.h>
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79 #include <dcmtk/dcmdata/dcvrsh.h>
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80 #include <dcmtk/dcmdata/dcvrsl.h>
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81 #include <dcmtk/dcmdata/dcvrss.h>
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82 #include <dcmtk/dcmdata/dcvrst.h>
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83 #include <dcmtk/dcmdata/dcvrtm.h>
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84 #include <dcmtk/dcmdata/dcvrui.h>
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85 #include <dcmtk/dcmdata/dcvrul.h>
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86 #include <dcmtk/dcmdata/dcvrus.h>
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87 #include <dcmtk/dcmdata/dcvrut.h>
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88
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89 #if DCMTK_VERSION_NUMBER >= 361
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90 # include <dcmtk/dcmdata/dcvruc.h>
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91 # include <dcmtk/dcmdata/dcvrur.h>
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92 #endif
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93
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94 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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95 # include <OrthancFrameworkResources.h>
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96 #endif
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98 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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99 # include <dcmtk/dcmjpeg/djdecode.h>
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100 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
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101 # include <dcmtk/dcmjpeg/djencode.h>
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102 # endif
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103 #endif
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105 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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106 # include <dcmtk/dcmjpls/djdecode.h>
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107 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
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108 # include <dcmtk/dcmjpls/djencode.h>
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109 # endif
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110 #endif
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111
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112
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113 #include <dcmtk/dcmdata/dcrledrg.h>
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114 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
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115 # include <dcmtk/dcmdata/dcrleerg.h>
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116 # include <dcmtk/dcmimage/diregist.h> // include to support color images
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117 #endif
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118
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119
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120 namespace Orthanc
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121 {
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122 static bool IsBinaryTag(const DcmTag& key)
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123 {
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124 return (key.isUnknownVR() ||
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125 key.getEVR() == EVR_OB ||
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126 key.getEVR() == EVR_OW ||
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127 key.getEVR() == EVR_UN ||
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128 key.getEVR() == EVR_ox);
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129 }
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130
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131
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132 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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133 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary,
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134 FrameworkResources::FileResourceId resource)
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135 {
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136 std::string content;
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137 FrameworkResources::GetFileResource(content, resource);
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138
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139 #if ORTHANC_SANDBOXED == 0
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140 TemporaryFile tmp;
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141 tmp.Write(content);
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142
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143 if (!dictionary.loadDictionary(tmp.GetPath().c_str()))
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144 {
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145 throw OrthancException(ErrorCode_InternalError,
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146 "Cannot read embedded dictionary. Under Windows, make sure that "
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147 "your TEMP directory does not contain special characters.");
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148 }
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149 #else
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150 if (!dictionary.loadFromMemory(content))
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151 {
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152 throw OrthancException(ErrorCode_InternalError,
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153 "Cannot read embedded dictionary. Under Windows, make sure that "
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154 "your TEMP directory does not contain special characters.");
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155 }
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156 #endif
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157 }
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158 #endif
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159
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160
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161 namespace
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162 {
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163 class DictionaryLocker : public boost::noncopyable
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164 {
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165 private:
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166 DcmDataDictionary& dictionary_;
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167
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168 public:
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169 DictionaryLocker() : dictionary_(dcmDataDict.wrlock())
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170 {
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171 }
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172
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173 ~DictionaryLocker()
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174 {
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175 #if DCMTK_VERSION_NUMBER >= 364
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176 dcmDataDict.wrunlock();
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177 #else
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178 dcmDataDict.unlock();
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179 #endif
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180 }
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181
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182 DcmDataDictionary& operator*()
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183 {
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184 return dictionary_;
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185 }
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186
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187 DcmDataDictionary* operator->()
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188 {
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189 return &dictionary_;
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190 }
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191 };
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192
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193
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194 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter) \
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195 \
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196 struct converter \
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197 { \
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198 typedef cType CType; \
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199 \
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200 static bool Apply(CType& result, \
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201 DcmElement& element, \
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202 size_t i) \
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203 { \
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204 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \
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205 } \
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206 };
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207
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208 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32)
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209 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16)
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210 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32)
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211 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16)
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212 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32)
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213 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64)
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214
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215
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216 template <typename F>
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217 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element)
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218 {
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219 F f;
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220 typename F::CType value;
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221
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222 if (element.getLength() > sizeof(typename F::CType)
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223 && (element.getLength() % sizeof(typename F::CType)) == 0)
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224 {
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225 size_t count = element.getLength() / sizeof(typename F::CType);
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226 std::vector<std::string> strings;
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227 for (size_t i = 0; i < count; i++) {
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228 if (f.Apply(value, element, i)) {
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229 strings.push_back(boost::lexical_cast<std::string>(value));
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230 }
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231 }
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232 return new DicomValue(boost::algorithm::join(strings, "\\"), false);
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233 }
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234 else if (f.Apply(value, element, 0)) {
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235 return new DicomValue(boost::lexical_cast<std::string>(value), false);
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236 }
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237 else {
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238 return new DicomValue;
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239 }
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240 }
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241
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242 }
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243
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244
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245 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary)
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246 {
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247 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER;
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248
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249 {
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250 DictionaryLocker locker;
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251
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252 locker->clear();
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253
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254 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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255 LOG(INFO) << "Loading the embedded dictionaries";
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256 /**
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257 * Do not load DICONDE dictionary, it breaks the other tags. The
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258 * command "strace storescu 2>&1 |grep dic" shows that DICONDE
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259 * dictionary is not loaded by storescu.
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260 **/
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261 //LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICONDE);
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262
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263 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICOM);
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264
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265 if (loadPrivateDictionary)
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266 {
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267 LOG(INFO) << "Loading the embedded dictionary of private tags";
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268 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_PRIVATE);
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269 }
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270 else
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271 {
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272 LOG(INFO) << "The dictionary of private tags has not been loaded";
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273 }
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274
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275 #else
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276 std::vector<std::string> dictionaries;
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277
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278 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE);
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279 if (env != NULL)
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280 {
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281 // This mimics the behavior of DCMTK:
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282 // https://support.dcmtk.org/docs/file_envvars.html
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283 #if defined(_WIN32)
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284 Toolbox::TokenizeString(dictionaries, std::string(env), ';');
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285 #else
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286 Toolbox::TokenizeString(dictionaries, std::string(env), ':');
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287 #endif
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288 }
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289 else
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290 {
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291 boost::filesystem::path base = DCMTK_DICTIONARY_DIR;
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292 dictionaries.push_back((base / "dicom.dic").string());
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293 dictionaries.push_back((base / "private.dic").string());
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294 }
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295
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296 for (size_t i = 0; i < dictionaries.size(); i++)
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297 {
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298 LOG(WARNING) << "Loading external DICOM dictionary: \"" << dictionaries[i] << "\"";
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299
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300 if (!locker->loadDictionary(dictionaries[i].c_str()))
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301 {
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302 throw OrthancException(ErrorCode_InexistentFile);
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303 }
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304 }
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305
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306 #endif
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307 }
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308
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309 /* make sure data dictionary is loaded */
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310 if (!dcmDataDict.isDictionaryLoaded())
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311 {
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312 throw OrthancException(ErrorCode_InternalError,
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313 "No DICOM dictionary loaded, check environment variable: " +
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314 std::string(DCM_DICT_ENVIRONMENT_VARIABLE));
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315 }
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316
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317 {
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318 // Test the dictionary with a simple DICOM tag
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319 DcmTag key(0x0010, 0x1030); // This is PatientWeight
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320 if (key.getEVR() != EVR_DS)
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321 {
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322 throw OrthancException(ErrorCode_InternalError,
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323 "The DICOM dictionary has not been correctly read");
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324 }
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325 }
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326 }
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327
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328
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329 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag,
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330 ValueRepresentation vr,
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331 const std::string& name,
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332 unsigned int minMultiplicity,
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333 unsigned int maxMultiplicity,
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334 const std::string& privateCreator)
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335 {
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336 if (minMultiplicity < 1)
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337 {
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338 throw OrthancException(ErrorCode_ParameterOutOfRange);
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339 }
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340
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341 bool arbitrary = false;
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342 if (maxMultiplicity == 0)
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343 {
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344 maxMultiplicity = DcmVariableVM;
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345 arbitrary = true;
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346 }
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347 else if (maxMultiplicity < minMultiplicity)
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348 {
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349 throw OrthancException(ErrorCode_ParameterOutOfRange);
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350 }
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351
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352 DcmEVR evr = ToDcmtkBridge::Convert(vr);
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353
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354 LOG(INFO) << "Registering tag in dictionary: (" << tag.Format() << ") "
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355 << (DcmVR(evr).getValidVRName()) << " "
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356 << name << " (multiplicity: " << minMultiplicity << "-"
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357 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")";
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diff changeset
358
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diff changeset
359 std::unique_ptr<DcmDictEntry> entry;
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360 if (privateCreator.empty())
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361 {
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362 if (tag.GetGroup() % 2 == 1)
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363 {
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diff changeset
364 char buf[128];
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365 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), "
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366 "but no private creator was associated with it",
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367 tag.GetGroup(), tag.GetElement());
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368 LOG(WARNING) << buf;
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369 }
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370
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371 entry.reset(new DcmDictEntry(tag.GetGroup(),
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372 tag.GetElement(),
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373 evr, name.c_str(),
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374 static_cast<int>(minMultiplicity),
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375 static_cast<int>(maxMultiplicity),
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diff changeset
376 NULL /* version */,
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diff changeset
377 OFTrue /* doCopyString */,
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diff changeset
378 NULL /* private creator */));
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379 }
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diff changeset
380 else
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
381 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
382 // "Private Data Elements have an odd Group Number that is not
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
383 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
384 // (FFFF,eeee)."
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
385 if (tag.GetGroup() % 2 == 0 /* even */ ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
386 tag.GetGroup() == 0x0001 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
387 tag.GetGroup() == 0x0003 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
388 tag.GetGroup() == 0x0005 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
389 tag.GetGroup() == 0x0007 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
390 tag.GetGroup() == 0xffff)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
391 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
392 char buf[128];
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
393 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009",
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
394 tag.GetGroup(), tag.GetElement());
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
395 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf));
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
396 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
397
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
398 entry.reset(new DcmDictEntry(tag.GetGroup(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
399 tag.GetElement(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
400 evr, name.c_str(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
401 static_cast<int>(minMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
402 static_cast<int>(maxMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
403 "private" /* version */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
404 OFTrue /* doCopyString */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
405 privateCreator.c_str()));
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
406 }
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
407
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
408 entry->setGroupRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
409 entry->setElementRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
410
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
411 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
412 DictionaryLocker locker;
2116
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
413
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
414 if (locker->findEntry(name.c_str()))
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
415 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
416 throw OrthancException(ErrorCode_AlreadyExistingTag,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
417 "Cannot register two tags with the same symbolic name \"" + name + "\"");
2116
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
418 }
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
419
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
420 locker->addEntry(entry.release());
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
421 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
422 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
423
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
424
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
425 Encoding FromDcmtkBridge::DetectEncoding(bool& hasCodeExtensions,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
426 DcmItem& dataset,
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1927
diff changeset
427 Encoding defaultEncoding)
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
428 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
429 // http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
430
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
431 OFString tmp;
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
432 if (dataset.findAndGetOFStringArray(DCM_SpecificCharacterSet, tmp).good())
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
433 {
3217
cf8cbeb35f33 preliminary support of Korean character set
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parents: 3209
diff changeset
434 std::vector<std::string> tokens;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
435 Toolbox::TokenizeString(tokens, std::string(tmp.c_str()), '\\');
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
436
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
437 hasCodeExtensions = (tokens.size() > 1);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
438
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
439 for (size_t i = 0; i < tokens.size(); i++)
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
440 {
3217
cf8cbeb35f33 preliminary support of Korean character set
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parents: 3209
diff changeset
441 std::string characterSet = Toolbox::StripSpaces(tokens[i]);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
442
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
443 if (!characterSet.empty())
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
444 {
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
445 Encoding encoding;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
446
cf8cbeb35f33 preliminary support of Korean character set
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parents: 3209
diff changeset
447 if (GetDicomEncoding(encoding, characterSet.c_str()))
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
448 {
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
449 // The specific character set is supported by the Orthanc core
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parents: 3209
diff changeset
450 return encoding;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
451 }
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
452 else
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
453 {
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
454 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
455 << ", fallback to ASCII (remove all special characters)";
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
456 return Encoding_Ascii;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
457 }
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
458 }
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
459 }
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
460 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
461 else
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
462 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
463 hasCodeExtensions = false;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
464 }
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
465
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
466 // No specific character set tag: Use the default encoding
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
467 return defaultEncoding;
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
468 }
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
469
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
470
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
471 Encoding FromDcmtkBridge::DetectEncoding(DcmItem &dataset,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
472 Encoding defaultEncoding)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
473 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
474 bool hasCodeExtensions; // ignored
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
475 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
476 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
477
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
478
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
479 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target,
2125
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
480 DcmItem& dataset,
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
481 unsigned int maxStringLength,
3577
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3448
diff changeset
482 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 {
4137
6774605d4341 keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4136
diff changeset
484 const Encoding defaultEncoding = GetDefaultDicomEncoding();
6774605d4341 keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4136
diff changeset
485
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
486 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
487 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
488
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 target.Clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 for (unsigned long i = 0; i < dataset.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 DcmElement* element = dataset.getElement(i);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 if (element && element->isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 {
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
495 target.SetValueInternal(element->getTag().getGTag(),
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
496 element->getTag().getETag(),
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
497 ConvertLeafElement(*element, DicomToJsonFlags_Default,
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
498 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength));
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
504 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
505 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
506 return DicomTag(tag.getGTag(), tag.getETag());
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
507 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
508
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
509
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 return DicomTag(element.getGTag(), element.getETag());
3959d33612cc initial commit
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parents:
diff changeset
513 }
3959d33612cc initial commit
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parents:
diff changeset
514
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515
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parents: 949
diff changeset
516 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element,
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b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
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parents: 1735
diff changeset
517 DicomToJsonFlags flags,
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cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
518 unsigned int maxStringLength,
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parents: 2382
diff changeset
519 Encoding encoding,
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cf8cbeb35f33 preliminary support of Korean character set
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parents: 3209
diff changeset
520 bool hasCodeExtensions,
2409
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parents: 2382
diff changeset
521 const std::set<DicomTag>& ignoreTagLength)
0
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parents:
diff changeset
522 {
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parents:
diff changeset
523 if (!element.isLeaf())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 {
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bd1889029cbb encoding of exceptions
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parents: 1557
diff changeset
525 // This function is only applicable to leaf elements
bd1889029cbb encoding of exceptions
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diff changeset
526 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
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parents:
diff changeset
527 }
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parents:
diff changeset
528
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parents: 1792
diff changeset
529 char *c = NULL;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
530 if (element.isaString() &&
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
531 element.getString(c).good())
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 {
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parents: 1792
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533 if (c == NULL) // This case corresponds to the empty string
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534 {
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parents: 1792
diff changeset
535 return new DicomValue("", false);
0
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parents:
diff changeset
536 }
3959d33612cc initial commit
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parents:
diff changeset
537 else
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parents:
diff changeset
538 {
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1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
539 std::string s(c);
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cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
540 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions);
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e2c3d752ee1a prevent too long tags to be inserted
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parents: 1831
diff changeset
541
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cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
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parents: 1928
diff changeset
542 if (maxStringLength != 0 &&
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parents: 2382
diff changeset
543 utf8.size() > maxStringLength &&
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parents: 2382
diff changeset
544 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
1854
e2c3d752ee1a prevent too long tags to be inserted
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parents: 1831
diff changeset
545 {
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parents: 2126
diff changeset
546 return new DicomValue; // Too long, create a NULL value
1854
e2c3d752ee1a prevent too long tags to be inserted
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parents: 1831
diff changeset
547 }
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
548 else
e2c3d752ee1a prevent too long tags to be inserted
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parents: 1831
diff changeset
549 {
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parents: 1831
diff changeset
550 return new DicomValue(utf8, false);
e2c3d752ee1a prevent too long tags to be inserted
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parents: 1831
diff changeset
551 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554
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0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
555
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
556 if (element.getVR() == EVR_UN)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
557 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
558 // Unknown value representation: Lookup in the dictionary. This
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parents: 2126
diff changeset
559 // is notably the case for private tags registered with the
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
560 // "Dictionary" configuration option.
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
561 DictionaryLocker locker;
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parents: 2126
diff changeset
562
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parents: 2126
diff changeset
563 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(),
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
564 element.getTag().getPrivateCreator());
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
565 if (entry != NULL &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
566 entry->getVR().isaString())
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
567 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
568 Uint8* data = NULL;
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
569
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
570 // At (*), we do not try and convert to UTF-8, as nothing says
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
571 // the encoding of the private tag is the same as that of the
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
572 // remaining of the DICOM dataset. Only go for ASCII strings.
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parents: 2126
diff changeset
573
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
574 if (element.getUint8Array(data) == EC_Normal &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
575 Toolbox::IsAsciiString(data, element.getLength())) // (*)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
576 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
577 if (data == NULL)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
578 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
579 return new DicomValue("", false); // Empty string
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
580 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
581 else if (maxStringLength != 0 &&
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
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parents: 2382
diff changeset
582 element.getLength() > maxStringLength &&
e4045b3c9772 ignore-length argument if retrieving DICOM tags
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parents: 2382
diff changeset
583 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
584 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
585 return new DicomValue; // Too long, create a NULL value
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
586 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
587 else
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
588 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
589 std::string s(reinterpret_cast<const char*>(data), element.getLength());
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
590 return new DicomValue(s, false);
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
591 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
592 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
593 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
594 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
595
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
596
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 // http://support.dcmtk.org/docs/dcvr_8h-source.html
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 switch (element.getVR())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 /**
1738
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
604 * Deal with binary data (including PixelData).
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 **/
306
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parents: 305
diff changeset
606
302
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
607 case EVR_OB: // other byte
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
608 case EVR_OF: // other float
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
609 case EVR_OW: // other word
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
610 case EVR_UN: // unknown value representation
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
611 case EVR_ox: // OB or OW depending on context
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
612 case EVR_DS: // decimal string
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
613 case EVR_IS: // integer string
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
614 case EVR_AS: // age string
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
615 case EVR_DA: // date string
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
616 case EVR_DT: // date time string
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
617 case EVR_TM: // time string
302
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parents: 291
diff changeset
618 case EVR_AE: // application entity title
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
619 case EVR_CS: // code string
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
620 case EVR_SH: // short string
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
621 case EVR_LO: // long string
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
622 case EVR_ST: // short text
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
623 case EVR_LT: // long text
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
624 case EVR_UT: // unlimited text
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
625 case EVR_PN: // person name
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parents: 291
diff changeset
626 case EVR_UI: // unique identifier
1818
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
627 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
628 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
629 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
630 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
631 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
632 Uint8* data = NULL;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
633 if (element.getUint8Array(data) == EC_Normal)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
634 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
635 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
636 }
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
637 }
0
3959d33612cc initial commit
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parents:
diff changeset
638
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
639 return new DicomValue;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
640 }
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
641
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
642 /**
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a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
643 * Numeric types
1818
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
644 **/
0
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diff changeset
645
302
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diff changeset
646 case EVR_SL: // signed long
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diff changeset
647 {
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am@osimis.io
parents: 2528
diff changeset
648 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element);
302
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diff changeset
649 }
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diff changeset
650
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diff changeset
651 case EVR_SS: // signed short
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parents: 291
diff changeset
652 {
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am@osimis.io
parents: 2528
diff changeset
653 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element);
302
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diff changeset
654 }
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diff changeset
655
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parents: 291
diff changeset
656 case EVR_UL: // unsigned long
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parents: 291
diff changeset
657 {
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am@osimis.io
parents: 2528
diff changeset
658 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element);
302
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diff changeset
659 }
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diff changeset
660
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parents: 291
diff changeset
661 case EVR_US: // unsigned short
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parents: 291
diff changeset
662 {
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ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
663 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element);
302
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parents: 291
diff changeset
664 }
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parents: 291
diff changeset
665
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parents: 291
diff changeset
666 case EVR_FL: // float single-precision
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
667 {
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ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
668 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element);
302
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parents: 291
diff changeset
669 }
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parents: 291
diff changeset
670
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671 case EVR_FD: // float double-precision
238134081136 modification of dicom files
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parents: 291
diff changeset
672 {
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ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
673 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element);
1131
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
674 }
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
675
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
676
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parents: 1093
diff changeset
677 /**
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parents: 1093
diff changeset
678 * Attribute tag.
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parents: 1093
diff changeset
679 **/
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parents: 1093
diff changeset
680
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parents: 1093
diff changeset
681 case EVR_AT:
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parents: 1093
diff changeset
682 {
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parents: 1131
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683 DcmTagKey tag;
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parents: 1131
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684 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good())
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parents: 1131
diff changeset
685 {
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parents: 1131
diff changeset
686 DicomTag t(tag.getGroup(), tag.getElement());
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parents: 1736
diff changeset
687 return new DicomValue(t.Format(), false);
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ae9a83a6fa47 simplification
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parents: 1131
diff changeset
688 }
1131
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parents: 1093
diff changeset
689 else
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parents: 1131
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690 {
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parents: 1736
diff changeset
691 return new DicomValue;
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parents: 1131
diff changeset
692 }
302
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diff changeset
693 }
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
694
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
695
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
696 /**
302
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diff changeset
697 * Sequence types, should never occur at this point because of
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parents: 291
diff changeset
698 * "element.isLeaf()".
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parents: 291
diff changeset
699 **/
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700
302
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701 case EVR_SQ: // sequence of items
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parents: 1736
diff changeset
702 return new DicomValue;
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703
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parents:
diff changeset
704
302
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diff changeset
705 /**
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parents: 291
diff changeset
706 * Internal to DCMTK.
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parents: 291
diff changeset
707 **/
0
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parents:
diff changeset
708
302
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diff changeset
709 case EVR_xs: // SS or US depending on context
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parents: 291
diff changeset
710 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
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parents: 291
diff changeset
711 case EVR_na: // na="not applicable", for data which has no VR
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parents: 291
diff changeset
712 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
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parents: 291
diff changeset
713 case EVR_item: // used internally for items
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parents: 291
diff changeset
714 case EVR_metainfo: // used internally for meta info datasets
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parents: 291
diff changeset
715 case EVR_dataset: // used internally for datasets
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parents: 291
diff changeset
716 case EVR_fileFormat: // used internally for DICOM files
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parents: 291
diff changeset
717 case EVR_dicomDir: // used internally for DICOMDIR objects
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parents: 291
diff changeset
718 case EVR_dirRecord: // used internally for DICOMDIR records
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parents: 291
diff changeset
719 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
720 case EVR_pixelItem: // used internally for pixel items in a compressed image
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parents: 291
diff changeset
721 case EVR_PixelData: // used internally for uncompressed pixeld data
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
722 case EVR_OverlayData: // used internally for overlay data
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
723 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
724
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
725
302
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parents: 291
diff changeset
726 /**
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
727 * Default case.
238134081136 modification of dicom files
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parents: 291
diff changeset
728 **/
0
3959d33612cc initial commit
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parents:
diff changeset
729
302
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parents: 291
diff changeset
730 default:
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
731 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
732 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
733 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
734 catch (boost::bad_lexical_cast&)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
735 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
736 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
737 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
738 catch (std::bad_cast&)
306
326d5a4a5af3 modification of instances
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parents: 305
diff changeset
739 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
740 return new DicomValue;
306
326d5a4a5af3 modification of instances
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parents: 305
diff changeset
741 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
742 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
743
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
744
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
745 static Json::Value& PrepareNode(Json::Value& parent,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
746 DcmElement& element,
4d80fc990dae refactoring
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parents: 1686
diff changeset
747 DicomToJsonFormat format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
748 {
1687
4d80fc990dae refactoring
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parents: 1686
diff changeset
749 assert(parent.type() == Json::objectValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
750
35
f6d12037f886 full json vs. simplified json
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parents: 2
diff changeset
751 DicomTag tag(FromDcmtkBridge::GetTag(element));
305
86bb79522f19 name of the private tags
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parents: 304
diff changeset
752 const std::string formattedTag = tag.Format();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
753
1688
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
754 if (format == DicomToJsonFormat_Short)
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
755 {
27d70e9ee2e4 DicomToJsonFormat enumeration
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parents: 1687
diff changeset
756 parent[formattedTag] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
757 return parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
758 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
759
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
760 // This code gives access to the name of the private tags
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
761 std::string tagName = FromDcmtkBridge::GetTagName(element);
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
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parents: 1687
diff changeset
762
27d70e9ee2e4 DicomToJsonFormat enumeration
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parents: 1687
diff changeset
763 switch (format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764 {
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
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parents: 1854
diff changeset
765 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
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parents: 1687
diff changeset
766 parent[tagName] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
767 return parent[tagName];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
768
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
769 case DicomToJsonFormat_Full:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
770 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
771 parent[formattedTag] = Json::objectValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
772 Json::Value& node = parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
773
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
774 if (element.isLeaf())
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
775 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
776 node["Name"] = tagName;
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
777
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
778 if (element.getTag().getPrivateCreator() != NULL)
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
779 {
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
780 node["PrivateCreator"] = element.getTag().getPrivateCreator();
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
781 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
782
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
783 return node;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
784 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
785 else
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
786 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
787 node["Name"] = tagName;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
788 node["Type"] = "Sequence";
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
789 node["Value"] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
790 return node["Value"];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
791 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
792 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
793
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
794 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
795 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
796 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
797 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
798
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
799
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
800 static void LeafValueToJson(Json::Value& target,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
801 const DicomValue& value,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
802 DicomToJsonFormat format,
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
803 DicomToJsonFlags flags,
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
804 unsigned int maxStringLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
805 {
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
806 Json::Value* targetValue = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
807 Json::Value* targetType = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
808
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
809 switch (format)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
810 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
811 case DicomToJsonFormat_Short:
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
812 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
813 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
814 assert(target.type() == Json::nullValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
815 targetValue = &target;
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
816 break;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
817 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
818
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
819 case DicomToJsonFormat_Full:
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
820 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
821 assert(target.type() == Json::objectValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
822 target["Value"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
823 target["Type"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
824 targetType = &target["Type"];
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
825 targetValue = &target["Value"];
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
826 break;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
827 }
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
828
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
829 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
830 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
831 }
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
832
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
833 assert(targetValue != NULL);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
834 assert(targetValue->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
835 assert(targetType == NULL || targetType->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
836
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
837 if (value.IsNull())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
838 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
839 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
840 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
841 *targetType = "Null";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
842 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
843 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
844 else if (value.IsBinary())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
845 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
846 if (flags & DicomToJsonFlags_ConvertBinaryToAscii)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
847 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
848 *targetValue = Toolbox::ConvertToAscii(value.GetContent());
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
849 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
850 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
851 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
852 std::string s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
853 value.FormatDataUriScheme(s);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
854 *targetValue = s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
855 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
856
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
857 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
858 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
859 *targetType = "Binary";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
860 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
861 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
862 else if (maxStringLength == 0 ||
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
863 value.GetContent().size() <= maxStringLength)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
864 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
865 *targetValue = value.GetContent();
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
866
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
867 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
868 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
869 *targetType = "String";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
870 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
871 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
872 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
873 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
874 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
875 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
876 *targetType = "TooLong";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
877 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
878 }
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
879 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
880
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
881
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
882 void FromDcmtkBridge::ElementToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
883 DcmElement& element,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
884 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
885 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
886 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
887 Encoding encoding,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
888 bool hasCodeExtensions,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
889 const std::set<DicomTag>& ignoreTagLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
890 {
1691
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
891 if (parent.type() == Json::nullValue)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
892 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
893 parent = Json::objectValue;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
894 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
895
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
896 assert(parent.type() == Json::objectValue);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
897 Json::Value& target = PrepareNode(parent, element, format);
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
898
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
899 if (element.isLeaf())
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
900 {
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
901 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
902 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
903 (element, flags, 0, encoding, hasCodeExtensions, ignoreTagLength));
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
904
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
905 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
906 {
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
907 LeafValueToJson(target, *v, format, flags, maxStringLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
908 }
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
909 else
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
910 {
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
911 LeafValueToJson(target, *v, format, flags, 0);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
912 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
913 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
914 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
915 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
916 assert(target.type() == Json::nullValue);
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
917 target = Json::arrayValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
918
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
919 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
920 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
921 // etc. are not." The following dynamic_cast is thus OK.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
922 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
923
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
924 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
925 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
926 DcmItem* child = sequence.getItem(i);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
927 Json::Value& v = target.append(Json::objectValue);
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
928 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
929 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
930 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
931 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
932
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
933
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
934 void FromDcmtkBridge::DatasetToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
935 DcmItem& item,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
936 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
937 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
938 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
939 Encoding encoding,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
940 bool hasCodeExtensions,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
941 const std::set<DicomTag>& ignoreTagLength)
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
942 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
943 assert(parent.type() == Json::objectValue);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
944
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
945 for (unsigned long i = 0; i < item.card(); i++)
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
946 {
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
947 DcmElement* element = item.getElement(i);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
948 if (element == NULL)
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
949 {
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
950 throw OrthancException(ErrorCode_InternalError);
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
951 }
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
952
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
953 DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
954
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
955 /*element->getTag().isPrivate()*/
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
956 if (tag.IsPrivate() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
957 !(flags & DicomToJsonFlags_IncludePrivateTags))
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
958 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
959 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
960 }
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
961
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
962 if (!(flags & DicomToJsonFlags_IncludeUnknownTags))
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
963 {
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
964 DictionaryLocker locker;
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
965 if (locker->findEntry(element->getTag(), element->getTag().getPrivateCreator()) == NULL)
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
966 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
967 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
968 }
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
969 }
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
970
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
971 if (IsBinaryTag(element->getTag()))
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
972 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
973 // This is a binary tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
974 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
975 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary)))
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
976 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
977 continue;
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
978 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
979 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
980
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
981 FromDcmtkBridge::ElementToJson(parent, *element, format, flags,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
982 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
983 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
984 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
985
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
986
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
987 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
988 DcmDataset& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
989 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
990 DicomToJsonFlags flags,
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
991 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
992 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
993 {
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4137
diff changeset
994 const Encoding defaultEncoding = GetDefaultDicomEncoding();
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4137
diff changeset
995
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
996 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
997 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
998
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
999 target = Json::objectValue;
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
1000 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1001 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1002
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1003
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1004 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1005 DcmMetaInfo& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1006 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1007 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1008 unsigned int maxStringLength)
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1009 {
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
1010 std::set<DicomTag> ignoreTagLength;
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1011 target = Json::objectValue;
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
1012 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, false, ignoreTagLength);
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1013 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1014
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1015
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1016
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1017 static std::string GetTagNameInternal(DcmTag& tag)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1018 {
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1019 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1020 // Some patches for important tags because of different DICOM
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1021 // dictionaries between DCMTK versions
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1022 DicomTag tmp(tag.getGroup(), tag.getElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1023 std::string n = tmp.GetMainTagsName();
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1024 if (n.size() != 0)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1025 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1026 return n;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1027 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1028 // End of patches
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1029 }
106
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
1030
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1031 #if 0
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1032 // This version explicitly calls the dictionary
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1033 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1034 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1035
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1036 std::string s(DcmTag_ERROR_TagName);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1037 if (entry != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1038 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1039 s = std::string(entry->getTagName());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1040 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1041
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1042 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1043 return s;
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1044 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1045 const char* name = tag.getTagName();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1046 if (name == NULL)
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1047 {
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1048 return DcmTag_ERROR_TagName;
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1049 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1050 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1051 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1052 return std::string(name);
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1053 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1054 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1055 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1056
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1057
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1058 std::string FromDcmtkBridge::GetTagName(const DicomTag& t,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1059 const std::string& privateCreator)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1060 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1061 DcmTag tag(t.GetGroup(), t.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1062
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1063 if (!privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1064 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1065 tag.setPrivateCreator(privateCreator.c_str());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1066 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1067
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1068 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1069 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1070
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1071
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1072 std::string FromDcmtkBridge::GetTagName(const DcmElement& element)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1073 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1074 // Copy the tag to ensure const-correctness of DcmElement. Note
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1075 // that the private creator information is also copied.
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1076 DcmTag tag(element.getTag());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1077
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1078 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1079 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1080
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1081 std::string FromDcmtkBridge::GetTagName(const DicomElement &element)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1082 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1083 return GetTagName(element.GetTag(), "");
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1084 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1085
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1086
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1087
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1088 DicomTag FromDcmtkBridge::ParseTag(const char* name)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1089 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1090 DicomTag parsed(0, 0);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1091 if (DicomTag::ParseHexadecimal(parsed, name))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1092 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1093 return parsed;
1861
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1094 }
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1095
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1096 #if 0
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1097 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1098 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1099
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1100 if (entry == NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1101 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1102 dcmDataDict.unlock();
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1103 throw OrthancException(ErrorCode_UnknownDicomTag);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1104 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1105 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1106 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1107 DcmTagKey key = entry->getKey();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1108 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1109 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1110 return tag;
3959d33612cc initial commit
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parents:
diff changeset
1111 }
305
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1112 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1113 DcmTag tag;
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1114 if (DcmTag::findTagFromName(name, tag).good())
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1115 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1116 return DicomTag(tag.getGTag(), tag.getETag());
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1117 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1118 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1119 {
2470
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1120 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\"";
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1121 throw OrthancException(ErrorCode_UnknownDicomTag);
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1122 }
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1123 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1124 }
3959d33612cc initial commit
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parents:
diff changeset
1125
4297
785a2713323e abi continued
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parents: 4200
diff changeset
1126 DicomTag FromDcmtkBridge::ParseTag(const std::string &name)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1127 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1128 return ParseTag(name.c_str());
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1129 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1130
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1131 bool FromDcmtkBridge::HasTag(const DicomMap &fields, const std::string &tagName)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1132 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1133 return fields.HasTag(ParseTag(tagName));
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1134 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1135
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1136 const DicomValue &FromDcmtkBridge::GetValue(const DicomMap &fields,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1137 const std::string &tagName)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1138 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1139 return fields.GetValue(ParseTag(tagName));
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1140 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1141
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parents: 4200
diff changeset
1142 void FromDcmtkBridge::SetValue(DicomMap &target,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1143 const std::string &tagName,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1144 DicomValue *value)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1145 {
785a2713323e abi continued
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parents: 4200
diff changeset
1146 const DicomTag tag = ParseTag(tagName);
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1147 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value);
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1148 }
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parents: 4200
diff changeset
1149
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1150
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1151 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag)
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1152 {
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1153 DcmTag tmp(tag.GetGroup(), tag.GetElement());
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1154 return tmp.isUnknownVR();
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1155 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1156
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1157
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1158 void FromDcmtkBridge::ToJson(Json::Value& result,
1368
b22ba8c5edbe query retrieve
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parents: 1360
diff changeset
1159 const DicomMap& values,
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1160 bool simplify)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1161 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1162 if (result.type() != Json::objectValue)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1163 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1164 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1165 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1166
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1167 result.clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1168
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1169 for (DicomMap::Content::const_iterator
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1170 it = values.content_.begin(); it != values.content_.end(); ++it)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1171 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1172 // TODO Inject PrivateCreator if some is available in the DicomMap?
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1173 const std::string tagName = GetTagName(it->first, "");
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1174
1368
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1175 if (simplify)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1176 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1177 if (it->second->IsNull())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1178 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1179 result[tagName] = Json::nullValue;
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1180 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1181 else
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1182 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1183 // TODO IsBinary
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1184 result[tagName] = it->second->GetContent();
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1185 }
1368
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1186 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1187 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1188 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1189 Json::Value value = Json::objectValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1190
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1191 value["Name"] = tagName;
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1192
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1193 if (it->second->IsNull())
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1194 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1195 value["Type"] = "Null";
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1196 value["Value"] = Json::nullValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1197 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1198 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1199 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1200 // TODO IsBinary
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1201 value["Type"] = "String";
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1202 value["Value"] = it->second->GetContent();
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1203 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1204
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1205 result[it->first.Format()] = value;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1206 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1207 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1208 }
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1209
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1210
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1211 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level)
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1212 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1213 char uid[100];
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1214
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1215 switch (level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1216 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1217 case ResourceType_Patient:
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1218 // The "PatientID" field is of type LO (Long String), 64
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1219 // Bytes Maximum. An UUID is of length 36, thus it can be used
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1220 // as a random PatientID.
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
1221 return Toolbox::GenerateUuid();
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1222
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1223 case ResourceType_Instance:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1224 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1225
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1226 case ResourceType_Series:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1227 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1228
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1229 case ResourceType_Study:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1230 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1231
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1232 default:
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1233 throw OrthancException(ErrorCode_ParameterOutOfRange);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1234 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1235 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1236
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1237
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1238
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1239 static bool SaveToMemoryBufferInternal(std::string& buffer,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1240 DcmFileFormat& dicom,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1241 E_TransferSyntax xfer)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1242 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1243 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1244
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1245 // Create a memory buffer with the proper size
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1246 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1247 const uint32_t estimatedSize = dicom.calcElementLength(xfer, encodingType); // (*)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1248 buffer.resize(estimatedSize);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1249 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1250
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1251 DcmOutputBufferStream ob(&buffer[0], buffer.size());
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1252
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1253 // Fill the memory buffer with the meta-header and the dataset
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1254 dicom.transferInit();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1255 OFCondition c = dicom.write(ob, xfer, encodingType, NULL,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1256 /*opt_groupLength*/ EGL_recalcGL,
3765
4a25727401cd first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3748
diff changeset
1257 /*opt_paddingType*/ EPD_noChange,
4a25727401cd first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3748
diff changeset
1258 /*padlen*/ 0, /*subPadlen*/ 0, /*instanceLength*/ 0,
4a25727401cd first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3748
diff changeset
1259 EWM_updateMeta /* creates new SOP instance UID on lossy */);
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1260 dicom.transferEnd();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1261
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1262 if (c.good())
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1263 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1264 // The DICOM file is successfully written, truncate the target
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1265 // buffer if its size was overestimated by (*)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1266 ob.flush();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1267
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1268 size_t effectiveSize = static_cast<size_t>(ob.tell());
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1269 if (effectiveSize < buffer.size())
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1270 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1271 buffer.resize(effectiveSize);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1272 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1273
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1274 return true;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1275 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1276 else
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1277 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1278 // Error
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1279 buffer.clear();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1280 return false;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1281 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1282 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1283
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1284
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1285 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1286 DcmDataset& dataSet)
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1287 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1288 // Determine the transfer syntax which shall be used to write the
3811
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1289 // information to the file. If not possible, switch to the Little
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1290 // Endian syntax, with explicit length.
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1292 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1293
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1294
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1295 /**
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1296 * Note that up to Orthanc 0.7.1 (inclusive), the
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1297 * "EXS_LittleEndianExplicit" was always used to save the DICOM
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1298 * dataset into memory. We now keep the original transfer syntax
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1299 * (if available).
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1300 **/
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1301 E_TransferSyntax xfer = dataSet.getCurrentXfer();
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1302 if (xfer == EXS_Unknown)
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1303 {
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1304 // No information about the original transfer syntax: This is
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1305 // most probably a DICOM dataset that was read from memory.
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1306 xfer = EXS_LittleEndianExplicit;
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1307 }
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1308
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1309 // Create the meta-header information
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1310 DcmFileFormat ff(&dataSet);
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1311 ff.validateMetaInfo(xfer);
1316
1c8dfedefefe Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1307
diff changeset
1312 ff.removeInvalidGroups();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1313
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1314 return SaveToMemoryBufferInternal(buffer, ff, xfer);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1315 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1316
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1317
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1318 bool FromDcmtkBridge::Transcode(DcmFileFormat& dicom,
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1319 DicomTransferSyntax syntax,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1320 const DcmRepresentationParameter* representation)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1321 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1322 E_TransferSyntax xfer;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1323 if (!LookupDcmtkTransferSyntax(xfer, syntax))
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1324 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1325 throw OrthancException(ErrorCode_InternalError);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1326 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1327 else
3885
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1328 {
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1329 DicomTransferSyntax sourceSyntax;
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1330 bool known = LookupOrthancTransferSyntax(sourceSyntax, dicom);
3922
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1331
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1332 if (!dicom.chooseRepresentation(xfer, representation).good() ||
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1333 !dicom.canWriteXfer(xfer) ||
3811
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1334 !dicom.validateMetaInfo(xfer, EWM_updateMeta).good())
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1335 {
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1336 return false;
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1337 }
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1338 else
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1339 {
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1340 dicom.removeInvalidGroups();
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1341
3885
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1342 if (known)
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1343 {
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1344 LOG(INFO) << "Transcoded an image from transfer syntax "
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1345 << GetTransferSyntaxUid(sourceSyntax) << " to "
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1346 << GetTransferSyntaxUid(syntax);
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1347 }
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1348 else
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1349 {
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1350 LOG(INFO) << "Transcoded an image from unknown transfer syntax to "
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1351 << GetTransferSyntaxUid(syntax);
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1352 }
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1353
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1354 return true;
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1355 }
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1356 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1357 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1358
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1359
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1360 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag)
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1361 {
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1362 DcmTag t(tag.GetGroup(), tag.GetElement());
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1363 return Convert(t.getEVR());
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1364 }
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1365
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1366 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr)
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1367 {
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1368 switch (vr)
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1369 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1370 case EVR_AE:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1371 return ValueRepresentation_ApplicationEntity;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1372
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1373 case EVR_AS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1374 return ValueRepresentation_AgeString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1375
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1376 case EVR_AT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1377 return ValueRepresentation_AttributeTag;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1378
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1379 case EVR_CS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1380 return ValueRepresentation_CodeString;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1381
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1382 case EVR_DA:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1383 return ValueRepresentation_Date;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1384
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1385 case EVR_DS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1386 return ValueRepresentation_DecimalString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1387
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1388 case EVR_DT:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1389 return ValueRepresentation_DateTime;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1390
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1391 case EVR_FL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1392 return ValueRepresentation_FloatingPointSingle;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1393
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1394 case EVR_FD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1395 return ValueRepresentation_FloatingPointDouble;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1396
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1397 case EVR_IS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1398 return ValueRepresentation_IntegerString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1399
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1400 case EVR_LO:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1401 return ValueRepresentation_LongString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1402
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1403 case EVR_LT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1404 return ValueRepresentation_LongText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1405
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1406 case EVR_OB:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1407 return ValueRepresentation_OtherByte;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1408
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1409 #if DCMTK_VERSION_NUMBER >= 361
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1410 case EVR_OD:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1411 return ValueRepresentation_OtherDouble;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1412 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1413
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1414 case EVR_OF:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1415 return ValueRepresentation_OtherFloat;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1416
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1417 #if DCMTK_VERSION_NUMBER >= 362
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1418 case EVR_OL:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1419 return ValueRepresentation_OtherLong;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1420 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1421
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1422 case EVR_OW:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1423 return ValueRepresentation_OtherWord;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1424
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1425 case EVR_PN:
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1426 return ValueRepresentation_PersonName;
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1427
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1428 case EVR_SH:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1429 return ValueRepresentation_ShortString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1430
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1431 case EVR_SL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1432 return ValueRepresentation_SignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1433
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1434 case EVR_SQ:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1435 return ValueRepresentation_Sequence;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1436
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1437 case EVR_SS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1438 return ValueRepresentation_SignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1439
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1440 case EVR_ST:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1441 return ValueRepresentation_ShortText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1442
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1443 case EVR_TM:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1444 return ValueRepresentation_Time;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1445
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1446 #if DCMTK_VERSION_NUMBER >= 361
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1447 case EVR_UC:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1448 return ValueRepresentation_UnlimitedCharacters;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1449 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1450
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1451 case EVR_UI:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1452 return ValueRepresentation_UniqueIdentifier;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1453
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1454 case EVR_UL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1455 return ValueRepresentation_UnsignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1456
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1457 case EVR_UN:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1458 return ValueRepresentation_Unknown;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1459
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1460 #if DCMTK_VERSION_NUMBER >= 361
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1461 case EVR_UR:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1462 return ValueRepresentation_UniversalResource;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1463 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1464
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1465 case EVR_US:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1466 return ValueRepresentation_UnsignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1467
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1468 case EVR_UT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1469 return ValueRepresentation_UnlimitedText;
1792
b769623c806c safety check
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1765
diff changeset
1470
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1471 default:
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1472 return ValueRepresentation_NotSupported;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1473 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1474 }
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1475
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1476
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1477 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1478 const std::string& privateCreator)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1479 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1480 if (tag.IsPrivate() &&
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1481 privateCreator.empty())
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1482 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1483 // This solves issue 140 (Modifying private tags with REST API
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1484 // changes VR from LO to UN)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1485 // https://bitbucket.org/sjodogne/orthanc/issues/140
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1486 LOG(WARNING) << "Private creator should not be empty while creating a private tag: " << tag.Format();
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1487 }
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1488
3692
fd302ec6a502 fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1489 #if DCMTK_VERSION_NUMBER >= 362
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1490 DcmTag key(tag.GetGroup(), tag.GetElement());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1491 if (tag.IsPrivate())
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1492 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1493 return DcmItem::newDicomElement(key, privateCreator.c_str());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1494 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1495 else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1496 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1497 return DcmItem::newDicomElement(key, NULL);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1498 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1499
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1500 #else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1501 DcmTag key(tag.GetGroup(), tag.GetElement());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1502 if (tag.IsPrivate())
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1503 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1504 // https://forum.dcmtk.org/viewtopic.php?t=4527
3708
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3692
diff changeset
1505 LOG(WARNING) << "You are using DCMTK <= 3.6.1: All the private tags "
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1506 "are considered as having a binary value representation";
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1507 key.setPrivateCreator(privateCreator.c_str());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1508 return new DcmOtherByteOtherWord(key);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1509 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1510 else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1511 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1512 return newDicomElement(key);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1513 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1514 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1515 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1516
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1517
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1518
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1519 void FromDcmtkBridge::FillElementWithString(DcmElement& element,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1520 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1521 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1522 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1523 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1524 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1525 const std::string* decoded = &utf8Value;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1526
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1527 if (decodeDataUriScheme &&
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2831
diff changeset
1528 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1529 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1530 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1531 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1532 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1533 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1534 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1535
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1536 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1537 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1538 else if (dicomEncoding != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1539 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1540 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1541 decoded = &binary;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1542 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1543
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1544 if (IsBinaryTag(element.getTag()))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1545 {
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1546 bool ok;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1547
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1548 switch (element.getTag().getEVR())
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1549 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1550 case EVR_OW:
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1551 if (decoded->size() % sizeof(Uint16) != 0)
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1552 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1553 LOG(ERROR) << "A tag with OW VR must have an even number of bytes";
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1554 ok = false;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1555 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1556 else
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1557 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1558 ok = element.putUint16Array((const Uint16*) decoded->c_str(), decoded->size() / sizeof(Uint16)).good();
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1559 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1560
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1561 break;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1562
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1563 default:
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1564 ok = element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good();
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1565 break;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1566 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1567
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1568 if (ok)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1569 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1570 return;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1571 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1572 else
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1573 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1574 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1575 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1576 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1577
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1578 bool ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1579
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1580 try
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1581 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1582 switch (element.getTag().getEVR())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1583 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1584 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1585
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1586 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1587 * TODO.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1588 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1589
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1590 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1591 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1592 case EVR_AT: // attribute tag
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1593 throw OrthancException(ErrorCode_NotImplemented);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1594
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1595 case EVR_UN: // unknown value representation
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1596 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1597
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1598
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1599 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1600 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1601 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1602
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1603 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1604 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1605 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1606 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1607 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1608 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1609 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1610 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1611 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1612 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1613 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1614 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1615 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1616 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1617 case EVR_UI: // unique identifier
3209
f6374c36a671 documentation of DICOMweb in SDK, compatibility with DCMTK 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3199
diff changeset
1618 #if DCMTK_VERSION_NUMBER >= 361
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1619 case EVR_UC: // unlimited characters
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1620 case EVR_UR: // URI/URL
3209
f6374c36a671 documentation of DICOMweb in SDK, compatibility with DCMTK 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3199
diff changeset
1621 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1622 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1623 ok = element.putString(decoded->c_str()).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1624 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1625 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1626
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1627
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1628 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1629 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1630 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1631
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1632 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1633 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1634 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1635 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1636 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1637
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1638 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1639 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1640 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1641 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1642 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1643
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1644 case EVR_UL: // unsigned long
3692
fd302ec6a502 fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1645 #if DCMTK_VERSION_NUMBER >= 362
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1646 case EVR_OL: // other long (requires byte-swapping)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1647 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1648 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1649 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1650 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1651 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1652
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1653 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1654 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1655 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1656 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1657 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1658
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1659 case EVR_FL: // float single-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1660 case EVR_OF: // other float (requires byte swapping)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1661 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1662 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1663 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1664 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1665
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1666 case EVR_FD: // float double-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1667 #if DCMTK_VERSION_NUMBER >= 361
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1668 case EVR_OD: // other double (requires byte-swapping)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1669 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1670 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1671 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1672 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1673 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1674
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1675
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1676 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1677 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1678 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1679
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1680 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1681 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1682 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1683 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1684 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1685
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1686
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1687 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1688 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1689 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1690
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1691 case EVR_ox: // OB or OW depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1692 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1693 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1694 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1695 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1696 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1697 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1698 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1699 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1700 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1701 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1702 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1703 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1704 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1705 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1706 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1707 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1708 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1709 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1710 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1711 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1712 catch (boost::bad_lexical_cast&)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1713 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1714 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1715 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1716
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1717 if (!ok)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1718 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1719 DicomTag tag(element.getTag().getGroup(), element.getTag().getElement());
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1720 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1721 "While creating a DICOM instance, tag (" + tag.Format() +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1722 ") has out-of-range value: \"" + (*decoded) + "\"");
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1723 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1724 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1725
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1726
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1727 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1728 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1729 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1730 Encoding dicomEncoding,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1731 const std::string& privateCreator)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1732 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1733 std::unique_ptr<DcmElement> element;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1734
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1735 switch (value.type())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1736 {
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1737 case Json::stringValue:
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1738 element.reset(CreateElementForTag(tag, privateCreator));
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1739 FillElementWithString(*element, value.asString(), decodeDataUriScheme, dicomEncoding);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1740 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1741
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1742 case Json::nullValue:
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1743 element.reset(CreateElementForTag(tag, privateCreator));
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1744 FillElementWithString(*element, "", decodeDataUriScheme, dicomEncoding);
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1745 break;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1746
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1747 case Json::arrayValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1748 {
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1749 const char* p = NULL;
4016
c675d77b82ab fix creation of sequence in private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4007
diff changeset
1750 if (tag.IsPrivate() &&
c675d77b82ab fix creation of sequence in private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4007
diff changeset
1751 !privateCreator.empty())
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1752 {
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1753 p = privateCreator.c_str();
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1754 }
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1755
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1756 DcmTag key(tag.GetGroup(), tag.GetElement(), p);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1757 if (key.getEVR() != EVR_SQ)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1758 {
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1759 throw OrthancException(ErrorCode_BadParameterType,
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1760 "Bad Parameter type for tag " + tag.Format());
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1761 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1762
2287
9f3414878c02 Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2275
diff changeset
1763 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1764 element.reset(sequence);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1765
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1766 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1767 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1768 std::unique_ptr<DcmItem> item(new DcmItem);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1769
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1770 switch (value[i].type())
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1771 {
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1772 case Json::objectValue:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1773 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1774 Json::Value::Members members = value[i].getMemberNames();
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1775 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1776 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1777 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding, privateCreator));
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1778 }
2831
b51233f03e7e missing break
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2830
diff changeset
1779 break;
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1780 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1781
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1782 case Json::arrayValue:
2831
b51233f03e7e missing break
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2830
diff changeset
1783 {
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1784 // Lua cannot disambiguate between an empty dictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1785 // and an empty array
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1786 if (value[i].size() != 0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1787 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1788 throw OrthancException(ErrorCode_BadParameterType);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1789 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1790 break;
2831
b51233f03e7e missing break
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2830
diff changeset
1791 }
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1792
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1793 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1794 throw OrthancException(ErrorCode_BadParameterType);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1795 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1796
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1797 sequence->append(item.release());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1798 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1799
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1800 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1801 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1802
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1803 default:
3895
37cf1889667a more explicit error message
Alain Mazy <alain@mazy.be>
parents: 3811
diff changeset
1804 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format());
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1805 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1806
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1807 return element.release();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1808 }
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1809
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1810
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1811 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1812 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1813 DcmElement *element = NULL;
1927
b60f27664b8f simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1814 if (!dataset.findAndGetElement(DCM_PixelData, element).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1815 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1816 throw OrthancException(ErrorCode_BadFileFormat);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1817 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1818
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1819 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
3922
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1820
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1821 E_TransferSyntax repType;
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1822 const DcmRepresentationParameter *repParam = NULL;
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1823 pixelData.getCurrentRepresentationKey(repType, repParam);
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1824
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1825 DcmPixelSequence* pixelSequence = NULL;
3922
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1826 if (!pixelData.getEncapsulatedRepresentation(repType, repParam, pixelSequence).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1827 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1828 return NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1829 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1830 else
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1831 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1832 return pixelSequence;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1833 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1834 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1835
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1836
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1837 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1838 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1839 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1840 if (json.type() != Json::objectValue)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1841 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1842 throw OrthancException(ErrorCode_BadParameterType);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1843 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1844
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1845 Encoding encoding = defaultEncoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1846
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1847 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1848
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1849 // Look for SpecificCharacterSet (0008,0005) in the JSON file
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1850 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1851 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1852 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1853 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1854 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1855 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1856 if (value.type() != Json::stringValue ||
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1857 (value.asString().length() != 0 &&
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1858 !GetDicomEncoding(encoding, value.asCString())))
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1859 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1860 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1861 "Unknown encoding while creating DICOM from JSON: " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1862 value.toStyledString());
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1863 }
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1864
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1865 if (value.asString().length() == 0)
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1866 {
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1867 return defaultEncoding;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1868 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1869 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1870 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1871
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1872 return encoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1873 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1874
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1875
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1876 static void SetString(DcmDataset& target,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1877 const DcmTag& tag,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1878 const std::string& value)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1879 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1880 if (!target.putAndInsertString(tag, value.c_str()).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1881 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1882 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1883 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1884 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1885
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1886
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1887 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1888 bool generateIdentifiers,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1889 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1890 Encoding defaultEncoding,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1891 const std::string& privateCreator)
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1892 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1893 std::unique_ptr<DcmDataset> result(new DcmDataset);
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1894 Encoding encoding = ExtractEncoding(json, defaultEncoding);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1895
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1896 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1897
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1898 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1899
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1900 bool hasPatientId = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1901 bool hasStudyInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1902 bool hasSeriesInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1903 bool hasSopInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1904
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1905 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1906 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1907 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1908 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1909
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1910 if (tag == DICOM_TAG_PATIENT_ID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1911 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1912 hasPatientId = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1913 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1914 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1915 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1916 hasStudyInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1917 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1918 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1919 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1920 hasSeriesInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1921 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1922 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1923 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1924 hasSopInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1925 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1926
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1927 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1928 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1929 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator));
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
1930
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
1931 result->findAndDeleteElement(element->getTag());
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1932
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1933 DcmElement* tmp = element.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1934 if (!result->insert(tmp, false, false).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1935 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1936 delete tmp;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1937 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1938 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1939 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1940 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1941
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1942 if (!hasPatientId &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1943 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1944 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1945 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1946 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1947
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1948 if (!hasStudyInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1949 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1950 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1951 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1952 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1953
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1954 if (!hasSeriesInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1955 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1956 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1957 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1958 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1959
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1960 if (!hasSopInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1961 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1962 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1963 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1964 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1965
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1966 return result.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1967 }
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1968
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1969
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1970 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer,
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1971 size_t size)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1972 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1973 DcmInputBufferStream is;
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1974 if (size > 0)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1975 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1976 is.setBuffer(buffer, size);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1977 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1978 is.setEos();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1979
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1980 std::unique_ptr<DcmFileFormat> result(new DcmFileFormat);
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1981
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1982 result->transferInit();
3771
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1983
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1984 /**
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1985 * New in Orthanc 1.6.0: The "size" is given as an argument to the
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1986 * "read()" method. This can avoid huge memory consumption if
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1987 * parsing an invalid DICOM file, which can notably been observed
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1988 * by executing the integration test "test_upload_compressed" on
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1989 * valgrind running Orthanc.
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1990 **/
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
1991 if (!result->read(is, EXS_Unknown, EGL_noChange, size).good())
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1992 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1993 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1994 "Cannot parse an invalid DICOM file (size: " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1995 boost::lexical_cast<std::string>(size) + " bytes)");
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1996 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1997
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1998 result->loadAllDataIntoMemory();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1999 result->transferEnd();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2000
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2001 return result.release();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2002 }
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2003
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2004
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2005 void FromDcmtkBridge::FromJson(DicomMap& target,
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2006 const Json::Value& source)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2007 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2008 if (source.type() != Json::objectValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2009 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2010 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2011 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2012
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2013 target.Clear();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2014
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2015 Json::Value::Members members = source.getMemberNames();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2016
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2017 for (size_t i = 0; i < members.size(); i++)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2018 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2019 const Json::Value& value = source[members[i]];
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2020
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2021 if (value.type() != Json::stringValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2022 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2023 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2024 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2025
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
2026 target.SetValue(ParseTag(members[i]), value.asString(), false);
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2027 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2028 }
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2029
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2030
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2031 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset,
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2032 Encoding source,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2033 bool hasSourceCodeExtensions,
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2034 Encoding target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2035 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2036 // Recursive exploration of a dataset to change the encoding of
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2037 // each string-like element
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2038
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2039 if (source == target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2040 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2041 return;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2042 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2043
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2044 for (unsigned long i = 0; i < dataset.card(); i++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2045 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2046 DcmElement* element = dataset.getElement(i);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2047 if (element)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2048 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2049 if (element->isLeaf())
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2050 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2051 char *c = NULL;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2052 if (element->isaString() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2053 element->getString(c).good() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2054 c != NULL)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2055 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2056 std::string a = Toolbox::ConvertToUtf8(c, source, hasSourceCodeExtensions);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2057 std::string b = Toolbox::ConvertFromUtf8(a, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2058 element->putString(b.c_str());
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2059 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2060 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2061 else
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2062 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2063 // "All subclasses of DcmElement except for DcmSequenceOfItems
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2064 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2065 // etc. are not." The following dynamic_cast is thus OK.
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2066 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2067
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2068 for (unsigned long j = 0; j < sequence.card(); j++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2069 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2070 ChangeStringEncoding(*sequence.getItem(j), source, hasSourceCodeExtensions, target);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2071 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2072 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2073 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2074 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2075 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2076
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2077
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2078 void FromDcmtkBridge::InitializeCodecs()
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2079 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2080 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
2528
832217e4e872 old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2522
diff changeset
2081 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK";
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2082 DJLSDecoderRegistration::registerCodecs();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2083 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2084 DJLSEncoderRegistration::registerCodecs();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2085 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2086 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2087
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2088 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
2528
832217e4e872 old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2522
diff changeset
2089 LOG(INFO) << "Registering JPEG codecs in DCMTK";
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2090 DJDecoderRegistration::registerCodecs();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2091 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2092 DJEncoderRegistration::registerCodecs();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2093 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2094 #endif
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2095
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2096 LOG(INFO) << "Registering RLE codecs in DCMTK";
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2097 DcmRLEDecoderRegistration::registerCodecs();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2098 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2099 DcmRLEEncoderRegistration::registerCodecs();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2100 #endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2101 }
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2102
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2103
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2104 void FromDcmtkBridge::FinalizeCodecs()
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2105 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2106 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2107 // Unregister JPEG-LS codecs
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2108 DJLSDecoderRegistration::cleanup();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2109 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2110 DJLSEncoderRegistration::cleanup();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2111 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2112 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2113
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2114 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2115 // Unregister JPEG codecs
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2116 DJDecoderRegistration::cleanup();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2117 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
3743
33c19a6643e1 creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3730
diff changeset
2118 DJEncoderRegistration::cleanup();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2119 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2120 #endif
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2121
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2122 DcmRLEDecoderRegistration::cleanup();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2123 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2124 DcmRLEEncoderRegistration::cleanup();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2125 #endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2126 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2127
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2128
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2129
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2130 // Forward declaration
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2131 static void ApplyVisitorToElement(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2132 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2133 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2134 const std::vector<size_t>& parentIndexes,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2135 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2136 bool hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2137
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2138 static void ApplyVisitorToDataset(DcmItem& dataset,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2139 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2140 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2141 const std::vector<size_t>& parentIndexes,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2142 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2143 bool hasCodeExtensions)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2144 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2145 assert(parentTags.size() == parentIndexes.size());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2146
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2147 for (unsigned long i = 0; i < dataset.card(); i++)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2148 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2149 DcmElement* element = dataset.getElement(i);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2150 if (element == NULL)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2151 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2152 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2153 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2154 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2155 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2156 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2157 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2158 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2159 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2160
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2161
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2162 static void ApplyVisitorToLeaf(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2163 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2164 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2165 const std::vector<size_t>& parentIndexes,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2166 const DicomTag& tag,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2167 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2168 bool hasCodeExtensions)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2169 {
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2170 // TODO - Merge this function, that is more recent, with ConvertLeafElement()
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2171
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2172 assert(element.isLeaf());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2173
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2174 DcmEVR evr = element.getTag().getEVR();
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2175
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2176
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2177 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2178 * Fix the EVR for types internal to DCMTK
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2179 **/
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2180
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2181 if (evr == EVR_ox) // OB or OW depending on context
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2182 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2183 evr = EVR_OB;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2184 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2185
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2186 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2187 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2188 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2189 evr = EVR_UN;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2190 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2191
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2192 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2193
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2194
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2195 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2196 * Deal with binary data (including PixelData).
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2197 **/
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2199 if (evr == EVR_OB || // other byte
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2200 evr == EVR_OW || // other word
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2201 evr == EVR_UN) // unknown value representation
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2202 {
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2203 Uint16* data16 = NULL;
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2204 Uint8* data = NULL;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2205
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2206 if (evr == EVR_OW &&
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2207 element.getUint16Array(data16) == EC_Normal)
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2208 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2209 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data16, element.getLength());
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2210 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2211 else if (evr != EVR_OW &&
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2212 element.getUint8Array(data) == EC_Normal)
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2213 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2214 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength());
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2215 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2216 else
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2217 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2218 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2219 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2220
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2221 return; // We're done
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2222 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2223
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2224
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2225 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2226 * Deal with plain strings (and convert them to UTF-8)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2227 **/
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2228
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2229 char *c = NULL;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2230 if (element.isaString() &&
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2231 element.getString(c).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2232 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2233 std::string utf8;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2234
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2235 if (c != NULL) // This case corresponds to the empty string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2236 {
3448
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2237 if (element.getTag() == DCM_SpecificCharacterSet)
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2238 {
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2239 utf8.assign(c);
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2240 }
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2241 else
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2242 {
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2243 std::string s(c);
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2244 utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions);
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2245 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2246 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2247
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2248 std::string newValue;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2249 ITagVisitor::Action action = visitor.VisitString
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2250 (newValue, parentTags, parentIndexes, tag, vr, utf8);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2251
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2252 switch (action)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2253 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2254 case ITagVisitor::Action_None:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2255 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2256
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2257 case ITagVisitor::Action_Replace:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2258 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2259 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding);
2522
ce2dfba9417c fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2513
diff changeset
2260 if (element.putString(s.c_str()) != EC_Normal)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2261 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2262 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2263 "Cannot replace value of tag: " + tag.Format());
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2264 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2265
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2266 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2267 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2268
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2269 default:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2270 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2271 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2272
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2273 return; // We're done
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2274 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2275
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2276
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2277 try
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2278 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2279 // http://support.dcmtk.org/docs/dcvr_8h-source.html
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2280 switch (evr)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2281 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2282
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2283 /**
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2284 * Plain string values.
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2285 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2286
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2287 case EVR_DS: // decimal string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2288 case EVR_IS: // integer string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2289 case EVR_AS: // age string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2290 case EVR_DA: // date string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2291 case EVR_DT: // date time string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2292 case EVR_TM: // time string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2293 case EVR_AE: // application entity title
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2294 case EVR_CS: // code string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2295 case EVR_SH: // short string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2296 case EVR_LO: // long string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2297 case EVR_ST: // short text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2298 case EVR_LT: // long text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2299 case EVR_UT: // unlimited text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2300 case EVR_PN: // person name
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2301 case EVR_UI: // unique identifier
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2302 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2303 Uint8* data = NULL;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2304
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2305 if (element.getUint8Array(data) == EC_Normal)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2306 {
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2307 const Uint32 length = element.getLength();
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2308 Uint32 l = 0;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2309 while (l < length &&
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2310 data[l] != 0)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2311 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2312 l++;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2313 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2314
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2315 if (l == length)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2316 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2317 // Not a null-terminated plain string
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2318 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2319 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2320 else
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2321 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2322 std::string ignored;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2323 std::string s(reinterpret_cast<const char*>(data), l);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2324 ITagVisitor::Action action = visitor.VisitString
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2325 (ignored, parentTags, parentIndexes, tag, vr,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2326 Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions));
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2327
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2328 if (action != ITagVisitor::Action_None)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2329 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2330 LOG(WARNING) << "Cannot replace this string tag: "
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2331 << FromDcmtkBridge::GetTagName(element)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2332 << " (" << tag.Format() << ")";
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2333 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2334 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2335 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2336 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2337 {
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2338 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2339 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2340
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2341 return;
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2342 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2343
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2344 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2345 * Numeric types
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2346 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2347
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2348 case EVR_SL: // signed long
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2349 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2350 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2351
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2352 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2353 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2354
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2355 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2356 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2357 Sint32 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2358 if (content.getSint32(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2359 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2360 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2361 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2362 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2363
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2364 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2365 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2366 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2367
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2368 case EVR_SS: // signed short
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2369 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2370 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2371
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2372 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2373 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2374
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2375 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2376 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2377 Sint16 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2378 if (content.getSint16(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2379 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2380 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2381 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2382 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2383
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2384 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2385 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2386 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2387
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2388 case EVR_UL: // unsigned long
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2389 #if DCMTK_VERSION_NUMBER >= 362
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2390 case EVR_OL:
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2391 #endif
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2392 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2393 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2394
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2395 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2396 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2397
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2398 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2399 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2400 Uint32 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2401 if (content.getUint32(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2402 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2403 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2404 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2405 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2406
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2407 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2408 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2409 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2410
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2411 case EVR_US: // unsigned short
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2412 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2413 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2414
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2415 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2416 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2417
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2418 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2419 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2420 Uint16 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2421 if (content.getUint16(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2422 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2423 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2424 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2425 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2426
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2427 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2428 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2429 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2430
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2431 case EVR_FL: // float single-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2432 case EVR_OF:
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2433 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2434 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2435
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2436 std::vector<double> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2437 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2438
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2439 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2440 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2441 Float32 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2442 if (content.getFloat32(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2443 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2444 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2445 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2446 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2447
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2448 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2449 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2450 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2451
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2452 case EVR_FD: // float double-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2453 #if DCMTK_VERSION_NUMBER >= 361
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2454 case EVR_OD:
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2455 #endif
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2456 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2457 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2458
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2459 std::vector<double> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2460 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2461
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2462 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2463 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2464 Float64 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2465 if (content.getFloat64(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2466 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2467 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2468 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2469 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2470
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2471 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2472 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2473 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2474
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2475
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2476 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2477 * Attribute tag.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2478 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2479
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2480 case EVR_AT:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2481 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2482 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2483
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2484 std::vector<DicomTag> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2485 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2486
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2487 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2488 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2489 DcmTagKey f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2490 if (content.getTagVal(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2491 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2492 DicomTag t(f.getGroup(), f.getElement());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2493 values.push_back(t);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2494 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2495 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2496
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2497 assert(vr == ValueRepresentation_AttributeTag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2498 visitor.VisitAttributes(parentTags, parentIndexes, tag, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2499 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2500 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2501
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2502
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2503 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2504 * Sequence types, should never occur at this point because of
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2505 * "element.isLeaf()".
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2506 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2507
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2508 case EVR_SQ: // sequence of items
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2509 {
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2510 return;
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2511 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2512
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2513
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2514 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2515 * Internal to DCMTK.
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2516 **/
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2517
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2518 case EVR_xs: // SS or US depending on context
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2519 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2520 case EVR_na: // na="not applicable", for data which has no VR
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2521 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2522 case EVR_item: // used internally for items
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2523 case EVR_metainfo: // used internally for meta info datasets
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2524 case EVR_dataset: // used internally for datasets
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2525 case EVR_fileFormat: // used internally for DICOM files
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2526 case EVR_dicomDir: // used internally for DICOMDIR objects
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2527 case EVR_dirRecord: // used internally for DICOMDIR records
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2528 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2529 case EVR_pixelItem: // used internally for pixel items in a compressed image
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2530 case EVR_PixelData: // used internally for uncompressed pixeld data
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2531 case EVR_OverlayData: // used internally for overlay data
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2532 {
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2533 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2534 return;
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2535 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2536
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2537
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2538 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2539 * Default case.
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2540 **/
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2541
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2542 default:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2543 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2544 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2545 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2546 catch (boost::bad_lexical_cast&)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2547 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2548 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2549 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2550 catch (std::bad_cast&)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2551 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2552 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2553 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2554 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2555
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2556
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2557 static void ApplyVisitorToElement(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2558 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2559 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2560 const std::vector<size_t>& parentIndexes,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2561 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2562 bool hasCodeExtensions)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2563 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2564 assert(parentTags.size() == parentIndexes.size());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2565
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2566 DicomTag tag(FromDcmtkBridge::Convert(element.getTag()));
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2567
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2568 if (element.isLeaf())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2569 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2570 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding, hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2571 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2572 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2573 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2574 // "All subclasses of DcmElement except for DcmSequenceOfItems
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2575 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2576 // etc. are not." The following dynamic_cast is thus OK.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2577 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2578
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2579 if (sequence.card() == 0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2580 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2581 visitor.VisitEmptySequence(parentTags, parentIndexes, tag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2582 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2583 else
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2584 {
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2585 std::vector<DicomTag> tags = parentTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2586 std::vector<size_t> indexes = parentIndexes;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2587 tags.push_back(tag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2588 indexes.push_back(0);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2589
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2590 for (unsigned long i = 0; i < sequence.card(); i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2591 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2592 indexes.back() = static_cast<size_t>(i);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2593 DcmItem* child = sequence.getItem(i);
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2594 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding, hasCodeExtensions);
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2595 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2596 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2597 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2598 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2599
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2600
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2601 void FromDcmtkBridge::Apply(DcmItem& dataset,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2602 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2603 Encoding defaultEncoding)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2604 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2605 std::vector<DicomTag> parentTags;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2606 std::vector<size_t> parentIndexes;
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2607 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2608 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2609 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2610 }
3882
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2611
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2612
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2613
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2614 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target,
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2615 DcmFileFormat& dicom)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2616 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2617 if (dicom.getDataset() == NULL)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2618 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2619 throw OrthancException(ErrorCode_InternalError);
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2620 }
4334
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2621 else
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2622 {
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2623 return LookupOrthancTransferSyntax(target, *dicom.getDataset());
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2624 }
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2625 }
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2626
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2627
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2628 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target,
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2629 DcmDataset& dataset)
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2630 {
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
2631 E_TransferSyntax xfer = dataset.getCurrentXfer();
3882
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2632 if (xfer == EXS_Unknown)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2633 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2634 dataset.updateOriginalXfer();
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2635 xfer = dataset.getOriginalXfer();
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2636 if (xfer == EXS_Unknown)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2637 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2638 throw OrthancException(ErrorCode_BadFileFormat,
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2639 "Cannot determine the transfer syntax of the DICOM instance");
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2640 }
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2641 }
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2642
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2643 return FromDcmtkBridge::LookupOrthancTransferSyntax(target, xfer);
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2644 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2645 }
3730
ae31ba2b09a6 toolbox: LookupTransferSyntax()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3727
diff changeset
2646
ae31ba2b09a6 toolbox: LookupTransferSyntax()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3727
diff changeset
2647
ae31ba2b09a6 toolbox: LookupTransferSyntax()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3727
diff changeset
2648 #include "./FromDcmtkBridge_TransferSyntaxes.impl.h"