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annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 5122:8638522eeda1

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revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 19 Dec 2022 15:46:33 +0100
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #pragma once
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25
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26 #include "ParsedDicomFile.h"
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27
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28 #include <list>
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29
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30
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31 namespace Orthanc
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32 {
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33 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable
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34 {
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35 /**
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36 * Process:
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37 * (1) Remove private tags
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38 * (2) Remove tags specified by the user
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39 * (3) Replace tags
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40 **/
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41
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42 public:
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43 class IDicomIdentifierGenerator : public boost::noncopyable
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44 {
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45 public:
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46 virtual ~IDicomIdentifierGenerator()
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47 {
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48 }
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49
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50 virtual bool Apply(std::string& target,
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51 const std::string& sourceIdentifier,
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52 ResourceType level,
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53 const DicomMap& sourceDicom) = 0;
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54 };
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55
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56 private:
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57 class RelationshipsVisitor;
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58
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59 class DicomTagRange
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60 {
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61 private:
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62 uint16_t groupFrom_;
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63 uint16_t groupTo_;
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64 uint16_t elementFrom_;
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65 uint16_t elementTo_;
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66
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67 public:
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68 DicomTagRange(uint16_t groupFrom,
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69 uint16_t groupTo,
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70 uint16_t elementFrom,
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71 uint16_t elementTo);
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72
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73 uint16_t GetGroupFrom() const
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74 {
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75 return groupFrom_;
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76 }
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77
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78 uint16_t GetGroupTo() const
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79 {
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80 return groupTo_;
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81 }
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82
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83 uint16_t GetElementFrom() const
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84 {
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85 return elementFrom_;
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86 }
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87
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88 uint16_t GetElementTo() const
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89 {
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90 return elementTo_;
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91 }
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92
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93 bool Contains(const DicomTag& tag) const;
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94 };
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96 class SequenceReplacement : public boost::noncopyable
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97 {
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98 private:
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99 DicomPath path_;
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100 Json::Value value_;
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101
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102 public:
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103 SequenceReplacement(const DicomPath& path,
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104 const Json::Value& value) :
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105 path_(path),
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106 value_(value)
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107 {
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108 }
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109
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110 const DicomPath& GetPath() const
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111 {
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112 return path_;
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113 }
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114
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115 const Json::Value& GetValue() const
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116 {
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117 return value_;
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118 }
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119 };
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120
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121 typedef std::set<DicomTag> SetOfTags;
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122 typedef std::map<DicomTag, Json::Value*> Replacements;
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123 typedef std::list<DicomTagRange> RemovedRanges;
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124 typedef std::list<DicomPath> ListOfPaths;
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125 typedef std::list<SequenceReplacement*> SequenceReplacements;
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126
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127 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap;
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128
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129 SetOfTags removals_;
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130 SetOfTags clearings_;
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131 Replacements replacements_;
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132 bool removePrivateTags_;
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133 ResourceType level_;
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134 UidMap uidMap_;
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135 SetOfTags privateTagsToKeep_;
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136 bool allowManualIdentifiers_;
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137 bool keepStudyInstanceUid_;
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138 bool keepSeriesInstanceUid_;
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139 bool keepSopInstanceUid_;
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140 bool updateReferencedRelationships_;
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141 bool isAnonymization_;
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142 DicomMap currentSource_;
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143 std::string privateCreator_;
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144
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145 IDicomIdentifierGenerator* identifierGenerator_;
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146
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147 // New in Orthanc 1.9.4
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148 SetOfTags uids_;
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149 RemovedRanges removedRanges_;
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150 ListOfPaths keepSequences_; // Can *possibly* be a path whose prefix is empty
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151 ListOfPaths removeSequences_; // Must *never* be a path whose prefix is empty
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152 SequenceReplacements sequenceReplacements_; // Must *never* be a path whose prefix is empty
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153
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154 std::string MapDicomIdentifier(const std::string& original,
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155 ResourceType level);
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156
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157 void RegisterMappedDicomIdentifier(const std::string& original,
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158 const std::string& mapped,
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159 ResourceType level);
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160
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161 void MapDicomTags(ParsedDicomFile& dicom,
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162 ResourceType level);
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163
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164 void MarkNotOrthancAnonymization();
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165
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166 void ClearReplacements();
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167
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168 void CancelReplacement(const DicomTag& tag);
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169
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170 void ReplaceInternal(const DicomTag& tag,
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171 const Json::Value& value);
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172
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173 void SetupUidsFromOrthanc_1_9_3();
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174
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175 void SetupAnonymization2008();
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176
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177 void SetupAnonymization2017c();
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178
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179 void SetupAnonymization2021b();
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180
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181 void UnserializeUidMap(ResourceType level,
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182 const Json::Value& serialized,
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183 const char* field);
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184
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185 public:
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186 DicomModification();
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187
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188 explicit DicomModification(const Json::Value& serialized);
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189
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190 ~DicomModification();
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191
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192 void Keep(const DicomTag& tag);
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193
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194 void Remove(const DicomTag& tag);
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195
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196 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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197 void Clear(const DicomTag& tag);
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198
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199 bool IsRemoved(const DicomTag& tag) const;
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200
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201 bool IsCleared(const DicomTag& tag) const;
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202
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203 // "safeForAnonymization" tells Orthanc that this replacement does
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204 // not break the anonymization process it implements (for internal use only)
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205 void Replace(const DicomTag& tag,
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206 const Json::Value& value, // Encoded using UTF-8
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207 bool safeForAnonymization);
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208
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209 bool IsReplaced(const DicomTag& tag) const;
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210
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211 const Json::Value& GetReplacement(const DicomTag& tag) const;
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212
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213 std::string GetReplacementAsString(const DicomTag& tag) const;
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214
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215 void SetRemovePrivateTags(bool removed);
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216
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217 bool ArePrivateTagsRemoved() const;
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218
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219 void SetLevel(ResourceType level);
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220
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221 ResourceType GetLevel() const;
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222
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223 void SetupAnonymization(DicomVersion version);
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224
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225 void Apply(ParsedDicomFile& toModify);
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226
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227 void SetAllowManualIdentifiers(bool check);
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229 bool AreAllowManualIdentifiers() const;
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230
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231 void ParseModifyRequest(const Json::Value& request);
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232
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233 // "patientNameOverridden" is set to "true" iff. the PatientName
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234 // (0010,0010) tag is manually replaced, removed, cleared or kept
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235 void ParseAnonymizationRequest(bool& patientNameOverridden /* out */,
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236 const Json::Value& request);
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237
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238 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator);
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239
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240 void Serialize(Json::Value& value) const;
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241
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242 void SetPrivateCreator(const std::string& privateCreator);
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243
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244 const std::string& GetPrivateCreator() const;
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245
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246 // New in Orthanc 1.9.4
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247 void Keep(const DicomPath& path);
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248
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249 // New in Orthanc 1.9.4
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250 void Remove(const DicomPath& path);
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251
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252 // New in Orthanc 1.9.4
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253 void Replace(const DicomPath& path,
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254 const Json::Value& value, // Encoded using UTF-8
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255 bool safeForAnonymization);
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256
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257 bool IsAlteredTag(const DicomTag& tag) const;
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258 };
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259 }