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annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4685:693f049729ba

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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 08 Jun 2021 18:28:57 +0200
parents e3810750dc9d
children 45bce660ce3a
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "ParsedDicomFile.h"
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26
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27 #include <list>
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28
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29
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30 namespace Orthanc
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31 {
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32 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable
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33 {
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34 /**
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35 * Process:
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36 * (1) Remove private tags
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37 * (2) Remove tags specified by the user
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38 * (3) Replace tags
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39 **/
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40
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41 public:
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42 enum TagOperation
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43 {
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44 TagOperation_Keep,
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45 TagOperation_Remove
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46 };
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47
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48 class IDicomIdentifierGenerator : public boost::noncopyable
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49 {
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50 public:
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51 virtual ~IDicomIdentifierGenerator()
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52 {
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53 }
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54
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55 virtual bool Apply(std::string& target,
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56 const std::string& sourceIdentifier,
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57 ResourceType level,
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58 const DicomMap& sourceDicom) = 0;
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59 };
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60
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61 private:
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62 class RelationshipsVisitor;
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63
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64 class DicomTagRange
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65 {
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66 private:
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67 uint16_t groupFrom_;
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68 uint16_t groupTo_;
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69 uint16_t elementFrom_;
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70 uint16_t elementTo_;
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71
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72 public:
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73 DicomTagRange(uint16_t groupFrom,
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74 uint16_t groupTo,
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75 uint16_t elementFrom,
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76 uint16_t elementTo);
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77
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78 uint16_t GetGroupFrom() const
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79 {
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80 return groupFrom_;
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81 }
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82
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83 uint16_t GetGroupTo() const
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84 {
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85 return groupTo_;
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86 }
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87
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88 uint16_t GetElementFrom() const
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89 {
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90 return elementFrom_;
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91 }
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92
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93 uint16_t GetElementTo() const
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94 {
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95 return elementTo_;
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96 }
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97
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98 bool Contains(const DicomTag& tag) const;
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99 };
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101 class SequenceReplacement : public boost::noncopyable
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102 {
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103 private:
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104 DicomPath path_;
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105 Json::Value value_;
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107 public:
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108 SequenceReplacement(const DicomPath& path,
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109 const Json::Value& value) :
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110 path_(path),
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111 value_(value)
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112 {
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113 }
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114
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115 const DicomPath& GetPath() const
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116 {
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117 return path_;
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118 }
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119
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120 const Json::Value& GetValue() const
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121 {
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122 return value_;
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123 }
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124 };
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125
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126 typedef std::set<DicomTag> SetOfTags;
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127 typedef std::map<DicomTag, Json::Value*> Replacements;
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128 typedef std::list<DicomTagRange> RemovedRanges;
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129 typedef std::list<DicomPath> ListOfPaths;
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130 typedef std::list<SequenceReplacement*> SequenceReplacements;
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131
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132 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap;
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133
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134 SetOfTags removals_;
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135 SetOfTags clearings_;
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136 Replacements replacements_;
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137 bool removePrivateTags_;
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138 ResourceType level_;
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139 UidMap uidMap_;
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140 SetOfTags privateTagsToKeep_;
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141 bool allowManualIdentifiers_;
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142 bool keepStudyInstanceUid_;
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143 bool keepSeriesInstanceUid_;
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144 bool keepSopInstanceUid_;
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145 bool updateReferencedRelationships_;
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146 bool isAnonymization_;
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147 DicomMap currentSource_;
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148 std::string privateCreator_;
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149
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150 IDicomIdentifierGenerator* identifierGenerator_;
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151
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152 // New in Orthanc 1.9.4
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153 SetOfTags uids_;
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154 RemovedRanges removedRanges_;
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155 ListOfPaths keepSequences_; // Can *possibly* be a path whose prefix is empty
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156 ListOfPaths removeSequences_; // Must *never* be a path whose prefix is empty
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157 SequenceReplacements sequenceReplacements_; // Must *never* be a path whose prefix is empty
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158
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159 std::string MapDicomIdentifier(const std::string& original,
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160 ResourceType level);
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161
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162 void RegisterMappedDicomIdentifier(const std::string& original,
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163 const std::string& mapped,
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164 ResourceType level);
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165
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166 void MapDicomTags(ParsedDicomFile& dicom,
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167 ResourceType level);
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168
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169 void MarkNotOrthancAnonymization();
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170
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171 void ClearReplacements();
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172
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173 void CancelReplacement(const DicomTag& tag);
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174
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175 void ReplaceInternal(const DicomTag& tag,
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176 const Json::Value& value);
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177
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178 void SetupUidsFromOrthanc_1_9_3();
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179
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180 void SetupAnonymization2008();
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181
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182 void SetupAnonymization2017c();
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183
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184 void SetupAnonymization2021b();
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185
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186 void UnserializeUidMap(ResourceType level,
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187 const Json::Value& serialized,
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188 const char* field);
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189
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190 public:
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191 DicomModification();
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192
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193 explicit DicomModification(const Json::Value& serialized);
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194
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195 ~DicomModification();
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196
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197 void Keep(const DicomTag& tag);
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198
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199 void Remove(const DicomTag& tag);
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200
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201 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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202 void Clear(const DicomTag& tag);
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203
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204 bool IsRemoved(const DicomTag& tag) const;
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205
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206 bool IsCleared(const DicomTag& tag) const;
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207
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208 // "safeForAnonymization" tells Orthanc that this replacement does
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209 // not break the anonymization process it implements (for internal use only)
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210 void Replace(const DicomTag& tag,
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211 const Json::Value& value, // Encoded using UTF-8
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212 bool safeForAnonymization);
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213
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214 bool IsReplaced(const DicomTag& tag) const;
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215
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216 const Json::Value& GetReplacement(const DicomTag& tag) const;
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217
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218 std::string GetReplacementAsString(const DicomTag& tag) const;
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219
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220 void SetRemovePrivateTags(bool removed);
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221
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222 bool ArePrivateTagsRemoved() const;
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223
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224 void SetLevel(ResourceType level);
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225
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226 ResourceType GetLevel() const;
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227
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228 void SetupAnonymization(DicomVersion version);
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229
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230 void Apply(ParsedDicomFile& toModify);
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231
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232 void SetAllowManualIdentifiers(bool check);
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233
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234 bool AreAllowManualIdentifiers() const;
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235
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236 void ParseModifyRequest(const Json::Value& request);
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237
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238 void ParseAnonymizationRequest(bool& patientNameReplaced,
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239 const Json::Value& request);
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240
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241 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator);
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242
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243 void Serialize(Json::Value& value) const;
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244
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245 void SetPrivateCreator(const std::string& privateCreator);
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246
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247 const std::string& GetPrivateCreator() const;
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249 // New in Orthanc 1.9.4
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250 void Keep(const DicomPath& path);
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251
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252 // New in Orthanc 1.9.4
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253 void Remove(const DicomPath& path);
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254
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255 // New in Orthanc 1.9.4
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256 void Replace(const DicomPath& path,
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257 const Json::Value& value, // Encoded using UTF-8
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258 bool safeForAnonymization);
786
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259 };
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260 }