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annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4678:2e850edf03d6

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Full support for the anonymization of subsequences containing tags whose VR is UI
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 04 Jun 2021 17:38:43 +0200
parents 521e39b3f2c0
children 898e8ac8c453
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "ParsedDicomFile.h"
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26
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27 namespace Orthanc
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28 {
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29 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable
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30 {
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31 /**
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32 * Process:
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33 * (1) Remove private tags
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34 * (2) Remove tags specified by the user
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35 * (3) Replace tags
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36 **/
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37
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38 public:
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39 enum TagOperation
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40 {
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41 TagOperation_Keep,
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42 TagOperation_Remove
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43 };
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44
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45 class IDicomIdentifierGenerator : public boost::noncopyable
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46 {
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47 public:
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48 virtual ~IDicomIdentifierGenerator()
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49 {
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50 }
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51
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52 virtual bool Apply(std::string& target,
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53 const std::string& sourceIdentifier,
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54 ResourceType level,
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55 const DicomMap& sourceDicom) = 0;
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56 };
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57
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58 private:
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59 class RelationshipsVisitor;
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60
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61 class DicomTagRange
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62 {
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63 private:
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64 uint16_t groupFrom_;
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65 uint16_t groupTo_;
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66 uint16_t elementFrom_;
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67 uint16_t elementTo_;
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68
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69 public:
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70 DicomTagRange(uint16_t groupFrom,
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71 uint16_t groupTo,
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72 uint16_t elementFrom,
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73 uint16_t elementTo);
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74
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75 uint16_t GetGroupFrom() const
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76 {
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77 return groupFrom_;
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78 }
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79
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80 uint16_t GetGroupTo() const
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81 {
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82 return groupTo_;
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83 }
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84
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85 uint16_t GetElementFrom() const
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86 {
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87 return elementFrom_;
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88 }
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89
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90 uint16_t GetElementTo() const
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91 {
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92 return elementTo_;
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93 }
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94
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95 bool Contains(const DicomTag& tag) const;
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96 };
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97
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98 typedef std::set<DicomTag> SetOfTags;
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99 typedef std::map<DicomTag, Json::Value*> Replacements;
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100 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap;
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101 typedef std::list<DicomTagRange> RemovedRanges;
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102
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103 SetOfTags removals_;
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104 SetOfTags clearings_;
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105 Replacements replacements_;
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106 SetOfTags uids_; // New in Orthanc 1.9.4
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107 RemovedRanges removedRanges_; // New in Orthanc 1.9.4
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108 bool removePrivateTags_;
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109 ResourceType level_;
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110 UidMap uidMap_;
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111 SetOfTags privateTagsToKeep_;
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112 bool allowManualIdentifiers_;
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113 bool keepStudyInstanceUid_;
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114 bool keepSeriesInstanceUid_;
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115 bool keepSopInstanceUid_;
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116 bool updateReferencedRelationships_;
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117 bool isAnonymization_;
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118 DicomMap currentSource_;
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119 std::string privateCreator_;
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120
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121 IDicomIdentifierGenerator* identifierGenerator_;
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122
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123 std::string MapDicomIdentifier(const std::string& original,
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124 ResourceType level);
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125
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126 void RegisterMappedDicomIdentifier(const std::string& original,
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127 const std::string& mapped,
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128 ResourceType level);
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129
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130 void MapDicomTags(ParsedDicomFile& dicom,
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131 ResourceType level);
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132
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133 void MarkNotOrthancAnonymization();
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134
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135 void ClearReplacements();
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136
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137 bool CancelReplacement(const DicomTag& tag);
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138
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139 void ReplaceInternal(const DicomTag& tag,
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140 const Json::Value& value);
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141
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142 void SetupUidsFromOrthanc_1_9_3();
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143
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144 void SetupAnonymization2008();
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145
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146 void SetupAnonymization2017c();
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147
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148 void SetupAnonymization2021b();
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149
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150 void UnserializeUidMap(ResourceType level,
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151 const Json::Value& serialized,
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152 const char* field);
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153
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154 public:
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155 DicomModification();
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156
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157 explicit DicomModification(const Json::Value& serialized);
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158
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159 ~DicomModification();
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160
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161 void Keep(const DicomTag& tag);
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162
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163 void Remove(const DicomTag& tag);
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164
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165 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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166 void Clear(const DicomTag& tag);
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167
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168 bool IsRemoved(const DicomTag& tag) const;
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169
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170 bool IsCleared(const DicomTag& tag) const;
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171
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172 // "safeForAnonymization" tells Orthanc that this replacement does
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173 // not break the anonymization process it implements (for internal use only)
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174 void Replace(const DicomTag& tag,
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175 const Json::Value& value, // Encoded using UTF-8
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176 bool safeForAnonymization);
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177
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178 bool IsReplaced(const DicomTag& tag) const;
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179
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180 const Json::Value& GetReplacement(const DicomTag& tag) const;
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181
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182 std::string GetReplacementAsString(const DicomTag& tag) const;
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183
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184 void SetRemovePrivateTags(bool removed);
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185
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186 bool ArePrivateTagsRemoved() const;
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187
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188 void SetLevel(ResourceType level);
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189
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190 ResourceType GetLevel() const;
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191
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192 void SetupAnonymization(DicomVersion version);
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193
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194 void Apply(ParsedDicomFile& toModify);
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195
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196 void SetAllowManualIdentifiers(bool check);
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197
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198 bool AreAllowManualIdentifiers() const;
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199
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200 void ParseModifyRequest(const Json::Value& request);
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201
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202 void ParseAnonymizationRequest(bool& patientNameReplaced,
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203 const Json::Value& request);
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204
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205 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator);
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206
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207 void Serialize(Json::Value& value) const;
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208
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209 void SetPrivateCreator(const std::string& privateCreator);
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210
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211 const std::string& GetPrivateCreator() const;
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212 };
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213 }