Mercurial > hg > orthanc
annotate Core/DicomParsing/DicomModification.h @ 3709:1f4910999fe7
Fix issue #168 (Plugins can't read private tags from the configuration file)
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 28 Feb 2020 13:23:11 +0100 |
| parents | 4922bdd046dd |
| children | 9ccbbd55bc23 |
| rev | line source |
|---|---|
| 786 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 786 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 790 | 36 #include "ParsedDicomFile.h" |
| 786 | 37 |
| 38 namespace Orthanc | |
| 39 { | |
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40 class DicomModification : public boost::noncopyable |
| 786 | 41 { |
| 42 /** | |
| 43 * Process: | |
| 44 * (1) Remove private tags | |
| 45 * (2) Remove tags specified by the user | |
| 46 * (3) Replace tags | |
| 47 **/ | |
| 48 | |
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49 public: |
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50 enum TagOperation |
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51 { |
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52 TagOperation_Keep, |
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53 TagOperation_Remove |
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54 }; |
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55 |
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56 class IDicomIdentifierGenerator : public boost::noncopyable |
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57 { |
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58 public: |
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59 virtual ~IDicomIdentifierGenerator() |
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60 { |
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61 } |
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62 |
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63 virtual bool Apply(std::string& target, |
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64 const std::string& sourceIdentifier, |
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65 ResourceType level, |
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66 const DicomMap& sourceDicom) = 0; |
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67 }; |
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68 |
| 786 | 69 private: |
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70 class RelationshipsVisitor; |
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71 |
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72 typedef std::set<DicomTag> SetOfTags; |
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73 typedef std::map<DicomTag, Json::Value*> Replacements; |
| 788 | 74 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; |
| 786 | 75 |
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76 SetOfTags removals_; |
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77 SetOfTags clearings_; |
| 786 | 78 Replacements replacements_; |
| 79 bool removePrivateTags_; | |
| 788 | 80 ResourceType level_; |
| 786 | 81 UidMap uidMap_; |
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82 SetOfTags privateTagsToKeep_; |
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83 bool allowManualIdentifiers_; |
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84 bool keepStudyInstanceUid_; |
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85 bool keepSeriesInstanceUid_; |
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86 bool updateReferencedRelationships_; |
| 2721 | 87 bool isAnonymization_; |
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88 DicomMap currentSource_; |
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89 std::string privateCreator_; |
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90 |
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91 IDicomIdentifierGenerator* identifierGenerator_; |
| 786 | 92 |
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93 std::string MapDicomIdentifier(const std::string& original, |
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94 ResourceType level); |
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96 void RegisterMappedDicomIdentifier(const std::string& original, |
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97 const std::string& mapped, |
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98 ResourceType level); |
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99 |
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100 void MapDicomTags(ParsedDicomFile& dicom, |
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101 ResourceType level); |
| 786 | 102 |
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103 void MarkNotOrthancAnonymization(); |
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104 |
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105 void ClearReplacements(); |
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106 |
| 2323 | 107 bool CancelReplacement(const DicomTag& tag); |
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108 |
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109 void ReplaceInternal(const DicomTag& tag, |
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110 const Json::Value& value); |
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111 |
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112 void SetupAnonymization2008(); |
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113 |
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114 void SetupAnonymization2017c(); |
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115 |
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116 void UnserializeUidMap(ResourceType level, |
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117 const Json::Value& serialized, |
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118 const char* field); |
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119 |
| 786 | 120 public: |
| 121 DicomModification(); | |
| 122 | |
| 2655 | 123 DicomModification(const Json::Value& serialized); |
| 124 | |
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125 ~DicomModification(); |
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126 |
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127 void Keep(const DicomTag& tag); |
| 786 | 128 |
| 129 void Remove(const DicomTag& tag); | |
| 130 | |
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131 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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132 void Clear(const DicomTag& tag); |
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133 |
| 786 | 134 bool IsRemoved(const DicomTag& tag) const; |
| 135 | |
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136 bool IsCleared(const DicomTag& tag) const; |
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137 |
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138 // "safeForAnonymization" tells Orthanc that this replacement does |
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139 // not break the anonymization process it implements (for internal use only) |
| 786 | 140 void Replace(const DicomTag& tag, |
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141 const Json::Value& value, // Encoded using UTF-8 |
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142 bool safeForAnonymization); |
| 786 | 143 |
| 144 bool IsReplaced(const DicomTag& tag) const; | |
| 145 | |
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146 const Json::Value& GetReplacement(const DicomTag& tag) const; |
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147 |
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148 std::string GetReplacementAsString(const DicomTag& tag) const; |
| 786 | 149 |
| 150 void SetRemovePrivateTags(bool removed); | |
| 151 | |
| 152 bool ArePrivateTagsRemoved() const | |
| 153 { | |
| 154 return removePrivateTags_; | |
| 155 } | |
| 156 | |
| 788 | 157 void SetLevel(ResourceType level); |
| 786 | 158 |
| 788 | 159 ResourceType GetLevel() const |
| 786 | 160 { |
| 161 return level_; | |
| 162 } | |
| 163 | |
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164 void SetupAnonymization(DicomVersion version); |
| 786 | 165 |
| 166 void Apply(ParsedDicomFile& toModify); | |
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167 |
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168 void SetAllowManualIdentifiers(bool check) |
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169 { |
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170 allowManualIdentifiers_ = check; |
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171 } |
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172 |
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173 bool AreAllowManualIdentifiers() const |
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174 { |
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175 return allowManualIdentifiers_; |
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176 } |
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177 |
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178 void ParseModifyRequest(const Json::Value& request); |
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179 |
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180 void ParseAnonymizationRequest(bool& patientNameReplaced, |
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181 const Json::Value& request); |
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DicomModification::SetDicomIdentifierGenerator()
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182 |
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DicomModification::SetDicomIdentifierGenerator()
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183 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator) |
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DicomModification::SetDicomIdentifierGenerator()
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184 { |
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DicomModification::SetDicomIdentifierGenerator()
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185 identifierGenerator_ = &generator; |
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186 } |
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event queues in Lua, serialization of sequence of operations
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187 |
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188 void Serialize(Json::Value& value) const; |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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189 |
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Fix issue #168 (Plugins can't read private tags from the configuration file)
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190 void SetPrivateCreator(const std::string& privateCreator) |
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parents:
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191 { |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
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192 privateCreator_ = privateCreator; |
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parents:
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193 } |
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parents:
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194 |
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195 const std::string& GetPrivateCreator() |
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parents:
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196 { |
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parents:
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197 return privateCreator_; |
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parents:
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198 } |
| 786 | 199 }; |
| 200 } |