Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.cpp @ 4137:6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 06 Aug 2020 17:38:55 +0200 |
parents | 2724977419fb |
children | 0ddc5297a8ab |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
136 | 11 * |
0 | 12 * This program is distributed in the hope that it will be useful, but |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
0 | 20 **/ |
21 | |
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22 |
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23 #include "../PrecompiledHeaders.h" |
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24 |
71 | 25 #ifndef NOMINMAX |
26 #define NOMINMAX | |
27 #endif | |
0 | 28 |
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29 #if !defined(ORTHANC_SANDBOXED) |
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30 # error The macro ORTHANC_SANDBOXED must be defined |
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31 #endif |
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32 |
3117 | 33 #if !defined(DCMTK_VERSION_NUMBER) |
34 # error The macro DCMTK_VERSION_NUMBER must be defined | |
35 #endif | |
36 | |
0 | 37 #include "FromDcmtkBridge.h" |
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38 #include "ToDcmtkBridge.h" |
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39 #include "../Compatibility.h" |
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40 #include "../Logging.h" |
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41 #include "../Toolbox.h" |
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42 #include "../OrthancException.h" |
0 | 43 |
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44 #if ORTHANC_SANDBOXED == 0 |
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45 # include "../TemporaryFile.h" |
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46 #endif |
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47 |
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48 #include <list> |
71 | 49 #include <limits> |
50 | |
0 | 51 #include <boost/lexical_cast.hpp> |
1656 | 52 #include <boost/filesystem.hpp> |
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53 #include <boost/algorithm/string/predicate.hpp> |
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54 #include <boost/algorithm/string/join.hpp> |
0 | 55 |
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56 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 57 #include <dcmtk/dcmdata/dcdicent.h> |
58 #include <dcmtk/dcmdata/dcdict.h> | |
59 #include <dcmtk/dcmdata/dcfilefo.h> | |
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60 #include <dcmtk/dcmdata/dcistrmb.h> |
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61 #include <dcmtk/dcmdata/dcostrmb.h> |
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62 #include <dcmtk/dcmdata/dcpixel.h> |
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63 #include <dcmtk/dcmdata/dcuid.h> |
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64 #include <dcmtk/dcmdata/dcxfer.h> |
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65 |
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66 #include <dcmtk/dcmdata/dcvrae.h> |
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67 #include <dcmtk/dcmdata/dcvras.h> |
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68 #include <dcmtk/dcmdata/dcvrat.h> |
302
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69 #include <dcmtk/dcmdata/dcvrcs.h> |
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70 #include <dcmtk/dcmdata/dcvrda.h> |
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71 #include <dcmtk/dcmdata/dcvrds.h> |
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72 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 73 #include <dcmtk/dcmdata/dcvrfd.h> |
74 #include <dcmtk/dcmdata/dcvrfl.h> | |
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75 #include <dcmtk/dcmdata/dcvris.h> |
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76 #include <dcmtk/dcmdata/dcvrlo.h> |
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77 #include <dcmtk/dcmdata/dcvrlt.h> |
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78 #include <dcmtk/dcmdata/dcvrpn.h> |
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79 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 80 #include <dcmtk/dcmdata/dcvrsl.h> |
81 #include <dcmtk/dcmdata/dcvrss.h> | |
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82 #include <dcmtk/dcmdata/dcvrst.h> |
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83 #include <dcmtk/dcmdata/dcvrtm.h> |
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84 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 85 #include <dcmtk/dcmdata/dcvrul.h> |
86 #include <dcmtk/dcmdata/dcvrus.h> | |
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87 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 88 |
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89 #if DCMTK_VERSION_NUMBER >= 361 |
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90 # include <dcmtk/dcmdata/dcvruc.h> |
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91 # include <dcmtk/dcmdata/dcvrur.h> |
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92 #endif |
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93 |
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94 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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95 # include <OrthancFrameworkResources.h> |
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96 #endif |
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97 |
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98 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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99 # include <dcmtk/dcmjpeg/djdecode.h> |
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100 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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101 # include <dcmtk/dcmjpeg/djencode.h> |
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102 # endif |
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103 #endif |
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104 |
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105 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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106 # include <dcmtk/dcmjpls/djdecode.h> |
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107 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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108 # include <dcmtk/dcmjpls/djencode.h> |
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109 # endif |
1930 | 110 #endif |
111 | |
112 | |
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113 #include <dcmtk/dcmdata/dcrledrg.h> |
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114 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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115 # include <dcmtk/dcmdata/dcrleerg.h> |
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116 # include <dcmtk/dcmimage/diregist.h> // include to support color images |
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117 #endif |
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118 |
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119 |
62 | 120 namespace Orthanc |
0 | 121 { |
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122 static bool IsBinaryTag(const DcmTag& key) |
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123 { |
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124 return (key.isUnknownVR() || |
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125 key.getEVR() == EVR_OB || |
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126 key.getEVR() == EVR_OW || |
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127 key.getEVR() == EVR_UN || |
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128 key.getEVR() == EVR_ox); |
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129 } |
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130 |
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131 |
1656 | 132 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
133 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
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134 FrameworkResources::FileResourceId resource) |
1656 | 135 { |
2017 | 136 std::string content; |
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137 FrameworkResources::GetFileResource(content, resource); |
1656 | 138 |
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139 #if ORTHANC_SANDBOXED == 0 |
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140 TemporaryFile tmp; |
2017 | 141 tmp.Write(content); |
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143 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
144 { | |
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145 throw OrthancException(ErrorCode_InternalError, |
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146 "Cannot read embedded dictionary. Under Windows, make sure that " |
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147 "your TEMP directory does not contain special characters."); |
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149 #else |
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150 if (!dictionary.loadFromMemory(content)) |
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151 { |
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152 throw OrthancException(ErrorCode_InternalError, |
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153 "Cannot read embedded dictionary. Under Windows, make sure that " |
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154 "your TEMP directory does not contain special characters."); |
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155 } |
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156 #endif |
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158 #endif | |
159 | |
160 | |
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161 namespace |
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162 { |
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163 class DictionaryLocker : public boost::noncopyable |
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164 { |
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165 private: |
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166 DcmDataDictionary& dictionary_; |
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167 |
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168 public: |
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169 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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170 { |
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171 } |
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172 |
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173 ~DictionaryLocker() |
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174 { |
3117 | 175 #if DCMTK_VERSION_NUMBER >= 364 |
176 dcmDataDict.wrunlock(); | |
177 #else | |
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178 dcmDataDict.unlock(); |
3117 | 179 #endif |
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180 } |
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181 |
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182 DcmDataDictionary& operator*() |
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183 { |
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184 return dictionary_; |
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185 } |
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186 |
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187 DcmDataDictionary* operator->() |
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188 { |
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189 return &dictionary_; |
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190 } |
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191 }; |
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192 |
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193 |
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194 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter) \ |
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195 \ |
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196 struct converter \ |
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197 { \ |
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198 typedef cType CType; \ |
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199 \ |
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200 static bool Apply(CType& result, \ |
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201 DcmElement& element, \ |
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202 size_t i) \ |
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203 { \ |
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204 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \ |
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205 } \ |
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206 }; |
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207 |
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208 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32) |
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209 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16) |
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210 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32) |
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211 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16) |
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212 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32) |
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213 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64) |
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214 |
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215 |
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216 template <typename F> |
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217 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element) |
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218 { |
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219 F f; |
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220 typename F::CType value; |
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221 |
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222 if (element.getLength() > sizeof(typename F::CType) |
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223 && (element.getLength() % sizeof(typename F::CType)) == 0) |
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224 { |
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225 size_t count = element.getLength() / sizeof(typename F::CType); |
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226 std::vector<std::string> strings; |
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227 for (size_t i = 0; i < count; i++) { |
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228 if (f.Apply(value, element, i)) { |
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229 strings.push_back(boost::lexical_cast<std::string>(value)); |
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230 } |
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231 } |
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232 return new DicomValue(boost::algorithm::join(strings, "\\"), false); |
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233 } |
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234 else if (f.Apply(value, element, 0)) { |
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235 return new DicomValue(boost::lexical_cast<std::string>(value), false); |
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236 } |
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237 else { |
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238 return new DicomValue; |
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239 } |
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240 } |
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241 |
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242 } |
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243 |
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244 |
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245 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
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2296 | 247 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER; |
248 | |
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249 { |
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250 DictionaryLocker locker; |
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251 |
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252 locker->clear(); |
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254 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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255 LOG(INFO) << "Loading the embedded dictionaries"; |
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256 /** |
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257 * Do not load DICONDE dictionary, it breaks the other tags. The |
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258 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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259 * dictionary is not loaded by storescu. |
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260 **/ |
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261 //LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICONDE); |
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262 |
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263 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICOM); |
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264 |
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265 if (loadPrivateDictionary) |
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266 { |
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267 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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268 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_PRIVATE); |
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269 } |
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270 else |
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271 { |
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272 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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273 } |
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275 #else |
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276 std::vector<std::string> dictionaries; |
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277 |
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278 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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279 if (env != NULL) |
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280 { |
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281 // This mimics the behavior of DCMTK: |
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282 // https://support.dcmtk.org/docs/file_envvars.html |
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283 #if defined(_WIN32) |
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284 Toolbox::TokenizeString(dictionaries, std::string(env), ';'); |
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285 #else |
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286 Toolbox::TokenizeString(dictionaries, std::string(env), ':'); |
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287 #endif |
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288 } |
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289 else |
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290 { |
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291 boost::filesystem::path base = DCMTK_DICTIONARY_DIR; |
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292 dictionaries.push_back((base / "dicom.dic").string()); |
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293 dictionaries.push_back((base / "private.dic").string()); |
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294 } |
1656 | 295 |
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296 for (size_t i = 0; i < dictionaries.size(); i++) |
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297 { |
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298 LOG(WARNING) << "Loading external DICOM dictionary: \"" << dictionaries[i] << "\""; |
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299 |
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300 if (!locker->loadDictionary(dictionaries[i].c_str())) |
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301 { |
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302 throw OrthancException(ErrorCode_InexistentFile); |
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303 } |
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304 } |
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305 |
1656 | 306 #endif |
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307 } |
1656 | 308 |
309 /* make sure data dictionary is loaded */ | |
310 if (!dcmDataDict.isDictionaryLoaded()) | |
311 { | |
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312 throw OrthancException(ErrorCode_InternalError, |
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313 "No DICOM dictionary loaded, check environment variable: " + |
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314 std::string(DCM_DICT_ENVIRONMENT_VARIABLE)); |
1656 | 315 } |
316 | |
317 { | |
318 // Test the dictionary with a simple DICOM tag | |
319 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
320 if (key.getEVR() != EVR_DS) | |
321 { | |
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322 throw OrthancException(ErrorCode_InternalError, |
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323 "The DICOM dictionary has not been correctly read"); |
1656 | 324 } |
325 } | |
326 } | |
327 | |
328 | |
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329 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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330 ValueRepresentation vr, |
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331 const std::string& name, |
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332 unsigned int minMultiplicity, |
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333 unsigned int maxMultiplicity, |
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334 const std::string& privateCreator) |
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335 { |
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336 if (minMultiplicity < 1) |
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337 { |
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338 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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339 } |
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340 |
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341 bool arbitrary = false; |
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342 if (maxMultiplicity == 0) |
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343 { |
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344 maxMultiplicity = DcmVariableVM; |
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345 arbitrary = true; |
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346 } |
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347 else if (maxMultiplicity < minMultiplicity) |
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348 { |
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349 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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350 } |
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351 |
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352 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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353 |
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354 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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355 << name << " (multiplicity: " << minMultiplicity << "-" |
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356 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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357 |
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358 std::unique_ptr<DcmDictEntry> entry; |
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359 if (privateCreator.empty()) |
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360 { |
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361 if (tag.GetGroup() % 2 == 1) |
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362 { |
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363 char buf[128]; |
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364 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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365 "but no private creator was associated with it", |
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366 tag.GetGroup(), tag.GetElement()); |
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367 LOG(WARNING) << buf; |
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368 } |
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369 |
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370 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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371 tag.GetElement(), |
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372 evr, name.c_str(), |
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373 static_cast<int>(minMultiplicity), |
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374 static_cast<int>(maxMultiplicity), |
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375 NULL /* version */, |
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376 OFTrue /* doCopyString */, |
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377 NULL /* private creator */)); |
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378 } |
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379 else |
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380 { |
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381 // "Private Data Elements have an odd Group Number that is not |
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382 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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383 // (FFFF,eeee)." |
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384 if (tag.GetGroup() % 2 == 0 /* even */ || |
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385 tag.GetGroup() == 0x0001 || |
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386 tag.GetGroup() == 0x0003 || |
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387 tag.GetGroup() == 0x0005 || |
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388 tag.GetGroup() == 0x0007 || |
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389 tag.GetGroup() == 0xffff) |
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390 { |
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391 char buf[128]; |
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392 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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393 tag.GetGroup(), tag.GetElement()); |
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394 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf)); |
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395 } |
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396 |
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397 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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398 tag.GetElement(), |
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399 evr, name.c_str(), |
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400 static_cast<int>(minMultiplicity), |
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401 static_cast<int>(maxMultiplicity), |
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402 "private" /* version */, |
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403 OFTrue /* doCopyString */, |
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404 privateCreator.c_str())); |
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405 } |
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406 |
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407 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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408 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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409 |
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410 { |
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411 DictionaryLocker locker; |
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412 |
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413 if (locker->findEntry(name.c_str())) |
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414 { |
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415 throw OrthancException(ErrorCode_AlreadyExistingTag, |
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416 "Cannot register two tags with the same symbolic name \"" + name + "\""); |
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417 } |
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418 |
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419 locker->addEntry(entry.release()); |
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420 } |
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421 } |
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422 |
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423 |
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424 Encoding FromDcmtkBridge::DetectEncoding(bool& hasCodeExtensions, |
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425 DcmItem& dataset, |
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426 Encoding defaultEncoding) |
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427 { |
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428 // http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2 |
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429 |
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430 OFString tmp; |
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431 if (dataset.findAndGetOFStringArray(DCM_SpecificCharacterSet, tmp).good()) |
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432 { |
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433 std::vector<std::string> tokens; |
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434 Toolbox::TokenizeString(tokens, std::string(tmp.c_str()), '\\'); |
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435 |
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436 hasCodeExtensions = (tokens.size() > 1); |
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437 |
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438 for (size_t i = 0; i < tokens.size(); i++) |
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439 { |
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440 std::string characterSet = Toolbox::StripSpaces(tokens[i]); |
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441 |
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442 if (!characterSet.empty()) |
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443 { |
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444 Encoding encoding; |
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445 |
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446 if (GetDicomEncoding(encoding, characterSet.c_str())) |
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447 { |
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448 // The specific character set is supported by the Orthanc core |
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449 return encoding; |
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450 } |
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451 else |
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452 { |
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453 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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454 << ", fallback to ASCII (remove all special characters)"; |
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455 return Encoding_Ascii; |
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456 } |
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457 } |
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458 } |
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459 } |
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460 else |
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461 { |
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462 hasCodeExtensions = false; |
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463 } |
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464 |
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465 // No specific character set tag: Use the default encoding |
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466 return defaultEncoding; |
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467 } |
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468 |
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469 |
2125 | 470 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
471 DcmItem& dataset, | |
472 unsigned int maxStringLength, | |
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473 const std::set<DicomTag>& ignoreTagLength) |
0 | 474 { |
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475 const Encoding defaultEncoding = GetDefaultDicomEncoding(); |
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|
476 |
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477 bool hasCodeExtensions; |
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478 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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479 |
0 | 480 target.Clear(); |
481 for (unsigned long i = 0; i < dataset.card(); i++) | |
482 { | |
483 DcmElement* element = dataset.getElement(i); | |
484 if (element && element->isLeaf()) | |
485 { | |
3651
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486 target.SetValueInternal(element->getTag().getGTag(), |
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487 element->getTag().getETag(), |
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|
488 ConvertLeafElement(*element, DicomToJsonFlags_Default, |
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|
489 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength)); |
0 | 490 } |
491 } | |
492 } | |
493 | |
494 | |
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diff
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|
495 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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|
496 { |
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|
497 return DicomTag(tag.getGTag(), tag.getETag()); |
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498 } |
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|
499 |
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|
500 |
0 | 501 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
502 { | |
503 return DicomTag(element.getGTag(), element.getETag()); | |
504 } | |
505 | |
506 | |
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|
507 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
1736
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diff
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|
508 DicomToJsonFlags flags, |
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diff
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|
509 unsigned int maxStringLength, |
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diff
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|
510 Encoding encoding, |
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511 bool hasCodeExtensions, |
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|
512 const std::set<DicomTag>& ignoreTagLength) |
0 | 513 { |
514 if (!element.isLeaf()) | |
515 { | |
1582
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516 // This function is only applicable to leaf elements |
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|
517 throw OrthancException(ErrorCode_BadParameterType); |
0 | 518 } |
519 | |
1818
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ParsedDicomFile::CreateFromJson
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520 char *c = NULL; |
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521 if (element.isaString() && |
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522 element.getString(c).good()) |
0 | 523 { |
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524 if (c == NULL) // This case corresponds to the empty string |
0 | 525 { |
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526 return new DicomValue("", false); |
0 | 527 } |
528 else | |
529 { | |
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|
530 std::string s(c); |
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531 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
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|
532 |
1929
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|
533 if (maxStringLength != 0 && |
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534 utf8.size() > maxStringLength && |
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535 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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536 { |
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537 return new DicomValue; // Too long, create a NULL value |
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538 } |
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539 else |
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540 { |
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541 return new DicomValue(utf8, false); |
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542 } |
0 | 543 } |
544 } | |
545 | |
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546 |
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547 if (element.getVR() == EVR_UN) |
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548 { |
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549 // Unknown value representation: Lookup in the dictionary. This |
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550 // is notably the case for private tags registered with the |
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551 // "Dictionary" configuration option. |
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552 DictionaryLocker locker; |
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553 |
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554 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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555 element.getTag().getPrivateCreator()); |
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556 if (entry != NULL && |
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557 entry->getVR().isaString()) |
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558 { |
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|
559 Uint8* data = NULL; |
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560 |
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561 // At (*), we do not try and convert to UTF-8, as nothing says |
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562 // the encoding of the private tag is the same as that of the |
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563 // remaining of the DICOM dataset. Only go for ASCII strings. |
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564 |
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565 if (element.getUint8Array(data) == EC_Normal && |
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|
566 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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567 { |
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568 if (data == NULL) |
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|
569 { |
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570 return new DicomValue("", false); // Empty string |
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|
571 } |
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|
572 else if (maxStringLength != 0 && |
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573 element.getLength() > maxStringLength && |
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574 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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575 { |
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576 return new DicomValue; // Too long, create a NULL value |
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|
577 } |
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578 else |
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579 { |
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|
580 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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|
581 return new DicomValue(s, false); |
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582 } |
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|
583 } |
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584 } |
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585 } |
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changeset
|
586 |
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diff
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|
587 |
0 | 588 try |
589 { | |
590 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
591 switch (element.getVR()) | |
592 { | |
593 | |
594 /** | |
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DicomToJsonFlags_IncludeBinary
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diff
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|
595 * Deal with binary data (including PixelData). |
0 | 596 **/ |
306
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diff
changeset
|
597 |
302
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changeset
|
598 case EVR_OB: // other byte |
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599 case EVR_OF: // other float |
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|
600 case EVR_OW: // other word |
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diff
changeset
|
601 case EVR_UN: // unknown value representation |
1739
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include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
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1738
diff
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|
602 case EVR_ox: // OB or OW depending on context |
306
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diff
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|
603 case EVR_DS: // decimal string |
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diff
changeset
|
604 case EVR_IS: // integer string |
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diff
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|
605 case EVR_AS: // age string |
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|
606 case EVR_DA: // date string |
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changeset
|
607 case EVR_DT: // date time string |
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diff
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|
608 case EVR_TM: // time string |
302
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diff
changeset
|
609 case EVR_AE: // application entity title |
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diff
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|
610 case EVR_CS: // code string |
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changeset
|
611 case EVR_SH: // short string |
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|
612 case EVR_LO: // long string |
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613 case EVR_ST: // short text |
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|
614 case EVR_LT: // long text |
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615 case EVR_UT: // unlimited text |
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|
616 case EVR_PN: // person name |
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617 case EVR_UI: // unique identifier |
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618 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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619 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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620 { |
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621 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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622 { |
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|
623 Uint8* data = NULL; |
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624 if (element.getUint8Array(data) == EC_Normal) |
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625 { |
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626 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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627 } |
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|
628 } |
0 | 629 |
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630 return new DicomValue; |
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631 } |
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|
632 |
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|
633 /** |
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diff
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|
634 * Numeric types |
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635 **/ |
0 | 636 |
302
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637 case EVR_SL: // signed long |
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|
638 { |
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639 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element); |
302
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640 } |
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|
641 |
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642 case EVR_SS: // signed short |
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643 { |
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644 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element); |
302
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645 } |
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646 |
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647 case EVR_UL: // unsigned long |
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648 { |
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649 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element); |
302
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650 } |
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651 |
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652 case EVR_US: // unsigned short |
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653 { |
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654 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element); |
302
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655 } |
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656 |
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657 case EVR_FL: // float single-precision |
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658 { |
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659 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element); |
302
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660 } |
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661 |
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662 case EVR_FD: // float double-precision |
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663 { |
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664 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element); |
1131 | 665 } |
666 | |
667 | |
668 /** | |
669 * Attribute tag. | |
670 **/ | |
671 | |
672 case EVR_AT: | |
673 { | |
1147 | 674 DcmTagKey tag; |
675 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
676 { | |
677 DicomTag t(tag.getGroup(), tag.getElement()); | |
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678 return new DicomValue(t.Format(), false); |
1147 | 679 } |
1131 | 680 else |
1147 | 681 { |
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682 return new DicomValue; |
1147 | 683 } |
302
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684 } |
0 | 685 |
686 | |
687 /** | |
302
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688 * Sequence types, should never occur at this point because of |
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689 * "element.isLeaf()". |
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690 **/ |
0 | 691 |
302
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692 case EVR_SQ: // sequence of items |
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693 return new DicomValue; |
0 | 694 |
695 | |
302
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696 /** |
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697 * Internal to DCMTK. |
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698 **/ |
0 | 699 |
302
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700 case EVR_xs: // SS or US depending on context |
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701 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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702 case EVR_na: // na="not applicable", for data which has no VR |
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703 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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704 case EVR_item: // used internally for items |
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705 case EVR_metainfo: // used internally for meta info datasets |
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706 case EVR_dataset: // used internally for datasets |
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707 case EVR_fileFormat: // used internally for DICOM files |
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708 case EVR_dicomDir: // used internally for DICOMDIR objects |
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709 case EVR_dirRecord: // used internally for DICOMDIR records |
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710 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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711 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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712 case EVR_PixelData: // used internally for uncompressed pixeld data |
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713 case EVR_OverlayData: // used internally for overlay data |
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714 return new DicomValue; |
0 | 715 |
716 | |
302
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717 /** |
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718 * Default case. |
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719 **/ |
0 | 720 |
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721 default: |
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722 return new DicomValue; |
0 | 723 } |
724 } | |
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725 catch (boost::bad_lexical_cast&) |
0 | 726 { |
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727 return new DicomValue; |
0 | 728 } |
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729 catch (std::bad_cast&) |
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730 { |
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731 return new DicomValue; |
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732 } |
0 | 733 } |
734 | |
735 | |
1687 | 736 static Json::Value& PrepareNode(Json::Value& parent, |
737 DcmElement& element, | |
738 DicomToJsonFormat format) | |
0 | 739 { |
1687 | 740 assert(parent.type() == Json::objectValue); |
0 | 741 |
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742 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
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743 const std::string formattedTag = tag.Format(); |
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744 |
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745 if (format == DicomToJsonFormat_Short) |
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746 { |
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747 parent[formattedTag] = Json::nullValue; |
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748 return parent[formattedTag]; |
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749 } |
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750 |
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751 // This code gives access to the name of the private tags |
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diff
changeset
|
752 std::string tagName = FromDcmtkBridge::GetTagName(element); |
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753 |
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754 switch (format) |
0 | 755 { |
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756 case DicomToJsonFormat_Human: |
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757 parent[tagName] = Json::nullValue; |
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758 return parent[tagName]; |
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759 |
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760 case DicomToJsonFormat_Full: |
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761 { |
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762 parent[formattedTag] = Json::objectValue; |
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763 Json::Value& node = parent[formattedTag]; |
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764 |
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765 if (element.isLeaf()) |
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766 { |
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767 node["Name"] = tagName; |
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768 |
2076 | 769 if (element.getTag().getPrivateCreator() != NULL) |
1688
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|
770 { |
2076 | 771 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
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772 } |
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773 |
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774 return node; |
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775 } |
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776 else |
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777 { |
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778 node["Name"] = tagName; |
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779 node["Type"] = "Sequence"; |
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780 node["Value"] = Json::nullValue; |
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781 return node["Value"]; |
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782 } |
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783 } |
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784 |
1688
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785 default: |
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786 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 787 } |
788 } | |
789 | |
790 | |
791 static void LeafValueToJson(Json::Value& target, | |
792 const DicomValue& value, | |
793 DicomToJsonFormat format, | |
1738
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794 DicomToJsonFlags flags, |
1688
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795 unsigned int maxStringLength) |
1687 | 796 { |
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797 Json::Value* targetValue = NULL; |
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798 Json::Value* targetType = NULL; |
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799 |
1688
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|
800 switch (format) |
1687 | 801 { |
1688
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802 case DicomToJsonFormat_Short: |
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803 case DicomToJsonFormat_Human: |
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804 { |
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changeset
|
805 assert(target.type() == Json::nullValue); |
1738
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DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
806 targetValue = ⌖ |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
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1687
diff
changeset
|
807 break; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
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1687
diff
changeset
|
808 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
809 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
810 case DicomToJsonFormat_Full: |
0 | 811 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
812 assert(target.type() == Json::objectValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
813 target["Value"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
814 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
815 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
816 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
817 break; |
0 | 818 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
819 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
820 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
821 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 822 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
823 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
824 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
825 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
826 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
827 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
828 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
829 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
830 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
831 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
832 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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1737
diff
changeset
|
833 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
834 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
835 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
836 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
837 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
838 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
839 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
840 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
841 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
842 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
843 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
844 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
845 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
846 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
847 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
848 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
849 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
850 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
851 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
852 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
853 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
854 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
855 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
856 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
857 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
858 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
859 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
860 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
861 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
862 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
863 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
864 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
865 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
866 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
867 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
868 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
869 } |
1687 | 870 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
871 |
1687 | 872 |
2126 | 873 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
874 DcmElement& element, | |
875 DicomToJsonFormat format, | |
876 DicomToJsonFlags flags, | |
877 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
878 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
879 bool hasCodeExtensions, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
880 const std::set<DicomTag>& ignoreTagLength) |
1687 | 881 { |
1691 | 882 if (parent.type() == Json::nullValue) |
883 { | |
884 parent = Json::objectValue; | |
885 } | |
886 | |
887 assert(parent.type() == Json::objectValue); | |
1687 | 888 Json::Value& target = PrepareNode(parent, element, format); |
889 | |
890 if (element.isLeaf()) | |
891 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
892 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
893 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
894 (element, flags, 0, encoding, hasCodeExtensions, ignoreTagLength)); |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
895 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
896 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
897 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
898 LeafValueToJson(target, *v, format, flags, maxStringLength); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
899 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
900 else |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
901 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
902 LeafValueToJson(target, *v, format, flags, 0); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
903 } |
0 | 904 } |
905 else | |
906 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
907 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
908 target = Json::arrayValue; |
0 | 909 |
910 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
911 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 912 // etc. are not." The following dynamic_cast is thus OK. |
0 | 913 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
914 | |
915 for (unsigned long i = 0; i < sequence.card(); i++) | |
916 { | |
917 DcmItem* child = sequence.getItem(i); | |
1687 | 918 Json::Value& v = target.append(Json::objectValue); |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
919 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength); |
1687 | 920 } |
0 | 921 } |
922 } | |
923 | |
924 | |
2126 | 925 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
926 DcmItem& item, | |
927 DicomToJsonFormat format, | |
928 DicomToJsonFlags flags, | |
929 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
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2382
diff
changeset
|
930 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
931 bool hasCodeExtensions, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
932 const std::set<DicomTag>& ignoreTagLength) |
1686 | 933 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
934 assert(parent.type() == Json::objectValue); |
1686 | 935 |
936 for (unsigned long i = 0; i < item.card(); i++) | |
937 { | |
938 DcmElement* element = item.getElement(i); | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
939 if (element == NULL) |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
940 { |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
941 throw OrthancException(ErrorCode_InternalError); |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
942 } |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
943 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
944 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
945 |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
946 /*element->getTag().isPrivate()*/ |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
947 if (tag.IsPrivate() && |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
948 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
949 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
950 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
951 } |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
952 |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
953 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
954 { |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
955 DictionaryLocker locker; |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
956 if (locker->findEntry(element->getTag(), element->getTag().getPrivateCreator()) == NULL) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
957 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
958 continue; |
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959 } |
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960 } |
1736
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961 |
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962 if (IsBinaryTag(element->getTag())) |
1739
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963 { |
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964 // This is a binary tag |
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965 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
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966 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
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967 { |
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968 continue; |
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969 } |
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970 } |
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971 |
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972 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, |
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973 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength); |
1686 | 974 } |
975 } | |
976 | |
977 | |
2126 | 978 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
979 DcmDataset& dataset, | |
980 DicomToJsonFormat format, | |
981 DicomToJsonFlags flags, | |
2131 | 982 unsigned int maxStringLength, |
2409
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983 Encoding defaultEncoding, |
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984 const std::set<DicomTag>& ignoreTagLength) |
0 | 985 { |
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986 bool hasCodeExtensions; |
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987 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
2126 | 988 |
1688
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989 target = Json::objectValue; |
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990 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength); |
0 | 991 } |
992 | |
993 | |
2126 | 994 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
995 DcmMetaInfo& dataset, | |
996 DicomToJsonFormat format, | |
997 DicomToJsonFlags flags, | |
998 unsigned int maxStringLength) | |
1831
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999 { |
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1000 std::set<DicomTag> ignoreTagLength; |
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1001 target = Json::objectValue; |
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1002 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, false, ignoreTagLength); |
1831
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1003 } |
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1004 |
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1005 |
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1006 |
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1007 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 1008 { |
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1009 { |
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1010 // Some patches for important tags because of different DICOM |
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1011 // dictionaries between DCMTK versions |
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1012 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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1013 std::string n = tmp.GetMainTagsName(); |
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1014 if (n.size() != 0) |
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1015 { |
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1016 return n; |
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1017 } |
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1018 // End of patches |
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1019 } |
106 | 1020 |
305
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1021 #if 0 |
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1022 // This version explicitly calls the dictionary |
0 | 1023 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1024 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
1025 | |
306
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1026 std::string s(DcmTag_ERROR_TagName); |
0 | 1027 if (entry != NULL) |
1028 { | |
1029 s = std::string(entry->getTagName()); | |
1030 } | |
1031 | |
1032 dcmDataDict.unlock(); | |
1033 return s; | |
305
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1034 #else |
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1035 const char* name = tag.getTagName(); |
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1036 if (name == NULL) |
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1037 { |
306
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1038 return DcmTag_ERROR_TagName; |
305
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1039 } |
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1040 else |
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1041 { |
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1042 return std::string(name); |
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1043 } |
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1044 #endif |
0 | 1045 } |
1046 | |
1047 | |
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1048 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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1049 const std::string& privateCreator) |
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1050 { |
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1051 DcmTag tag(t.GetGroup(), t.GetElement()); |
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1052 |
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1053 if (!privateCreator.empty()) |
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1054 { |
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1055 tag.setPrivateCreator(privateCreator.c_str()); |
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1056 } |
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1057 |
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1058 return GetTagNameInternal(tag); |
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1059 } |
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1060 |
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1061 |
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1062 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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1063 { |
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1064 // Copy the tag to ensure const-correctness of DcmElement. Note |
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1065 // that the private creator information is also copied. |
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1066 DcmTag tag(element.getTag()); |
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1067 |
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1068 return GetTagNameInternal(tag); |
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1069 } |
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1070 |
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1071 |
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1072 |
304 | 1073 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 1074 { |
2662
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1075 DicomTag parsed(0, 0); |
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1076 if (DicomTag::ParseHexadecimal(parsed, name)) |
304 | 1077 { |
2662
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1078 return parsed; |
1861
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1079 } |
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1080 |
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1081 #if 0 |
0 | 1082 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1083 const DcmDictEntry* entry = dict.findEntry(name); | |
1084 | |
1085 if (entry == NULL) | |
1086 { | |
1087 dcmDataDict.unlock(); | |
1582
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1088 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1089 } |
1090 else | |
1091 { | |
1092 DcmTagKey key = entry->getKey(); | |
1093 DicomTag tag(key.getGroup(), key.getElement()); | |
1094 dcmDataDict.unlock(); | |
1095 return tag; | |
1096 } | |
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1097 #else |
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1098 DcmTag tag; |
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1099 if (DcmTag::findTagFromName(name, tag).good()) |
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1100 { |
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1101 return DicomTag(tag.getGTag(), tag.getETag()); |
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1102 } |
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1103 else |
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1104 { |
2470 | 1105 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\""; |
1582
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1106 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1107 } |
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1108 #endif |
0 | 1109 } |
1110 | |
1111 | |
1655
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1112 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1113 { |
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1114 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1115 return tmp.isUnknownVR(); |
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1116 } |
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1117 |
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1118 |
0 | 1119 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1120 const DicomMap& values, |
1121 bool simplify) | |
0 | 1122 { |
1123 if (result.type() != Json::objectValue) | |
1124 { | |
62 | 1125 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1126 } |
1127 | |
1128 result.clear(); | |
1129 | |
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1130 for (DicomMap::Content::const_iterator |
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1131 it = values.content_.begin(); it != values.content_.end(); ++it) |
0 | 1132 { |
2115
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1133 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1134 const std::string tagName = GetTagName(it->first, ""); |
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1135 |
1368 | 1136 if (simplify) |
1137 { | |
1737
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1138 if (it->second->IsNull()) |
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1139 { |
2115
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1140 result[tagName] = Json::nullValue; |
1737
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1141 } |
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1142 else |
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1143 { |
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1144 // TODO IsBinary |
2115
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1145 result[tagName] = it->second->GetContent(); |
1737
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1146 } |
1368 | 1147 } |
1148 else | |
1149 { | |
1150 Json::Value value = Json::objectValue; | |
1151 | |
2115
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|
1152 value["Name"] = tagName; |
1368 | 1153 |
1154 if (it->second->IsNull()) | |
1155 { | |
1156 value["Type"] = "Null"; | |
1157 value["Value"] = Json::nullValue; | |
1158 } | |
1159 else | |
1160 { | |
1737
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1161 // TODO IsBinary |
1368 | 1162 value["Type"] = "String"; |
1737
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1163 value["Value"] = it->second->GetContent(); |
1368 | 1164 } |
1165 | |
1166 result[it->first.Format()] = value; | |
1167 } | |
0 | 1168 } |
1169 } | |
176 | 1170 |
1171 | |
788 | 1172 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1173 { |
1174 char uid[100]; | |
1175 | |
1176 switch (level) | |
1177 { | |
788 | 1178 case ResourceType_Patient: |
311 | 1179 // The "PatientID" field is of type LO (Long String), 64 |
1180 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1181 // as a random PatientID. | |
2512
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|
1182 return Toolbox::GenerateUuid(); |
306
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1183 |
788 | 1184 case ResourceType_Instance: |
302
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1185 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1186 |
788 | 1187 case ResourceType_Series: |
302
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1188 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1189 |
788 | 1190 case ResourceType_Study: |
302
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1191 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1192 |
302
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1193 default: |
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|
1194 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1195 } |
1196 } | |
1197 | |
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|
1198 |
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1199 |
3748
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|
1200 static bool SaveToMemoryBufferInternal(std::string& buffer, |
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|
1201 DcmFileFormat& dicom, |
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diff
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|
1202 E_TransferSyntax xfer) |
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|
1203 { |
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|
1204 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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|
1205 |
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|
1206 // Create a memory buffer with the proper size |
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|
1207 { |
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|
1208 const uint32_t estimatedSize = dicom.calcElementLength(xfer, encodingType); // (*) |
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|
1209 buffer.resize(estimatedSize); |
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|
1210 } |
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|
1211 |
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|
1212 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
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1213 |
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|
1214 // Fill the memory buffer with the meta-header and the dataset |
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|
1215 dicom.transferInit(); |
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|
1216 OFCondition c = dicom.write(ob, xfer, encodingType, NULL, |
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|
1217 /*opt_groupLength*/ EGL_recalcGL, |
3765
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|
1218 /*opt_paddingType*/ EPD_noChange, |
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|
1219 /*padlen*/ 0, /*subPadlen*/ 0, /*instanceLength*/ 0, |
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|
1220 EWM_updateMeta /* creates new SOP instance UID on lossy */); |
3748
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|
1221 dicom.transferEnd(); |
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1222 |
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|
1223 if (c.good()) |
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|
1224 { |
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|
1225 // The DICOM file is successfully written, truncate the target |
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|
1226 // buffer if its size was overestimated by (*) |
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1227 ob.flush(); |
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1228 |
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1229 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
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1230 if (effectiveSize < buffer.size()) |
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1231 { |
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1232 buffer.resize(effectiveSize); |
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1233 } |
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1234 |
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1235 return true; |
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1236 } |
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1237 else |
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1238 { |
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1239 // Error |
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1240 buffer.clear(); |
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1241 return false; |
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1242 } |
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1243 } |
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1244 |
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1245 |
291
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|
1246 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
a226e0959d8b
DicomInstanceToStore
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1247 DcmDataset& dataSet) |
291
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1248 { |
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1249 // Determine the transfer syntax which shall be used to write the |
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|
1250 // information to the file. If not possible, switch to the Little |
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1251 // Endian syntax, with explicit length. |
291
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1252 |
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1253 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
661
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1254 |
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1255 |
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1256 /** |
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1257 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1258 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1259 * dataset into memory. We now keep the original transfer syntax |
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1260 * (if available). |
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1261 **/ |
3883
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|
1262 E_TransferSyntax xfer = dataSet.getCurrentXfer(); |
661
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1263 if (xfer == EXS_Unknown) |
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1264 { |
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1265 // No information about the original transfer syntax: This is |
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1266 // most probably a DICOM dataset that was read from memory. |
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|
1267 xfer = EXS_LittleEndianExplicit; |
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1268 } |
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1269 |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1270 // Create the meta-header information |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1271 DcmFileFormat ff(&dataSet); |
661
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1272 ff.validateMetaInfo(xfer); |
1316
1c8dfedefefe
Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1307
diff
changeset
|
1273 ff.removeInvalidGroups(); |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1274 |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1275 return SaveToMemoryBufferInternal(buffer, ff, xfer); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1276 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1277 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1278 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1279 bool FromDcmtkBridge::Transcode(DcmFileFormat& dicom, |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1280 DicomTransferSyntax syntax, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1281 const DcmRepresentationParameter* representation) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1282 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1283 E_TransferSyntax xfer; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1284 if (!LookupDcmtkTransferSyntax(xfer, syntax)) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1285 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1286 throw OrthancException(ErrorCode_InternalError); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1287 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1288 else |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1289 { |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1290 DicomTransferSyntax sourceSyntax; |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1291 bool known = LookupOrthancTransferSyntax(sourceSyntax, dicom); |
3922
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
1292 |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
1293 if (!dicom.chooseRepresentation(xfer, representation).good() || |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
1294 !dicom.canWriteXfer(xfer) || |
3811
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1295 !dicom.validateMetaInfo(xfer, EWM_updateMeta).good()) |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1296 { |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1297 return false; |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1298 } |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1299 else |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1300 { |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1301 dicom.removeInvalidGroups(); |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1302 |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1303 if (known) |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1304 { |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1305 LOG(INFO) << "Transcoded an image from transfer syntax " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1306 << GetTransferSyntaxUid(sourceSyntax) << " to " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1307 << GetTransferSyntaxUid(syntax); |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1308 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1309 else |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1310 { |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1311 LOG(INFO) << "Transcoded an image from unknown transfer syntax to " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1312 << GetTransferSyntaxUid(syntax); |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1313 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1314 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1315 return true; |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1316 } |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1317 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1318 } |
1360 | 1319 |
1320 | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1321 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1322 { |
1323 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1324 return Convert(t.getEVR()); |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1325 } |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1326 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1327 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1328 { |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1329 switch (vr) |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1330 { |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1331 case EVR_AE: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1332 return ValueRepresentation_ApplicationEntity; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1333 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1334 case EVR_AS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1335 return ValueRepresentation_AgeString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1336 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1337 case EVR_AT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1338 return ValueRepresentation_AttributeTag; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1339 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1340 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1341 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1342 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1343 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1344 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1345 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1346 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1347 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1348 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1349 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1350 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1351 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1352 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1353 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1354 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1355 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1356 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1357 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1358 case EVR_IS: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1359 return ValueRepresentation_IntegerString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1360 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1361 case EVR_LO: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1362 return ValueRepresentation_LongString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1363 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1364 case EVR_LT: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1365 return ValueRepresentation_LongText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1366 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1367 case EVR_OB: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1368 return ValueRepresentation_OtherByte; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1369 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1370 #if DCMTK_VERSION_NUMBER >= 361 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1371 case EVR_OD: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1372 return ValueRepresentation_OtherDouble; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1373 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1374 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1375 case EVR_OF: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1376 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1377 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1378 #if DCMTK_VERSION_NUMBER >= 362 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1379 case EVR_OL: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1380 return ValueRepresentation_OtherLong; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1381 #endif |
2006
6301bbcbcaed
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parents:
1998
diff
changeset
|
1382 |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1383 case EVR_OW: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1384 return ValueRepresentation_OtherWord; |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1385 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1386 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1387 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1388 |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1389 case EVR_SH: |
6301bbcbcaed
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parents:
1998
diff
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|
1390 return ValueRepresentation_ShortString; |
6301bbcbcaed
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parents:
1998
diff
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|
1391 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1392 case EVR_SL: |
6301bbcbcaed
more generic support of value representations
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parents:
1998
diff
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|
1393 return ValueRepresentation_SignedLong; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1394 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1395 case EVR_SQ: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1396 return ValueRepresentation_Sequence; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1397 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1398 case EVR_SS: |
6301bbcbcaed
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parents:
1998
diff
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|
1399 return ValueRepresentation_SignedShort; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1400 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1401 case EVR_ST: |
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parents:
1998
diff
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|
1402 return ValueRepresentation_ShortText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1403 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1404 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1405 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
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|
1406 |
3199
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
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|
1407 #if DCMTK_VERSION_NUMBER >= 361 |
3198
7724ed267b5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1408 case EVR_UC: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
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|
1409 return ValueRepresentation_UnlimitedCharacters; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
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|
1410 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1411 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1412 case EVR_UI: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1413 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1414 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1415 case EVR_UL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1416 return ValueRepresentation_UnsignedLong; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1417 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1418 case EVR_UN: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1419 return ValueRepresentation_Unknown; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
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|
1420 |
3199
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
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|
1421 #if DCMTK_VERSION_NUMBER >= 361 |
3198
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
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|
1422 case EVR_UR: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1423 return ValueRepresentation_UniversalResource; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1424 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1425 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1426 case EVR_US: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1427 return ValueRepresentation_UnsignedShort; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1428 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1429 case EVR_UT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1430 return ValueRepresentation_UnlimitedText; |
1792 | 1431 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1432 default: |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1433 return ValueRepresentation_NotSupported; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1434 } |
1360 | 1435 } |
1436 | |
1689 | 1437 |
3691
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1438 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1439 const std::string& privateCreator) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1440 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1441 if (tag.IsPrivate() && |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1442 privateCreator.empty()) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1443 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1444 // This solves issue 140 (Modifying private tags with REST API |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1445 // changes VR from LO to UN) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1446 // https://bitbucket.org/sjodogne/orthanc/issues/140 |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1447 LOG(WARNING) << "Private creator should not be empty while creating a private tag: " << tag.Format(); |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1448 } |
1689 | 1449 |
3692
fd302ec6a502
fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1450 #if DCMTK_VERSION_NUMBER >= 362 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1451 DcmTag key(tag.GetGroup(), tag.GetElement()); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1452 if (tag.IsPrivate()) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1453 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1454 return DcmItem::newDicomElement(key, privateCreator.c_str()); |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
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|
1455 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1456 else |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
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|
1457 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1458 return DcmItem::newDicomElement(key, NULL); |
1689 | 1459 } |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1460 |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1461 #else |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1462 DcmTag key(tag.GetGroup(), tag.GetElement()); |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1463 if (tag.IsPrivate()) |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1464 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1465 // https://forum.dcmtk.org/viewtopic.php?t=4527 |
3708 | 1466 LOG(WARNING) << "You are using DCMTK <= 3.6.1: All the private tags " |
3691
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1467 "are considered as having a binary value representation"; |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1468 key.setPrivateCreator(privateCreator.c_str()); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1469 return new DcmOtherByteOtherWord(key); |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1470 } |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1471 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1472 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
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|
1473 return newDicomElement(key); |
4922bdd046dd
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diff
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|
1474 } |
4922bdd046dd
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3651
diff
changeset
|
1475 #endif |
1689 | 1476 } |
1477 | |
1478 | |
1479 | |
1480 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1695 | 1481 const std::string& utf8Value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1482 bool decodeDataUriScheme, |
1695 | 1483 Encoding dicomEncoding) |
1689 | 1484 { |
1485 std::string binary; | |
1695 | 1486 const std::string* decoded = &utf8Value; |
1689 | 1487 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1488 if (decodeDataUriScheme && |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2831
diff
changeset
|
1489 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
1689 | 1490 { |
1491 std::string mime; | |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1492 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1493 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1494 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1495 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1496 |
1695 | 1497 decoded = &binary; |
1498 } | |
1499 else if (dicomEncoding != Encoding_Utf8) | |
1500 { | |
1501 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1502 decoded = &binary; |
1503 } | |
1504 | |
3691
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changeset
|
1505 if (IsBinaryTag(element.getTag())) |
1689 | 1506 { |
3199
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|
1507 bool ok; |
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|
1508 |
3691
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changeset
|
1509 switch (element.getTag().getEVR()) |
3199
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diff
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|
1510 { |
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changeset
|
1511 case EVR_OW: |
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changeset
|
1512 if (decoded->size() % sizeof(Uint16) != 0) |
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|
1513 { |
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3198
diff
changeset
|
1514 LOG(ERROR) << "A tag with OW VR must have an even number of bytes"; |
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|
1515 ok = false; |
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changeset
|
1516 } |
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changeset
|
1517 else |
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changeset
|
1518 { |
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3198
diff
changeset
|
1519 ok = element.putUint16Array((const Uint16*) decoded->c_str(), decoded->size() / sizeof(Uint16)).good(); |
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|
1520 } |
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3198
diff
changeset
|
1521 |
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|
1522 break; |
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1523 |
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|
1524 default: |
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|
1525 ok = element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good(); |
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|
1526 break; |
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|
1527 } |
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1528 |
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|
1529 if (ok) |
1689 | 1530 { |
1531 return; | |
1532 } | |
1533 else | |
1534 { | |
1535 throw OrthancException(ErrorCode_InternalError); | |
1536 } | |
1537 } | |
1538 | |
1539 bool ok = false; | |
1540 | |
1541 try | |
1542 { | |
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|
1543 switch (element.getTag().getEVR()) |
1689 | 1544 { |
1545 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1546 | |
1547 /** | |
1548 * TODO. | |
1549 **/ | |
1550 | |
1551 case EVR_OB: // other byte | |
1552 case EVR_OW: // other word | |
1553 case EVR_AT: // attribute tag | |
1554 throw OrthancException(ErrorCode_NotImplemented); | |
1555 | |
1556 case EVR_UN: // unknown value representation | |
1557 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1558 | |
1559 | |
1560 /** | |
1561 * String types. | |
1562 **/ | |
1563 | |
1564 case EVR_DS: // decimal string | |
1565 case EVR_IS: // integer string | |
1566 case EVR_AS: // age string | |
1567 case EVR_DA: // date string | |
1568 case EVR_DT: // date time string | |
1569 case EVR_TM: // time string | |
1570 case EVR_AE: // application entity title | |
1571 case EVR_CS: // code string | |
1572 case EVR_SH: // short string | |
1573 case EVR_LO: // long string | |
1574 case EVR_ST: // short text | |
1575 case EVR_LT: // long text | |
1576 case EVR_UT: // unlimited text | |
1577 case EVR_PN: // person name | |
1578 case EVR_UI: // unique identifier | |
3209
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Sebastien Jodogne <s.jodogne@gmail.com>
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1579 #if DCMTK_VERSION_NUMBER >= 361 |
3199
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1580 case EVR_UC: // unlimited characters |
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1581 case EVR_UR: // URI/URL |
3209
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1582 #endif |
1689 | 1583 { |
1584 ok = element.putString(decoded->c_str()).good(); | |
1585 break; | |
1586 } | |
1587 | |
1588 | |
1589 /** | |
1590 * Numerical types | |
1591 **/ | |
1592 | |
1593 case EVR_SL: // signed long | |
1594 { | |
1595 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1596 break; | |
1597 } | |
1598 | |
1599 case EVR_SS: // signed short | |
1600 { | |
1601 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1602 break; | |
1603 } | |
1604 | |
1605 case EVR_UL: // unsigned long | |
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|
1606 #if DCMTK_VERSION_NUMBER >= 362 |
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|
1607 case EVR_OL: // other long (requires byte-swapping) |
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|
1608 #endif |
1689 | 1609 { |
1610 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1611 break; | |
1612 } | |
1613 | |
1614 case EVR_US: // unsigned short | |
1615 { | |
1616 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1617 break; | |
1618 } | |
1619 | |
1620 case EVR_FL: // float single-precision | |
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diff
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|
1621 case EVR_OF: // other float (requires byte swapping) |
1689 | 1622 { |
1623 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1624 break; | |
1625 } | |
1626 | |
1627 case EVR_FD: // float double-precision | |
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|
1628 #if DCMTK_VERSION_NUMBER >= 361 |
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|
1629 case EVR_OD: // other double (requires byte-swapping) |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1630 #endif |
1689 | 1631 { |
1632 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1633 break; | |
1634 } | |
1635 | |
1636 | |
1637 /** | |
1638 * Sequence types, should never occur at this point. | |
1639 **/ | |
1640 | |
1641 case EVR_SQ: // sequence of items | |
1642 { | |
1643 ok = false; | |
1644 break; | |
1645 } | |
1646 | |
1647 | |
1648 /** | |
1649 * Internal to DCMTK. | |
1650 **/ | |
1651 | |
1652 case EVR_ox: // OB or OW depending on context | |
1653 case EVR_xs: // SS or US depending on context | |
1654 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1655 case EVR_na: // na="not applicable", for data which has no VR | |
1656 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1657 case EVR_item: // used internally for items | |
1658 case EVR_metainfo: // used internally for meta info datasets | |
1659 case EVR_dataset: // used internally for datasets | |
1660 case EVR_fileFormat: // used internally for DICOM files | |
1661 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1662 case EVR_dirRecord: // used internally for DICOMDIR records | |
1663 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1664 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1665 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1666 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1667 case EVR_OverlayData: // used internally for overlay data | |
1668 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1669 default: | |
1670 break; | |
1671 } | |
1672 } | |
1673 catch (boost::bad_lexical_cast&) | |
1674 { | |
1675 ok = false; | |
1676 } | |
1677 | |
1678 if (!ok) | |
1679 { | |
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1680 DicomTag tag(element.getTag().getGroup(), element.getTag().getElement()); |
2954
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1681 throw OrthancException(ErrorCode_BadFileFormat, |
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1682 "While creating a DICOM instance, tag (" + tag.Format() + |
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diff
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|
1683 ") has out-of-range value: \"" + (*decoded) + "\""); |
1689 | 1684 } |
1685 } | |
1686 | |
1687 | |
1693
558b25228a23
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1688 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
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1689 const Json::Value& value, |
1818
1065401501fb
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1690 bool decodeDataUriScheme, |
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1691 Encoding dicomEncoding, |
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1692 const std::string& privateCreator) |
1689 | 1693 { |
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|
1694 std::unique_ptr<DcmElement> element; |
1689 | 1695 |
1690 | 1696 switch (value.type()) |
1689 | 1697 { |
1690 | 1698 case Json::stringValue: |
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|
1699 element.reset(CreateElementForTag(tag, privateCreator)); |
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|
1700 FillElementWithString(*element, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1701 break; |
1702 | |
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1703 case Json::nullValue: |
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1704 element.reset(CreateElementForTag(tag, privateCreator)); |
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1705 FillElementWithString(*element, "", decodeDataUriScheme, dicomEncoding); |
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1706 break; |
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2209
diff
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|
1707 |
1690 | 1708 case Json::arrayValue: |
1709 { | |
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884b55ce01f6
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|
1710 const char* p = NULL; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1711 if (tag.IsPrivate() && |
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1712 !privateCreator.empty()) |
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1713 { |
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Private tags returned by C-FIND SCP
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diff
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|
1714 p = privateCreator.c_str(); |
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1715 } |
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1716 |
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diff
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|
1717 DcmTag key(tag.GetGroup(), tag.GetElement(), p); |
1690 | 1718 if (key.getEVR() != EVR_SQ) |
1719 { | |
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|
1720 throw OrthancException(ErrorCode_BadParameterType, |
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3922
diff
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|
1721 "Bad Parameter type for tag " + tag.Format()); |
1690 | 1722 } |
1723 | |
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9f3414878c02
Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
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diff
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|
1724 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key); |
1690 | 1725 element.reset(sequence); |
1726 | |
1727 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1728 { | |
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|
1729 std::unique_ptr<DcmItem> item(new DcmItem); |
1690 | 1730 |
2830 | 1731 switch (value[i].type()) |
1690 | 1732 { |
2830 | 1733 case Json::objectValue: |
1734 { | |
1735 Json::Value::Members members = value[i].getMemberNames(); | |
1736 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1737 { | |
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1738 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding, privateCreator)); |
2830 | 1739 } |
2831 | 1740 break; |
2830 | 1741 } |
1742 | |
1743 case Json::arrayValue: | |
2831 | 1744 { |
2830 | 1745 // Lua cannot disambiguate between an empty dictionary |
1746 // and an empty array | |
1747 if (value[i].size() != 0) | |
1748 { | |
1749 throw OrthancException(ErrorCode_BadParameterType); | |
1750 } | |
1751 break; | |
2831 | 1752 } |
2830 | 1753 |
1754 default: | |
1755 throw OrthancException(ErrorCode_BadParameterType); | |
1690 | 1756 } |
1757 | |
1758 sequence->append(item.release()); | |
1759 } | |
1760 | |
1761 break; | |
1762 } | |
1763 | |
1764 default: | |
3895 | 1765 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format()); |
1689 | 1766 } |
1767 | |
1768 return element.release(); | |
1769 } | |
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1770 |
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1771 |
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1772 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
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1773 { |
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1774 DcmElement *element = NULL; |
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1775 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
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1776 { |
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1777 throw OrthancException(ErrorCode_BadFileFormat); |
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1778 } |
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1779 |
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1780 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
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1781 |
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1782 E_TransferSyntax repType; |
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1783 const DcmRepresentationParameter *repParam = NULL; |
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1784 pixelData.getCurrentRepresentationKey(repType, repParam); |
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1785 |
1924
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1786 DcmPixelSequence* pixelSequence = NULL; |
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1787 if (!pixelData.getEncapsulatedRepresentation(repType, repParam, pixelSequence).good()) |
1924
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1788 { |
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1789 return NULL; |
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diff
changeset
|
1790 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1791 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1792 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1793 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1794 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1795 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1796 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1797 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1798 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1799 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1800 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1801 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1802 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1803 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1804 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1805 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1806 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1807 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1808 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1812 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1813 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1815 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1816 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1817 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1818 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1819 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1820 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1821 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1822 "Unknown encoding while creating DICOM from JSON: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1823 value.toStyledString()); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1824 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1825 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1826 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1827 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1828 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1829 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1848 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1849 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1850 bool decodeDataUriScheme, |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1851 Encoding defaultEncoding, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1852 const std::string& privateCreator) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1853 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1854 std::unique_ptr<DcmDataset> result(new DcmDataset); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1855 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1856 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1857 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1858 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1859 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1860 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1861 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1862 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1863 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1864 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1865 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1866 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1867 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1868 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1869 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1870 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1871 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1872 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1873 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1874 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1875 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1876 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1877 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1878 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1879 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1880 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1881 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1882 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1883 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1884 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1885 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1886 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1887 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1888 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1889 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1890 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1891 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1892 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1893 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1894 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1895 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1896 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1897 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1898 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1899 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1900 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1901 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1902 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1903 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1904 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1905 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1906 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1907 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1908 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1909 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1910 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1911 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1912 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1913 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1914 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1915 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1916 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1917 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1918 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1919 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1920 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1921 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1922 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1923 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1924 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1925 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1926 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1927 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1928 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1929 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1930 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1931 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1932 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1933 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1934 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1935 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1936 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1937 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1938 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1939 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1940 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1941 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1942 std::unique_ptr<DcmFileFormat> result(new DcmFileFormat); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1943 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1944 result->transferInit(); |
3771
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1945 |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1946 /** |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1947 * New in Orthanc 1.6.0: The "size" is given as an argument to the |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1948 * "read()" method. This can avoid huge memory consumption if |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1949 * parsing an invalid DICOM file, which can notably been observed |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1950 * by executing the integration test "test_upload_compressed" on |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1951 * valgrind running Orthanc. |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1952 **/ |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
1953 if (!result->read(is, EXS_Unknown, EGL_noChange, size).good()) |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1954 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1955 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1956 "Cannot parse an invalid DICOM file (size: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1957 boost::lexical_cast<std::string>(size) + " bytes)"); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1958 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1959 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1960 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1961 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1962 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1963 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1964 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1965 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1966 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1967 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1968 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1969 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1970 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1971 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1972 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1973 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1974 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1975 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1976 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1977 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1978 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1979 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1980 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1981 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1982 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1983 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1984 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1985 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1986 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1987 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1988 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1989 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1990 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1991 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1992 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1993 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1994 Encoding source, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
1995 bool hasSourceCodeExtensions, |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1996 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1997 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1998 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1999 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2000 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2001 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2002 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2003 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2004 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2005 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2006 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2007 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2008 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2009 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2010 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2011 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2012 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2013 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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2014 if (element->isaString() && |
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2015 element->getString(c).good() && |
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2016 c != NULL) |
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2017 { |
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2018 std::string a = Toolbox::ConvertToUtf8(c, source, hasSourceCodeExtensions); |
2207
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2019 std::string b = Toolbox::ConvertFromUtf8(a, target); |
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2020 element->putString(b.c_str()); |
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2021 } |
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2022 } |
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2023 else |
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|
2024 { |
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2025 // "All subclasses of DcmElement except for DcmSequenceOfItems |
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2026 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
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Fix handling of encodings in C-FIND for worklists
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2027 // etc. are not." The following dynamic_cast is thus OK. |
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2028 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
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2029 |
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2030 for (unsigned long j = 0; j < sequence.card(); j++) |
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2031 { |
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2032 ChangeStringEncoding(*sequence.getItem(j), source, hasSourceCodeExtensions, target); |
2207
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2033 } |
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2034 } |
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2035 } |
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2036 } |
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|
2037 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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2038 |
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2039 |
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2040 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
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2041 DcmDataset& dataset, |
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2042 const std::set<DicomTag>& ignoreTagLength) |
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2043 { |
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2044 ExtractDicomAsJson(target, dataset, |
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2045 DicomToJsonFormat_Full, |
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2046 DicomToJsonFlags_Default, |
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2047 ORTHANC_MAXIMUM_TAG_LENGTH, |
2409
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|
2048 GetDefaultDicomEncoding(), |
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|
2049 ignoreTagLength); |
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2050 } |
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2051 |
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2052 |
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|
2053 void FromDcmtkBridge::InitializeCodecs() |
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2054 { |
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2055 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
2528
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old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2056 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK"; |
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|
2057 DJLSDecoderRegistration::registerCodecs(); |
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2058 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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|
2059 DJLSEncoderRegistration::registerCodecs(); |
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|
2060 # endif |
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|
2061 #endif |
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|
2062 |
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|
2063 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
2528
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Sebastien Jodogne <s.jodogne@gmail.com>
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2522
diff
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|
2064 LOG(INFO) << "Registering JPEG codecs in DCMTK"; |
2381
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|
2065 DJDecoderRegistration::registerCodecs(); |
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|
2066 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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|
2067 DJEncoderRegistration::registerCodecs(); |
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|
2068 # endif |
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|
2069 #endif |
3748
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|
2070 |
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|
2071 LOG(INFO) << "Registering RLE codecs in DCMTK"; |
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|
2072 DcmRLEDecoderRegistration::registerCodecs(); |
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|
2073 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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|
2074 DcmRLEEncoderRegistration::registerCodecs(); |
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|
2075 #endif |
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|
2076 } |
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|
2077 |
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|
2078 |
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|
2079 void FromDcmtkBridge::FinalizeCodecs() |
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|
2080 { |
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|
2081 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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|
2082 // Unregister JPEG-LS codecs |
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|
2083 DJLSDecoderRegistration::cleanup(); |
3727
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|
2084 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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|
2085 DJLSEncoderRegistration::cleanup(); |
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|
2086 # endif |
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|
2087 #endif |
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|
2088 |
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|
2089 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2090 // Unregister JPEG codecs |
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|
2091 DJDecoderRegistration::cleanup(); |
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|
2092 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
3743
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|
2093 DJEncoderRegistration::cleanup(); |
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|
2094 # endif |
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|
2095 #endif |
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2096 |
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|
2097 DcmRLEDecoderRegistration::cleanup(); |
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|
2098 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2099 DcmRLEEncoderRegistration::cleanup(); |
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2100 #endif |
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2101 } |
2499
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|
2102 |
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|
2103 |
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|
2104 |
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|
2105 // Forward declaration |
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|
2106 static void ApplyVisitorToElement(DcmElement& element, |
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|
2107 ITagVisitor& visitor, |
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|
2108 const std::vector<DicomTag>& parentTags, |
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|
2109 const std::vector<size_t>& parentIndexes, |
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|
2110 Encoding encoding, |
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|
2111 bool hasCodeExtensions); |
2499
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2112 |
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|
2113 static void ApplyVisitorToDataset(DcmItem& dataset, |
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|
2114 ITagVisitor& visitor, |
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|
2115 const std::vector<DicomTag>& parentTags, |
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|
2116 const std::vector<size_t>& parentIndexes, |
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|
2117 Encoding encoding, |
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|
2118 bool hasCodeExtensions) |
2499
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2119 { |
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|
2120 assert(parentTags.size() == parentIndexes.size()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2121 |
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ITagVisitor - for anonymization relationships
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changeset
|
2122 for (unsigned long i = 0; i < dataset.card(); i++) |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2123 { |
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ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2124 DcmElement* element = dataset.getElement(i); |
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ITagVisitor - for anonymization relationships
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diff
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2125 if (element == NULL) |
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|
2126 { |
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ITagVisitor - for anonymization relationships
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diff
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|
2127 throw OrthancException(ErrorCode_InternalError); |
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2128 } |
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2129 else |
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ITagVisitor - for anonymization relationships
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parents:
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diff
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|
2130 { |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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3209
diff
changeset
|
2131 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
2499
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|
2132 } |
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ITagVisitor - for anonymization relationships
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parents:
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diff
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|
2133 } |
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ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2134 } |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2135 |
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ITagVisitor - for anonymization relationships
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parents:
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diff
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|
2136 |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2137 static void ApplyVisitorToLeaf(DcmElement& element, |
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ITagVisitor - for anonymization relationships
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diff
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|
2138 ITagVisitor& visitor, |
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2139 const std::vector<DicomTag>& parentTags, |
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ITagVisitor - for anonymization relationships
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diff
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|
2140 const std::vector<size_t>& parentIndexes, |
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parents:
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|
2141 const DicomTag& tag, |
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2142 Encoding encoding, |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2143 bool hasCodeExtensions) |
2499
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2144 { |
3198
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unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2145 // TODO - Merge this function, that is more recent, with ConvertLeafElement() |
2499
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2146 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2147 assert(element.isLeaf()); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2148 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2149 DcmEVR evr = element.getTag().getEVR(); |
3198
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unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2150 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2151 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2152 /** |
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unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2153 * Fix the EVR for types internal to DCMTK |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2154 **/ |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2155 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2156 if (evr == EVR_ox) // OB or OW depending on context |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2157 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2158 evr = EVR_OB; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2159 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2160 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2161 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2162 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2163 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2164 evr = EVR_UN; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2165 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2166 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2167 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2168 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2169 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2170 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2171 * Deal with binary data (including PixelData). |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2172 **/ |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2173 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2174 if (evr == EVR_OB || // other byte |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2175 evr == EVR_OW || // other word |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2176 evr == EVR_UN) // unknown value representation |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2177 { |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2178 Uint16* data16 = NULL; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2179 Uint8* data = NULL; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2180 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2181 if (evr == EVR_OW && |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2182 element.getUint16Array(data16) == EC_Normal) |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2183 { |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2184 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data16, element.getLength()); |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2185 } |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2186 else if (evr != EVR_OW && |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2187 element.getUint8Array(data) == EC_Normal) |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2188 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2189 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength()); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2190 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2191 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2192 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2193 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2194 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2195 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2196 return; // We're done |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2197 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2198 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2199 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2200 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2201 * Deal with plain strings (and convert them to UTF-8) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2202 **/ |
2499
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ITagVisitor - for anonymization relationships
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changeset
|
2203 |
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changeset
|
2204 char *c = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2205 if (element.isaString() && |
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2206 element.getString(c).good()) |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2207 { |
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changeset
|
2208 std::string utf8; |
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ITagVisitor - for anonymization relationships
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changeset
|
2209 |
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changeset
|
2210 if (c != NULL) // This case corresponds to the empty string |
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diff
changeset
|
2211 { |
3448
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2212 if (element.getTag() == DCM_SpecificCharacterSet) |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2213 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2214 utf8.assign(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2215 } |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2216 else |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2217 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2218 std::string s(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2219 utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2220 } |
2499
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changeset
|
2221 } |
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changeset
|
2222 |
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changeset
|
2223 std::string newValue; |
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ITagVisitor - for anonymization relationships
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changeset
|
2224 ITagVisitor::Action action = visitor.VisitString |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2225 (newValue, parentTags, parentIndexes, tag, vr, utf8); |
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ITagVisitor - for anonymization relationships
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changeset
|
2226 |
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ITagVisitor - for anonymization relationships
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changeset
|
2227 switch (action) |
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ITagVisitor - for anonymization relationships
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changeset
|
2228 { |
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changeset
|
2229 case ITagVisitor::Action_None: |
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diff
changeset
|
2230 break; |
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changeset
|
2231 |
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ITagVisitor - for anonymization relationships
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changeset
|
2232 case ITagVisitor::Action_Replace: |
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ITagVisitor - for anonymization relationships
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changeset
|
2233 { |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2234 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding); |
2522
ce2dfba9417c
fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2513
diff
changeset
|
2235 if (element.putString(s.c_str()) != EC_Normal) |
2499
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2236 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2237 throw OrthancException(ErrorCode_InternalError, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2238 "Cannot replace value of tag: " + tag.Format()); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2239 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2240 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2241 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2242 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2243 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2244 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2245 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2246 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2247 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2248 return; // We're done |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2249 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2250 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2251 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2252 try |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2253 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2254 // http://support.dcmtk.org/docs/dcvr_8h-source.html |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2255 switch (evr) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2256 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2257 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2258 /** |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2259 * Plain string values. |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2260 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2261 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2262 case EVR_DS: // decimal string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2263 case EVR_IS: // integer string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2264 case EVR_AS: // age string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2265 case EVR_DA: // date string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2266 case EVR_DT: // date time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2267 case EVR_TM: // time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2268 case EVR_AE: // application entity title |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2269 case EVR_CS: // code string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2270 case EVR_SH: // short string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2271 case EVR_LO: // long string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2272 case EVR_ST: // short text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2273 case EVR_LT: // long text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2274 case EVR_UT: // unlimited text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2275 case EVR_PN: // person name |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2276 case EVR_UI: // unique identifier |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2277 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2278 Uint8* data = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2279 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2280 if (element.getUint8Array(data) == EC_Normal) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2281 { |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2282 const Uint32 length = element.getLength(); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2283 Uint32 l = 0; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2284 while (l < length && |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2285 data[l] != 0) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2286 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2287 l++; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2288 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2289 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2290 if (l == length) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2291 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2292 // Not a null-terminated plain string |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2293 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2294 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2295 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2296 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2297 std::string ignored; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2298 std::string s(reinterpret_cast<const char*>(data), l); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2299 ITagVisitor::Action action = visitor.VisitString |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2300 (ignored, parentTags, parentIndexes, tag, vr, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2301 Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions)); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2302 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2303 if (action != ITagVisitor::Action_None) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2304 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2305 LOG(WARNING) << "Cannot replace this string tag: " |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2306 << FromDcmtkBridge::GetTagName(element) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2307 << " (" << tag.Format() << ")"; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2308 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2309 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2310 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2311 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2312 { |
3195 | 2313 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2314 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2315 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2316 return; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2317 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2318 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2319 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2320 * Numeric types |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2321 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2322 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2323 case EVR_SL: // signed long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2324 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2325 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2326 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2327 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2328 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2329 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2330 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2331 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2332 Sint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2333 if (content.getSint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2334 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2335 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2336 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2337 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2338 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2339 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2340 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2341 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2342 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2343 case EVR_SS: // signed short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2344 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2345 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2346 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2347 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2348 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2349 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2350 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2351 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2352 Sint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2353 if (content.getSint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2354 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2355 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2356 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2357 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2358 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2359 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2360 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2361 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2362 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2363 case EVR_UL: // unsigned long |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2364 #if DCMTK_VERSION_NUMBER >= 362 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2365 case EVR_OL: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2366 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2367 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2368 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2369 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2370 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2371 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2372 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2373 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2374 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2375 Uint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2376 if (content.getUint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2377 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2378 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2379 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2380 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2381 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2382 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2383 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2384 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2385 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2386 case EVR_US: // unsigned short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2387 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2388 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2389 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2390 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2391 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2392 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2393 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2394 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2395 Uint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2396 if (content.getUint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2397 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2398 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2399 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2400 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2401 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2402 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2403 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2404 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2405 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2406 case EVR_FL: // float single-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2407 case EVR_OF: |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2408 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2409 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2410 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2411 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2412 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2413 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2414 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2415 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2416 Float32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2417 if (content.getFloat32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2418 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2419 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2420 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2421 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2422 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2423 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2424 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2425 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2426 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2427 case EVR_FD: // float double-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2428 #if DCMTK_VERSION_NUMBER >= 361 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2429 case EVR_OD: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2430 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2431 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2432 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2433 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2434 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2435 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2436 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2437 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2438 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2439 Float64 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2440 if (content.getFloat64(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2441 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2442 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2443 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2444 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2445 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2446 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2447 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2448 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2449 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2450 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2451 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2452 * Attribute tag. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2453 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2454 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2455 case EVR_AT: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2456 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2457 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2458 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2459 std::vector<DicomTag> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2460 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2461 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2462 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2463 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2464 DcmTagKey f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2465 if (content.getTagVal(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2466 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2467 DicomTag t(f.getGroup(), f.getElement()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2468 values.push_back(t); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2469 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2470 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2471 |
3195 | 2472 assert(vr == ValueRepresentation_AttributeTag); |
2473 visitor.VisitAttributes(parentTags, parentIndexes, tag, values); | |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2474 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2475 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2476 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2477 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2478 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2479 * Sequence types, should never occur at this point because of |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2480 * "element.isLeaf()". |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2481 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2482 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2483 case EVR_SQ: // sequence of items |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2484 { |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2485 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2486 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2487 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2488 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2489 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2490 * Internal to DCMTK. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2491 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2492 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2493 case EVR_xs: // SS or US depending on context |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2494 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2495 case EVR_na: // na="not applicable", for data which has no VR |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2496 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2497 case EVR_item: // used internally for items |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2498 case EVR_metainfo: // used internally for meta info datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2499 case EVR_dataset: // used internally for datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2500 case EVR_fileFormat: // used internally for DICOM files |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2501 case EVR_dicomDir: // used internally for DICOMDIR objects |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2502 case EVR_dirRecord: // used internally for DICOMDIR records |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2503 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2504 case EVR_pixelItem: // used internally for pixel items in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2505 case EVR_PixelData: // used internally for uncompressed pixeld data |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2506 case EVR_OverlayData: // used internally for overlay data |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2507 { |
3195 | 2508 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2509 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2510 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2511 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2512 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2513 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2514 * Default case. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2515 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2516 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2517 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2518 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2519 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2520 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2521 catch (boost::bad_lexical_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2522 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2523 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2524 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2525 catch (std::bad_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2526 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2527 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2528 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2529 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2530 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2531 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2532 static void ApplyVisitorToElement(DcmElement& element, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2533 ITagVisitor& visitor, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2534 const std::vector<DicomTag>& parentTags, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2535 const std::vector<size_t>& parentIndexes, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2536 Encoding encoding, |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2537 bool hasCodeExtensions) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2538 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2539 assert(parentTags.size() == parentIndexes.size()); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2540 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2541 DicomTag tag(FromDcmtkBridge::Convert(element.getTag())); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2542 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2543 if (element.isLeaf()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2544 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2545 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding, hasCodeExtensions); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2546 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2547 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2548 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2549 // "All subclasses of DcmElement except for DcmSequenceOfItems |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2550 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2551 // etc. are not." The following dynamic_cast is thus OK. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2552 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2553 |
3195 | 2554 if (sequence.card() == 0) |
2555 { | |
2556 visitor.VisitEmptySequence(parentTags, parentIndexes, tag); | |
2557 } | |
2558 else | |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2559 { |
3195 | 2560 std::vector<DicomTag> tags = parentTags; |
2561 std::vector<size_t> indexes = parentIndexes; | |
2562 tags.push_back(tag); | |
2563 indexes.push_back(0); | |
2564 | |
2565 for (unsigned long i = 0; i < sequence.card(); i++) | |
2566 { | |
2567 indexes.back() = static_cast<size_t>(i); | |
2568 DcmItem* child = sequence.getItem(i); | |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2569 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding, hasCodeExtensions); |
3195 | 2570 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2571 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2572 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2573 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2574 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2575 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2576 void FromDcmtkBridge::Apply(DcmItem& dataset, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2577 ITagVisitor& visitor, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2578 Encoding defaultEncoding) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2579 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2580 std::vector<DicomTag> parentTags; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2581 std::vector<size_t> parentIndexes; |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2582 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2583 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2584 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2585 } |
3882
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2586 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2587 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2588 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2589 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2590 DcmFileFormat& dicom) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2591 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2592 if (dicom.getDataset() == NULL) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2593 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2594 throw OrthancException(ErrorCode_InternalError); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2595 } |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2596 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2597 DcmDataset& dataset = *dicom.getDataset(); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2598 |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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2599 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
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2600 if (xfer == EXS_Unknown) |
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2601 { |
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2602 dataset.updateOriginalXfer(); |
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2603 xfer = dataset.getOriginalXfer(); |
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2604 if (xfer == EXS_Unknown) |
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2605 { |
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2606 throw OrthancException(ErrorCode_BadFileFormat, |
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2607 "Cannot determine the transfer syntax of the DICOM instance"); |
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2608 } |
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2609 } |
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2610 |
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2611 return FromDcmtkBridge::LookupOrthancTransferSyntax(target, xfer); |
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2612 } |
0 | 2613 } |
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2614 |
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2615 |
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2616 #include "./FromDcmtkBridge_TransferSyntaxes.impl.h" |