Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.cpp @ 4558:2f4d7ec9b993 db-changes
cont
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 04 Mar 2021 16:58:35 +0100 |
parents | b6d4b735eb4d |
children | 19b1921aee06 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
4045 | 41 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
43 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h" | |
44 #include "../../OrthancFramework/Sources/Logging.h" | |
45 #include "../../OrthancFramework/Sources/Toolbox.h" | |
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46 |
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47 #include "Database/ResourcesContent.h" |
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48 #include "OrthancConfiguration.h" |
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49 #include "Search/DatabaseLookup.h" |
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50 #include "Search/DicomTagConstraint.h" |
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51 #include "ServerContext.h" |
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52 #include "ServerIndexChange.h" |
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53 #include "ServerToolbox.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
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56 #include <boost/tuple/tuple.hpp> |
0 | 57 #include <stdio.h> |
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58 #include <stack> |
0 | 59 |
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60 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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61 |
62 | 62 namespace Orthanc |
0 | 63 { |
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64 static void CopyListToVector(std::vector<std::string>& target, |
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65 const std::list<std::string>& source) |
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66 { |
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67 target.resize(source.size()); |
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68 |
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69 size_t pos = 0; |
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70 |
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71 for (std::list<std::string>::const_iterator |
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72 it = source.begin(); it != source.end(); ++it) |
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73 { |
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74 target[pos] = *it; |
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75 pos ++; |
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76 } |
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77 } |
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78 |
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79 |
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80 class ServerIndex::Listener : public IDatabaseListener |
0 | 81 { |
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82 private: |
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83 struct FileToRemove |
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84 { |
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85 private: |
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86 std::string uuid_; |
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87 FileContentType type_; |
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88 |
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89 public: |
4205 | 90 explicit FileToRemove(const FileInfo& info) : |
91 uuid_(info.GetUuid()), | |
92 type_(info.GetContentType()) | |
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93 { |
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94 } |
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95 |
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96 const std::string& GetUuid() const |
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97 { |
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98 return uuid_; |
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99 } |
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100 |
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101 FileContentType GetContentType() const |
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102 { |
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103 return type_; |
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104 } |
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105 }; |
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106 |
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107 ServerContext& context_; |
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108 bool hasRemainingLevel_; |
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109 ResourceType remainingType_; |
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110 std::string remainingPublicId_; |
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111 std::list<FileToRemove> pendingFilesToRemove_; |
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112 std::list<ServerIndexChange> pendingChanges_; |
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113 uint64_t sizeOfFilesToRemove_; |
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114 bool insideTransaction_; |
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115 |
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116 void Reset() |
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117 { |
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118 sizeOfFilesToRemove_ = 0; |
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119 hasRemainingLevel_ = false; |
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120 pendingFilesToRemove_.clear(); |
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121 pendingChanges_.clear(); |
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122 } |
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123 |
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124 public: |
4205 | 125 explicit Listener(ServerContext& context) : |
126 context_(context), | |
127 insideTransaction_(false) | |
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128 { |
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129 Reset(); |
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130 assert(ResourceType_Patient < ResourceType_Study && |
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131 ResourceType_Study < ResourceType_Series && |
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132 ResourceType_Series < ResourceType_Instance); |
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133 } |
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134 |
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135 void StartTransaction() |
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136 { |
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137 Reset(); |
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138 insideTransaction_ = true; |
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139 } |
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140 |
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141 void EndTransaction() |
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142 { |
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143 insideTransaction_ = false; |
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144 } |
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145 |
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146 uint64_t GetSizeOfFilesToRemove() |
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147 { |
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148 return sizeOfFilesToRemove_; |
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149 } |
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150 |
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151 void CommitFilesToRemove() |
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152 { |
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153 for (std::list<FileToRemove>::const_iterator |
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154 it = pendingFilesToRemove_.begin(); |
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155 it != pendingFilesToRemove_.end(); ++it) |
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156 { |
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157 try |
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158 { |
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159 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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160 } |
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161 catch (OrthancException& e) |
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162 { |
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163 LOG(ERROR) << "Unable to remove an attachment from the storage area: " |
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164 << it->GetUuid() << " (type: " << EnumerationToString(it->GetContentType()) << ")"; |
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165 } |
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166 } |
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167 } |
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168 |
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169 void CommitChanges() |
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170 { |
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171 for (std::list<ServerIndexChange>::const_iterator |
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172 it = pendingChanges_.begin(); |
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173 it != pendingChanges_.end(); ++it) |
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174 { |
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175 context_.SignalChange(*it); |
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176 } |
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177 } |
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178 |
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179 virtual void SignalRemainingAncestor(ResourceType parentType, |
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180 const std::string& publicId) |
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181 { |
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182 LOG(TRACE) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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183 |
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184 if (hasRemainingLevel_) |
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185 { |
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186 if (parentType < remainingType_) |
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187 { |
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188 remainingType_ = parentType; |
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189 remainingPublicId_ = publicId; |
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190 } |
1158 | 191 } |
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192 else |
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193 { |
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194 hasRemainingLevel_ = true; |
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195 remainingType_ = parentType; |
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196 remainingPublicId_ = publicId; |
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197 } |
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198 } |
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199 |
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200 virtual void SignalFileDeleted(const FileInfo& info) |
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201 { |
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202 assert(Toolbox::IsUuid(info.GetUuid())); |
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203 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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204 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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205 } |
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206 |
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207 virtual void SignalChange(const ServerIndexChange& change) |
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208 { |
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209 LOG(TRACE) << "Change related to resource " << change.GetPublicId() << " of type " |
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210 << EnumerationToString(change.GetResourceType()) << ": " |
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211 << EnumerationToString(change.GetChangeType()); |
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212 |
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213 if (insideTransaction_) |
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214 { |
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215 pendingChanges_.push_back(change); |
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216 } |
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217 else |
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218 { |
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219 context_.SignalChange(change); |
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220 } |
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221 } |
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222 |
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223 bool HasRemainingLevel() const |
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224 { |
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225 return hasRemainingLevel_; |
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226 } |
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227 |
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228 ResourceType GetRemainingType() const |
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229 { |
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230 assert(HasRemainingLevel()); |
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231 return remainingType_; |
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232 } |
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233 |
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234 const std::string& GetRemainingPublicId() const |
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235 { |
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236 assert(HasRemainingLevel()); |
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237 return remainingPublicId_; |
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238 } |
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239 }; |
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241 | |
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242 class ServerIndex::Transaction |
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243 { |
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244 private: |
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245 ServerIndex& index_; |
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246 std::unique_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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247 bool isCommitted_; |
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249 public: |
4205 | 250 explicit Transaction(ServerIndex& index) : |
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251 index_(index), |
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252 isCommitted_(false) |
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253 { |
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255 index_.listener_->StartTransaction(); |
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256 } |
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257 |
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258 ~Transaction() |
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259 { |
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260 index_.listener_->EndTransaction(); |
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261 |
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262 if (!isCommitted_) |
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263 { |
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264 transaction_->Rollback(); |
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265 } |
278
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266 } |
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267 |
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268 void Commit(uint64_t sizeOfAddedFiles) |
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269 { |
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270 if (!isCommitted_) |
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271 { |
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272 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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273 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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274 |
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275 transaction_->Commit(delta); |
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276 |
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277 // We can remove the files once the SQLite transaction has |
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278 // been successfully committed. Some files might have to be |
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279 // deleted because of recycling. |
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280 index_.listener_->CommitFilesToRemove(); |
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281 |
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282 // Send all the pending changes to the Orthanc plugins |
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283 index_.listener_->CommitChanges(); |
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284 |
278
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285 isCommitted_ = true; |
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286 } |
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287 } |
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288 }; |
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289 |
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290 |
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291 class ServerIndex::UnstableResourcePayload |
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292 { |
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293 private: |
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294 ResourceType type_; |
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295 std::string publicId_; |
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296 boost::posix_time::ptime time_; |
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297 |
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298 public: |
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299 UnstableResourcePayload() : type_(ResourceType_Instance) |
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300 { |
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301 } |
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302 |
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303 UnstableResourcePayload(Orthanc::ResourceType type, |
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304 const std::string& publicId) : |
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305 type_(type), |
4205 | 306 publicId_(publicId), |
307 time_(boost::posix_time::second_clock::local_time()) | |
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308 { |
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309 } |
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310 |
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311 unsigned int GetAge() const |
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312 { |
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313 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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314 } |
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315 |
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316 ResourceType GetResourceType() const |
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317 { |
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318 return type_; |
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319 } |
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320 |
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321 const std::string& GetPublicId() const |
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322 { |
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323 return publicId_; |
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324 } |
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325 }; |
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326 |
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327 |
3027 | 328 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
329 { | |
330 private: | |
331 class TagInfo | |
332 { | |
333 private: | |
334 ResourceType level_; | |
335 DicomTagType type_; | |
336 | |
337 public: | |
338 TagInfo() | |
339 { | |
340 } | |
341 | |
342 TagInfo(ResourceType level, | |
343 DicomTagType type) : | |
344 level_(level), | |
345 type_(type) | |
346 { | |
347 } | |
348 | |
349 ResourceType GetLevel() const | |
350 { | |
351 return level_; | |
352 } | |
353 | |
354 DicomTagType GetType() const | |
355 { | |
356 return type_; | |
357 } | |
358 }; | |
359 | |
360 typedef std::map<DicomTag, TagInfo> Registry; | |
361 | |
362 | |
363 Registry registry_; | |
364 | |
365 void LoadTags(ResourceType level) | |
366 { | |
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367 { |
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368 const DicomTag* tags = NULL; |
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369 size_t size; |
3027 | 370 |
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371 ServerToolbox::LoadIdentifiers(tags, size, level); |
3027 | 372 |
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373 for (size_t i = 0; i < size; i++) |
3027 | 374 { |
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375 if (registry_.find(tags[i]) == registry_.end()) |
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376 { |
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377 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); |
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378 } |
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379 else |
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380 { |
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381 // These patient-level tags are copied in the study level |
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382 assert(level == ResourceType_Study && |
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383 (tags[i] == DICOM_TAG_PATIENT_ID || |
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384 tags[i] == DICOM_TAG_PATIENT_NAME || |
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385 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); |
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386 } |
3027 | 387 } |
388 } | |
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389 |
3027 | 390 { |
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391 std::set<DicomTag> tags; |
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392 DicomMap::GetMainDicomTags(tags, level); |
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393 |
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394 for (std::set<DicomTag>::const_iterator |
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395 tag = tags.begin(); tag != tags.end(); ++tag) |
3027 | 396 { |
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397 if (registry_.find(*tag) == registry_.end()) |
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398 { |
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399 registry_[*tag] = TagInfo(level, DicomTagType_Main); |
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400 } |
3027 | 401 } |
402 } | |
403 } | |
404 | |
405 public: | |
406 MainDicomTagsRegistry() | |
407 { | |
408 LoadTags(ResourceType_Patient); | |
409 LoadTags(ResourceType_Study); | |
410 LoadTags(ResourceType_Series); | |
411 LoadTags(ResourceType_Instance); | |
412 } | |
413 | |
414 void LookupTag(ResourceType& level, | |
415 DicomTagType& type, | |
416 const DicomTag& tag) const | |
417 { | |
418 Registry::const_iterator it = registry_.find(tag); | |
419 | |
420 if (it == registry_.end()) | |
421 { | |
422 // Default values | |
423 level = ResourceType_Instance; | |
424 type = DicomTagType_Generic; | |
425 } | |
426 else | |
427 { | |
428 level = it->second.GetLevel(); | |
429 type = it->second.GetType(); | |
430 } | |
431 } | |
432 }; | |
433 | |
434 | |
212 | 435 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 436 const std::string& uuid, |
202 | 437 ResourceType expectedType) |
0 | 438 { |
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439 boost::mutex::scoped_lock lock(mutex_); |
201
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440 |
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441 Transaction t(*this); |
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442 |
202 | 443 int64_t id; |
444 ResourceType type; | |
1294 | 445 if (!db_.LookupResource(id, type, uuid) || |
202 | 446 expectedType != type) |
0 | 447 { |
448 return false; | |
449 } | |
202 | 450 |
1247 | 451 db_.DeleteResource(id); |
0 | 452 |
202 | 453 if (listener_->HasRemainingLevel()) |
0 | 454 { |
4205 | 455 ResourceType remainingType = listener_->GetRemainingType(); |
456 const std::string& remainingUuid = listener_->GetRemainingPublicId(); | |
0 | 457 |
458 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
4205 | 459 target["RemainingAncestor"]["Path"] = GetBasePath(remainingType, remainingUuid); |
460 target["RemainingAncestor"]["Type"] = EnumerationToString(remainingType); | |
461 target["RemainingAncestor"]["ID"] = remainingUuid; | |
0 | 462 } |
463 else | |
464 { | |
465 target["RemainingAncestor"] = Json::nullValue; | |
466 } | |
467 | |
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468 t.Commit(0); |
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469 |
0 | 470 return true; |
471 } | |
472 | |
473 | |
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474 void ServerIndex::FlushThread(ServerIndex* that, |
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475 unsigned int threadSleep) |
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476 { |
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477 // By default, wait for 10 seconds before flushing |
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478 unsigned int sleep = 10; |
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479 |
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480 try |
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481 { |
744 | 482 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 483 std::string sleepString; |
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484 |
1247 | 485 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 486 Toolbox::IsInteger(sleepString)) |
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487 { |
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488 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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489 } |
511
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490 } |
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491 catch (boost::bad_lexical_cast&) |
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492 { |
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493 } |
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494 |
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495 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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496 |
511
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497 unsigned int count = 0; |
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498 |
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499 while (!that->done_) |
206
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500 { |
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501 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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502 count++; |
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503 if (count < sleep) |
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504 { |
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505 continue; |
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506 } |
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507 |
2217 | 508 Logging::Flush(); |
509 | |
511
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510 boost::mutex::scoped_lock lock(that->mutex_); |
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511 |
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512 try |
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513 { |
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514 that->db_.FlushToDisk(); |
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515 } |
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516 catch (OrthancException&) |
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517 { |
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518 LOG(ERROR) << "Cannot flush the SQLite database to the disk (is your filesystem full?)"; |
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519 } |
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520 |
511
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521 count = 0; |
206
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522 } |
511
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523 |
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524 LOG(INFO) << "Stopping the database flushing thread"; |
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525 } |
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526 |
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527 |
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528 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 529 const DicomMap& dicomSummary) |
530 { | |
531 try | |
532 { | |
656 | 533 const DicomValue* value; |
534 const DicomValue* value2; | |
535 | |
433 | 536 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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537 !value->IsNull() && |
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538 !value->IsBinary() && |
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539 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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540 !value2->IsNull() && |
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541 !value2->IsBinary()) |
433 | 542 { |
543 // Patch for series with temporal positions thanks to Will Ryder | |
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544 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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545 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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546 target = imagesInAcquisition * countTemporalPositions; |
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547 return (target > 0); |
433 | 548 } |
549 | |
550 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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551 !value->IsNull() && |
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552 !value->IsBinary() && |
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553 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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554 !value2->IsBinary() && |
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555 !value2->IsNull()) |
433 | 556 { |
557 // Support of Cardio-PET images | |
1737
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558 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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559 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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560 target = numberOfSlices * numberOfTimeSlices; |
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561 return (target > 0); |
433 | 562 } |
563 | |
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564 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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565 !value->IsNull() && |
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566 !value->IsBinary()) |
433 | 567 { |
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568 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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569 return (target > 0); |
433 | 570 } |
571 } | |
1737
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572 catch (OrthancException&) |
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573 { |
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574 } |
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575 catch (boost::bad_lexical_cast&) |
433 | 576 { |
577 } | |
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578 |
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579 return false; |
433 | 580 } |
581 | |
582 | |
1237 | 583 |
584 | |
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585 static bool LookupStringMetadata(std::string& result, |
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586 const std::map<MetadataType, std::string>& metadata, |
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587 MetadataType type) |
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588 { |
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589 std::map<MetadataType, std::string>::const_iterator found = metadata.find(type); |
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590 |
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591 if (found == metadata.end()) |
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592 { |
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593 return false; |
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594 } |
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595 else |
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596 { |
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597 result = found->second; |
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598 return true; |
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599 } |
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600 } |
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601 |
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602 |
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603 static bool LookupIntegerMetadata(int64_t& result, |
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604 const std::map<MetadataType, std::string>& metadata, |
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605 MetadataType type) |
1237 | 606 { |
1238 | 607 std::string s; |
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608 if (!LookupStringMetadata(s, metadata, type)) |
1237 | 609 { |
610 return false; | |
611 } | |
612 | |
613 try | |
614 { | |
1238 | 615 result = boost::lexical_cast<int64_t>(s); |
1237 | 616 return true; |
617 } | |
618 catch (boost::bad_lexical_cast&) | |
619 { | |
620 return false; | |
621 } | |
622 } | |
623 | |
624 | |
1297 | 625 void ServerIndex::LogChange(int64_t internalId, |
626 ChangeType changeType, | |
627 ResourceType resourceType, | |
628 const std::string& publicId) | |
629 { | |
630 ServerIndexChange change(changeType, resourceType, publicId); | |
1300
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631 |
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632 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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633 { |
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634 db_.LogChange(internalId, change); |
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635 } |
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636 |
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637 assert(listener_.get() != NULL); |
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638 listener_->SignalChange(change); |
1297 | 639 } |
640 | |
1237 | 641 |
642 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
643 { | |
644 std::string oldValue; | |
645 | |
1247 | 646 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 647 { |
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648 uint64_t oldNumber; |
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649 |
1237 | 650 try |
651 { | |
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652 oldNumber = boost::lexical_cast<uint64_t>(oldValue); |
1237 | 653 } |
654 catch (boost::bad_lexical_cast&) | |
655 { | |
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656 LOG(ERROR) << "Cannot read the global sequence " |
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657 << boost::lexical_cast<std::string>(property) << ", resetting it"; |
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658 oldNumber = 0; |
1237 | 659 } |
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660 |
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661 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
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662 return oldNumber + 1; |
1237 | 663 } |
664 else | |
665 { | |
666 // Initialize the sequence at "1" | |
1247 | 667 db_.SetGlobalProperty(property, "1"); |
1237 | 668 return 1; |
669 } | |
670 } | |
671 | |
672 | |
4554 | 673 bool ServerIndex::IsUnstableResource(int64_t id) |
674 { | |
675 return unstableResources_.Contains(id); | |
676 } | |
677 | |
1237 | 678 |
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|
679 ServerIndex::ServerIndex(ServerContext& context, |
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680 IDatabaseWrapper& db, |
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681 unsigned int threadSleep) : |
511
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682 done_(false), |
1247 | 683 db_(db), |
269
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684 maximumStorageSize_(0), |
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685 maximumPatients_(0), |
4551
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686 mainDicomTagsRegistry_(new MainDicomTagsRegistry), |
4554 | 687 maxRetries_(10) |
186
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688 { |
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689 listener_.reset(new Listener(context)); |
1247 | 690 db_.SetListener(*listener_); |
180
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691 |
269
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692 // Initial recycling if the parameters have changed since the last |
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693 // execution of Orthanc |
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694 StandaloneRecycling(); |
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695 |
1306
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IDatabaseWrapper::HasFlushToDisk()
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696 if (db.HasFlushToDisk()) |
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IDatabaseWrapper::HasFlushToDisk()
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697 { |
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698 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
1306
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IDatabaseWrapper::HasFlushToDisk()
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699 } |
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IDatabaseWrapper::HasFlushToDisk()
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700 |
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701 unstableResourcesMonitorThread_ = boost::thread |
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702 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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703 } |
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704 |
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705 |
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706 |
206
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707 ServerIndex::~ServerIndex() |
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708 { |
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709 if (!done_) |
511
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710 { |
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711 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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712 Stop(); |
511
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713 } |
0 | 714 } |
715 | |
716 | |
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717 |
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718 void ServerIndex::Stop() |
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719 { |
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720 if (!done_) |
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721 { |
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722 done_ = true; |
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723 |
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724 if (db_.HasFlushToDisk() && |
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725 flushThread_.joinable()) |
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726 { |
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727 flushThread_.join(); |
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728 } |
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|
729 |
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730 if (unstableResourcesMonitorThread_.joinable()) |
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731 { |
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732 unstableResourcesMonitorThread_.join(); |
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733 } |
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734 } |
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735 } |
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|
736 |
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|
737 |
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738 static void SetInstanceMetadata(ResourcesContent& content, |
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739 std::map<MetadataType, std::string>& instanceMetadata, |
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740 int64_t instance, |
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741 MetadataType metadata, |
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742 const std::string& value) |
2188 | 743 { |
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744 content.AddMetadata(instance, metadata, value); |
2188 | 745 instanceMetadata[metadata] = value; |
746 } | |
747 | |
748 | |
3080
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749 void ServerIndex::SignalNewResource(ChangeType changeType, |
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750 ResourceType level, |
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|
751 const std::string& publicId, |
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752 int64_t internalId) |
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|
753 { |
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|
754 ServerIndexChange change(changeType, level, publicId); |
1a75595d8e44
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|
755 db_.LogChange(internalId, change); |
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|
756 |
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changeset
|
757 assert(listener_.get() != NULL); |
1a75595d8e44
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758 listener_->SignalChange(change); |
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|
759 } |
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diff
changeset
|
760 |
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|
761 |
1006
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|
762 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
4505
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|
763 const DicomMap& dicomSummary, |
3813
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|
764 const Attachments& attachments, |
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765 const MetadataMap& metadata, |
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766 const DicomInstanceOrigin& origin, |
4499 | 767 bool overwrite, |
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|
768 bool hasTransferSyntax, |
4507
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769 DicomTransferSyntax transferSyntax, |
4499 | 770 bool hasPixelDataOffset, |
771 uint64_t pixelDataOffset) | |
0 | 772 { |
206
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773 boost::mutex::scoped_lock lock(mutex_); |
0 | 774 |
3090
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775 int64_t expectedInstances; |
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776 const bool hasExpectedInstances = |
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777 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
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778 |
1006
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779 instanceMetadata.clear(); |
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|
780 |
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781 DicomInstanceHasher hasher(dicomSummary); |
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782 const std::string hashPatient = hasher.HashPatient(); |
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783 const std::string hashStudy = hasher.HashStudy(); |
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784 const std::string hashSeries = hasher.HashSeries(); |
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|
785 const std::string hashInstance = hasher.HashInstance(); |
3080
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786 |
0 | 787 try |
788 { | |
278
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changeset
|
789 Transaction t(*this); |
0 | 790 |
3080
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791 IDatabaseWrapper::CreateInstanceResult status; |
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792 int64_t instanceId; |
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|
793 |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
794 // Check whether this instance is already stored |
3080
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|
795 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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796 hashStudy, hashSeries, hashInstance)) |
0 | 797 { |
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798 // The instance already exists |
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|
799 |
3813
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|
800 if (overwrite) |
3082
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801 { |
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802 // Overwrite the old instance |
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|
803 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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804 db_.DeleteResource(instanceId); |
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805 |
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|
806 // Re-create the instance, now that the old one is removed |
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807 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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808 hashStudy, hashSeries, hashInstance)) |
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|
809 { |
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changeset
|
810 throw OrthancException(ErrorCode_InternalError); |
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|
811 } |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
812 } |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
813 else |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
814 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
815 // Do nothing if the instance already exists and overwriting is disabled |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
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|
816 db_.GetAllMetadata(instanceMetadata, instanceId); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
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|
817 return StoreStatus_AlreadyStored; |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
818 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
819 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
820 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
821 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
822 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
823 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
824 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
825 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
826 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
827 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
828 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
829 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
830 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
831 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
832 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
833 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
834 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 835 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
836 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
837 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
838 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
839 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
840 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
841 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
842 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
843 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
844 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
845 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
846 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
847 |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
848 // Ensure there is enough room in the storage for the new instance |
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preparing ServerIndex for recycling
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264
diff
changeset
|
849 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
850 for (Attachments::const_iterator it = attachments.begin(); |
656 | 851 it != attachments.end(); ++it) |
268
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
852 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
853 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
854 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
855 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
856 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
857 |
74e3e48aa9bd
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parents:
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diff
changeset
|
858 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
859 // Attach the files to the newly created instance |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
860 for (Attachments::const_iterator it = attachments.begin(); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
861 it != attachments.end(); ++it) |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
862 { |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
863 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
864 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
865 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
866 |
0 | 867 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
868 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
869 |
3086
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diff
changeset
|
870 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
871 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
872 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
873 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
874 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
875 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
876 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
877 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
878 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
879 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
880 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
881 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
882 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
883 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
884 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
885 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
886 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
887 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
888 |
3086
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
889 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
890 // Attach the user-specified metadata |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
891 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
892 for (MetadataMap::const_iterator |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
893 it = metadata.begin(); it != metadata.end(); ++it) |
74e3e48aa9bd
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diff
changeset
|
894 { |
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grouping the setting of metadata
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parents:
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diff
changeset
|
895 switch (it->first.first) |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
896 { |
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grouping the setting of metadata
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parents:
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diff
changeset
|
897 case ResourceType_Patient: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
898 content.AddMetadata(status.patientId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
899 break; |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
900 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
901 case ResourceType_Study: |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
902 content.AddMetadata(status.studyId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
903 break; |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
904 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
905 case ResourceType_Series: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
906 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
907 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
908 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
909 case ResourceType_Instance: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
910 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
911 it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
912 break; |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
913 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
914 default: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
915 throw OrthancException(ErrorCode_ParameterOutOfRange); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
916 } |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
917 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
918 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
919 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
920 // Attach the auto-computed metadata for the patient/study/series levels |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
921 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
922 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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3083
diff
changeset
|
923 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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3083
diff
changeset
|
924 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
925 |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
926 if (status.isNewSeries_) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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3087
diff
changeset
|
927 { |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
928 if (hasExpectedInstances) |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
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parents:
4437
diff
changeset
|
929 { |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
930 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
931 boost::lexical_cast<std::string>(expectedInstances)); |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
932 } |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
933 |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
934 // New in Orthanc 1.9.0 |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
935 content.AddMetadata(status.seriesId_, MetadataType_RemoteAet, |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
936 origin.GetRemoteAetC()); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
937 } |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
938 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
939 |
3086
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parents:
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diff
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|
940 // Attach the auto-computed metadata for the instance level, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
941 // reflecting these additions into the input metadata map |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
942 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
943 MetadataType_Instance_ReceptionDate, now); |
4460
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New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
944 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_RemoteAet, |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
945 origin.GetRemoteAetC()); |
3086
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grouping the setting of metadata
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parents:
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diff
changeset
|
946 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
947 EnumerationToString(origin.GetRequestOrigin())); |
ac69c9f76c71
refactoring ServerIndex::Store()
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diff
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|
948 |
ac69c9f76c71
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changeset
|
949 |
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refactoring ServerIndex::Store()
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parents:
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diff
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|
950 if (hasTransferSyntax) |
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
951 { |
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refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
952 // New in Orthanc 1.2.0 |
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
953 SetInstanceMetadata(content, instanceMetadata, instanceId, |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
954 MetadataType_Instance_TransferSyntax, |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
955 GetTransferSyntaxUid(transferSyntax)); |
4506
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refactoring ServerIndex::Store()
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diff
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|
956 } |
3086
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diff
changeset
|
957 |
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changeset
|
958 { |
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changeset
|
959 std::string s; |
74e3e48aa9bd
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parents:
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|
960 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
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|
961 if (origin.LookupRemoteIp(s)) |
3086
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|
962 { |
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grouping the setting of metadata
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diff
changeset
|
963 // New in Orthanc 1.4.0 |
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|
964 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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|
965 MetadataType_Instance_RemoteIp, s); |
74e3e48aa9bd
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|
966 } |
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changeset
|
967 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
968 if (origin.LookupCalledAet(s)) |
3086
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
969 { |
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parents:
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changeset
|
970 // New in Orthanc 1.4.0 |
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changeset
|
971 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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diff
changeset
|
972 MetadataType_Instance_CalledAet, s); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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3083
diff
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|
973 } |
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diff
changeset
|
974 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
975 if (origin.LookupHttpUsername(s)) |
3086
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parents:
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diff
changeset
|
976 { |
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diff
changeset
|
977 // New in Orthanc 1.4.0 |
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diff
changeset
|
978 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
979 MetadataType_Instance_HttpUsername, s); |
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parents:
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diff
changeset
|
980 } |
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diff
changeset
|
981 } |
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|
982 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4507
diff
changeset
|
983 if (hasPixelDataOffset) |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
984 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
985 // New in Orthanc 1.9.1 |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4507
diff
changeset
|
986 SetInstanceMetadata(content, instanceMetadata, instanceId, |
5b929e6b3c36
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parents:
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diff
changeset
|
987 MetadataType_Instance_PixelDataOffset, |
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parents:
4507
diff
changeset
|
988 boost::lexical_cast<std::string>(pixelDataOffset)); |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
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diff
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|
989 } |
3086
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diff
changeset
|
990 |
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diff
changeset
|
991 const DicomValue* value; |
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parents:
3083
diff
changeset
|
992 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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parents:
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diff
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|
993 !value->IsNull() && |
74e3e48aa9bd
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parents:
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diff
changeset
|
994 !value->IsBinary()) |
74e3e48aa9bd
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parents:
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diff
changeset
|
995 { |
74e3e48aa9bd
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parents:
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diff
changeset
|
996 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
997 MetadataType_Instance_SopClassUid, value->GetContent()); |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
998 } |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
999 |
74e3e48aa9bd
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diff
changeset
|
1000 |
74e3e48aa9bd
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diff
changeset
|
1001 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
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|
1002 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
74e3e48aa9bd
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parents:
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diff
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|
1003 { |
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parents:
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diff
changeset
|
1004 if (!value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
1005 !value->IsBinary()) |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
1006 { |
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parents:
3083
diff
changeset
|
1007 SetInstanceMetadata(content, instanceMetadata, instanceId, |
4263
61a2bedbae80
sanitize IndexInSeries (we've seen spaces there !)
Alain Mazy <alain@mazy.be>
parents:
4205
diff
changeset
|
1008 MetadataType_Instance_IndexInSeries, Toolbox::StripSpaces(value->GetContent())); |
3086
74e3e48aa9bd
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diff
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|
1009 } |
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diff
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|
1010 } |
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diff
changeset
|
1011 |
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diff
changeset
|
1012 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
3082
diff
changeset
|
1013 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
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|
1014 } |
3086
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|
1015 |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
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|
1016 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
1017 // Check whether the series of this new instance is now completed |
3187
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refactoring retrieval of metadata from database
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parents:
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diff
changeset
|
1018 int64_t expectedNumberOfInstances; |
4bbadcd03966
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diff
changeset
|
1019 if (ComputeExpectedNumberOfInstances(expectedNumberOfInstances, dicomSummary)) |
205
6ab754744446
logging of completed series
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diff
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|
1020 { |
4554 | 1021 SeriesStatus seriesStatus = GetSeriesStatus(db_, status.seriesId_, expectedNumberOfInstances); |
3187
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changeset
|
1022 if (seriesStatus == SeriesStatus_Complete) |
4bbadcd03966
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diff
changeset
|
1023 { |
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diff
changeset
|
1024 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
4bbadcd03966
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|
1025 } |
205
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1026 } |
3087 | 1027 |
205
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|
1028 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1029 // Mark the parent resources of this instance as unstable |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
1030 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
1031 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
1032 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1033 |
278
771f12042be9
more efficient determination of storage size for recycling
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273
diff
changeset
|
1034 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
1035 |
0 | 1036 return StoreStatus_Success; |
1037 } | |
62 | 1038 catch (OrthancException& e) |
0 | 1039 { |
1247 | 1040 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 1041 } |
1042 | |
1043 return StoreStatus_Failure; | |
1044 } | |
1045 | |
1046 | |
4554 | 1047 SeriesStatus ServerIndex::GetSeriesStatus(IDatabaseWrapper& db, |
1048 int64_t id, | |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
1049 int64_t expectedNumberOfInstances) |
199 | 1050 { |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1051 std::list<std::string> values; |
4554 | 1052 db.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries); |
199 | 1053 |
1238 | 1054 std::set<int64_t> instances; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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diff
changeset
|
1055 |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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3090
diff
changeset
|
1056 for (std::list<std::string>::const_iterator |
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
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parents:
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1057 it = values.begin(); it != values.end(); ++it) |
199 | 1058 { |
1238 | 1059 int64_t index; |
3091
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1060 |
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1061 try |
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1062 { |
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1063 index = boost::lexical_cast<int64_t>(*it); |
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1064 } |
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1065 catch (boost::bad_lexical_cast&) |
199 | 1066 { |
1067 return SeriesStatus_Unknown; | |
1068 } | |
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1069 |
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1070 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1071 { |
1072 // Out-of-range instance index | |
1073 return SeriesStatus_Inconsistent; | |
1074 } | |
1075 | |
1076 if (instances.find(index) != instances.end()) | |
1077 { | |
1078 // Twice the same instance index | |
1079 return SeriesStatus_Inconsistent; | |
1080 } | |
1081 | |
1082 instances.insert(index); | |
1083 } | |
1084 | |
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1085 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1086 { |
1087 return SeriesStatus_Complete; | |
1088 } | |
1089 else | |
1090 { | |
1091 return SeriesStatus_Missing; | |
1092 } | |
1093 } | |
1094 | |
1095 | |
202 | 1096 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
4554 | 1097 IDatabaseWrapper& db, |
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1098 int64_t resourceId, |
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1099 ResourceType resourceType) |
198
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1100 { |
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1101 DicomMap tags; |
4554 | 1102 db.GetMainDicomTags(tags, resourceId); |
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1103 |
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1104 if (resourceType == ResourceType_Study) |
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1105 { |
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1106 DicomMap t1, t2; |
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1107 tags.ExtractStudyInformation(t1); |
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1108 tags.ExtractPatientInformation(t2); |
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1109 |
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1110 target["MainDicomTags"] = Json::objectValue; |
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1111 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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1112 |
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1113 target["PatientMainDicomTags"] = Json::objectValue; |
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1114 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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1115 } |
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1116 else |
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1117 { |
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1118 target["MainDicomTags"] = Json::objectValue; |
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1119 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1120 } |
198
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1121 } |
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1122 |
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1123 |
1244 | 1124 template <typename T> |
1125 static void FormatLog(Json::Value& target, | |
1126 const std::list<T>& log, | |
1127 const std::string& name, | |
1128 bool done, | |
3105
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1129 int64_t since, |
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1130 bool hasLast, |
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1131 int64_t last) |
1240 | 1132 { |
1133 Json::Value items = Json::arrayValue; | |
1244 | 1134 for (typename std::list<T>::const_iterator |
1304 | 1135 it = log.begin(); it != log.end(); ++it) |
1240 | 1136 { |
1137 Json::Value item; | |
1138 it->Format(item); | |
1139 items.append(item); | |
1140 } | |
1141 | |
1142 target = Json::objectValue; | |
1244 | 1143 target[name] = items; |
1240 | 1144 target["Done"] = done; |
1145 | |
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1146 if (!hasLast) |
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1147 { |
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1148 // Best-effort guess of the last index in the sequence |
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1149 if (log.empty()) |
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1150 { |
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1151 last = since; |
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1152 } |
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1153 else |
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1154 { |
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1155 last = log.back().GetSeq(); |
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1156 } |
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1157 } |
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1158 |
1240 | 1159 target["Last"] = static_cast<int>(last); |
1160 } | |
1161 | |
1162 | |
231 | 1163 void ServerIndex::LogExportedResource(const std::string& publicId, |
1164 const std::string& remoteModality) | |
1165 { | |
1166 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1167 Transaction transaction(*this); |
231 | 1168 |
1169 int64_t id; | |
1170 ResourceType type; | |
1294 | 1171 if (!db_.LookupResource(id, type, publicId)) |
231 | 1172 { |
2573
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1173 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1174 } |
1175 | |
1176 std::string patientId; | |
1177 std::string studyInstanceUid; | |
1178 std::string seriesInstanceUid; | |
1179 std::string sopInstanceUid; | |
1180 | |
1181 int64_t currentId = id; | |
1182 ResourceType currentType = type; | |
1183 | |
1184 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1185 bool done = false; | |
1186 while (!done) | |
1187 { | |
1188 DicomMap map; | |
1247 | 1189 db_.GetMainDicomTags(map, currentId); |
231 | 1190 |
1191 switch (currentType) | |
1192 { | |
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1193 case ResourceType_Patient: |
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1194 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1195 { |
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1196 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1197 } |
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1198 done = true; |
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1199 break; |
231 | 1200 |
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1201 case ResourceType_Study: |
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1202 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1203 { |
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1204 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1205 } |
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1206 currentType = ResourceType_Patient; |
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1207 break; |
231 | 1208 |
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1209 case ResourceType_Series: |
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1210 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1211 { |
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1212 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1213 } |
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1214 currentType = ResourceType_Study; |
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1215 break; |
231 | 1216 |
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1217 case ResourceType_Instance: |
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1218 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1219 { |
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1220 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1221 } |
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1222 currentType = ResourceType_Series; |
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1223 break; |
231 | 1224 |
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1225 default: |
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1226 throw OrthancException(ErrorCode_InternalError); |
231 | 1227 } |
1228 | |
1229 // If we have not reached the Patient level, find the parent of | |
1230 // the current resource | |
1231 if (!done) | |
1232 { | |
1247 | 1233 bool ok = db_.LookupParent(currentId, currentId); |
4121 | 1234 (void) ok; // Remove warning about unused variable in release builds |
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1235 assert(ok); |
231 | 1236 } |
1237 } | |
1238 | |
1246 | 1239 ExportedResource resource(-1, |
1240 type, | |
1241 publicId, | |
1242 remoteModality, | |
2475
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1243 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1244 patientId, |
1245 studyInstanceUid, | |
1246 seriesInstanceUid, | |
1247 sopInstanceUid); | |
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1248 |
1247 | 1249 db_.LogExportedResource(resource); |
1310
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1250 transaction.Commit(0); |
231 | 1251 } |
1252 | |
1253 | |
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1254 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1255 { |
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1256 if (maximumStorageSize_ != 0) |
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1257 { |
3020
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1258 assert(maximumStorageSize_ >= instanceSize); |
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1259 |
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1260 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
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1261 { |
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1262 return true; |
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1263 } |
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1264 } |
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1265 |
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1266 if (maximumPatients_ != 0) |
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1267 { |
1247 | 1268 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1269 if (patientCount > maximumPatients_) |
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1270 { |
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1271 return true; |
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1272 } |
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1273 } |
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1274 |
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1275 return false; |
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1276 } |
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1277 |
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1278 |
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1279 void ServerIndex::Recycle(uint64_t instanceSize, |
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1280 const std::string& newPatientId) |
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1281 { |
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1282 if (!IsRecyclingNeeded(instanceSize)) |
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1283 { |
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1284 return; |
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1285 } |
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1286 |
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1287 // Check whether other DICOM instances from this patient are |
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1288 // already stored |
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1289 int64_t patientToAvoid; |
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1290 ResourceType type; |
1294 | 1291 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1292 |
269
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1293 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1294 { |
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1295 throw OrthancException(ErrorCode_InternalError); |
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1296 } |
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1297 |
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1298 // Iteratively select patient to remove until there is enough |
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1299 // space in the DICOM store |
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1300 int64_t patientToRecycle; |
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1301 while (true) |
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1302 { |
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1303 // If other instances of this patient are already in the store, |
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1304 // we must avoid to recycle them |
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1305 bool ok = hasPatientToAvoid ? |
1247 | 1306 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1307 db_.SelectPatientToRecycle(patientToRecycle); | |
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1308 |
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1309 if (!ok) |
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1310 { |
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1311 throw OrthancException(ErrorCode_FullStorage); |
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1312 } |
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1313 |
4268
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1314 LOG(TRACE) << "Recycling one patient"; |
1247 | 1315 db_.DeleteResource(patientToRecycle); |
269
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1316 |
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1317 if (!IsRecyclingNeeded(instanceSize)) |
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1318 { |
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1319 // OK, we're done |
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1320 break; |
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1321 } |
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1322 } |
268
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1323 } |
269
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1324 |
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1325 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1326 { |
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1327 boost::mutex::scoped_lock lock(mutex_); |
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1328 maximumPatients_ = count; |
270
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1329 |
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1330 if (count == 0) |
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1331 { |
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1332 LOG(WARNING) << "No limit on the number of stored patients"; |
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1333 } |
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1334 else |
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1335 { |
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1336 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1337 } |
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1338 |
269
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1339 StandaloneRecycling(); |
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1340 } |
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1341 |
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1342 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1343 { |
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1344 boost::mutex::scoped_lock lock(mutex_); |
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1345 maximumStorageSize_ = size; |
270
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1346 |
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1347 if (size == 0) |
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1348 { |
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1349 LOG(WARNING) << "No limit on the size of the storage area"; |
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1350 } |
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1351 else |
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1352 { |
440
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1353 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1354 } |
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1355 |
269
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1356 StandaloneRecycling(); |
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1357 } |
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1358 |
2825
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1359 |
272
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1360 void ServerIndex::StandaloneRecycling() |
269
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1361 { |
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1362 // WARNING: No mutex here, do not include this as a public method |
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1363 Transaction t(*this); |
269
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1364 Recycle(0, ""); |
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1365 t.Commit(0); |
269
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1366 } |
272
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1367 |
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1368 |
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1369 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1370 { |
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1371 boost::mutex::scoped_lock lock(mutex_); |
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1372 |
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1373 // Lookup for the requested resource |
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1374 int64_t id; |
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1375 ResourceType type; |
1294 | 1376 if (!db_.LookupResource(id, type, publicId) || |
272
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1377 type != ResourceType_Patient) |
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1378 { |
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1379 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1380 } |
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1381 |
1247 | 1382 return db_.IsProtectedPatient(id); |
272
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1383 } |
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1384 |
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1385 |
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1386 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1387 bool isProtected) |
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1388 { |
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|
1389 boost::mutex::scoped_lock lock(mutex_); |
1310
61ce8147f30d
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1390 Transaction transaction(*this); |
272
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1391 |
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1392 // Lookup for the requested resource |
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1393 int64_t id; |
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1394 ResourceType type; |
1294 | 1395 if (!db_.LookupResource(id, type, publicId) || |
272
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1396 type != ResourceType_Patient) |
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1397 { |
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1398 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1399 } |
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1400 |
1247 | 1401 db_.SetProtectedPatient(id, isProtected); |
1310
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1402 transaction.Commit(0); |
272
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1403 |
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1404 if (isProtected) |
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1405 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1406 else |
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1407 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1408 } |
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1409 |
304 | 1410 |
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1411 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1412 const std::string& publicId) |
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1413 { |
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1414 result.clear(); |
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1415 |
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1416 boost::mutex::scoped_lock lock(mutex_); |
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1417 |
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1418 ResourceType type; |
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1419 int64_t resource; |
1294 | 1420 if (!db_.LookupResource(resource, type, publicId)) |
714
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1421 { |
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1422 throw OrthancException(ErrorCode_UnknownResource); |
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1423 } |
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1424 |
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1425 if (type == ResourceType_Instance) |
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1426 { |
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1427 // An instance cannot have a child |
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1428 throw OrthancException(ErrorCode_BadParameterType); |
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1429 } |
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1430 |
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1431 std::list<int64_t> tmp; |
1247 | 1432 db_.GetChildrenInternalId(tmp, resource); |
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1433 |
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1434 for (std::list<int64_t>::const_iterator |
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1435 it = tmp.begin(); it != tmp.end(); ++it) |
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1436 { |
1247 | 1437 result.push_back(db_.GetPublicId(*it)); |
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1438 } |
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1439 } |
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1440 |
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1441 |
304 | 1442 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1443 const std::string& publicId) | |
1444 { | |
1445 result.clear(); | |
1446 | |
1447 boost::mutex::scoped_lock lock(mutex_); | |
1448 | |
1449 ResourceType type; | |
1450 int64_t top; | |
1294 | 1451 if (!db_.LookupResource(top, type, publicId)) |
304 | 1452 { |
1453 throw OrthancException(ErrorCode_UnknownResource); | |
1454 } | |
1455 | |
1456 if (type == ResourceType_Instance) | |
1457 { | |
1458 // The resource is already an instance: Do not go down the hierarchy | |
1459 result.push_back(publicId); | |
1460 return; | |
1461 } | |
1462 | |
1463 std::stack<int64_t> toExplore; | |
1464 toExplore.push(top); | |
1465 | |
1466 std::list<int64_t> tmp; | |
1467 | |
1468 while (!toExplore.empty()) | |
1469 { | |
1470 // Get the internal ID of the current resource | |
1471 int64_t resource = toExplore.top(); | |
1472 toExplore.pop(); | |
1473 | |
1247 | 1474 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1475 { |
1247 | 1476 result.push_back(db_.GetPublicId(resource)); |
304 | 1477 } |
1478 else | |
1479 { | |
1480 // Tag all the children of this resource as to be explored | |
1247 | 1481 db_.GetChildrenInternalId(tmp, resource); |
304 | 1482 for (std::list<int64_t>::const_iterator |
656 | 1483 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1484 { |
1485 toExplore.push(*it); | |
1486 } | |
1487 } | |
1488 } | |
1489 } | |
1490 | |
306
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1491 |
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1492 void ServerIndex::SetMetadata(const std::string& publicId, |
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1493 MetadataType type, |
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1494 const std::string& value) |
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1495 { |
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1496 boost::mutex::scoped_lock lock(mutex_); |
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1497 Transaction t(*this); |
306
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1498 |
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1499 ResourceType rtype; |
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1500 int64_t id; |
1294 | 1501 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1502 { |
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1503 throw OrthancException(ErrorCode_UnknownResource); |
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1504 } |
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1505 |
1247 | 1506 db_.SetMetadata(id, type, value); |
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1507 |
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1508 if (IsUserMetadata(type)) |
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1509 { |
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1510 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1511 } |
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1512 |
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1513 t.Commit(0); |
306
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1514 } |
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1515 |
438 | 1516 |
1517 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1518 MetadataType type) | |
1519 { | |
1520 boost::mutex::scoped_lock lock(mutex_); | |
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|
1521 Transaction t(*this); |
438 | 1522 |
1523 ResourceType rtype; | |
1524 int64_t id; | |
1294 | 1525 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1526 { |
1527 throw OrthancException(ErrorCode_UnknownResource); | |
1528 } | |
1529 | |
1247 | 1530 db_.DeleteMetadata(id, type); |
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1531 |
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1532 if (IsUserMetadata(type)) |
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1533 { |
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1534 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1535 } |
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1536 |
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1537 t.Commit(0); |
438 | 1538 } |
1539 | |
1540 | |
306
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1541 bool ServerIndex::LookupMetadata(std::string& target, |
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1542 const std::string& publicId, |
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1543 ResourceType expectedType, |
306
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1544 MetadataType type) |
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1545 { |
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1546 boost::mutex::scoped_lock lock(mutex_); |
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1547 |
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1548 ResourceType rtype; |
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1549 int64_t id; |
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1550 if (!db_.LookupResource(id, rtype, publicId) || |
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1551 rtype != expectedType) |
306
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1552 { |
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1553 throw OrthancException(ErrorCode_UnknownResource); |
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1554 } |
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1555 |
1247 | 1556 return db_.LookupMetadata(target, id, type); |
306
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1557 } |
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1558 |
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1559 |
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|
1560 void ServerIndex::ListAvailableAttachments(std::set<FileContentType>& target, |
697
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|
1561 const std::string& publicId, |
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|
1562 ResourceType expectedType) |
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|
1563 { |
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|
1564 boost::mutex::scoped_lock lock(mutex_); |
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|
1565 |
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changeset
|
1566 ResourceType type; |
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changeset
|
1567 int64_t id; |
1294 | 1568 if (!db_.LookupResource(id, type, publicId) || |
697
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changeset
|
1569 expectedType != type) |
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changeset
|
1570 { |
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changeset
|
1571 throw OrthancException(ErrorCode_UnknownResource); |
dd1ce9a2844c
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diff
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|
1572 } |
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689
diff
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|
1573 |
1247 | 1574 db_.ListAvailableAttachments(target, id); |
697
dd1ce9a2844c
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689
diff
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|
1575 } |
dd1ce9a2844c
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689
diff
changeset
|
1576 |
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diff
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|
1577 |
306
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diff
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|
1578 bool ServerIndex::LookupParent(std::string& target, |
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diff
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|
1579 const std::string& publicId) |
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diff
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|
1580 { |
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diff
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|
1581 boost::mutex::scoped_lock lock(mutex_); |
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|
1582 |
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|
1583 ResourceType type; |
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diff
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|
1584 int64_t id; |
1294 | 1585 if (!db_.LookupResource(id, type, publicId)) |
306
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|
1586 { |
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|
1587 throw OrthancException(ErrorCode_UnknownResource); |
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|
1588 } |
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|
1589 |
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|
1590 int64_t parentId; |
1247 | 1591 if (db_.LookupParent(parentId, id)) |
306
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|
1592 { |
1247 | 1593 target = db_.GetPublicId(parentId); |
306
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|
1594 return true; |
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|
1595 } |
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|
1596 else |
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diff
changeset
|
1597 { |
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|
1598 return false; |
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|
1599 } |
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|
1600 } |
310 | 1601 |
1602 | |
1603 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1604 { | |
1605 boost::mutex::scoped_lock lock(mutex_); | |
1310
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diff
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|
1606 Transaction transaction(*this); |
311 | 1607 |
1237 | 1608 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1609 transaction.Commit(0); |
311 | 1610 |
1611 return seq; | |
310 | 1612 } |
315 | 1613 |
1614 | |
1615 | |
1616 void ServerIndex::LogChange(ChangeType changeType, | |
1617 const std::string& publicId) | |
1618 { | |
1619 boost::mutex::scoped_lock lock(mutex_); | |
1310
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1620 Transaction transaction(*this); |
315 | 1621 |
1622 int64_t id; | |
1623 ResourceType type; | |
1294 | 1624 if (!db_.LookupResource(id, type, publicId)) |
315 | 1625 { |
1626 throw OrthancException(ErrorCode_UnknownResource); | |
1627 } | |
1628 | |
1237 | 1629 LogChange(id, changeType, type, publicId); |
1310
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|
1630 transaction.Commit(0); |
315 | 1631 } |
413
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clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1632 |
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diff
changeset
|
1633 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1634 void ServerIndex::DeleteChanges() |
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diff
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|
1635 { |
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diff
changeset
|
1636 boost::mutex::scoped_lock lock(mutex_); |
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Fix missing DB transactions in some write operations
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diff
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|
1637 |
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Fix missing DB transactions in some write operations
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diff
changeset
|
1638 Transaction transaction(*this); |
1286 | 1639 db_.ClearChanges(); |
3315
8bf33fa68435
Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1640 transaction.Commit(0); |
413
47d63c941902
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1641 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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399
diff
changeset
|
1642 |
47d63c941902
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399
diff
changeset
|
1643 void ServerIndex::DeleteExportedResources() |
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diff
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|
1644 { |
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parents:
399
diff
changeset
|
1645 boost::mutex::scoped_lock lock(mutex_); |
3315
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Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1646 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1647 Transaction transaction(*this); |
1286 | 1648 db_.ClearExportedResources(); |
3315
8bf33fa68435
Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3187
diff
changeset
|
1649 transaction.Commit(0); |
413
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diff
changeset
|
1650 } |
440
23e5b35e3c5c
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diff
changeset
|
1651 |
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diff
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|
1652 |
3174
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primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1653 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1654 /* out */ uint64_t& diskSize, |
646 | 1655 /* out */ uint64_t& uncompressedSize, |
1656 /* out */ unsigned int& countStudies, | |
1657 /* out */ unsigned int& countSeries, | |
1658 /* out */ unsigned int& countInstances, | |
2987
96089d1aba4d
New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1659 /* out */ uint64_t& dicomDiskSize, |
96089d1aba4d
New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2940
diff
changeset
|
1660 /* out */ uint64_t& dicomUncompressedSize, |
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1661 const std::string& publicId) |
440
23e5b35e3c5c
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diff
changeset
|
1662 { |
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1663 boost::mutex::scoped_lock lock(mutex_); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1664 |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3105
diff
changeset
|
1665 int64_t top; |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1666 if (!db_.LookupResource(top, type, publicId)) |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1667 { |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1668 throw OrthancException(ErrorCode_UnknownResource); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1669 } |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1670 |
646 | 1671 std::stack<int64_t> toExplore; |
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3105
diff
changeset
|
1672 toExplore.push(top); |
440
23e5b35e3c5c
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diff
changeset
|
1673 |
646 | 1674 countInstances = 0; |
1675 countSeries = 0; | |
1676 countStudies = 0; | |
2987
96089d1aba4d
New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1677 diskSize = 0; |
646 | 1678 uncompressedSize = 0; |
2987
96089d1aba4d
New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2940
diff
changeset
|
1679 dicomDiskSize = 0; |
96089d1aba4d
New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1680 dicomUncompressedSize = 0; |
440
23e5b35e3c5c
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diff
changeset
|
1681 |
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diff
changeset
|
1682 while (!toExplore.empty()) |
23e5b35e3c5c
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diff
changeset
|
1683 { |
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diff
changeset
|
1684 // Get the internal ID of the current resource |
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diff
changeset
|
1685 int64_t resource = toExplore.top(); |
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diff
changeset
|
1686 toExplore.pop(); |
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diff
changeset
|
1687 |
1247 | 1688 ResourceType thisType = db_.GetResourceType(resource); |
440
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diff
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|
1689 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1690 std::set<FileContentType> f; |
1247 | 1691 db_.ListAvailableAttachments(f, resource); |
702
7592a48e97e4
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diff
changeset
|
1692 |
4514
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diff
changeset
|
1693 for (std::set<FileContentType>::const_iterator |
702
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diff
changeset
|
1694 it = f.begin(); it != f.end(); ++it) |
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diff
changeset
|
1695 { |
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diff
changeset
|
1696 FileInfo attachment; |
1247 | 1697 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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delete custom attachment
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diff
changeset
|
1698 { |
2987
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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diff
changeset
|
1699 if (attachment.GetContentType() == FileContentType_Dicom) |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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changeset
|
1700 { |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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diff
changeset
|
1701 dicomDiskSize += attachment.GetCompressedSize(); |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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diff
changeset
|
1702 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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changeset
|
1703 } |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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|
1704 |
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diff
changeset
|
1705 diskSize += attachment.GetCompressedSize(); |
702
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diff
changeset
|
1706 uncompressedSize += attachment.GetUncompressedSize(); |
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diff
changeset
|
1707 } |
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diff
changeset
|
1708 } |
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changeset
|
1709 |
440
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diff
changeset
|
1710 if (thisType == ResourceType_Instance) |
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changeset
|
1711 { |
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diff
changeset
|
1712 countInstances++; |
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|
1713 } |
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diff
changeset
|
1714 else |
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diff
changeset
|
1715 { |
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diff
changeset
|
1716 switch (thisType) |
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diff
changeset
|
1717 { |
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diff
changeset
|
1718 case ResourceType_Study: |
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|
1719 countStudies++; |
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diff
changeset
|
1720 break; |
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diff
changeset
|
1721 |
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|
1722 case ResourceType_Series: |
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diff
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|
1723 countSeries++; |
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diff
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1724 break; |
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diff
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1725 |
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diff
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|
1726 default: |
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diff
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1727 break; |
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|
1728 } |
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|
1729 |
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1730 // Tag all the children of this resource as to be explored |
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diff
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|
1731 std::list<int64_t> tmp; |
1247 | 1732 db_.GetChildrenInternalId(tmp, resource); |
440
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1733 for (std::list<int64_t>::const_iterator |
656 | 1734 it = tmp.begin(); it != tmp.end(); ++it) |
440
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|
1735 { |
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|
1736 toExplore.push(*it); |
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1737 } |
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1738 } |
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1739 } |
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|
1740 |
646 | 1741 if (countStudies == 0) |
1742 { | |
1743 countStudies = 1; | |
1744 } | |
1745 | |
1746 if (countSeries == 0) | |
1747 { | |
1748 countSeries = 1; | |
1749 } | |
1750 } | |
1751 | |
1752 | |
2665
389d050a2e66
fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1753 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
389d050a2e66
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|
1754 unsigned int threadSleep) |
511
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1755 { |
2940
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|
1756 int stableAge; |
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|
1757 |
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changeset
|
1758 { |
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changeset
|
1759 OrthancConfiguration::ReaderLock lock; |
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1760 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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1761 } |
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1762 |
511
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1763 if (stableAge <= 0) |
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1764 { |
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1765 stableAge = 60; |
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1766 } |
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1767 |
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1768 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1769 |
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1770 while (!that->done_) |
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1771 { |
2665
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|
1772 // Check for stable resources each few seconds |
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|
1773 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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1774 |
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|
1775 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1776 |
511
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1777 while (!that->unstableResources_.IsEmpty() && |
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1778 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1779 { |
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1780 // This DICOM resource has not received any new instance for |
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1781 // some time. It can be considered as stable. |
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1782 |
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1783 UnstableResourcePayload payload; |
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1784 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1785 |
513 | 1786 // Ensure that the resource is still existing before logging the change |
1247 | 1787 if (that->db_.IsExistingResource(id)) |
511
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1788 { |
1177
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1789 switch (payload.GetResourceType()) |
513 | 1790 { |
1177
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1791 case ResourceType_Patient: |
1237 | 1792 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1793 break; |
511
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1794 |
1177
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1795 case ResourceType_Study: |
1237 | 1796 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1797 break; |
511
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1798 |
1177
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|
1799 case ResourceType_Series: |
1237 | 1800 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1801 break; |
1802 | |
1803 default: | |
1804 throw OrthancException(ErrorCode_InternalError); | |
1805 } | |
1806 | |
1807 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1808 } |
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1809 } |
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1810 } |
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1811 |
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1812 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1813 } |
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1814 |
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1815 |
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1816 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1817 Orthanc::ResourceType type, |
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1818 const std::string& publicId) |
511
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1819 { |
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1820 // WARNING: Before calling this method, "mutex_" must be locked. |
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1821 |
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1822 assert(type == Orthanc::ResourceType_Patient || |
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1823 type == Orthanc::ResourceType_Study || |
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1824 type == Orthanc::ResourceType_Series); |
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1825 |
1177
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1826 UnstableResourcePayload payload(type, publicId); |
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1827 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1828 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1829 |
1237 | 1830 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1831 } |
521 | 1832 |
1833 | |
1834 | |
3034
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|
1835 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
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1836 ResourceType level, |
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1837 const DicomTag& tag, |
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1838 const std::string& value) |
615 | 1839 { |
1727 | 1840 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
1841 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
1842 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
1843 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
1844 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 1845 |
615 | 1846 result.clear(); |
1847 | |
3034
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1848 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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1849 |
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|
1850 std::vector<DatabaseConstraint> query; |
3073
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|
1851 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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1852 |
3075
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1853 std::list<std::string> tmp; |
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1854 |
3034
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1855 { |
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changeset
|
1856 boost::mutex::scoped_lock lock(mutex_); |
3075
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changeset
|
1857 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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1858 } |
3075
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1859 |
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changeset
|
1860 CopyListToVector(result, tmp); |
615 | 1861 } |
1862 | |
1863 | |
699
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|
1864 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
1865 const std::string& publicId) |
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|
1866 { |
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|
1867 boost::mutex::scoped_lock lock(mutex_); |
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1868 |
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changeset
|
1869 Transaction t(*this); |
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|
1870 |
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1871 ResourceType resourceType; |
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1872 int64_t resourceId; |
1294 | 1873 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1874 { |
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1875 return StoreStatus_Failure; // Inexistent resource |
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1876 } |
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1877 |
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1878 // Remove possible previous attachment |
1247 | 1879 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1880 |
704
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1881 // Locate the patient of the target resource |
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1882 int64_t patientId = resourceId; |
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1883 for (;;) |
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1884 { |
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1885 int64_t parent; |
1247 | 1886 if (db_.LookupParent(parent, patientId)) |
704
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1887 { |
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1888 // We have not reached the patient level yet |
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1889 patientId = parent; |
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1890 } |
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1891 else |
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1892 { |
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1893 // We have reached the patient level |
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1894 break; |
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1895 } |
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1896 } |
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1897 |
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1898 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 1899 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
1900 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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1901 |
1247 | 1902 db_.AddAttachment(resourceId, attachment); |
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1903 |
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1904 if (IsUserContentType(attachment.GetContentType())) |
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1905 { |
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1906 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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1907 } |
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1908 |
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1909 t.Commit(attachment.GetCompressedSize()); |
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1910 |
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1911 return StoreStatus_Success; |
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1912 } |
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1913 |
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1914 |
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1915 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1916 FileContentType type) |
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1917 { |
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1918 boost::mutex::scoped_lock lock(mutex_); |
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1919 Transaction t(*this); |
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1920 |
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1921 ResourceType rtype; |
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1922 int64_t id; |
1294 | 1923 if (!db_.LookupResource(id, rtype, publicId)) |
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1924 { |
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1925 throw OrthancException(ErrorCode_UnknownResource); |
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1926 } |
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1927 |
1247 | 1928 db_.DeleteAttachment(id, type); |
702
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1929 |
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1930 if (IsUserContentType(type)) |
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1931 { |
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1932 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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1933 } |
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1934 |
702
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1935 t.Commit(0); |
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1936 } |
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1937 |
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1938 |
1249
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1939 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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1940 const std::string& value) |
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1941 { |
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1942 boost::mutex::scoped_lock lock(mutex_); |
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1943 |
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1944 Transaction transaction(*this); |
1249
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1945 db_.SetGlobalProperty(property, value); |
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1946 transaction.Commit(0); |
1249
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1947 } |
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1948 |
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1949 |
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1950 bool ServerIndex::LookupGlobalProperty(std::string& value, |
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1951 GlobalProperty property) |
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1952 { |
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1953 boost::mutex::scoped_lock lock(mutex_); |
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1954 return db_.LookupGlobalProperty(value, property); |
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1955 } |
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1956 |
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1957 |
1218
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1958 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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1959 const std::string& defaultValue) |
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1960 { |
1239 | 1961 std::string value; |
2668
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1962 |
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1963 if (LookupGlobalProperty(value, property)) |
1239 | 1964 { |
1965 return value; | |
1966 } | |
1967 else | |
1968 { | |
1969 return defaultValue; | |
1970 } | |
1218
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1971 } |
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|
1972 |
1352 | 1973 |
1974 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
1975 const std::string& publicId, | |
1677
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1976 ResourceType expectedType, |
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1977 ResourceType levelOfInterest) |
1352 | 1978 { |
1677
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1979 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
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1980 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
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1981 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
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1982 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
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1983 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
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1984 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
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|
1985 { |
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|
1986 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1987 } |
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|
1988 |
1352 | 1989 result.Clear(); |
1990 | |
1991 boost::mutex::scoped_lock lock(mutex_); | |
1992 | |
1993 // Lookup for the requested resource | |
1994 int64_t id; | |
1995 ResourceType type; | |
1996 if (!db_.LookupResource(id, type, publicId) || | |
1997 type != expectedType) | |
1998 { | |
1999 return false; | |
2000 } | |
1677
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|
2001 |
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|
2002 if (type == ResourceType_Study) |
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|
2003 { |
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|
2004 DicomMap tmp; |
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|
2005 db_.GetMainDicomTags(tmp, id); |
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|
2006 |
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|
2007 switch (levelOfInterest) |
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|
2008 { |
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|
2009 case ResourceType_Patient: |
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|
2010 tmp.ExtractPatientInformation(result); |
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|
2011 return true; |
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|
2012 |
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|
2013 case ResourceType_Study: |
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|
2014 tmp.ExtractStudyInformation(result); |
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|
2015 return true; |
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|
2016 |
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diff
changeset
|
2017 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2018 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
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|
2019 } |
a903d57d9f0c
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|
2020 } |
1352 | 2021 else |
2022 { | |
2023 db_.GetMainDicomTags(result, id); | |
2024 return true; | |
2025 } | |
2026 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2027 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2028 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2029 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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|
2030 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2031 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2032 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2033 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2034 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2035 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2036 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2037 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2038 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2039 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2040 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2041 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2042 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2043 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2044 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2045 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2046 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2047 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2048 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2049 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2050 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2051 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2052 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2053 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2054 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2055 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2056 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2057 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2058 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2059 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2060 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2061 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2062 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2063 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2064 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2065 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2066 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2067 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2068 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2069 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2070 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2071 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2072 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2073 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2074 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2075 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2076 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2077 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2078 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2079 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2080 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2081 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2082 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2083 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2084 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2085 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2086 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2087 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2088 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2089 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2090 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2091 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2092 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2093 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2094 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2095 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2096 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2097 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2098 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2099 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2100 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2101 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2102 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2103 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2104 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2105 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2106 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2107 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2108 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2109 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2110 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2111 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
changeset
|
2112 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2113 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
changeset
|
2114 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2115 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2116 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2117 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2118 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2119 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2120 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2121 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2122 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2123 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2124 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2125 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2126 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2127 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2128 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2129 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2130 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2131 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2132 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2133 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2134 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2135 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2136 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2137 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2138 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2139 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2140 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2141 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2142 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2143 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2144 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2145 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2146 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2147 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2148 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2149 |
4205 | 2150 void ServerIndex::ReconstructInstance(const ParsedDicomFile& dicom) |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2151 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2152 DicomMap summary; |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
2153 OrthancConfiguration::DefaultExtractDicomSummary(summary, dicom); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2154 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2155 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2156 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2157 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2158 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2159 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2160 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2161 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2162 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2163 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2164 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2165 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2166 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2167 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2168 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2169 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2170 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2171 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2172 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2173 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2174 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2175 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2176 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2177 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2178 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2179 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2180 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2181 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2182 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2183 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2184 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2185 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2186 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2187 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2188 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2189 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2190 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2191 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2192 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
2193 DicomTransferSyntax s; |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2194 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2195 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
2196 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, GetTransferSyntaxUid(s)); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2197 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2198 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2199 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2200 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2201 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2202 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2203 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2204 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2205 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2206 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2207 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2208 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2209 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2210 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2211 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2212 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2213 } |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2214 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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3020
diff
changeset
|
2215 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
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|
2216 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2217 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2218 const DatabaseLookup& source, |
2219 ResourceType queryLevel) const | |
2220 { | |
2221 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2222 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
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|
2223 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2224 target.reserve(source.GetConstraintsCount()); |
3031 | 2225 |
3027 | 2226 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2227 { | |
3031 | 2228 ResourceType level; |
2229 DicomTagType type; | |
3027 | 2230 |
3031 | 2231 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2232 | |
2233 if (type == DicomTagType_Identifier || | |
2234 type == DicomTagType_Main) | |
3027 | 2235 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2236 // Use the fact that patient-level tags are copied at the study level |
3031 | 2237 if (level == ResourceType_Patient && |
2238 queryLevel != ResourceType_Patient) | |
3027 | 2239 { |
3031 | 2240 level = ResourceType_Study; |
3027 | 2241 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2242 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2243 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2244 } |
2245 } | |
2246 } | |
2247 | |
2248 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2249 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3034
diff
changeset
|
2250 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2251 const DatabaseLookup& lookup, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2252 ResourceType queryLevel, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
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|
2253 size_t limit) |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2254 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2255 std::vector<DatabaseConstraint> normalized; |
3027 | 2256 NormalizeLookup(normalized, lookup, queryLevel); |
2257 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2258 std::list<std::string> resourcesList, instancesList; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2259 |
3027 | 2260 { |
2261 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
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|
2262 |
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|
2263 if (instancesId == NULL) |
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|
2264 { |
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|
2265 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
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2266 } |
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|
2267 else |
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|
2268 { |
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|
2269 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
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2270 } |
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|
2271 } |
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2272 |
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|
2273 CopyListToVector(resourcesId, resourcesList); |
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2274 |
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|
2275 if (instancesId != NULL) |
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2276 { |
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|
2277 CopyListToVector(*instancesId, instancesList); |
3027 | 2278 } |
3025
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2279 } |
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2280 |
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2281 |
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2282 |
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2283 |
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2284 |
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2285 /*** |
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2286 ** PROTOTYPING FOR DB REFACTORING BELOW |
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2287 ***/ |
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2288 |
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2289 namespace |
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2290 { |
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2291 /** |
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2292 * Some handy templates to reduce the verbosity in the definitions |
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2293 * of the internal classes. |
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2294 **/ |
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2295 |
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2296 template <typename Operations, |
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2297 typename Tuple> |
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2298 class TupleOperationsWrapper : public ServerIndex::IReadOnlyOperations |
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2299 { |
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2300 protected: |
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2301 Operations& operations_; |
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2302 const Tuple& tuple_; |
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2303 |
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2304 public: |
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2305 TupleOperationsWrapper(Operations& operations, |
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2306 const Tuple& tuple) : |
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2307 operations_(operations), |
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2308 tuple_(tuple) |
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2309 { |
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2310 } |
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2311 |
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2312 virtual void Apply(ServerIndex::ReadOnlyTransaction& transaction) ORTHANC_OVERRIDE |
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2313 { |
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2314 operations_.ApplyTuple(transaction, tuple_); |
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2315 } |
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2316 }; |
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2317 |
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2318 |
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2319 template <typename T1> |
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2320 class ReadOnlyOperationsT1 : public boost::noncopyable |
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2321 { |
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2322 public: |
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2323 typedef typename boost::tuple<T1> Tuple; |
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2324 |
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2325 virtual ~ReadOnlyOperationsT1() |
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2326 { |
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2327 } |
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2328 |
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2329 virtual void ApplyTuple(ServerIndex::ReadOnlyTransaction& transaction, |
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2330 const Tuple& tuple) = 0; |
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2331 |
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|
2332 void Apply(ServerIndex& index, |
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2333 T1 t1) |
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2334 { |
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|
2335 const Tuple tuple(t1); |
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2336 TupleOperationsWrapper<ReadOnlyOperationsT1, Tuple> wrapper(*this, tuple); |
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2337 index.Apply(wrapper); |
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2338 } |
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2339 }; |
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2340 |
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2341 |
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2342 template <typename T1, |
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2343 typename T2> |
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2344 class ReadOnlyOperationsT2 : public boost::noncopyable |
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2345 { |
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2346 public: |
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2347 typedef typename boost::tuple<T1, T2> Tuple; |
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2348 |
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|
2349 virtual ~ReadOnlyOperationsT2() |
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2350 { |
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2351 } |
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2352 |
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2353 virtual void ApplyTuple(ServerIndex::ReadOnlyTransaction& transaction, |
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|
2354 const Tuple& tuple) = 0; |
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2355 |
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2356 void Apply(ServerIndex& index, |
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2357 T1 t1, |
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2358 T2 t2) |
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2359 { |
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2360 const Tuple tuple(t1, t2); |
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2361 TupleOperationsWrapper<ReadOnlyOperationsT2, Tuple> wrapper(*this, tuple); |
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2362 index.Apply(wrapper); |
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2363 } |
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2364 }; |
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2365 |
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2366 |
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2367 template <typename T1, |
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2368 typename T2, |
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2369 typename T3> |
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2370 class ReadOnlyOperationsT3 : public boost::noncopyable |
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2371 { |
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2372 public: |
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2373 typedef typename boost::tuple<T1, T2, T3> Tuple; |
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2374 |
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|
2375 virtual ~ReadOnlyOperationsT3() |
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2376 { |
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2377 } |
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|
2378 |
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2379 virtual void ApplyTuple(ServerIndex::ReadOnlyTransaction& transaction, |
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2380 const Tuple& tuple) = 0; |
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2381 |
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2382 void Apply(ServerIndex& index, |
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2383 T1 t1, |
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2384 T2 t2, |
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2385 T3 t3) |
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2386 { |
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2387 const Tuple tuple(t1, t2, t3); |
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2388 TupleOperationsWrapper<ReadOnlyOperationsT3, Tuple> wrapper(*this, tuple); |
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2389 index.Apply(wrapper); |
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2390 } |
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2391 }; |
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2392 |
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2393 |
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2394 template <typename T1, |
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2395 typename T2, |
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2396 typename T3, |
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2397 typename T4> |
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2398 class ReadOnlyOperationsT4 : public boost::noncopyable |
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2399 { |
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2400 public: |
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2401 typedef typename boost::tuple<T1, T2, T3, T4> Tuple; |
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2402 |
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2403 virtual ~ReadOnlyOperationsT4() |
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2404 { |
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2405 } |
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2406 |
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2407 virtual void ApplyTuple(ServerIndex::ReadOnlyTransaction& transaction, |
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|
2408 const Tuple& tuple) = 0; |
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2409 |
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|
2410 void Apply(ServerIndex& index, |
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2411 T1 t1, |
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2412 T2 t2, |
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2413 T3 t3, |
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|
2414 T4 t4) |
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2415 { |
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|
2416 const Tuple tuple(t1, t2, t3, t4); |
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2417 TupleOperationsWrapper<ReadOnlyOperationsT4, Tuple> wrapper(*this, tuple); |
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|
2418 index.Apply(wrapper); |
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2419 } |
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2420 }; |
4558 | 2421 |
2422 | |
2423 template <typename T1, | |
2424 typename T2, | |
2425 typename T3, | |
2426 typename T4, | |
2427 typename T5> | |
2428 class ReadOnlyOperationsT5 : public boost::noncopyable | |
2429 { | |
2430 public: | |
2431 typedef typename boost::tuple<T1, T2, T3, T4, T5> Tuple; | |
2432 | |
2433 virtual ~ReadOnlyOperationsT5() | |
2434 { | |
2435 } | |
2436 | |
2437 virtual void ApplyTuple(ServerIndex::ReadOnlyTransaction& transaction, | |
2438 const Tuple& tuple) = 0; | |
2439 | |
2440 void Apply(ServerIndex& index, | |
2441 T1 t1, | |
2442 T2 t2, | |
2443 T3 t3, | |
2444 T4 t4, | |
2445 T5 t5) | |
2446 { | |
2447 const Tuple tuple(t1, t2, t3, t4, t5); | |
2448 TupleOperationsWrapper<ReadOnlyOperationsT5, Tuple> wrapper(*this, tuple); | |
2449 index.Apply(wrapper); | |
2450 } | |
2451 }; | |
2452 | |
2453 | |
2454 template <typename T1, | |
2455 typename T2, | |
2456 typename T3, | |
2457 typename T4, | |
2458 typename T5, | |
2459 typename T6> | |
2460 class ReadOnlyOperationsT6 : public boost::noncopyable | |
2461 { | |
2462 public: | |
2463 typedef typename boost::tuple<T1, T2, T3, T4, T5, T6> Tuple; | |
2464 | |
2465 virtual ~ReadOnlyOperationsT6() | |
2466 { | |
2467 } | |
2468 | |
2469 virtual void ApplyTuple(ServerIndex::ReadOnlyTransaction& transaction, | |
2470 const Tuple& tuple) = 0; | |
2471 | |
2472 void Apply(ServerIndex& index, | |
2473 T1 t1, | |
2474 T2 t2, | |
2475 T3 t3, | |
2476 T4 t4, | |
2477 T5 t5, | |
2478 T6 t6) | |
2479 { | |
2480 const Tuple tuple(t1, t2, t3, t4, t5, t6); | |
2481 TupleOperationsWrapper<ReadOnlyOperationsT6, Tuple> wrapper(*this, tuple); | |
2482 index.Apply(wrapper); | |
2483 } | |
2484 }; | |
4557
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2485 } |
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2486 |
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|
2487 |
4551
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|
2488 class ServerIndex::ReadOnlyWrapper : public IReadOnlyOperations |
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|
2489 { |
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|
2490 private: |
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|
2491 ReadOnlyFunction func_; |
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2492 |
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|
2493 public: |
4555 | 2494 explicit ReadOnlyWrapper(ReadOnlyFunction func) : |
4551
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|
2495 func_(func) |
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|
2496 { |
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|
2497 assert(func_ != NULL); |
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2498 } |
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2499 |
4555 | 2500 virtual void Apply(ReadOnlyTransaction& transaction) ORTHANC_OVERRIDE |
4551
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|
2501 { |
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|
2502 func_(transaction); |
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|
2503 } |
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|
2504 }; |
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|
2505 |
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|
2506 |
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|
2507 class ServerIndex::ReadWriteWrapper : public IReadWriteOperations |
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2508 { |
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|
2509 private: |
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|
2510 ReadWriteFunction func_; |
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2511 |
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|
2512 public: |
4555 | 2513 explicit ReadWriteWrapper(ReadWriteFunction func) : |
4551
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|
2514 func_(func) |
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|
2515 { |
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|
2516 assert(func_ != NULL); |
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|
2517 } |
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2518 |
4555 | 2519 virtual void Apply(ReadWriteTransaction& transaction) ORTHANC_OVERRIDE |
4551
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2520 { |
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2521 func_(transaction); |
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2522 } |
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|
2523 }; |
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2524 |
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|
2525 |
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|
2526 void ServerIndex::ApplyInternal(IReadOnlyOperations* readOperations, |
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|
2527 IReadWriteOperations* writeOperations) |
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2528 { |
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|
2529 if ((readOperations == NULL && writeOperations == NULL) || |
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2530 (readOperations != NULL && writeOperations != NULL)) |
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2531 { |
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|
2532 throw OrthancException(ErrorCode_InternalError); |
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2533 } |
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2534 |
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|
2535 unsigned int count = 0; |
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2536 |
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|
2537 for (;;) |
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2538 { |
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|
2539 try |
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|
2540 { |
4554 | 2541 boost::mutex::scoped_lock lock(mutex_); // TODO - REMOVE |
2542 | |
4558 | 2543 Transaction transaction(*this); // TODO - Only if "TransactionType_SingleStatement" |
2544 | |
4551
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2545 if (readOperations != NULL) |
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2546 { |
4554 | 2547 ReadOnlyTransaction transaction(db_); |
4551
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2548 readOperations->Apply(transaction); |
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2549 } |
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|
2550 else |
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|
2551 { |
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|
2552 assert(writeOperations != NULL); |
4554 | 2553 ReadWriteTransaction transaction(db_); |
4551
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2554 writeOperations->Apply(transaction); |
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2555 } |
4558 | 2556 |
2557 transaction.Commit(0); | |
4551
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2558 |
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|
2559 return; // Success |
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|
2560 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2561 catch (OrthancException& e) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2562 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2563 if (e.GetErrorCode() == ErrorCode_DatabaseCannotSerialize) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2564 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2565 if (count == maxRetries_) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2566 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2567 throw; |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2568 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2569 else |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2570 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2571 count++; |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2572 boost::this_thread::sleep(boost::posix_time::milliseconds(100 * count)); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2573 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2574 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2575 else if (e.GetErrorCode() == ErrorCode_DatabaseUnavailable) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2576 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2577 if (count == maxRetries_) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2578 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2579 throw; |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2580 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2581 else |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2582 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2583 count++; |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2584 boost::this_thread::sleep(boost::posix_time::milliseconds(1000)); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2585 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2586 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2587 else |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2588 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2589 throw; |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2590 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2591 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2592 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2593 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2594 |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2595 void ServerIndex::Apply(IReadOnlyOperations& operations) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2596 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2597 ApplyInternal(&operations, NULL); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2598 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2599 |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2600 void ServerIndex::Apply(IReadWriteOperations& operations) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2601 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2602 ApplyInternal(NULL, &operations); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2603 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2604 |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2605 void ServerIndex::Apply(ReadOnlyFunction func) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2606 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2607 ReadOnlyWrapper wrapper(func); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2608 Apply(wrapper); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2609 } |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2610 |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2611 void ServerIndex::Apply(ReadWriteFunction func) |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2612 { |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2613 ReadWriteWrapper wrapper(func); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2614 Apply(wrapper); |
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
diff
changeset
|
2615 } |
4554 | 2616 |
2617 | |
2618 bool ServerIndex::ExpandResource(Json::Value& target, | |
2619 const std::string& publicId, | |
2620 ResourceType level) | |
2621 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2622 class Operations : public ReadOnlyOperationsT3<Json::Value*, std::string, ResourceType> |
4554 | 2623 { |
2624 private: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2625 ServerIndex& index_; |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2626 bool found_; |
4554 | 2627 |
2628 public: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2629 Operations(ServerIndex& index) : |
4554 | 2630 index_(index), |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2631 found_(false) |
4554 | 2632 { |
2633 } | |
2634 | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2635 bool HasFound() const |
4554 | 2636 { |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2637 return found_; |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2638 } |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2639 |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2640 virtual void ApplyTuple(ReadOnlyTransaction& transaction, |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2641 const Tuple& tuple) ORTHANC_OVERRIDE |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2642 { |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2643 Json::Value& target = *tuple.get<0>(); |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2644 |
4554 | 2645 // Lookup for the requested resource |
2646 int64_t internalId; // unused | |
2647 ResourceType type; | |
2648 std::string parent; | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2649 if (!transaction.LookupResourceAndParent(internalId, type, parent, tuple.get<1>()) || |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2650 type != tuple.get<2>()) |
4554 | 2651 { |
2652 found_ = false; | |
2653 } | |
2654 else | |
2655 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2656 target = Json::objectValue; |
4554 | 2657 |
2658 // Set information about the parent resource (if it exists) | |
2659 if (type == ResourceType_Patient) | |
2660 { | |
2661 if (!parent.empty()) | |
2662 { | |
2663 throw OrthancException(ErrorCode_DatabasePlugin); | |
2664 } | |
2665 } | |
2666 else | |
2667 { | |
2668 if (parent.empty()) | |
2669 { | |
2670 throw OrthancException(ErrorCode_DatabasePlugin); | |
2671 } | |
2672 | |
2673 switch (type) | |
2674 { | |
2675 case ResourceType_Study: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2676 target["ParentPatient"] = parent; |
4554 | 2677 break; |
2678 | |
2679 case ResourceType_Series: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2680 target["ParentStudy"] = parent; |
4554 | 2681 break; |
2682 | |
2683 case ResourceType_Instance: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2684 target["ParentSeries"] = parent; |
4554 | 2685 break; |
2686 | |
2687 default: | |
2688 throw OrthancException(ErrorCode_InternalError); | |
2689 } | |
2690 } | |
2691 | |
2692 // List the children resources | |
2693 std::list<std::string> children; | |
2694 transaction.GetChildrenPublicId(children, internalId); | |
2695 | |
2696 if (type != ResourceType_Instance) | |
2697 { | |
2698 Json::Value c = Json::arrayValue; | |
2699 | |
2700 for (std::list<std::string>::const_iterator | |
2701 it = children.begin(); it != children.end(); ++it) | |
2702 { | |
2703 c.append(*it); | |
2704 } | |
2705 | |
2706 switch (type) | |
2707 { | |
2708 case ResourceType_Patient: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2709 target["Studies"] = c; |
4554 | 2710 break; |
2711 | |
2712 case ResourceType_Study: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2713 target["Series"] = c; |
4554 | 2714 break; |
2715 | |
2716 case ResourceType_Series: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2717 target["Instances"] = c; |
4554 | 2718 break; |
2719 | |
2720 default: | |
2721 throw OrthancException(ErrorCode_InternalError); | |
2722 } | |
2723 } | |
2724 | |
2725 // Extract the metadata | |
2726 std::map<MetadataType, std::string> metadata; | |
2727 transaction.GetAllMetadata(metadata, internalId); | |
2728 | |
2729 // Set the resource type | |
2730 switch (type) | |
2731 { | |
2732 case ResourceType_Patient: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2733 target["Type"] = "Patient"; |
4554 | 2734 break; |
2735 | |
2736 case ResourceType_Study: | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2737 target["Type"] = "Study"; |
4554 | 2738 break; |
2739 | |
2740 case ResourceType_Series: | |
2741 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2742 target["Type"] = "Series"; |
4554 | 2743 |
2744 int64_t i; | |
2745 if (LookupIntegerMetadata(i, metadata, MetadataType_Series_ExpectedNumberOfInstances)) | |
2746 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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4556
diff
changeset
|
2747 target["ExpectedNumberOfInstances"] = static_cast<int>(i); |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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parents:
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diff
changeset
|
2748 target["Status"] = EnumerationToString(transaction.GetSeriesStatus(internalId, i)); |
4554 | 2749 } |
2750 else | |
2751 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
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4556
diff
changeset
|
2752 target["ExpectedNumberOfInstances"] = Json::nullValue; |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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diff
changeset
|
2753 target["Status"] = EnumerationToString(SeriesStatus_Unknown); |
4554 | 2754 } |
2755 | |
2756 break; | |
2757 } | |
2758 | |
2759 case ResourceType_Instance: | |
2760 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2761 target["Type"] = "Instance"; |
4554 | 2762 |
2763 FileInfo attachment; | |
2764 if (!transaction.LookupAttachment(attachment, internalId, FileContentType_Dicom)) | |
2765 { | |
2766 throw OrthancException(ErrorCode_InternalError); | |
2767 } | |
2768 | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
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4556
diff
changeset
|
2769 target["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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diff
changeset
|
2770 target["FileUuid"] = attachment.GetUuid(); |
4554 | 2771 |
2772 int64_t i; | |
2773 if (LookupIntegerMetadata(i, metadata, MetadataType_Instance_IndexInSeries)) | |
2774 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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4556
diff
changeset
|
2775 target["IndexInSeries"] = static_cast<int>(i); |
4554 | 2776 } |
2777 else | |
2778 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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parents:
4556
diff
changeset
|
2779 target["IndexInSeries"] = Json::nullValue; |
4554 | 2780 } |
2781 | |
2782 break; | |
2783 } | |
2784 | |
2785 default: | |
2786 throw OrthancException(ErrorCode_InternalError); | |
2787 } | |
2788 | |
2789 // Record the remaining information | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
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4556
diff
changeset
|
2790 target["ID"] = tuple.get<1>(); |
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
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parents:
4556
diff
changeset
|
2791 transaction.MainDicomTagsToJson(target, internalId, type); |
4554 | 2792 |
2793 std::string tmp; | |
2794 | |
2795 if (LookupStringMetadata(tmp, metadata, MetadataType_AnonymizedFrom)) | |
2796 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4556
diff
changeset
|
2797 target["AnonymizedFrom"] = tmp; |
4554 | 2798 } |
2799 | |
2800 if (LookupStringMetadata(tmp, metadata, MetadataType_ModifiedFrom)) | |
2801 { | |
4557
b6d4b735eb4d
templates to reduce verbosity in ServerIndex implementation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2802 target["ModifiedFrom"] = tmp; |
4554 | 2803 } |
2804 | |
2805 if (type == ResourceType_Patient || | |
2806 type == ResourceType_Study || | |
2807 type == ResourceType_Series) | |
2808 { | |
4557
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2809 target["IsStable"] = !index_.IsUnstableResource(internalId); |
4554 | 2810 |
2811 if (LookupStringMetadata(tmp, metadata, MetadataType_LastUpdate)) | |
2812 { | |
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templates to reduce verbosity in ServerIndex implementation
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2813 target["LastUpdate"] = tmp; |
4554 | 2814 } |
2815 } | |
2816 | |
2817 found_ = true; | |
2818 } | |
2819 } | |
2820 }; | |
2821 | |
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2822 Operations operations(*this); |
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2823 operations.Apply(*this, &target, publicId, level); |
4554 | 2824 return operations.HasFound(); |
2825 } | |
2826 | |
2827 | |
2828 void ServerIndex::GetAllMetadata(std::map<MetadataType, std::string>& target, | |
2829 const std::string& publicId, | |
2830 ResourceType level) | |
2831 { | |
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2832 class Operations : public ReadOnlyOperationsT3<std::map<MetadataType, std::string>*, std::string, ResourceType> |
4554 | 2833 { |
2834 public: | |
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templates to reduce verbosity in ServerIndex implementation
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2835 virtual void ApplyTuple(ReadOnlyTransaction& transaction, |
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2836 const Tuple& tuple) ORTHANC_OVERRIDE |
4554 | 2837 { |
2838 ResourceType type; | |
2839 int64_t id; | |
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2840 if (!transaction.LookupResource(id, type, tuple.get<1>()) || |
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2841 tuple.get<2>() != type) |
4554 | 2842 { |
2843 throw OrthancException(ErrorCode_UnknownResource); | |
2844 } | |
2845 else | |
2846 { | |
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2847 transaction.GetAllMetadata(*tuple.get<0>(), id); |
4554 | 2848 } |
2849 } | |
2850 }; | |
2851 | |
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2852 Operations operations; |
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templates to reduce verbosity in ServerIndex implementation
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2853 operations.Apply(*this, &target, publicId, level); |
4554 | 2854 } |
4555 | 2855 |
2856 | |
2857 bool ServerIndex::LookupAttachment(FileInfo& attachment, | |
2858 const std::string& instancePublicId, | |
2859 FileContentType contentType) | |
2860 { | |
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2861 class Operations : public ReadOnlyOperationsT3<FileInfo*, std::string, FileContentType> |
4555 | 2862 { |
2863 private: | |
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2864 bool found_; |
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2865 |
4555 | 2866 public: |
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templates to reduce verbosity in ServerIndex implementation
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2867 Operations() : |
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templates to reduce verbosity in ServerIndex implementation
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2868 found_(false) |
4555 | 2869 { |
2870 } | |
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2871 |
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templates to reduce verbosity in ServerIndex implementation
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2872 bool HasFound() const |
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templates to reduce verbosity in ServerIndex implementation
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2873 { |
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2874 return found_; |
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2875 } |
4555 | 2876 |
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templates to reduce verbosity in ServerIndex implementation
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2877 virtual void ApplyTuple(ReadOnlyTransaction& transaction, |
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2878 const Tuple& tuple) ORTHANC_OVERRIDE |
4555 | 2879 { |
2880 int64_t internalId; | |
2881 ResourceType type; | |
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|
2882 if (!transaction.LookupResource(internalId, type, tuple.get<1>())) |
4555 | 2883 { |
2884 throw OrthancException(ErrorCode_UnknownResource); | |
2885 } | |
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templates to reduce verbosity in ServerIndex implementation
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2886 else if (transaction.LookupAttachment(*tuple.get<0>(), internalId, tuple.get<2>())) |
4555 | 2887 { |
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templates to reduce verbosity in ServerIndex implementation
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|
2888 assert(tuple.get<0>()->GetContentType() == tuple.get<2>()); |
4555 | 2889 found_ = true; |
2890 } | |
2891 else | |
2892 { | |
2893 found_ = false; | |
2894 } | |
2895 } | |
2896 }; | |
2897 | |
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templates to reduce verbosity in ServerIndex implementation
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2898 Operations operations; |
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templates to reduce verbosity in ServerIndex implementation
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|
2899 operations.Apply(*this, &attachment, instancePublicId, contentType); |
4555 | 2900 return operations.HasFound(); |
2901 } | |
2902 | |
2903 | |
2904 void ServerIndex::GetAllUuids(std::list<std::string>& target, | |
2905 ResourceType resourceType) | |
2906 { | |
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2907 class Operations : public ReadOnlyOperationsT2<std::list<std::string>*, ResourceType> |
4555 | 2908 { |
2909 public: | |
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templates to reduce verbosity in ServerIndex implementation
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2910 virtual void ApplyTuple(ReadOnlyTransaction& transaction, |
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2911 const Tuple& tuple) ORTHANC_OVERRIDE |
4555 | 2912 { |
4558 | 2913 // TODO - CANDIDATE FOR "TransactionType_SingleStatement" |
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2914 transaction.GetAllPublicIds(*tuple.get<0>(), tuple.get<1>()); |
4555 | 2915 } |
2916 }; | |
2917 | |
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2918 Operations operations; |
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2919 operations.Apply(*this, &target, resourceType); |
4555 | 2920 } |
2921 | |
2922 | |
2923 void ServerIndex::GetAllUuids(std::list<std::string>& target, | |
2924 ResourceType resourceType, | |
2925 size_t since, | |
2926 size_t limit) | |
2927 { | |
2928 if (limit == 0) | |
2929 { | |
2930 target.clear(); | |
2931 } | |
2932 else | |
2933 { | |
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2934 class Operations : public ReadOnlyOperationsT4<std::list<std::string>*, ResourceType, size_t, size_t> |
4555 | 2935 { |
2936 public: | |
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2937 virtual void ApplyTuple(ReadOnlyTransaction& transaction, |
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2938 const Tuple& tuple) ORTHANC_OVERRIDE |
4555 | 2939 { |
4558 | 2940 // TODO - CANDIDATE FOR "TransactionType_SingleStatement" |
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2941 transaction.GetAllPublicIds(*tuple.get<0>(), tuple.get<1>(), tuple.get<2>(), tuple.get<3>()); |
4555 | 2942 } |
2943 }; | |
2944 | |
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2945 Operations operations; |
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2946 operations.Apply(*this, &target, resourceType, since, limit); |
4555 | 2947 } |
2948 } | |
4558 | 2949 |
2950 | |
2951 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize, | |
2952 /* out */ uint64_t& uncompressedSize, | |
2953 /* out */ uint64_t& countPatients, | |
2954 /* out */ uint64_t& countStudies, | |
2955 /* out */ uint64_t& countSeries, | |
2956 /* out */ uint64_t& countInstances) | |
2957 { | |
2958 class Operations : public ReadOnlyOperationsT6<uint64_t*, uint64_t*, uint64_t*, uint64_t*, uint64_t*, uint64_t*> | |
2959 { | |
2960 public: | |
2961 virtual void ApplyTuple(ReadOnlyTransaction& transaction, | |
2962 const Tuple& tuple) ORTHANC_OVERRIDE | |
2963 { | |
2964 *tuple.get<0>() = transaction.GetTotalCompressedSize(); | |
2965 *tuple.get<1>() = transaction.GetTotalUncompressedSize(); | |
2966 *tuple.get<2>() = transaction.GetResourceCount(ResourceType_Patient); | |
2967 *tuple.get<3>() = transaction.GetResourceCount(ResourceType_Study); | |
2968 *tuple.get<4>() = transaction.GetResourceCount(ResourceType_Series); | |
2969 *tuple.get<5>() = transaction.GetResourceCount(ResourceType_Instance); | |
2970 } | |
2971 }; | |
2972 | |
2973 Operations operations; | |
2974 operations.Apply(*this, &diskSize, &uncompressedSize, &countPatients, | |
2975 &countStudies, &countSeries, &countInstances); | |
2976 } | |
2977 | |
2978 | |
2979 void ServerIndex::GetChanges(Json::Value& target, | |
2980 int64_t since, | |
2981 unsigned int maxResults) | |
2982 { | |
2983 class Operations : public ReadOnlyOperationsT3<Json::Value*, int64_t, unsigned int> | |
2984 { | |
2985 public: | |
2986 virtual void ApplyTuple(ReadOnlyTransaction& transaction, | |
2987 const Tuple& tuple) ORTHANC_OVERRIDE | |
2988 { | |
2989 // NB: In Orthanc <= 1.3.2, a transaction was missing, as | |
2990 // "GetLastChange()" involves calls to "GetPublicId()" | |
2991 | |
2992 std::list<ServerIndexChange> changes; | |
2993 bool done; | |
2994 bool hasLast = false; | |
2995 int64_t last = 0; | |
2996 | |
2997 transaction.GetChanges(changes, done, tuple.get<1>(), tuple.get<2>()); | |
2998 if (changes.empty()) | |
2999 { | |
3000 last = transaction.GetLastChangeIndex(); | |
3001 hasLast = true; | |
3002 } | |
3003 | |
3004 FormatLog(*tuple.get<0>(), changes, "Changes", done, tuple.get<1>(), hasLast, last); | |
3005 } | |
3006 }; | |
3007 | |
3008 Operations operations; | |
3009 operations.Apply(*this, &target, since, maxResults); | |
3010 } | |
3011 | |
3012 | |
3013 void ServerIndex::GetLastChange(Json::Value& target) | |
3014 { | |
3015 class Operations : public ReadOnlyOperationsT1<Json::Value*> | |
3016 { | |
3017 public: | |
3018 virtual void ApplyTuple(ReadOnlyTransaction& transaction, | |
3019 const Tuple& tuple) ORTHANC_OVERRIDE | |
3020 { | |
3021 // NB: In Orthanc <= 1.3.2, a transaction was missing, as | |
3022 // "GetLastChange()" involves calls to "GetPublicId()" | |
3023 | |
3024 std::list<ServerIndexChange> changes; | |
3025 bool hasLast = false; | |
3026 int64_t last = 0; | |
3027 | |
3028 transaction.GetLastChange(changes); | |
3029 if (changes.empty()) | |
3030 { | |
3031 last = transaction.GetLastChangeIndex(); | |
3032 hasLast = true; | |
3033 } | |
3034 | |
3035 FormatLog(*tuple.get<0>(), changes, "Changes", true, 0, hasLast, last); | |
3036 } | |
3037 }; | |
3038 | |
3039 Operations operations; | |
3040 operations.Apply(*this, &target); | |
3041 } | |
3042 | |
3043 | |
3044 void ServerIndex::GetExportedResources(Json::Value& target, | |
3045 int64_t since, | |
3046 unsigned int maxResults) | |
3047 { | |
3048 class Operations : public ReadOnlyOperationsT3<Json::Value*, int64_t, unsigned int> | |
3049 { | |
3050 public: | |
3051 virtual void ApplyTuple(ReadOnlyTransaction& transaction, | |
3052 const Tuple& tuple) ORTHANC_OVERRIDE | |
3053 { | |
3054 // TODO - CANDIDATE FOR "TransactionType_SingleStatement" | |
3055 | |
3056 std::list<ExportedResource> exported; | |
3057 bool done; | |
3058 transaction.GetExportedResources(exported, done, tuple.get<1>(), tuple.get<2>()); | |
3059 FormatLog(*tuple.get<0>(), exported, "Exports", done, tuple.get<1>(), false, -1); | |
3060 } | |
3061 }; | |
3062 | |
3063 Operations operations; | |
3064 operations.Apply(*this, &target, since, maxResults); | |
3065 } | |
3066 | |
3067 | |
3068 void ServerIndex::GetLastExportedResource(Json::Value& target) | |
3069 { | |
3070 class Operations : public ReadOnlyOperationsT1<Json::Value*> | |
3071 { | |
3072 public: | |
3073 virtual void ApplyTuple(ReadOnlyTransaction& transaction, | |
3074 const Tuple& tuple) ORTHANC_OVERRIDE | |
3075 { | |
3076 // TODO - CANDIDATE FOR "TransactionType_SingleStatement" | |
3077 | |
3078 std::list<ExportedResource> exported; | |
3079 transaction.GetLastExportedResource(exported); | |
3080 FormatLog(*tuple.get<0>(), exported, "Exports", true, 0, false, -1); | |
3081 } | |
3082 }; | |
3083 | |
3084 Operations operations; | |
3085 operations.Apply(*this, &target); | |
3086 } | |
0 | 3087 } |