Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerIndex.cpp @ 4501:11c2ddb4e2ca

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FromDcmtkBridge::LogMissingTagsForStore()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 09 Feb 2021 15:24:36 +0100
parents 6f99949b2878
children 97d103b57cd1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "ServerIndex.h"
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36
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37 #ifndef NOMINMAX
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38 #define NOMINMAX
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39 #endif
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40
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41 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h"
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42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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43 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h"
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44 #include "../../OrthancFramework/Sources/Logging.h"
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45 #include "../../OrthancFramework/Sources/Toolbox.h"
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46
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47 #include "Database/ResourcesContent.h"
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48 #include "DicomInstanceToStore.h"
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49 #include "OrthancConfiguration.h"
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50 #include "Search/DatabaseLookup.h"
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51 #include "Search/DicomTagConstraint.h"
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52 #include "ServerContext.h"
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53 #include "ServerIndexChange.h"
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54 #include "ServerToolbox.h"
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56 #include <boost/lexical_cast.hpp>
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57 #include <stdio.h>
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58 #include <stack>
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59
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60 static const uint64_t MEGA_BYTES = 1024 * 1024;
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61
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62 namespace Orthanc
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63 {
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64 static void CopyListToVector(std::vector<std::string>& target,
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65 const std::list<std::string>& source)
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66 {
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67 target.resize(source.size());
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68
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69 size_t pos = 0;
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70
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71 for (std::list<std::string>::const_iterator
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72 it = source.begin(); it != source.end(); ++it)
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73 {
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74 target[pos] = *it;
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75 pos ++;
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76 }
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77 }
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79
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80 class ServerIndex::Listener : public IDatabaseListener
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81 {
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82 private:
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83 struct FileToRemove
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84 {
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85 private:
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86 std::string uuid_;
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87 FileContentType type_;
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88
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89 public:
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90 explicit FileToRemove(const FileInfo& info) :
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91 uuid_(info.GetUuid()),
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92 type_(info.GetContentType())
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93 {
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94 }
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95
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96 const std::string& GetUuid() const
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97 {
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98 return uuid_;
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99 }
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100
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101 FileContentType GetContentType() const
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102 {
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103 return type_;
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104 }
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105 };
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106
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107 ServerContext& context_;
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108 bool hasRemainingLevel_;
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109 ResourceType remainingType_;
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110 std::string remainingPublicId_;
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111 std::list<FileToRemove> pendingFilesToRemove_;
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112 std::list<ServerIndexChange> pendingChanges_;
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113 uint64_t sizeOfFilesToRemove_;
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114 bool insideTransaction_;
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115
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116 void Reset()
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117 {
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118 sizeOfFilesToRemove_ = 0;
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119 hasRemainingLevel_ = false;
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120 pendingFilesToRemove_.clear();
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121 pendingChanges_.clear();
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122 }
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123
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124 public:
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125 explicit Listener(ServerContext& context) :
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126 context_(context),
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127 insideTransaction_(false)
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128 {
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129 Reset();
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130 assert(ResourceType_Patient < ResourceType_Study &&
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131 ResourceType_Study < ResourceType_Series &&
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132 ResourceType_Series < ResourceType_Instance);
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133 }
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134
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135 void StartTransaction()
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136 {
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137 Reset();
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138 insideTransaction_ = true;
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139 }
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140
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141 void EndTransaction()
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142 {
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143 insideTransaction_ = false;
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144 }
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145
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146 uint64_t GetSizeOfFilesToRemove()
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147 {
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148 return sizeOfFilesToRemove_;
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149 }
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150
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151 void CommitFilesToRemove()
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152 {
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153 for (std::list<FileToRemove>::const_iterator
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154 it = pendingFilesToRemove_.begin();
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155 it != pendingFilesToRemove_.end(); ++it)
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156 {
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157 try
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158 {
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159 context_.RemoveFile(it->GetUuid(), it->GetContentType());
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160 }
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161 catch (OrthancException& e)
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162 {
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163 LOG(ERROR) << "Unable to remove an attachment from the storage area: "
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164 << it->GetUuid() << " (type: " << EnumerationToString(it->GetContentType()) << ")";
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165 }
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166 }
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167 }
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168
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169 void CommitChanges()
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170 {
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171 for (std::list<ServerIndexChange>::const_iterator
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172 it = pendingChanges_.begin();
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173 it != pendingChanges_.end(); ++it)
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174 {
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175 context_.SignalChange(*it);
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176 }
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177 }
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178
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179 virtual void SignalRemainingAncestor(ResourceType parentType,
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180 const std::string& publicId)
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181 {
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182 LOG(TRACE) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")";
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183
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184 if (hasRemainingLevel_)
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185 {
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186 if (parentType < remainingType_)
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187 {
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188 remainingType_ = parentType;
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189 remainingPublicId_ = publicId;
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190 }
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191 }
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192 else
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193 {
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194 hasRemainingLevel_ = true;
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195 remainingType_ = parentType;
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196 remainingPublicId_ = publicId;
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197 }
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198 }
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199
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200 virtual void SignalFileDeleted(const FileInfo& info)
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201 {
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202 assert(Toolbox::IsUuid(info.GetUuid()));
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203 pendingFilesToRemove_.push_back(FileToRemove(info));
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204 sizeOfFilesToRemove_ += info.GetCompressedSize();
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205 }
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206
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207 virtual void SignalChange(const ServerIndexChange& change)
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208 {
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209 LOG(TRACE) << "Change related to resource " << change.GetPublicId() << " of type "
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210 << EnumerationToString(change.GetResourceType()) << ": "
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211 << EnumerationToString(change.GetChangeType());
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212
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213 if (insideTransaction_)
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214 {
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215 pendingChanges_.push_back(change);
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216 }
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217 else
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218 {
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219 context_.SignalChange(change);
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220 }
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221 }
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222
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223 bool HasRemainingLevel() const
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224 {
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225 return hasRemainingLevel_;
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226 }
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227
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228 ResourceType GetRemainingType() const
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229 {
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230 assert(HasRemainingLevel());
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231 return remainingType_;
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232 }
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233
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234 const std::string& GetRemainingPublicId() const
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235 {
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236 assert(HasRemainingLevel());
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237 return remainingPublicId_;
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238 }
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239 };
0
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240
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241
278
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242 class ServerIndex::Transaction
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243 {
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244 private:
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245 ServerIndex& index_;
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246 std::unique_ptr<IDatabaseWrapper::ITransaction> transaction_;
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247 bool isCommitted_;
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248
278
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249 public:
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250 explicit Transaction(ServerIndex& index) :
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251 index_(index),
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252 isCommitted_(false)
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253 {
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254 transaction_.reset(index_.db_.StartTransaction());
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255 transaction_->Begin();
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256
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257 index_.listener_->StartTransaction();
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258 }
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259
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260 ~Transaction()
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261 {
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262 index_.listener_->EndTransaction();
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263
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264 if (!isCommitted_)
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265 {
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266 transaction_->Rollback();
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267 }
278
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268 }
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269
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270 void Commit(uint64_t sizeOfAddedFiles)
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271 {
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272 if (!isCommitted_)
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273 {
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274 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) -
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275 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove()));
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276
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277 transaction_->Commit(delta);
278
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278
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279 // We can remove the files once the SQLite transaction has
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280 // been successfully committed. Some files might have to be
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281 // deleted because of recycling.
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282 index_.listener_->CommitFilesToRemove();
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283
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284 // Send all the pending changes to the Orthanc plugins
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285 index_.listener_->CommitChanges();
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286
278
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287 isCommitted_ = true;
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288 }
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289 }
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290 };
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291
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292
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293 class ServerIndex::UnstableResourcePayload
511
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294 {
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295 private:
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296 ResourceType type_;
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297 std::string publicId_;
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298 boost::posix_time::ptime time_;
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299
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300 public:
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301 UnstableResourcePayload() : type_(ResourceType_Instance)
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302 {
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303 }
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304
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305 UnstableResourcePayload(Orthanc::ResourceType type,
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306 const std::string& publicId) :
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307 type_(type),
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308 publicId_(publicId),
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309 time_(boost::posix_time::second_clock::local_time())
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310 {
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311 }
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312
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313 unsigned int GetAge() const
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314 {
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315 return (boost::posix_time::second_clock::local_time() - time_).total_seconds();
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316 }
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317
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318 ResourceType GetResourceType() const
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319 {
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320 return type_;
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321 }
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322
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323 const std::string& GetPublicId() const
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324 {
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325 return publicId_;
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326 }
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327 };
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328
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329
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330 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable
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331 {
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332 private:
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333 class TagInfo
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334 {
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335 private:
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336 ResourceType level_;
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337 DicomTagType type_;
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338
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339 public:
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340 TagInfo()
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341 {
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342 }
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343
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344 TagInfo(ResourceType level,
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345 DicomTagType type) :
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346 level_(level),
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347 type_(type)
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348 {
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349 }
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350
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351 ResourceType GetLevel() const
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352 {
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353 return level_;
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354 }
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355
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356 DicomTagType GetType() const
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357 {
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358 return type_;
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359 }
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360 };
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361
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362 typedef std::map<DicomTag, TagInfo> Registry;
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363
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364
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365 Registry registry_;
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366
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367 void LoadTags(ResourceType level)
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368 {
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369 {
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370 const DicomTag* tags = NULL;
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371 size_t size;
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372
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373 ServerToolbox::LoadIdentifiers(tags, size, level);
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374
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375 for (size_t i = 0; i < size; i++)
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376 {
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377 if (registry_.find(tags[i]) == registry_.end())
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378 {
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379 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier);
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380 }
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381 else
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382 {
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383 // These patient-level tags are copied in the study level
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384 assert(level == ResourceType_Study &&
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385 (tags[i] == DICOM_TAG_PATIENT_ID ||
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386 tags[i] == DICOM_TAG_PATIENT_NAME ||
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387 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE));
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388 }
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389 }
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390 }
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391
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392 {
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393 std::set<DicomTag> tags;
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394 DicomMap::GetMainDicomTags(tags, level);
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395
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396 for (std::set<DicomTag>::const_iterator
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397 tag = tags.begin(); tag != tags.end(); ++tag)
3027
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398 {
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399 if (registry_.find(*tag) == registry_.end())
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diff changeset
400 {
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diff changeset
401 registry_[*tag] = TagInfo(level, DicomTagType_Main);
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402 }
3027
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403 }
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diff changeset
404 }
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diff changeset
405 }
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diff changeset
406
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diff changeset
407 public:
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diff changeset
408 MainDicomTagsRegistry()
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409 {
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diff changeset
410 LoadTags(ResourceType_Patient);
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diff changeset
411 LoadTags(ResourceType_Study);
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412 LoadTags(ResourceType_Series);
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413 LoadTags(ResourceType_Instance);
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414 }
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415
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416 void LookupTag(ResourceType& level,
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417 DicomTagType& type,
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418 const DicomTag& tag) const
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419 {
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420 Registry::const_iterator it = registry_.find(tag);
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421
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diff changeset
422 if (it == registry_.end())
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diff changeset
423 {
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diff changeset
424 // Default values
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
425 level = ResourceType_Instance;
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426 type = DicomTagType_Generic;
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diff changeset
427 }
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diff changeset
428 else
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diff changeset
429 {
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diff changeset
430 level = it->second.GetLevel();
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diff changeset
431 type = it->second.GetType();
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diff changeset
432 }
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diff changeset
433 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
434 };
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
435
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
436
212
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 206
diff changeset
437 bool ServerIndex::DeleteResource(Json::Value& target,
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 const std::string& uuid,
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
439 ResourceType expectedType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
441 boost::mutex::scoped_lock lock(mutex_);
201
bee20e978835 refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 200
diff changeset
442
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
443 Transaction t(*this);
201
bee20e978835 refactoring of delete
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 200
diff changeset
444
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
445 int64_t id;
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
446 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
447 if (!db_.LookupResource(id, type, uuid) ||
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
448 expectedType != type)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 return false;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
452
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
453 db_.DeleteResource(id);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
455 if (listener_->HasRemainingLevel())
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 {
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
457 ResourceType remainingType = listener_->GetRemainingType();
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
458 const std::string& remainingUuid = listener_->GetRemainingPublicId();
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 target["RemainingAncestor"] = Json::Value(Json::objectValue);
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
461 target["RemainingAncestor"]["Path"] = GetBasePath(remainingType, remainingUuid);
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
462 target["RemainingAncestor"]["Type"] = EnumerationToString(remainingType);
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
463 target["RemainingAncestor"]["ID"] = remainingUuid;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 target["RemainingAncestor"] = Json::nullValue;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
470 t.Commit(0);
264
5b8e8b74bc8b remove files only after the sqlite transaction has succeeded
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 240
diff changeset
471
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 return true;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
476 void ServerIndex::FlushThread(ServerIndex* that,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
477 unsigned int threadSleep)
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
478 {
1102
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
479 // By default, wait for 10 seconds before flushing
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
480 unsigned int sleep = 10;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
481
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
482 try
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
483 {
744
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 739
diff changeset
484 boost::mutex::scoped_lock lock(that->mutex_);
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
485 std::string sleepString;
1102
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
486
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
487 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) &&
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
488 Toolbox::IsInteger(sleepString))
1102
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
489 {
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
490 sleep = boost::lexical_cast<unsigned int>(sleepString);
ce6386b37afd avoid unnecessary exceptions on Orthanc startup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1006
diff changeset
491 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
492 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
493 catch (boost::bad_lexical_cast&)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
494 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
495 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
496
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
497 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")";
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
498
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
499 unsigned int count = 0;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
500
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
501 while (!that->done_)
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
502 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
503 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep));
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
504 count++;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
505 if (count < sleep)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
506 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
507 continue;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
508 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
509
2217
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
510 Logging::Flush();
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
511
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
512 boost::mutex::scoped_lock lock(that->mutex_);
3698
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
513
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
514 try
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
515 {
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
516 that->db_.FlushToDisk();
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
517 }
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
518 catch (OrthancException&)
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
519 {
3699
efa815dd2c20 additional logging
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3698
diff changeset
520 LOG(ERROR) << "Cannot flush the SQLite database to the disk (is your filesystem full?)";
3698
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
521 }
356ebef2cd95 prevent crash on full disk
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
522
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
523 count = 0;
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
524 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
525
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
526 LOG(INFO) << "Stopping the database flushing thread";
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
527 }
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
528
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
529
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
530 static bool ComputeExpectedNumberOfInstances(int64_t& target,
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
531 const DicomMap& dicomSummary)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
532 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
533 try
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
534 {
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
535 const DicomValue* value;
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
536 const DicomValue* value2;
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
537
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
538 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL &&
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
539 !value->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
540 !value->IsBinary() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
541 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
542 !value2->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
543 !value2->IsBinary())
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
544 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
545 // Patch for series with temporal positions thanks to Will Ryder
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
546 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent());
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
547 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent());
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
548 target = imagesInAcquisition * countTemporalPositions;
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
549 return (target > 0);
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
550 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
551
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
552 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL &&
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
553 !value->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
554 !value->IsBinary() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
555 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
556 !value2->IsBinary() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
557 !value2->IsNull())
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
558 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
559 // Support of Cardio-PET images
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
560 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent());
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
561 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent());
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
562 target = numberOfSlices * numberOfTimeSlices;
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
563 return (target > 0);
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
564 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
565
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
566 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
567 !value->IsNull() &&
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
568 !value->IsBinary())
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
569 {
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
570 target = boost::lexical_cast<int64_t>(value->GetContent());
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
571 return (target > 0);
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
572 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
573 }
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
574 catch (OrthancException&)
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
575 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
576 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
577 catch (boost::bad_lexical_cast&)
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
578 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
579 }
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
580
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
581 return false;
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
582 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
583
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
584
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
585
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
586
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
587 static bool LookupStringMetadata(std::string& result,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
588 const std::map<MetadataType, std::string>& metadata,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
589 MetadataType type)
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
590 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
591 std::map<MetadataType, std::string>::const_iterator found = metadata.find(type);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
592
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
593 if (found == metadata.end())
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
594 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
595 return false;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
596 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
597 else
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
598 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
599 result = found->second;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
600 return true;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
601 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
602 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
603
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
604
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
605 static bool LookupIntegerMetadata(int64_t& result,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
606 const std::map<MetadataType, std::string>& metadata,
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
607 MetadataType type)
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
608 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
609 std::string s;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
610 if (!LookupStringMetadata(s, metadata, type))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
611 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
612 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
613 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
614
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
615 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
616 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
617 result = boost::lexical_cast<int64_t>(s);
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
618 return true;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
619 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
620 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
621 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
622 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
623 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
624 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
625
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
626
1297
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
627 void ServerIndex::LogChange(int64_t internalId,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
628 ChangeType changeType,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
629 ResourceType resourceType,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
630 const std::string& publicId)
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
631 {
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
632 ServerIndexChange change(changeType, resourceType, publicId);
1300
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
633
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
634 if (changeType <= ChangeType_INTERNAL_LastLogged)
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
635 {
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
636 db_.LogChange(internalId, change);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
637 }
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
638
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
639 assert(listener_.get() != NULL);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
640 listener_->SignalChange(change);
1297
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
641 }
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
642
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
643
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
644 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
645 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
646 std::string oldValue;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
647
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
648 if (db_.LookupGlobalProperty(oldValue, property))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
649 {
4371
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
650 uint64_t oldNumber;
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
651
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
652 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
653 {
4371
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
654 oldNumber = boost::lexical_cast<uint64_t>(oldValue);
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
655 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
656 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
657 {
4371
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
658 LOG(ERROR) << "Cannot read the global sequence "
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
659 << boost::lexical_cast<std::string>(property) << ", resetting it";
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
660 oldNumber = 0;
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
661 }
4371
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
662
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
663 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1));
4a3ba4bf4ba7 making ServerIndex::IncrementGlobalSequence() more fault-tolerant
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
664 return oldNumber + 1;
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
665 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
666 else
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
667 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
668 // Initialize the sequence at "1"
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
669 db_.SetGlobalProperty(property, "1");
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
670 return 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
671 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
672 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
673
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
674
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
675
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
676 ServerIndex::ServerIndex(ServerContext& context,
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
677 IDatabaseWrapper& db,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
678 unsigned int threadSleep) :
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
679 done_(false),
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
680 db_(db),
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
681 maximumStorageSize_(0),
2826
c277e0421200 unit testing of overwriting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
682 maximumPatients_(0),
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
683 mainDicomTagsRegistry_(new MainDicomTagsRegistry)
186
f68c039b0571 preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 180
diff changeset
684 {
1432
0ac74fa21db8 rename IServerIndexListener as IDatabaseListener
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
685 listener_.reset(new Listener(context));
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
686 db_.SetListener(*listener_);
180
626777d01dc4 use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
687
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
688 // Initial recycling if the parameters have changed since the last
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
689 // execution of Orthanc
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
690 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
691
1306
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
692 if (db.HasFlushToDisk())
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
693 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
694 flushThread_ = boost::thread(FlushThread, this, threadSleep);
1306
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
695 }
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
696
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
697 unstableResourcesMonitorThread_ = boost::thread
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
698 (UnstableResourcesMonitorThread, this, threadSleep);
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
699 }
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
700
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
701
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
702
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
703 ServerIndex::~ServerIndex()
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
704 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
705 if (!done_)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
706 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
707 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!";
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
708 Stop();
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
709 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
710 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
711
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
712
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
713
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
714 void ServerIndex::Stop()
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
715 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
716 if (!done_)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
717 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
718 done_ = true;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
719
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
720 if (db_.HasFlushToDisk() &&
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
721 flushThread_.joinable())
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
722 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
723 flushThread_.join();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
724 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
725
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
726 if (unstableResourcesMonitorThread_.joinable())
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
727 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
728 unstableResourcesMonitorThread_.join();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
729 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
730 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
731 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
732
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
733
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
734 static void SetInstanceMetadata(ResourcesContent& content,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
735 std::map<MetadataType, std::string>& instanceMetadata,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
736 int64_t instance,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
737 MetadataType metadata,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
738 const std::string& value)
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
739 {
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
740 content.AddMetadata(instance, metadata, value);
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
741 instanceMetadata[metadata] = value;
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
742 }
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
743
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
744
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
745 void ServerIndex::SignalNewResource(ChangeType changeType,
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
746 ResourceType level,
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
747 const std::string& publicId,
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
748 int64_t internalId)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
749 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
750 ServerIndexChange change(changeType, level, publicId);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
751 db_.LogChange(internalId, change);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
752
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
753 assert(listener_.get() != NULL);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
754 listener_->SignalChange(change);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
755 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
756
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
757
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
758 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata,
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
759 DicomInstanceToStore& instanceToStore,
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
760 const Attachments& attachments,
4499
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4494
diff changeset
761 bool overwrite,
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4494
diff changeset
762 bool hasPixelDataOffset,
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4494
diff changeset
763 uint64_t pixelDataOffset)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
765 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
766
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
767 const DicomMap& dicomSummary = instanceToStore.GetSummary();
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
768 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata();
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
769
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
770 int64_t expectedInstances;
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
771 const bool hasExpectedInstances =
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
772 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary);
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
773
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
774 instanceMetadata.clear();
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
775
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
776 const std::string hashPatient = instanceToStore.GetHasher().HashPatient();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
777 const std::string hashStudy = instanceToStore.GetHasher().HashStudy();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
778 const std::string hashSeries = instanceToStore.GetHasher().HashSeries();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
779 const std::string hashInstance = instanceToStore.GetHasher().HashInstance();
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
780
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
781 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
782 {
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
783 Transaction t(*this);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
785 IDatabaseWrapper::CreateInstanceResult status;
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
786 int64_t instanceId;
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
787
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
788 // Check whether this instance is already stored
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
789 if (!db_.CreateInstance(status, instanceId, hashPatient,
3082
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
790 hashStudy, hashSeries, hashInstance))
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
791 {
3082
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
792 // The instance already exists
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
793
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
794 if (overwrite)
3082
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
795 {
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
796 // Overwrite the old instance
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
797 LOG(INFO) << "Overwriting instance: " << hashInstance;
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
798 db_.DeleteResource(instanceId);
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
799
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
800 // Re-create the instance, now that the old one is removed
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
801 if (!db_.CreateInstance(status, instanceId, hashPatient,
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
802 hashStudy, hashSeries, hashInstance))
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
803 {
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
804 throw OrthancException(ErrorCode_InternalError);
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
805 }
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
806 }
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
807 else
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
808 {
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
809 // Do nothing if the instance already exists and overwriting is disabled
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
810 db_.GetAllMetadata(instanceMetadata, instanceId);
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
811 return StoreStatus_AlreadyStored;
847a0ed92654 new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3080
diff changeset
812 }
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
813 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
814
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
815
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
816 // Warn about the creation of new resources. The order must be
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
817 // from instance to patient.
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
818
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
819 // NB: In theory, could be sped up by grouping the underlying
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
820 // calls to "db_.LogChange()". However, this would only have an
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
821 // impact when new patient/study/series get created, which
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
822 // occurs far less often that creating new instances. The
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
823 // positive impact looks marginal in practice.
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
824 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
825
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
826 if (status.isNewSeries_)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
827 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
828 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
829 }
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
830
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
831 if (status.isNewStudy_)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
832 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
833 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
834 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
835
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
836 if (status.isNewPatient_)
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
837 {
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
838 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
839 }
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
840
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
841
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
842 // Ensure there is enough room in the storage for the new instance
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
843 uint64_t instanceSize = 0;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
844 for (Attachments::const_iterator it = attachments.begin();
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
845 it != attachments.end(); ++it)
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
846 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
847 instanceSize += it->GetCompressedSize();
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
848 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
849
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
850 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */);
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
851
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
852
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
853 // Attach the files to the newly created instance
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
854 for (Attachments::const_iterator it = attachments.begin();
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
855 it != attachments.end(); ++it)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
856 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
857 db_.AddAttachment(instanceId, *it);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
858 }
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
859
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
860
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
861 {
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
862 ResourcesContent content;
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
863
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
864 // Populate the tags of the newly-created resources
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
865
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
866 content.AddResource(instanceId, ResourceType_Instance, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
867
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
868 if (status.isNewSeries_)
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
869 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
870 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
871 }
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
872
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
873 if (status.isNewStudy_)
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
874 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
875 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
876 }
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
877
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
878 if (status.isNewPatient_)
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
879 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
880 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
881 }
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
882
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
883
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
884 // Attach the user-specified metadata
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
885
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
886 for (MetadataMap::const_iterator
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
887 it = metadata.begin(); it != metadata.end(); ++it)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
888 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
889 switch (it->first.first)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
890 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
891 case ResourceType_Patient:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
892 content.AddMetadata(status.patientId_, it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
893 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
894
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
895 case ResourceType_Study:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
896 content.AddMetadata(status.studyId_, it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
897 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
898
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
899 case ResourceType_Series:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
900 content.AddMetadata(status.seriesId_, it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
901 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
902
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
903 case ResourceType_Instance:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
904 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
905 it->first.second, it->second);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
906 break;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
907
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
908 default:
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
909 throw OrthancException(ErrorCode_ParameterOutOfRange);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
910 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
911 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
912
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
913
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
914 // Attach the auto-computed metadata for the patient/study/series levels
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
915 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
916 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
917 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
918 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
919
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
920 if (status.isNewSeries_)
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
921 {
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
922 if (hasExpectedInstances)
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
923 {
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
924 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances,
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
925 boost::lexical_cast<std::string>(expectedInstances));
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
926 }
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
927
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
928 // New in Orthanc 1.9.0
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
929 content.AddMetadata(status.seriesId_, MetadataType_RemoteAet,
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
930 instanceToStore.GetOrigin().GetRemoteAetC());
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
931 }
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
932
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
933
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
934 // Attach the auto-computed metadata for the instance level,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
935 // reflecting these additions into the input metadata map
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
936 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
937 MetadataType_Instance_ReceptionDate, now);
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
938 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_RemoteAet,
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
939 instanceToStore.GetOrigin().GetRemoteAetC());
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
940 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
941 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin()));
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
942
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
943
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
944 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
945 std::string s;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
946
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
947 if (instanceToStore.LookupTransferSyntax(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
948 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
949 // New in Orthanc 1.2.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
950 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
951 MetadataType_Instance_TransferSyntax, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
952 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
953
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
954 if (instanceToStore.GetOrigin().LookupRemoteIp(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
955 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
956 // New in Orthanc 1.4.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
957 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
958 MetadataType_Instance_RemoteIp, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
959 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
960
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
961 if (instanceToStore.GetOrigin().LookupCalledAet(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
962 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
963 // New in Orthanc 1.4.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
964 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
965 MetadataType_Instance_CalledAet, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
966 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
967
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
968 if (instanceToStore.GetOrigin().LookupHttpUsername(s))
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
969 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
970 // New in Orthanc 1.4.0
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
971 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
972 MetadataType_Instance_HttpUsername, s);
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
973 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
974 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
975
4494
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4488
diff changeset
976 // New in Orthanc 1.9.1
39192eb9b43d New metadata automatically computed at the instance level: "PixelDataOffset"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4488
diff changeset
977 SetInstanceMetadata(content, instanceMetadata, instanceId,
4499
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4494
diff changeset
978 MetadataType_Instance_PixelDataOffset,
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4494
diff changeset
979 (hasPixelDataOffset ?
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4494
diff changeset
980 boost::lexical_cast<std::string>(pixelDataOffset) : ""));
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
981
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
982 const DicomValue* value;
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
983 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL &&
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
984 !value->IsNull() &&
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
985 !value->IsBinary())
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
986 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
987 SetInstanceMetadata(content, instanceMetadata, instanceId,
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
988 MetadataType_Instance_SopClassUid, value->GetContent());
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
989 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
990
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
991
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
992 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL ||
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
993 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL)
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
994 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
995 if (!value->IsNull() &&
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
996 !value->IsBinary())
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
997 {
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
998 SetInstanceMetadata(content, instanceMetadata, instanceId,
4263
61a2bedbae80 sanitize IndexInSeries (we've seen spaces there !)
Alain Mazy <alain@mazy.be>
parents: 4205
diff changeset
999 MetadataType_Instance_IndexInSeries, Toolbox::StripSpaces(value->GetContent()));
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
1000 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
1001 }
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
1002
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
1003
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
1004 db_.SetResourcesContent(content);
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1005 }
3086
74e3e48aa9bd grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3083
diff changeset
1006
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1007
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1008 // Check whether the series of this new instance is now completed
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1009 int64_t expectedNumberOfInstances;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1010 if (ComputeExpectedNumberOfInstances(expectedNumberOfInstances, dicomSummary))
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
1011 {
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1012 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_, expectedNumberOfInstances);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1013 if (seriesStatus == SeriesStatus_Complete)
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1014 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1015 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1016 }
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
1017 }
3087
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3086
diff changeset
1018
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
1019
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1020 // Mark the parent resources of this instance as unstable
3080
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1021 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1022 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy);
1a75595d8e44 started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3075
diff changeset
1023 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1024
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1025 t.Commit(instanceSize);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1026
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1027 return StoreStatus_Success;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1028 }
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1029 catch (OrthancException& e)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1030 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1031 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1032 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1033
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1034 return StoreStatus_Failure;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1035 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1036
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1037
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1038 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1039 /* out */ uint64_t& uncompressedSize,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1040 /* out */ uint64_t& countPatients,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1041 /* out */ uint64_t& countStudies,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1042 /* out */ uint64_t& countSeries,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1043 /* out */ uint64_t& countInstances)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1044 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1045 boost::mutex::scoped_lock lock(mutex_);
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1046 diskSize = db_.GetTotalCompressedSize();
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1047 uncompressedSize = db_.GetTotalUncompressedSize();
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1048 countPatients = db_.GetResourceCount(ResourceType_Patient);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1049 countStudies = db_.GetResourceCount(ResourceType_Study);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1050 countSeries = db_.GetResourceCount(ResourceType_Series);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1051 countInstances = db_.GetResourceCount(ResourceType_Instance);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1052 }
187
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 186
diff changeset
1053
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1054
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1055 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id,
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1056 int64_t expectedNumberOfInstances)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1057 {
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1058 std::list<std::string> values;
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1059 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1060
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1061 std::set<int64_t> instances;
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1062
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1063 for (std::list<std::string>::const_iterator
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1064 it = values.begin(); it != values.end(); ++it)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1065 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1066 int64_t index;
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1067
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1068 try
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1069 {
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1070 index = boost::lexical_cast<int64_t>(*it);
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1071 }
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1072 catch (boost::bad_lexical_cast&)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1073 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1074 return SeriesStatus_Unknown;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1075 }
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1076
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1077 if (!(index > 0 && index <= expectedNumberOfInstances))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1078 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1079 // Out-of-range instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1080 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1081 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1082
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1083 if (instances.find(index) != instances.end())
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1084 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1085 // Twice the same instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1086 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1087 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1088
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1089 instances.insert(index);
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1090 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1091
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1092 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1093 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1094 return SeriesStatus_Complete;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1095 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1096 else
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1097 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1098 return SeriesStatus_Missing;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1099 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1100 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1101
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1102
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
1103 void ServerIndex::MainDicomTagsToJson(Json::Value& target,
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1104 int64_t resourceId,
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1105 ResourceType resourceType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1106 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1107 DicomMap tags;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1108 db_.GetMainDicomTags(tags, resourceId);
1676
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1109
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1110 if (resourceType == ResourceType_Study)
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1111 {
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1112 DicomMap t1, t2;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1113 tags.ExtractStudyInformation(t1);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1114 tags.ExtractPatientInformation(t2);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1115
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1116 target["MainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1117 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1118
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1119 target["PatientMainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1120 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1121 }
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1122 else
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1123 {
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1124 target["MainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1125 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
1126 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1127 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1128
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1129
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1130 bool ServerIndex::LookupResource(Json::Value& result,
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1131 const std::string& publicId,
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1132 ResourceType expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1133 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1134 result = Json::objectValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1135
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1136 boost::mutex::scoped_lock lock(mutex_);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1137
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1138 // Lookup for the requested resource
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1139 int64_t id;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1140 ResourceType type;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1141 std::string parent;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1142 if (!db_.LookupResourceAndParent(id, type, parent, publicId) ||
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1143 type != expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1144 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1145 return false;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1146 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1147
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1148 // Set information about the parent resource (if it exists)
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1149 if (type == ResourceType_Patient)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1150 {
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1151 if (!parent.empty())
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1152 {
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1153 throw OrthancException(ErrorCode_DatabasePlugin);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1154 }
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1155 }
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1156 else
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1157 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1158 if (parent.empty())
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1159 {
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1160 throw OrthancException(ErrorCode_DatabasePlugin);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1161 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1162
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1163 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1164 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1165 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1166 result["ParentPatient"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1167 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1168
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1169 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1170 result["ParentStudy"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1171 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1172
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1173 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1174 result["ParentSeries"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1175 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1176
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1177 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1178 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1179 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1180 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1181
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1182 // List the children resources
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1183 std::list<std::string> children;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1184 db_.GetChildrenPublicId(children, id);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1185
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1186 if (type != ResourceType_Instance)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1187 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1188 Json::Value c = Json::arrayValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1189
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1190 for (std::list<std::string>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1191 it = children.begin(); it != children.end(); ++it)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1192 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1193 c.append(*it);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1194 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1195
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1196 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1197 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1198 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1199 result["Studies"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1200 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1201
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1202 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1203 result["Series"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1204 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1205
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1206 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1207 result["Instances"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1208 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1209
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1210 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1211 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1212 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1213 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1214
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1215 // Extract the metadata
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1216 std::map<MetadataType, std::string> metadata;
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1217 db_.GetAllMetadata(metadata, id);
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1218
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1219 // Set the resource type
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1220 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1221 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1222 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1223 result["Type"] = "Patient";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1224 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1225
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1226 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1227 result["Type"] = "Study";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1228 break;
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1229
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1230 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1231 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1232 result["Type"] = "Series";
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1233
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1234 int64_t i;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1235 if (LookupIntegerMetadata(i, metadata, MetadataType_Series_ExpectedNumberOfInstances))
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1236 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1237 result["ExpectedNumberOfInstances"] = static_cast<int>(i);
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1238 result["Status"] = EnumerationToString(GetSeriesStatus(id, i));
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1239 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1240 else
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1241 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1242 result["ExpectedNumberOfInstances"] = Json::nullValue;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1243 result["Status"] = EnumerationToString(SeriesStatus_Unknown);
3090
31244604f617 starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3087
diff changeset
1244 }
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1245
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1246 break;
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1247 }
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1248
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1249 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1250 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1251 result["Type"] = "Instance";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1252
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1253 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1254 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom))
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1255 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1256 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1257 }
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1258
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1259 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize());
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1260 result["FileUuid"] = attachment.GetUuid();
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1261
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1262 int64_t i;
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1263 if (LookupIntegerMetadata(i, metadata, MetadataType_Instance_IndexInSeries))
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1264 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1265 result["IndexInSeries"] = static_cast<int>(i);
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1266 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1267 else
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1268 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1269 result["IndexInSeries"] = Json::nullValue;
3091
476cba12c2b0 IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3090
diff changeset
1270 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1271
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1272 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1273 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1274
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1275 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1276 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1277 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1278
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1279 // Record the remaining information
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1280 result["ID"] = publicId;
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1281 MainDicomTagsToJson(result, id, type);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1282
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1283 std::string tmp;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1284
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1285 if (LookupStringMetadata(tmp, metadata, MetadataType_AnonymizedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1286 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1287 result["AnonymizedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1288 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1289
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1290 if (LookupStringMetadata(tmp, metadata, MetadataType_ModifiedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1291 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1292 result["ModifiedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1293 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1294
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1295 if (type == ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1296 type == ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1297 type == ResourceType_Series)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1298 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1299 result["IsStable"] = !unstableResources_.Contains(id);
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
1300
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1301 if (LookupStringMetadata(tmp, metadata, MetadataType_LastUpdate))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1302 {
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
1303 result["LastUpdate"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1304 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1305 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1306
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1307 return true;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1308 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1309
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1310
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1311 bool ServerIndex::LookupAttachment(FileInfo& attachment,
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1312 const std::string& instanceUuid,
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
1313 FileContentType contentType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1314 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1315 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1316
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1317 int64_t id;
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1318 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1319 if (!db_.LookupResource(id, type, instanceUuid))
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1320 {
1113
ba5c0908600c Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1102
diff changeset
1321 throw OrthancException(ErrorCode_UnknownResource);
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1322 }
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1323
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1324 if (db_.LookupAttachment(attachment, id, contentType))
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1325 {
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
1326 assert(attachment.GetContentType() == contentType);
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1327 return true;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1328 }
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1329 else
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1330 {
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1331 return false;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1332 }
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1333 }
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1334
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1335
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1336
1354
3dd494f201a1 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1352
diff changeset
1337 void ServerIndex::GetAllUuids(std::list<std::string>& target,
190
b6cef9d45cc3 getallpublicids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 189
diff changeset
1338 ResourceType resourceType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1339 {
1357
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
1340 boost::mutex::scoped_lock lock(mutex_);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
1341 db_.GetAllPublicIds(target, resourceType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1342 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1343
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1344
1509
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1345 void ServerIndex::GetAllUuids(std::list<std::string>& target,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1346 ResourceType resourceType,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1347 size_t since,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1348 size_t limit)
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1349 {
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1350 if (limit == 0)
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1351 {
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1352 target.clear();
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1353 return;
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1354 }
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1355
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1356 boost::mutex::scoped_lock lock(mutex_);
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1357 db_.GetAllPublicIds(target, resourceType, since, limit);
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1358 }
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1359
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1360
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1361 template <typename T>
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1362 static void FormatLog(Json::Value& target,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1363 const std::list<T>& log,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1364 const std::string& name,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1365 bool done,
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1366 int64_t since,
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1367 bool hasLast,
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1368 int64_t last)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1369 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1370 Json::Value items = Json::arrayValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1371 for (typename std::list<T>::const_iterator
1304
7b6925b0890d cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1300
diff changeset
1372 it = log.begin(); it != log.end(); ++it)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1373 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1374 Json::Value item;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1375 it->Format(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1376 items.append(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1377 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1378
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1379 target = Json::objectValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1380 target[name] = items;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1381 target["Done"] = done;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1382
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1383 if (!hasLast)
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1384 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1385 // Best-effort guess of the last index in the sequence
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1386 if (log.empty())
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1387 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1388 last = since;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1389 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1390 else
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1391 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1392 last = log.back().GetSeq();
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1393 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1394 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1395
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1396 target["Last"] = static_cast<int>(last);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1397 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1398
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1399
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1400 void ServerIndex::GetChanges(Json::Value& target,
204
7f4acf490179 changes api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 202
diff changeset
1401 int64_t since,
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1402 unsigned int maxResults)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1403 {
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1404 std::list<ServerIndexChange> changes;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1405 bool done;
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1406 bool hasLast = false;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1407 int64_t last = 0;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1408
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1409 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1410 boost::mutex::scoped_lock lock(mutex_);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1411
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1412 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1413 // "GetLastChange()" involves calls to "GetPublicId()"
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1414 Transaction transaction(*this);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1415
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1416 db_.GetChanges(changes, done, since, maxResults);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1417 if (changes.empty())
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1418 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1419 last = db_.GetLastChangeIndex();
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1420 hasLast = true;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1421 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1422
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1423 transaction.Commit(0);
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1424 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1425
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1426 FormatLog(target, changes, "Changes", done, since, hasLast, last);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1427 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1428
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1429
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1430 void ServerIndex::GetLastChange(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1431 {
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1432 std::list<ServerIndexChange> changes;
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1433 bool hasLast = false;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1434 int64_t last = 0;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1435
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1436 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1437 boost::mutex::scoped_lock lock(mutex_);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1438
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1439 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1440 // "GetLastChange()" involves calls to "GetPublicId()"
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1441 Transaction transaction(*this);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1442
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1443 db_.GetLastChange(changes);
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1444 if (changes.empty())
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1445 {
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1446 last = db_.GetLastChangeIndex();
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1447 hasLast = true;
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1448 }
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1449
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1450 transaction.Commit(0);
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1451 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1452
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1453 FormatLog(target, changes, "Changes", true, 0, hasLast, last);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1454 }
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1455
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1456
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1457 void ServerIndex::LogExportedResource(const std::string& publicId,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1458 const std::string& remoteModality)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1459 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1460 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1461 Transaction transaction(*this);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1462
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1463 int64_t id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1464 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1465 if (!db_.LookupResource(id, type, publicId))
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1466 {
2573
3372c5255333 StoreScuJob, Orthanc Explorer for jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2475
diff changeset
1467 throw OrthancException(ErrorCode_InexistentItem);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1468 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1469
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1470 std::string patientId;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1471 std::string studyInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1472 std::string seriesInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1473 std::string sopInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1474
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1475 int64_t currentId = id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1476 ResourceType currentType = type;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1477
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1478 // Iteratively go up inside the patient/study/series/instance hierarchy
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1479 bool done = false;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1480 while (!done)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1481 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1482 DicomMap map;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1483 db_.GetMainDicomTags(map, currentId);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1484
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1485 switch (currentType)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1486 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1487 case ResourceType_Patient:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1488 if (map.HasTag(DICOM_TAG_PATIENT_ID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1489 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1490 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1491 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1492 done = true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1493 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1494
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1495 case ResourceType_Study:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1496 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1497 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1498 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1499 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1500 currentType = ResourceType_Patient;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1501 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1502
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1503 case ResourceType_Series:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1504 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1505 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1506 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1507 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1508 currentType = ResourceType_Study;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1509 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1510
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1511 case ResourceType_Instance:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1512 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1513 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1514 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1515 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1516 currentType = ResourceType_Series;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1517 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1518
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1519 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1520 throw OrthancException(ErrorCode_InternalError);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1521 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1522
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1523 // If we have not reached the Patient level, find the parent of
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1524 // the current resource
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1525 if (!done)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1526 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1527 bool ok = db_.LookupParent(currentId, currentId);
4121
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1528 (void) ok; // Remove warning about unused variable in release builds
375
d1ea72f1c967 major fix of storescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1529 assert(ok);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1530 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1531 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1532
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1533 ExportedResource resource(-1,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1534 type,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1535 publicId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1536 remoteModality,
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1537 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */),
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1538 patientId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1539 studyInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1540 seriesInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1541 sopInstanceUid);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1542
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1543 db_.LogExportedResource(resource);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1544 transaction.Commit(0);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1545 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1546
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1547
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1548 void ServerIndex::GetExportedResources(Json::Value& target,
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1549 int64_t since,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1550 unsigned int maxResults)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1551 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1552 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1553 bool done;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1554
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1555 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1556 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1557 db_.GetExportedResources(exported, done, since, maxResults);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1558 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1559
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1560 FormatLog(target, exported, "Exports", done, since, false, -1);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1561 }
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1562
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1563
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1564 void ServerIndex::GetLastExportedResource(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1565 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1566 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1567
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1568 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1569 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1570 db_.GetLastExportedResource(exported);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1571 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1572
3105
2e1711f80f74 More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3094
diff changeset
1573 FormatLog(target, exported, "Exports", true, 0, false, -1);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1574 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1575
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1576
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1577 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1578 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1579 if (maximumStorageSize_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1580 {
3020
d207f6ac1f86 tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3019
diff changeset
1581 assert(maximumStorageSize_ >= instanceSize);
d207f6ac1f86 tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3019
diff changeset
1582
d207f6ac1f86 tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3019
diff changeset
1583 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize))
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1584 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1585 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1586 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1587 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1588
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1589 if (maximumPatients_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1590 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1591 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1592 if (patientCount > maximumPatients_)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1593 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1594 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1595 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1596 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1597
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1598 return false;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1599 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1600
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1601
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1602 void ServerIndex::Recycle(uint64_t instanceSize,
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1603 const std::string& newPatientId)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1604 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1605 if (!IsRecyclingNeeded(instanceSize))
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1606 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1607 return;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1608 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1609
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1610 // Check whether other DICOM instances from this patient are
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1611 // already stored
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1612 int64_t patientToAvoid;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1613 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1614 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1615
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1616 if (hasPatientToAvoid && type != ResourceType_Patient)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1617 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1618 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1619 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1620
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1621 // Iteratively select patient to remove until there is enough
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1622 // space in the DICOM store
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1623 int64_t patientToRecycle;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1624 while (true)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1625 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1626 // If other instances of this patient are already in the store,
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1627 // we must avoid to recycle them
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1628 bool ok = hasPatientToAvoid ?
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1629 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) :
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1630 db_.SelectPatientToRecycle(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1631
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1632 if (!ok)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1633 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1634 throw OrthancException(ErrorCode_FullStorage);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1635 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1636
4268
0ae2ca210077 new macro TLOG() to replace VLOG() for trace logs with a category
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4263
diff changeset
1637 LOG(TRACE) << "Recycling one patient";
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1638 db_.DeleteResource(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1639
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1640 if (!IsRecyclingNeeded(instanceSize))
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1641 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1642 // OK, we're done
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1643 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1644 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1645 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1646 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1647
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1648 void ServerIndex::SetMaximumPatientCount(unsigned int count)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1649 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1650 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1651 maximumPatients_ = count;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1652
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1653 if (count == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1654 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1655 LOG(WARNING) << "No limit on the number of stored patients";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1656 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1657 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1658 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1659 LOG(WARNING) << "At most " << count << " patients will be stored";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1660 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1661
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1662 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1663 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1664
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1665 void ServerIndex::SetMaximumStorageSize(uint64_t size)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1666 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1667 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1668 maximumStorageSize_ = size;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1669
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1670 if (size == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1671 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1672 LOG(WARNING) << "No limit on the size of the storage area";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1673 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1674 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1675 {
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1676 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area";
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1677 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1678
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1679 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1680 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1681
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1682
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1683 void ServerIndex::StandaloneRecycling()
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1684 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1685 // WARNING: No mutex here, do not include this as a public method
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1686 Transaction t(*this);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1687 Recycle(0, "");
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1688 t.Commit(0);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1689 }
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1690
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1691
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1692 bool ServerIndex::IsProtectedPatient(const std::string& publicId)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1693 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1694 boost::mutex::scoped_lock lock(mutex_);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1695
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1696 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1697 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1698 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1699 if (!db_.LookupResource(id, type, publicId) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1700 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1701 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1702 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1703 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1704
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1705 return db_.IsProtectedPatient(id);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1706 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1707
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1708
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1709 void ServerIndex::SetProtectedPatient(const std::string& publicId,
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1710 bool isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1711 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1712 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1713 Transaction transaction(*this);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1714
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1715 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1716 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1717 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1718 if (!db_.LookupResource(id, type, publicId) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1719 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1720 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1721 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1722 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1723
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1724 db_.SetProtectedPatient(id, isProtected);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1725 transaction.Commit(0);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1726
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1727 if (isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1728 LOG(INFO) << "Patient " << publicId << " has been protected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1729 else
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1730 LOG(INFO) << "Patient " << publicId << " has been unprotected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1731 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1732
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1733
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1734 void ServerIndex::GetChildren(std::list<std::string>& result,
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1735 const std::string& publicId)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1736 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1737 result.clear();
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1738
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1739 boost::mutex::scoped_lock lock(mutex_);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1740
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1741 ResourceType type;
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1742 int64_t resource;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1743 if (!db_.LookupResource(resource, type, publicId))
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1744 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1745 throw OrthancException(ErrorCode_UnknownResource);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1746 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1747
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1748 if (type == ResourceType_Instance)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1749 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1750 // An instance cannot have a child
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1751 throw OrthancException(ErrorCode_BadParameterType);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1752 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1753
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1754 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1755 db_.GetChildrenInternalId(tmp, resource);
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1756
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1757 for (std::list<int64_t>::const_iterator
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1758 it = tmp.begin(); it != tmp.end(); ++it)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1759 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1760 result.push_back(db_.GetPublicId(*it));
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1761 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1762 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1763
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1764
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1765 void ServerIndex::GetChildInstances(std::list<std::string>& result,
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1766 const std::string& publicId)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1767 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1768 result.clear();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1769
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1770 boost::mutex::scoped_lock lock(mutex_);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1771
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1772 ResourceType type;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1773 int64_t top;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1774 if (!db_.LookupResource(top, type, publicId))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1775 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1776 throw OrthancException(ErrorCode_UnknownResource);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1777 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1778
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1779 if (type == ResourceType_Instance)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1780 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1781 // The resource is already an instance: Do not go down the hierarchy
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1782 result.push_back(publicId);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1783 return;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1784 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1785
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1786 std::stack<int64_t> toExplore;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1787 toExplore.push(top);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1788
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1789 std::list<int64_t> tmp;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1790
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1791 while (!toExplore.empty())
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1792 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1793 // Get the internal ID of the current resource
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1794 int64_t resource = toExplore.top();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1795 toExplore.pop();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1796
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1797 if (db_.GetResourceType(resource) == ResourceType_Instance)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1798 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1799 result.push_back(db_.GetPublicId(resource));
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1800 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1801 else
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1802 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1803 // Tag all the children of this resource as to be explored
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1804 db_.GetChildrenInternalId(tmp, resource);
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1805 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1806 it = tmp.begin(); it != tmp.end(); ++it)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1807 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1808 toExplore.push(*it);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1809 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1810 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1811 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1812 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1813
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1814
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1815 void ServerIndex::SetMetadata(const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1816 MetadataType type,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1817 const std::string& value)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1818 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1819 boost::mutex::scoped_lock lock(mutex_);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1820 Transaction t(*this);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1821
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1822 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1823 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1824 if (!db_.LookupResource(id, rtype, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1825 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1826 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1827 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1828
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1829 db_.SetMetadata(id, type, value);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1830
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1831 if (IsUserMetadata(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1832 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1833 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1834 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1835
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1836 t.Commit(0);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1837 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1838
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1839
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1840 void ServerIndex::DeleteMetadata(const std::string& publicId,
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1841 MetadataType type)
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1842 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1843 boost::mutex::scoped_lock lock(mutex_);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1844 Transaction t(*this);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1845
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1846 ResourceType rtype;
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1847 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1848 if (!db_.LookupResource(id, rtype, publicId))
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1849 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1850 throw OrthancException(ErrorCode_UnknownResource);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1851 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1852
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1853 db_.DeleteMetadata(id, type);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1854
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1855 if (IsUserMetadata(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1856 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1857 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1858 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1859
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1860 t.Commit(0);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1861 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1862
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1863
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1864 bool ServerIndex::LookupMetadata(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1865 const std::string& publicId,
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1866 ResourceType expectedType,
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1867 MetadataType type)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1868 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1869 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1870
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1871 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1872 int64_t id;
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1873 if (!db_.LookupResource(id, rtype, publicId) ||
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1874 rtype != expectedType)
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1875 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1876 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1877 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1878
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1879 return db_.LookupMetadata(target, id, type);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1880 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1881
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1882
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1883 void ServerIndex::GetAllMetadata(std::map<MetadataType, std::string>& target,
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1884 const std::string& publicId,
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1885 ResourceType expectedType)
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1886 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1887 boost::mutex::scoped_lock lock(mutex_);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1888
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1889 ResourceType type;
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1890 int64_t id;
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1891 if (!db_.LookupResource(id, type, publicId) ||
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1892 expectedType != type)
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1893 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1894 throw OrthancException(ErrorCode_UnknownResource);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1895 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1896
3187
4bbadcd03966 refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1897 return db_.GetAllMetadata(target, id);
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1898 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1899
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1900
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1901 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1902 const std::string& publicId,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1903 ResourceType expectedType)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1904 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1905 boost::mutex::scoped_lock lock(mutex_);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1906
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1907 ResourceType type;
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1908 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1909 if (!db_.LookupResource(id, type, publicId) ||
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1910 expectedType != type)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1911 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1912 throw OrthancException(ErrorCode_UnknownResource);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1913 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1914
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1915 db_.ListAvailableAttachments(target, id);
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1916 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1917
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1918
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1919 bool ServerIndex::LookupParent(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1920 const std::string& publicId)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1921 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1922 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1923
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1924 ResourceType type;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1925 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1926 if (!db_.LookupResource(id, type, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1927 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1928 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1929 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1930
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1931 int64_t parentId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1932 if (db_.LookupParent(parentId, id))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1933 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1934 target = db_.GetPublicId(parentId);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1935 return true;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1936 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1937 else
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1938 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1939 return false;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1940 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1941 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1942
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1943
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1944 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1945 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1946 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1947 Transaction transaction(*this);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1948
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1949 uint64_t seq = IncrementGlobalSequenceInternal(sequence);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1950 transaction.Commit(0);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1951
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1952 return seq;
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1953 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1954
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1955
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1956
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1957 void ServerIndex::LogChange(ChangeType changeType,
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1958 const std::string& publicId)
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1959 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1960 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1961 Transaction transaction(*this);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1962
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1963 int64_t id;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1964 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1965 if (!db_.LookupResource(id, type, publicId))
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1966 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1967 throw OrthancException(ErrorCode_UnknownResource);
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1968 }
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1969
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1970 LogChange(id, changeType, type, publicId);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1971 transaction.Commit(0);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1972 }
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1973
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1974
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1975 void ServerIndex::DeleteChanges()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1976 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1977 boost::mutex::scoped_lock lock(mutex_);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1978
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1979 Transaction transaction(*this);
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
1980 db_.ClearChanges();
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1981 transaction.Commit(0);
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1982 }
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1983
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1984 void ServerIndex::DeleteExportedResources()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1985 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1986 boost::mutex::scoped_lock lock(mutex_);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1987
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1988 Transaction transaction(*this);
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
1989 db_.ClearExportedResources();
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
1990 transaction.Commit(0);
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1991 }
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1992
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1993
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1994 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type,
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
1995 /* out */ uint64_t& diskSize,
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1996 /* out */ uint64_t& uncompressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1997 /* out */ unsigned int& countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1998 /* out */ unsigned int& countSeries,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1999 /* out */ unsigned int& countInstances,
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2000 /* out */ uint64_t& dicomDiskSize,
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2001 /* out */ uint64_t& dicomUncompressedSize,
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2002 const std::string& publicId)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2003 {
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2004 boost::mutex::scoped_lock lock(mutex_);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2005
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2006 int64_t top;
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2007 if (!db_.LookupResource(top, type, publicId))
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2008 {
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2009 throw OrthancException(ErrorCode_UnknownResource);
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2010 }
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2011
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2012 std::stack<int64_t> toExplore;
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3105
diff changeset
2013 toExplore.push(top);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2014
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2015 countInstances = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2016 countSeries = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2017 countStudies = 0;
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2018 diskSize = 0;
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2019 uncompressedSize = 0;
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2020 dicomDiskSize = 0;
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2021 dicomUncompressedSize = 0;
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2022
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2023 while (!toExplore.empty())
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2024 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2025 // Get the internal ID of the current resource
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2026 int64_t resource = toExplore.top();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2027 toExplore.pop();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2028
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2029 ResourceType thisType = db_.GetResourceType(resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2030
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2031 std::list<FileContentType> f;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2032 db_.ListAvailableAttachments(f, resource);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2033
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2034 for (std::list<FileContentType>::const_iterator
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2035 it = f.begin(); it != f.end(); ++it)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2036 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2037 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2038 if (db_.LookupAttachment(attachment, resource, *it))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2039 {
2987
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2040 if (attachment.GetContentType() == FileContentType_Dicom)
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2041 {
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2042 dicomDiskSize += attachment.GetCompressedSize();
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2043 dicomUncompressedSize += attachment.GetUncompressedSize();
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2044 }
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2045
96089d1aba4d New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
2046 diskSize += attachment.GetCompressedSize();
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2047 uncompressedSize += attachment.GetUncompressedSize();
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2048 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2049 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2050
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2051 if (thisType == ResourceType_Instance)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2052 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2053 countInstances++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2054 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2055 else
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2056 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2057 switch (thisType)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2058 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2059 case ResourceType_Study:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2060 countStudies++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2061 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2062
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2063 case ResourceType_Series:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2064 countSeries++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2065 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2066
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2067 default:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2068 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2069 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2070
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2071 // Tag all the children of this resource as to be explored
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2072 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2073 db_.GetChildrenInternalId(tmp, resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2074 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
2075 it = tmp.begin(); it != tmp.end(); ++it)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2076 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2077 toExplore.push(*it);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2078 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2079 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2080 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
2081
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2082 if (countStudies == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2083 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2084 countStudies = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2085 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2086
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2087 if (countSeries == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2088 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2089 countSeries = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2090 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2091 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2092
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
2093
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2094 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2095 unsigned int threadSleep)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2096 {
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2097 int stableAge;
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2098
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2099 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2100 OrthancConfiguration::ReaderLock lock;
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2101 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60);
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2102 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
2103
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2104 if (stableAge <= 0)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2105 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2106 stableAge = 60;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2107 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2108
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2109 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2110
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2111 while (!that->done_)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2112 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2113 // Check for stable resources each few seconds
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
2114 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep));
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2115
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2116 boost::mutex::scoped_lock lock(that->mutex_);
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2117
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2118 while (!that->unstableResources_.IsEmpty() &&
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2119 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge))
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2120 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2121 // This DICOM resource has not received any new instance for
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2122 // some time. It can be considered as stable.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2123
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2124 UnstableResourcePayload payload;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2125 int64_t id = that->unstableResources_.RemoveOldest(payload);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2126
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2127 // Ensure that the resource is still existing before logging the change
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2128 if (that->db_.IsExistingResource(id))
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2129 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2130 switch (payload.GetResourceType())
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2131 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2132 case ResourceType_Patient:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2133 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2134 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2135
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2136 case ResourceType_Study:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2137 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2138 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2139
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2140 case ResourceType_Series:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2141 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2142 break;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2143
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2144 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2145 throw OrthancException(ErrorCode_InternalError);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2146 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2147
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
2148 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2149 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2150 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2151 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2152
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2153 LOG(INFO) << "Closing the monitor thread for stable resources";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2154 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2155
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2156
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2157 void ServerIndex::MarkAsUnstable(int64_t id,
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2158 Orthanc::ResourceType type,
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2159 const std::string& publicId)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2160 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2161 // WARNING: Before calling this method, "mutex_" must be locked.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2162
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2163 assert(type == Orthanc::ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2164 type == Orthanc::ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2165 type == Orthanc::ResourceType_Series);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2166
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2167 UnstableResourcePayload payload(type, publicId);
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2168 unstableResources_.AddOrMakeMostRecent(id, payload);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2169 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id;
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1177
diff changeset
2170
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2171 LogChange(id, ChangeType_NewChildInstance, type, publicId);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2172 }
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2173
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2174
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2175
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2176 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result,
1728
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2177 ResourceType level,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2178 const DicomTag& tag,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2179 const std::string& value)
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2180 {
1727
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2181 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2182 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2183 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2184 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2185 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID));
1725
a7c05bbfaf6a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
2186
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2187 result.clear();
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2188
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2189 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true);
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2190
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2191 std::vector<DatabaseConstraint> query;
3073
0e9d1731b1b0 refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3061
diff changeset
2192 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier));
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2193
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2194 std::list<std::string> tmp;
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2195
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2196 {
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2197 boost::mutex::scoped_lock lock(mutex_);
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2198 db_.ApplyLookupResources(tmp, NULL, query, level, 0);
3034
54e422fe31ce moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3033
diff changeset
2199 }
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2200
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2201 CopyListToVector(result, tmp);
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2202 }
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2203
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2204
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2205 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment,
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2206 const std::string& publicId)
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2207 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2208 boost::mutex::scoped_lock lock(mutex_);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2209
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2210 Transaction t(*this);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2211
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2212 ResourceType resourceType;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2213 int64_t resourceId;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2214 if (!db_.LookupResource(resourceId, resourceType, publicId))
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2215 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2216 return StoreStatus_Failure; // Inexistent resource
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2217 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2218
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2219 // Remove possible previous attachment
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2220 db_.DeleteAttachment(resourceId, attachment.GetContentType());
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2221
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2222 // Locate the patient of the target resource
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2223 int64_t patientId = resourceId;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2224 for (;;)
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2225 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2226 int64_t parent;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2227 if (db_.LookupParent(parent, patientId))
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2228 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2229 // We have not reached the patient level yet
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2230 patientId = parent;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2231 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2232 else
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2233 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2234 // We have reached the patient level
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2235 break;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2236 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2237 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2238
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2239 // Possibly apply the recycling mechanism while preserving this patient
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2240 assert(db_.GetResourceType(patientId) == ResourceType_Patient);
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2241 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId));
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2242
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2243 db_.AddAttachment(resourceId, attachment);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2244
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2245 if (IsUserContentType(attachment.GetContentType()))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2246 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2247 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2248 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2249
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2250 t.Commit(attachment.GetCompressedSize());
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2251
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2252 return StoreStatus_Success;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2253 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2254
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2255
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2256 void ServerIndex::DeleteAttachment(const std::string& publicId,
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2257 FileContentType type)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2258 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2259 boost::mutex::scoped_lock lock(mutex_);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2260 Transaction t(*this);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2261
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2262 ResourceType rtype;
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2263 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2264 if (!db_.LookupResource(id, rtype, publicId))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2265 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2266 throw OrthancException(ErrorCode_UnknownResource);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2267 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2268
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2269 db_.DeleteAttachment(id, type);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2270
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2271 if (IsUserContentType(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2272 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2273 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2274 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2275
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2276 t.Commit(0);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2277 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2278
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2279
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2280 void ServerIndex::SetGlobalProperty(GlobalProperty property,
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2281 const std::string& value)
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2282 {
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2283 boost::mutex::scoped_lock lock(mutex_);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
2284
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
2285 Transaction transaction(*this);
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2286 db_.SetGlobalProperty(property, value);
3315
8bf33fa68435 Fix missing DB transactions in some write operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3187
diff changeset
2287 transaction.Commit(0);
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2288 }
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2289
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2290
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2291 bool ServerIndex::LookupGlobalProperty(std::string& value,
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2292 GlobalProperty property)
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2293 {
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2294 boost::mutex::scoped_lock lock(mutex_);
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2295 return db_.LookupGlobalProperty(value, property);
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2296 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2297
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2298
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2299 std::string ServerIndex::GetGlobalProperty(GlobalProperty property,
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2300 const std::string& defaultValue)
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2301 {
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2302 std::string value;
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2303
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2304 if (LookupGlobalProperty(value, property))
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2305 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2306 return value;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2307 }
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2308 else
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2309 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2310 return defaultValue;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2311 }
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2312 }
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2313
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2314
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2315 bool ServerIndex::GetMainDicomTags(DicomMap& result,
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2316 const std::string& publicId,
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2317 ResourceType expectedType,
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2318 ResourceType levelOfInterest)
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2319 {
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2320 // Yes, the following test could be shortened, but we wish to make it as clear as possible
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2321 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2322 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2323 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2324 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2325 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance))
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2326 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2327 throw OrthancException(ErrorCode_ParameterOutOfRange);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2328 }
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2329
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2330 result.Clear();
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2331
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2332 boost::mutex::scoped_lock lock(mutex_);
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2333
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2334 // Lookup for the requested resource
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2335 int64_t id;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2336 ResourceType type;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2337 if (!db_.LookupResource(id, type, publicId) ||
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2338 type != expectedType)
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2339 {
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2340 return false;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2341 }
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2342
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2343 if (type == ResourceType_Study)
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2344 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2345 DicomMap tmp;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2346 db_.GetMainDicomTags(tmp, id);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2347
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2348 switch (levelOfInterest)
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2349 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2350 case ResourceType_Patient:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2351 tmp.ExtractPatientInformation(result);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2352 return true;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2353
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2354 case ResourceType_Study:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2355 tmp.ExtractStudyInformation(result);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2356 return true;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2357
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2358 default:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2359 throw OrthancException(ErrorCode_InternalError);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2360 }
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2361 }
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2362 else
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2363 {
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2364 db_.GetMainDicomTags(result, id);
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2365 return true;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2366 }
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2367 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2368
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2369
3006
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2370 bool ServerIndex::GetAllMainDicomTags(DicomMap& result,
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2371 const std::string& instancePublicId)
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2372 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2373 result.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2374
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2375 boost::mutex::scoped_lock lock(mutex_);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2376
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2377 // Lookup for the requested resource
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2378 int64_t instance;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2379 ResourceType type;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2380 if (!db_.LookupResource(instance, type, instancePublicId) ||
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2381 type != ResourceType_Instance)
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2382 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2383 return false;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2384 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2385 else
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2386 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2387 DicomMap tmp;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2388
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2389 db_.GetMainDicomTags(tmp, instance);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2390 result.Merge(tmp);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2391
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2392 int64_t series;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2393 if (!db_.LookupParent(series, instance))
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2394 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2395 throw OrthancException(ErrorCode_InternalError);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2396 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2397
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2398 tmp.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2399 db_.GetMainDicomTags(tmp, series);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2400 result.Merge(tmp);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2401
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2402 int64_t study;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2403 if (!db_.LookupParent(study, series))
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2404 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2405 throw OrthancException(ErrorCode_InternalError);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2406 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2407
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2408 tmp.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2409 db_.GetMainDicomTags(tmp, study);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2410 result.Merge(tmp);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2411
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2412 #ifndef NDEBUG
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2413 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2414 // Sanity test to check that all the main DICOM tags from the
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2415 // patient level are copied at the study level
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2416
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2417 int64_t patient;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2418 if (!db_.LookupParent(patient, study))
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2419 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2420 throw OrthancException(ErrorCode_InternalError);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2421 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2422
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2423 tmp.Clear();
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2424 db_.GetMainDicomTags(tmp, study);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2425
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2426 std::set<DicomTag> patientTags;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2427 tmp.GetTags(patientTags);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2428
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2429 for (std::set<DicomTag>::const_iterator
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2430 it = patientTags.begin(); it != patientTags.end(); ++it)
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2431 {
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2432 assert(result.HasTag(*it));
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2433 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2434 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2435 #endif
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2436
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2437 return true;
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2438 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2439 }
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2440
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2987
diff changeset
2441
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2442 bool ServerIndex::LookupResourceType(ResourceType& type,
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2443 const std::string& publicId)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2444 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2445 boost::mutex::scoped_lock lock(mutex_);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2446
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2447 int64_t id;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2448 return db_.LookupResource(id, type, publicId);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2449 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2450
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2451
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2452 unsigned int ServerIndex::GetDatabaseVersion()
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2453 {
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2454 boost::mutex::scoped_lock lock(mutex_);
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2455 return db_.GetDatabaseVersion();
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2456 }
1750
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2457
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2458
1898
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2459 bool ServerIndex::LookupParent(std::string& target,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2460 const std::string& publicId,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2461 ResourceType parentType)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2462 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2463 boost::mutex::scoped_lock lock(mutex_);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2464
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2465 ResourceType type;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2466 int64_t id;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2467 if (!db_.LookupResource(id, type, publicId))
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2468 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2469 throw OrthancException(ErrorCode_UnknownResource);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2470 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2471
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2472 while (type != parentType)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2473 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2474 int64_t parentId;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2475
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2476 if (type == ResourceType_Patient || // Cannot further go up in hierarchy
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2477 !db_.LookupParent(parentId, id))
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2478 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2479 return false;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2480 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2481
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2482 id = parentId;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2483 type = GetParentResourceType(type);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2484 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2485
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2486 target = db_.GetPublicId(id);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2487 return true;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2488 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2489
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2490
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
2491 void ServerIndex::ReconstructInstance(const ParsedDicomFile& dicom)
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2492 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2493 DicomMap summary;
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
2494 OrthancConfiguration::DefaultExtractDicomSummary(summary, dicom);
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2495
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2496 DicomInstanceHasher hasher(summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2497
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2498 boost::mutex::scoped_lock lock(mutex_);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2499
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2500 try
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2501 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2502 Transaction t(*this);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2503
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2504 int64_t patient = -1, study = -1, series = -1, instance = -1;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2505
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2506 ResourceType dummy;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2507 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2508 !db_.LookupResource(study, dummy, hasher.HashStudy()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2509 !db_.LookupResource(series, dummy, hasher.HashSeries()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2510 !db_.LookupResource(instance, dummy, hasher.HashInstance()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2511 patient == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2512 study == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2513 series == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2514 instance == -1)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2515 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2516 throw OrthancException(ErrorCode_InternalError);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2517 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2518
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2519 db_.ClearMainDicomTags(patient);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2520 db_.ClearMainDicomTags(study);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2521 db_.ClearMainDicomTags(series);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2522 db_.ClearMainDicomTags(instance);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2523
3083
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2524 {
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2525 ResourcesContent content;
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2526 content.AddResource(patient, ResourceType_Patient, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2527 content.AddResource(study, ResourceType_Study, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2528 content.AddResource(series, ResourceType_Series, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2529 content.AddResource(instance, ResourceType_Instance, summary);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2530 db_.SetResourcesContent(content);
683d572424b6 IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3082
diff changeset
2531 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2532
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2533 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2534 std::string s;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2535 if (dicom.LookupTransferSyntax(s))
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2536 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2537 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2538 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2539 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2540
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2541 const DicomValue* value;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2542 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2543 !value->IsNull() &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2544 !value->IsBinary())
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2545 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2546 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent());
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2547 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2548
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2549 t.Commit(0); // No change in the DB size
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2550 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2551 catch (OrthancException& e)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2552 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2553 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2554 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2555 }
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2556
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2557
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2558 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target,
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2559 const DatabaseLookup& source,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2560 ResourceType queryLevel) const
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2561 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2562 assert(mainDicomTagsRegistry_.get() != NULL);
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2563
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2564 target.clear();
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2565 target.reserve(source.GetConstraintsCount());
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2566
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2567 for (size_t i = 0; i < source.GetConstraintsCount(); i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2568 {
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2569 ResourceType level;
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2570 DicomTagType type;
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2571
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2572 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag());
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2573
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2574 if (type == DicomTagType_Identifier ||
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2575 type == DicomTagType_Main)
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2576 {
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2577 // Use the fact that patient-level tags are copied at the study level
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2578 if (level == ResourceType_Patient &&
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2579 queryLevel != ResourceType_Patient)
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2580 {
3031
18a2d196414b simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3030
diff changeset
2581 level = ResourceType_Study;
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2582 }
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2583
3073
0e9d1731b1b0 refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3061
diff changeset
2584 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type));
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2585 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2586 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2587 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2588
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2589
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2590 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId,
3036
8fd203510d8b moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3034
diff changeset
2591 std::vector<std::string>* instancesId,
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2592 const DatabaseLookup& lookup,
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2593 ResourceType queryLevel,
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2594 size_t limit)
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2595 {
3029
ea653ec47f31 new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
diff changeset
2596 std::vector<DatabaseConstraint> normalized;
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2597 NormalizeLookup(normalized, lookup, queryLevel);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2598
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2599 std::list<std::string> resourcesList, instancesList;
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2600
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2601 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2602 boost::mutex::scoped_lock lock(mutex_);
3075
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2603
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2604 if (instancesId == NULL)
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2605 {
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2606 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit);
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2607 }
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2608 else
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2609 {
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2610 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit);
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2611 }
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2612 }
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2613
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2614 CopyListToVector(resourcesId, resourcesList);
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2615
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2616 if (instancesId != NULL)
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2617 {
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3073
diff changeset
2618 CopyListToVector(*instancesId, instancesList);
3027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
2619 }
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3020
diff changeset
2620 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2621 }