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annotate Applications/CMakeLists.txt @ 130:4f3945a2b725

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 22 Mar 2018 17:32:05 +0100
parents 7a3f4d580625
children a0f9a3df1110
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1 cmake_minimum_required(VERSION 2.8)
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2 project(OrthancWSIApplications)
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3
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4
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5 #####################################################################
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6 ## Parameters of the build
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7 #####################################################################
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8
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9 # Generic parameters
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10 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)")
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11 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages")
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12 SET(ENABLE_PROFILING OFF CACHE BOOL "Whether to enable the generation of profiling information with gprof")
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13
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14 # Optional components
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15 SET(ENABLE_SSL ON CACHE BOOL "Include support for SSL")
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16 SET(USE_DCMTK_361 OFF CACHE BOOL "Use forthcoming DCMTK version 3.6.1 in static builds (instead of 3.6.0)")
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17
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18 if (CMAKE_SYSTEM_NAME STREQUAL "Linux")
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19 set(TMP ON)
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20 else()
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21 set(TMP OFF)
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22 endif()
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23
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24
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25 # Advanced parameters to fine-tune linking against system libraries
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26 SET(USE_SYSTEM_BOOST ON CACHE BOOL "Use the system version of Boost")
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27 SET(USE_SYSTEM_CURL ON CACHE BOOL "Use the system version of LibCurl")
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28 SET(USE_SYSTEM_DCMTK ON CACHE BOOL "Use the system version of DCMTK")
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29 SET(USE_SYSTEM_JSONCPP ON CACHE BOOL "Use the system version of JsonCpp")
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30 SET(USE_SYSTEM_LIBICONV ON CACHE BOOL "Use the system version of libiconv")
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31 SET(USE_SYSTEM_LIBJPEG ON CACHE BOOL "Use the system version of libjpeg")
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32 SET(USE_SYSTEM_LIBPNG ON CACHE BOOL "Use the system version of libpng")
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33 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff")
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34 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg")
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35 SET(USE_SYSTEM_OPENSSL ON CACHE BOOL "Use the system version of OpenSSL")
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36 SET(USE_SYSTEM_ORTHANC_SDK ON CACHE BOOL "Use the system version of the Orthanc plugin SDK")
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37 SET(USE_SYSTEM_ZLIB ON CACHE BOOL "Use the system version of ZLib")
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38 set(USE_SYSTEM_UUID ON CACHE BOOL "Use the system version of the uuid library from e2fsprogs")
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40 SET(DCMTK_DICTIONARY_DIR "" CACHE PATH "Directory containing the DCMTK dictionaries \"dicom.dic\" and \"private.dic\" (only when using system version of DCMTK)")
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41
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42 SET(USE_BOOST_ICONV ON CACHE BOOL "Use iconv instead of wconv (Windows only)")
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43 mark_as_advanced(USE_BOOST_ICONV)
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46 #####################################################################
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47 ## Configure mandatory third-party components
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48 #####################################################################
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49
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50 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..)
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51 SET(ORTHANC_ROOT ${ORTHANC_WSI_DIR}/Resources/Orthanc)
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52 SET(USE_OPENJPEG_JP2 ON)
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53 SET(ENABLE_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff
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54 SET(ENABLE_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS
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55 SET(ENABLE_DCMTK_NETWORK OFF) # Disable DCMTK's support for DICOM networking
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56 SET(ENABLE_LOCALE ON) # Enable support for locales (notably in Boost)
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57 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds
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58 SET(USE_DCMTK_361_PRIVATE_DIC OFF) # No need for private tags
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60 include(CheckFunctionExists)
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61 include(CheckIncludeFile)
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62 include(CheckIncludeFiles)
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63 include(CheckIncludeFileCXX)
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64 include(CheckLibraryExists)
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65 include(CheckStructHasMember)
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66 include(FindPythonInterp)
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67 include(FindPkgConfig)
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68 include(CheckSymbolExists)
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69
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70 include(${ORTHANC_ROOT}/Resources/CMake/Compiler.cmake)
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71 include(${ORTHANC_ROOT}/Resources/CMake/AutoGeneratedCode.cmake)
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72 include(${ORTHANC_ROOT}/Resources/CMake/DownloadPackage.cmake)
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73 include(${ORTHANC_ROOT}/Resources/CMake/VisualStudioPrecompiledHeaders.cmake)
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74
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75 # Third-party components shipped with Orthanc
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76 include(${ORTHANC_ROOT}/Resources/CMake/DcmtkConfiguration.cmake)
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77 include(${ORTHANC_ROOT}/Resources/CMake/JsonCppConfiguration.cmake)
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78 include(${ORTHANC_ROOT}/Resources/CMake/LibCurlConfiguration.cmake)
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79 include(${ORTHANC_ROOT}/Resources/CMake/LibIconvConfiguration.cmake)
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80 include(${ORTHANC_ROOT}/Resources/CMake/LibJpegConfiguration.cmake)
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81 include(${ORTHANC_ROOT}/Resources/CMake/LibPngConfiguration.cmake)
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82 include(${ORTHANC_ROOT}/Resources/CMake/UuidConfiguration.cmake)
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83 include(${ORTHANC_ROOT}/Resources/CMake/ZlibConfiguration.cmake)
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84
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85 # Include components specific to WSI
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86 include(${ORTHANC_WSI_DIR}/Resources/CMake/Version.cmake)
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87 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake)
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88 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake)
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89 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake)
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90
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91 add_definitions(
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92 -DHAS_ORTHANC_EXCEPTION=1
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93 -DORTHANC_BUILD_UNIT_TESTS=0 # For FromDcmtkBridge
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94 -DORTHANC_DEFAULT_DICOM_ENCODING=Encoding_Latin1
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95 -DORTHANC_ENABLE_BASE64=1
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96 -DORTHANC_ENABLE_CURL=1
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97 -DORTHANC_ENABLE_DCMTK=1
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98 -DORTHANC_ENABLE_DCMTK_JPEG=0 # Disable DCMTK's support for JPEG
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99 -DORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS=0 # Disable DCMTK's support for JPEG-LS
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100 -DORTHANC_ENABLE_JPEG=1
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101 -DORTHANC_ENABLE_LOCALE=1
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102 -DORTHANC_ENABLE_LOGGING=1
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103 -DORTHANC_ENABLE_LOGGING_STDIO=0
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104 -DORTHANC_ENABLE_LOGGING_PLUGIN=0
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105 -DORTHANC_ENABLE_LUA=0 # For FromDcmtkBridge
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106 -DORTHANC_ENABLE_MD5=0
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107 -DORTHANC_ENABLE_PKCS11=0
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108 -DORTHANC_ENABLE_PNG=1
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109 -DORTHANC_ENABLE_PUGIXML=0
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110 -DORTHANC_MAXIMUM_TAG_LENGTH=256
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111 -DORTHANC_SANDBOXED=0
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112 )
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113
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114
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115 #####################################################################
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116 ## Find the Orthanc SDK
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117 #####################################################################
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118
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119 if (STATIC_BUILD OR NOT USE_SYSTEM_ORTHANC_SDK)
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120 include_directories(${ORTHANC_ROOT}/Sdk-1.0.0)
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121 else ()
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122 CHECK_INCLUDE_FILE_CXX(orthanc/OrthancCPlugin.h HAVE_ORTHANC_H)
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123 if (NOT HAVE_ORTHANC_H)
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124 message(FATAL_ERROR "Please install the headers of the Orthanc plugins SDK")
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125 endif()
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126 endif()
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127
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128
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129 #####################################################################
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130 ## Configure optional third-party components
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131 #####################################################################
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132
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133 if (ENABLE_SSL)
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134 set(ENABLE_PKCS11 OFF)
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135 add_definitions(-DORTHANC_ENABLE_SSL=1)
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136 include(${ORTHANC_ROOT}/Resources/CMake/OpenSslConfiguration.cmake)
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137 else()
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138 add_definitions(-DORTHANC_ENABLE_SSL=0)
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139 endif()
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140
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141
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142 #####################################################################
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143 ## Create the list of the source files that depend upon the
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144 ## precompiled headers
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145 #####################################################################
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146
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147 set(ORTHANC_WSI_SOURCES
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148 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp
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149 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp
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150 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp
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151 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp
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152 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp
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153 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp
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154 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp
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155 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp
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156 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp
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157 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp
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158 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp
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159 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp
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160 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp
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161 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp
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162 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp
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163 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp
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164 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp
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165 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp
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166 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp
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167 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp
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168 ${ORTHANC_WSI_DIR}/Framework/Targets/FolderTarget.cpp
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169 ${ORTHANC_WSI_DIR}/Framework/Targets/OrthancTarget.cpp
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170 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp
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171 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp
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172 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp
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173 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp
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174 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp
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175 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp
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176 )
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177
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178 set(ORTHANC_CORE_SOURCES
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179 ${ORTHANC_ROOT}/Core/ChunkedBuffer.cpp
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180 ${ORTHANC_ROOT}/Core/DicomFormat/DicomArray.cpp
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181 ${ORTHANC_ROOT}/Core/DicomFormat/DicomMap.cpp
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182 ${ORTHANC_ROOT}/Core/DicomFormat/DicomTag.cpp
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183 ${ORTHANC_ROOT}/Core/DicomFormat/DicomValue.cpp
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184 ${ORTHANC_ROOT}/Core/DicomParsing/FromDcmtkBridge.cpp
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185 ${ORTHANC_ROOT}/Core/DicomParsing/ToDcmtkBridge.cpp
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186 ${ORTHANC_ROOT}/Core/Enumerations.cpp
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187 ${ORTHANC_ROOT}/Core/HttpClient.cpp
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188 ${ORTHANC_ROOT}/Core/Images/IImageWriter.cpp
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189 ${ORTHANC_ROOT}/Core/Images/Image.cpp
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190 ${ORTHANC_ROOT}/Core/Images/ImageAccessor.cpp
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191 ${ORTHANC_ROOT}/Core/Images/ImageBuffer.cpp
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192 ${ORTHANC_ROOT}/Core/Images/ImageProcessing.cpp
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193 ${ORTHANC_ROOT}/Core/Images/JpegErrorManager.cpp
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194 ${ORTHANC_ROOT}/Core/Images/JpegReader.cpp
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195 ${ORTHANC_ROOT}/Core/Images/JpegWriter.cpp
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196 ${ORTHANC_ROOT}/Core/Images/PngReader.cpp
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197 ${ORTHANC_ROOT}/Core/Images/PngWriter.cpp
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198 ${ORTHANC_ROOT}/Core/Logging.cpp
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199 ${ORTHANC_ROOT}/Core/MultiThreading/BagOfTasksProcessor.cpp
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200 ${ORTHANC_ROOT}/Core/MultiThreading/SharedMessageQueue.cpp
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201 ${ORTHANC_ROOT}/Core/SharedLibrary.cpp
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202 ${ORTHANC_ROOT}/Core/SystemToolbox.cpp
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203 ${ORTHANC_ROOT}/Core/TemporaryFile.cpp
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204 ${ORTHANC_ROOT}/Core/Toolbox.cpp
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205 ${ORTHANC_ROOT}/Core/WebServiceParameters.cpp
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206
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207 ${ORTHANC_ROOT}/Plugins/Samples/Common/OrthancPluginCppWrapper.cpp
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208 ${ORTHANC_ROOT}/Plugins/Samples/Common/DicomDatasetReader.cpp
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209 ${ORTHANC_ROOT}/Plugins/Samples/Common/DicomPath.cpp
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210 ${ORTHANC_ROOT}/Plugins/Samples/Common/DicomTag.cpp
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211 ${ORTHANC_ROOT}/Plugins/Samples/Common/FullOrthancDataset.cpp
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212 ${ORTHANC_ROOT}/Plugins/Samples/Common/IOrthancConnection.cpp
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213 ${ORTHANC_ROOT}/Plugins/Samples/Common/OrthancHttpConnection.cpp
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214 ${ORTHANC_ROOT}/Plugins/Samples/Common/OrthancPluginConnection.cpp
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215 ${ORTHANC_ROOT}/Plugins/Samples/Common/SimplifiedOrthancDataset.cpp
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216
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217 ${ORTHANC_ROOT}/Resources/ThirdParty/base64/base64.cpp
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218 )
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219
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220 EmbedResources(
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221 ${DCMTK_DICTIONARIES}
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222 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json
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223 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json
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224 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc
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225 )
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226
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227
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228 #####################################################################
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229 ## Setup precompiled headers for Microsoft Visual Studio
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230 #####################################################################
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231
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232 if (MSVC)
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233 add_definitions(-DORTHANC_USE_PRECOMPILED_HEADERS=1)
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234
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235 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
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236 "PrecompiledHeaders.h" "${ORTHANC_WSI_DIR}/Resources/Orthanc/Core/PrecompiledHeaders.cpp"
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237 ORTHANC_CORE_SOURCES ORTHANC_CORE_PCH)
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238
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239 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
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240 "PrecompiledHeadersWSI.h" "${ORTHANC_WSI_DIR}/Framework/PrecompiledHeadersWSI.cpp"
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241 ORTHANC_WSI_SOURCES ORTHANC_WSI_PCH)
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242
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243 source_group(ThirdParty\\OrthancCore FILES ${ORTHANC_CORE_SOURCES})
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244 endif()
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245
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246
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247 #####################################################################
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248 ## Create the static library containing the framework
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249 #####################################################################
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250
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251 add_library(OrthancWSIFramework STATIC
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252 ${ORTHANC_CORE_PCH}
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253 ${ORTHANC_CORE_SOURCES}
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254 ${ORTHANC_WSI_PCH}
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255 ${ORTHANC_WSI_SOURCES}
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256 ${AUTOGENERATED_SOURCES}
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257
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258 # Mandatory components
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259 ${BOOST_SOURCES}
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260 ${CURL_SOURCES}
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261 ${DCMTK_SOURCES}
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262 ${JSONCPP_SOURCES}
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263 ${LIBICONV_SOURCES}
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264 ${LIBJPEG_SOURCES}
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265 ${LIBPNG_SOURCES}
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266 ${LIBTIFF_SOURCES}
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267 ${OPENJPEG_SOURCES}
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268 ${UUID_SOURCES}
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269 ${ZLIB_SOURCES}
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270
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271 # Optional components
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272 ${OPENSSL_SOURCES}
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273 )
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274
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275
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276 #####################################################################
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277 ## Build the WSI DICOM-izer
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278 #####################################################################
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279
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280 # Create the Windows resources, if need be
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281 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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282 execute_process(
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283 COMMAND
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284 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py
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285 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging"
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286 ERROR_VARIABLE Failure
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287 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc
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288 )
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289
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290 if (Failure)
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291 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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292 endif()
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293
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294 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc)
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295 endif()
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296
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297
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298 add_executable(OrthancWSIDicomizer
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299 Dicomizer.cpp
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300 ApplicationToolbox.cpp
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301 ${DICOMIZER_RESOURCES}
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302 )
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303
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304 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES})
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305
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306 install(
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307 TARGETS OrthancWSIDicomizer
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308 RUNTIME DESTINATION bin
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309 )
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310
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311
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312 #####################################################################
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313 ## Build the DICOM-to-TIFF conversion tool
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314 #####################################################################
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315
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316 # Create the Windows resources, if need be
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317 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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318 execute_process(
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319 COMMAND
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320 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py
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321 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging"
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322 ERROR_VARIABLE Failure
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323 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc
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324 )
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325
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326 if (Failure)
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327 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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328 endif()
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329
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330 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc)
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331 endif()
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332
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333
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334 add_executable(OrthancWSIDicomToTiff
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335 DicomToTiff.cpp
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336 ApplicationToolbox.cpp
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337 ${DICOM_TO_TIFF_RESOURCES}
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338 )
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339
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340 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES})
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341
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342 install(
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343 TARGETS OrthancWSIDicomToTiff
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344 RUNTIME DESTINATION bin
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345 )
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346
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347
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348 #####################################################################
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349 ## Generate the documentation if Doxygen is present
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350 #####################################################################
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351
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352 find_package(Doxygen)
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353 if (DOXYGEN_FOUND)
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354 configure_file(
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355 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen
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356 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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357 @ONLY)
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358
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359 add_custom_target(doc
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360 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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361 COMMENT "Generating documentation with Doxygen" VERBATIM
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362 )
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363 else()
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364 message("Doxygen not found. The documentation will not be built.")
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365 endif()