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annotate Applications/CMakeLists.txt @ 40:371243c270cc

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fix
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 09 Nov 2016 14:17:55 +0100
parents 2e5db9b72a7b
children 9621fd6f17c9
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1 cmake_minimum_required(VERSION 2.8)
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2 project(OrthancWSIApplications)
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3
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4
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5 #####################################################################
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6 ## Parameters of the build
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7 #####################################################################
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8
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9 # Generic parameters
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10 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)")
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11 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages")
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12
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13 # Optional components
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14 SET(ENABLE_SSL OFF CACHE BOOL "Include support for SSL")
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15 SET(USE_DCMTK_361 OFF CACHE BOOL "Use forthcoming DCMTK version 3.6.1 in static builds (instead of 3.6.0)")
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16
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17 if (CMAKE_SYSTEM_NAME STREQUAL "Linux")
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18 set(TMP ON)
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19 else()
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20 set(TMP OFF)
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21 endif()
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22
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23
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24 # Advanced parameters to fine-tune linking against system libraries
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25 SET(USE_SYSTEM_BOOST ON CACHE BOOL "Use the system version of Boost")
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26 SET(USE_SYSTEM_CURL ON CACHE BOOL "Use the system version of LibCurl")
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27 SET(USE_SYSTEM_DCMTK ON CACHE BOOL "Use the system version of DCMTK")
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28 SET(USE_SYSTEM_JSONCPP ON CACHE BOOL "Use the system version of JsonCpp")
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29 SET(USE_SYSTEM_LIBJPEG ON CACHE BOOL "Use the system version of libjpeg")
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30 SET(USE_SYSTEM_LIBPNG ON CACHE BOOL "Use the system version of libpng")
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31 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff")
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32 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg")
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33 SET(USE_SYSTEM_OPENSSL ON CACHE BOOL "Use the system version of OpenSSL")
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34 SET(USE_SYSTEM_ZLIB ON CACHE BOOL "Use the system version of ZLib")
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35
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36 SET(DCMTK_DICTIONARY_DIR "" CACHE PATH "Directory containing the DCMTK dictionaries \"dicom.dic\" and \"private.dic\" (only when using system version of DCMTK)")
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37
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38
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39 #####################################################################
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40 ## Configure mandatory third-party components
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41 #####################################################################
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42
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43 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..)
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44 SET(ORTHANC_ROOT ${ORTHANC_WSI_DIR}/Framework/Orthanc)
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45 SET(USE_OPENJPEG_JP2 ON)
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46 SET(ENABLE_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff
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47 SET(ENABLE_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS
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48 SET(ENABLE_DCMTK_NETWORK OFF) # Disable DCMTK's support for DICOM networking
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49 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds
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50
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51 include(CheckIncludeFiles)
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52 include(CheckIncludeFileCXX)
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53 include(CheckLibraryExists)
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54 include(FindPythonInterp)
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55 include(FindPkgConfig)
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56 include(CheckSymbolExists)
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57
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58 include(${ORTHANC_ROOT}/Resources/CMake/Compiler.cmake)
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59 include(${ORTHANC_ROOT}/Resources/CMake/AutoGeneratedCode.cmake)
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60 include(${ORTHANC_ROOT}/Resources/CMake/DownloadPackage.cmake)
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61 include(${ORTHANC_ROOT}/Resources/CMake/VisualStudioPrecompiledHeaders.cmake)
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62
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63 # Third-party components shipped with Orthanc
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64 include(${ORTHANC_ROOT}/Resources/CMake/DcmtkConfiguration.cmake)
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65 include(${ORTHANC_ROOT}/Resources/CMake/JsonCppConfiguration.cmake)
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66 include(${ORTHANC_ROOT}/Resources/CMake/LibCurlConfiguration.cmake)
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67 include(${ORTHANC_ROOT}/Resources/CMake/LibJpegConfiguration.cmake)
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68 include(${ORTHANC_ROOT}/Resources/CMake/LibPngConfiguration.cmake)
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69 include(${ORTHANC_ROOT}/Resources/CMake/ZlibConfiguration.cmake)
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70
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71 # Include components specific to WSI
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72 include(${ORTHANC_WSI_DIR}/Resources/CMake/Version.cmake)
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73 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake)
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74 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake)
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75 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake)
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76
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77 add_definitions(
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78 -DORTHANC_ENABLE_BASE64=1
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79 -DORTHANC_ENABLE_CURL=1
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80 -DORTHANC_ENABLE_DCMTK=1
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81 -DORTHANC_ENABLE_LOGGING=1
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82 -DORTHANC_ENABLE_MD5=0
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83 -DORTHANC_ENABLE_JPEG=0 # Disable DCMTK's support for JPEG
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84 -DORTHANC_ENABLE_PKCS11=0
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85 -DORTHANC_ENABLE_PLUGINS=1 # To enable class Orthanc::SharedLibrary
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86 -DORTHANC_ENABLE_PUGIXML=0
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87 )
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88
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89
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90 #####################################################################
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91 ## Configure optional third-party components
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92 #####################################################################
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93
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94 if (ENABLE_SSL)
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95 set(ENABLE_PKCS11 OFF)
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96 add_definitions(-DORTHANC_ENABLE_SSL=1)
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97 include(${ORTHANC_ROOT}/Resources/CMake/OpenSslConfiguration.cmake)
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98 else()
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99 add_definitions(-DORTHANC_ENABLE_SSL=0)
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100 endif()
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101
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102
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103 #####################################################################
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104 ## Create the list of the source files that depend upon the
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105 ## precompiled headers
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106 #####################################################################
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107
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108 set(ORTHANC_WSI_SOURCES
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109 #${ORTHANC_WSI_DIR}/Framework/Messaging/PluginOrthancConnection.cpp
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110 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp
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111 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp
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112 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp
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113 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp
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114 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp
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115 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp
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116 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp
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117 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp
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118 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp
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119 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp
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120 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp
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121 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp
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122 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp
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123 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp
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124 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp
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125 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp
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126 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp
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127 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp
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128 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp
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129 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp
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130 ${ORTHANC_WSI_DIR}/Framework/Messaging/CurlOrthancConnection.cpp
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131 ${ORTHANC_WSI_DIR}/Framework/Messaging/FolderTarget.cpp
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132 ${ORTHANC_WSI_DIR}/Framework/Messaging/IOrthancConnection.cpp
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133 ${ORTHANC_WSI_DIR}/Framework/Messaging/OrthancConnectionBase.cpp
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134 ${ORTHANC_WSI_DIR}/Framework/Messaging/OrthancTarget.cpp
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135 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp
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136 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp
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137 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp
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138 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp
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139 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp
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140 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp
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141 )
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142
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143 set(ORTHANC_CORE_SOURCES
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144 ${ORTHANC_ROOT}/Core/ChunkedBuffer.cpp
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145 ${ORTHANC_ROOT}/Core/DicomFormat/DicomArray.cpp
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146 ${ORTHANC_ROOT}/Core/DicomFormat/DicomMap.cpp
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147 ${ORTHANC_ROOT}/Core/DicomFormat/DicomTag.cpp
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148 ${ORTHANC_ROOT}/Core/DicomFormat/DicomValue.cpp
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149 ${ORTHANC_ROOT}/Core/Enumerations.cpp
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150 ${ORTHANC_ROOT}/Core/HttpClient.cpp
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151 ${ORTHANC_ROOT}/Core/Images/IImageWriter.cpp
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152 ${ORTHANC_ROOT}/Core/Images/Image.cpp
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153 ${ORTHANC_ROOT}/Core/Images/ImageAccessor.cpp
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154 ${ORTHANC_ROOT}/Core/Images/ImageBuffer.cpp
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155 ${ORTHANC_ROOT}/Core/Images/ImageProcessing.cpp
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156 ${ORTHANC_ROOT}/Core/Images/JpegErrorManager.cpp
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157 ${ORTHANC_ROOT}/Core/Images/JpegReader.cpp
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158 ${ORTHANC_ROOT}/Core/Images/JpegWriter.cpp
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159 ${ORTHANC_ROOT}/Core/Images/PngReader.cpp
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160 ${ORTHANC_ROOT}/Core/Images/PngWriter.cpp
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161 ${ORTHANC_ROOT}/Core/Logging.cpp
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162 ${ORTHANC_ROOT}/Core/MultiThreading/BagOfTasksProcessor.cpp
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163 ${ORTHANC_ROOT}/Core/MultiThreading/SharedMessageQueue.cpp
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164 ${ORTHANC_ROOT}/Core/Toolbox.cpp
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165 ${ORTHANC_ROOT}/Core/Uuid.cpp
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166 ${ORTHANC_ROOT}/Core/WebServiceParameters.cpp
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167 ${ORTHANC_ROOT}/OrthancServer/FromDcmtkBridge.cpp
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168 ${ORTHANC_ROOT}/OrthancServer/ServerEnumerations.cpp
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169 ${ORTHANC_ROOT}/OrthancServer/ToDcmtkBridge.cpp
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170 ${ORTHANC_ROOT}/Plugins/Engine/SharedLibrary.cpp
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171 ${ORTHANC_ROOT}/Resources/ThirdParty/base64/base64.cpp
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172 )
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173
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174 EmbedResources(
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175 ${DCMTK_DICTIONARIES}
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176 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json
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177 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json
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178 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc
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179 )
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180
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181
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182 #####################################################################
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183 ## Setup precompiled headers for Microsoft Visual Studio
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184 #####################################################################
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185
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186 if (MSVC)
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187 add_definitions(-DORTHANC_USE_PRECOMPILED_HEADERS=1)
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188
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189 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
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190 "PrecompiledHeaders.h" "${ORTHANC_WSI_DIR}/Framework/Orthanc/Core/PrecompiledHeaders.cpp" ORTHANC_CORE_SOURCES)
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191
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192 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
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193 "PrecompiledHeadersWSI.h" "${ORTHANC_WSI_DIR}/Framework/PrecompiledHeadersWSI.cpp" ORTHANC_WSI_SOURCES)
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194
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195 source_group(ThirdParty\\OrthancCore FILES ${ORTHANC_CORE_SOURCES})
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196 endif()
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197
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198
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199 #####################################################################
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200 ## Create the static library containing the framework
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201 #####################################################################
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202
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203 add_library(OrthancWSIFramework STATIC
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204 ${ORTHANC_CORE_SOURCES}
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205 ${ORTHANC_WSI_SOURCES}
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206 ${AUTOGENERATED_SOURCES}
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207
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208 # Mandatory components
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209 ${BOOST_SOURCES}
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210 ${CURL_SOURCES}
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211 ${DCMTK_SOURCES}
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212 ${JSONCPP_SOURCES}
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213 ${LIBJPEG_SOURCES}
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214 ${LIBPNG_SOURCES}
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215 ${LIBTIFF_SOURCES}
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216 ${OPENJPEG_SOURCES}
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217 ${ZLIB_SOURCES}
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218
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219 # Optional components
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220 ${OPENSSL_SOURCES}
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221 )
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222
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223
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224 #####################################################################
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225 ## Build the WSI DICOM-izer
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226 #####################################################################
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227
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228 # Create the Windows resources, if need be
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229 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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230 execute_process(
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231 COMMAND
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232 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py
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233 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging"
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234 ERROR_VARIABLE Failure
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235 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc
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236 )
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237
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238 if (Failure)
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239 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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240 endif()
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241
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242 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc)
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243 endif()
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244
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245
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246 add_executable(OrthancWSIDicomizer
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247 Dicomizer.cpp
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248 ApplicationToolbox.cpp
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249 ${DICOMIZER_RESOURCES}
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250 )
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251
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252 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES})
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253
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254 install(
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255 TARGETS OrthancWSIDicomizer
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256 RUNTIME DESTINATION bin
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257 )
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258
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259
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260 #####################################################################
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261 ## Build the DICOM-to-TIFF conversion tool
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262 #####################################################################
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263
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264 # Create the Windows resources, if need be
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265 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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266 execute_process(
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267 COMMAND
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268 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py
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269 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging"
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270 ERROR_VARIABLE Failure
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271 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc
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272 )
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273
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274 if (Failure)
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275 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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276 endif()
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277
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278 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc)
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279 endif()
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280
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281
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282 add_executable(OrthancWSIDicomToTiff
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283 DicomToTiff.cpp
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284 ApplicationToolbox.cpp
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285 ${DICOM_TO_TIFF_RESOURCES}
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286 )
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287
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288 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES})
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289
6
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290 install(
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291 TARGETS OrthancWSIDicomToTiff
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292 RUNTIME DESTINATION bin
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293 )
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294
0
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295
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296 #####################################################################
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297 ## Generate the documentation if Doxygen is present
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298 #####################################################################
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299
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300 find_package(Doxygen)
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301 if (DOXYGEN_FOUND)
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302 configure_file(
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303 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen
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304 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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305 @ONLY)
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306
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307 add_custom_target(doc
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308 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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309 COMMENT "Generating documentation with Doxygen" VERBATIM
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310 )
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311 else()
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312 message("Doxygen not found. The documentation will not be built.")
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313 endif()