Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 21:2a29bcff60a7
tests of image decoding
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 22 Jun 2015 14:14:37 +0200 |
parents | 16c37933384d |
children | 8f4b70c89467 |
rev | line source |
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3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
3 # Department, University Hospital of Liege, Belgium | |
4 # | |
5 # This program is free software: you can redistribute it and/or | |
6 # modify it under the terms of the GNU General Public License as | |
7 # published by the Free Software Foundation, either version 3 of the | |
8 # License, or (at your option) any later version. | |
9 # | |
10 # This program is distributed in the hope that it will be useful, but | |
11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
13 # General Public License for more details. | |
14 # | |
15 # You should have received a copy of the GNU General Public License | |
16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
17 | |
18 | |
14 | 19 import tempfile |
3 | 20 import unittest |
21 | |
11 | 22 from PIL import ImageChops |
3 | 23 from Toolbox import * |
13 | 24 from xml.dom import minidom |
3 | 25 |
26 _LOCAL = None | |
27 _REMOTE = None | |
28 | |
29 | |
30 def SetOrthancParameters(local, remote): | |
31 global _LOCAL, _REMOTE | |
32 _LOCAL = local | |
33 _REMOTE = remote | |
34 | |
35 | |
14 | 36 def ExtractDicomTags(rawDicom, tags): |
37 with tempfile.NamedTemporaryFile(delete = True) as f: | |
38 f.write(rawDicom) | |
39 f.flush() | |
40 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
41 | |
42 result = [] | |
43 for tag in tags: | |
44 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
45 if match == None: | |
46 result.append('') | |
47 else: | |
48 result.append(match.group(1)) | |
49 | |
50 return result | |
51 | |
52 | |
15 | 53 def InstallLuaScript(path): |
54 with open(GetDatabasePath(path), 'r') as f: | |
55 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
56 | |
57 | |
58 def UninstallLuaCallbacks(): | |
59 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
60 | |
61 | |
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62 def CompareLists(a, b): |
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63 if len(a) != len(b): |
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64 return False |
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65 |
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66 for i in range(len(a)): |
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67 d = a[i] - b[i] |
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68 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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69 return False |
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70 |
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71 return True |
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72 |
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73 |
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74 |
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75 |
15 | 76 |
3 | 77 class Orthanc(unittest.TestCase): |
78 def setUp(self): | |
79 DropOrthanc(_LOCAL) | |
80 DropOrthanc(_REMOTE) | |
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81 #print "In test", self._testMethodName |
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82 |
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83 def AssertSameImages(self, truth, url): |
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84 im = GetImage(_REMOTE, url) |
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85 self.assertTrue(CompareLists(truth, im.getdata())) |
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86 |
3 | 87 |
88 def test_system(self): | |
89 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
90 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
91 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
92 | |
93 def test_upload(self): | |
94 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
95 self.assertEqual('Success', u['Status']) | |
96 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
97 self.assertEqual('AlreadyStored', u['Status']) | |
98 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
99 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
100 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
101 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
102 | |
103 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
104 self.assertEqual('20070101', i['StudyDate']) | |
105 | |
106 | |
5 | 107 def test_upload_2(self): |
3 | 108 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
109 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
110 self.assertEqual(i, instance['ID']) | |
111 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
112 instance['MainDicomTags']['SOPInstanceUID']) | |
113 | |
114 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
115 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
116 series['MainDicomTags']['SeriesInstanceUID']) | |
117 | |
118 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
119 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
120 study['MainDicomTags']['StudyInstanceUID']) | |
121 | |
122 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
123 self.assertEqual('ozp00SjY2xG', | |
124 patient['MainDicomTags']['PatientID']) | |
125 | |
126 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
127 self.assertEqual(2472, len(dicom)) | |
128 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
129 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
130 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
131 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
132 | |
133 | |
5 | 134 def test_images(self): |
135 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
136 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 137 |
5 | 138 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
139 self.assertEqual("L", im.mode) | |
140 self.assertEqual(512, im.size[0]) | |
141 self.assertEqual(358, im.size[1]) | |
142 | |
143 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
144 self.assertEqual("L", im.mode) | |
145 self.assertEqual(512, im.size[0]) | |
146 self.assertEqual(358, im.size[1]) | |
147 | |
148 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
149 self.assertEqual(512, im.size[0]) | |
150 self.assertEqual(358, im.size[1]) | |
151 | |
152 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
153 self.assertEqual("L", im.mode) | |
154 self.assertEqual(512, im.size[0]) | |
155 self.assertEqual(358, im.size[1]) | |
156 | |
157 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
158 self.assertEqual("L", im.mode) | |
159 self.assertEqual(512, im.size[0]) | |
160 self.assertEqual(358, im.size[1]) | |
161 | |
162 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
163 self.assertEqual(512, im.size[0]) | |
164 self.assertEqual(358, im.size[1]) | |
165 | |
6 | 166 |
167 def test_hierarchy(self): | |
168 UploadFolder(_REMOTE, 'Brainix/Epi') | |
169 UploadFolder(_REMOTE, 'Brainix/Flair') | |
170 UploadFolder(_REMOTE, 'Knee/T1') | |
171 UploadFolder(_REMOTE, 'Knee/T2') | |
172 | |
173 p = DoGet(_REMOTE, '/patients') | |
174 s = DoGet(_REMOTE, '/studies') | |
175 t = DoGet(_REMOTE, '/series') | |
176 self.assertEqual(2, len(p)) | |
177 self.assertEqual(2, len(s)) | |
178 self.assertEqual(4, len(t)) | |
179 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
180 | |
181 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
182 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
183 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
184 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
185 | |
186 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
187 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
188 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
189 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
190 | |
191 self.assertTrue(brainixPatient in p) | |
192 self.assertTrue(kneePatient in p) | |
193 self.assertTrue(brainixStudy in s) | |
194 self.assertTrue(kneeStudy in s) | |
195 self.assertTrue(brainixEpi in t) | |
196 self.assertTrue(brainixFlair in t) | |
197 self.assertTrue(kneeT1 in t) | |
198 self.assertTrue(kneeT2 in t) | |
199 | |
200 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
201 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
203 | |
204 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
205 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
206 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
207 | |
208 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
209 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
210 | |
211 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
212 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
213 | |
214 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
215 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
216 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
217 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
218 | |
219 for patient in p: | |
220 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
221 self.assertEqual(patient, study['ParentPatient']) | |
222 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
223 self.assertEqual(study['ID'], series['ParentStudy']) | |
224 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
225 self.assertEqual(series['ID'], instance['ParentSeries']) | |
226 | |
227 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
228 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
229 | |
230 | |
231 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
232 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
233 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
234 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
235 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
236 self.assertEqual(None, r) | |
237 | |
238 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
239 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
240 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
241 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
242 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
243 self.assertEqual('Study', r['Type']) | |
244 self.assertEqual(kneeStudy, r['ID']) | |
245 | |
246 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
247 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
248 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
249 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
250 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
251 self.assertEqual('Series', r['Type']) | |
252 self.assertEqual(kneeT1, r['ID']) | |
253 | |
254 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
255 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
256 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
257 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
258 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
259 self.assertEqual(None, r) | |
260 | |
261 DropOrthanc(_REMOTE) | |
262 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
263 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 264 |
265 | |
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266 def test_multiframe(self): |
7 | 267 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
268 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
269 | |
270 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
271 self.assertEqual("L", im.mode) | |
272 self.assertEqual(512, im.size[0]) | |
273 self.assertEqual(512, im.size[1]) | |
274 | |
275 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
276 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
277 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
278 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
279 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
280 | |
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281 |
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282 def test_changes(self): |
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283 # Check emptiness |
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284 c = DoGet(_REMOTE, '/changes') |
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285 self.assertEqual(0, len(c['Changes'])) |
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286 self.assertEqual(0, c['Last']) |
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287 self.assertTrue(c['Done']) |
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288 c = DoGet(_REMOTE, '/changes?last') |
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289 self.assertEqual(0, len(c['Changes'])) |
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290 self.assertEqual(0, c['Last']) |
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291 self.assertTrue(c['Done']) |
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292 |
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293 # Add 1 instance |
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294 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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295 c = DoGet(_REMOTE, '/changes') |
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296 begin = c['Last'] |
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297 self.assertEqual(4, len(c['Changes'])) |
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298 self.assertTrue(c['Done']) |
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299 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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300 |
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301 c = DoGet(_REMOTE, '/changes?last') |
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302 self.assertEqual(1, len(c['Changes'])) |
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303 self.assertEqual(begin, c['Last']) |
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304 self.assertTrue(c['Done']) |
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305 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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306 self.assertEqual(1, len(c['Changes'])) |
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307 self.assertEqual(begin, c['Last']) |
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308 self.assertTrue(c['Done']) |
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309 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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310 self.assertEqual(1, len(c['Changes'])) |
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311 self.assertEqual(begin - 1, c['Last']) |
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312 self.assertFalse(c['Done']) |
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313 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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314 self.assertEqual(1, len(c['Changes'])) |
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315 self.assertEqual(begin - 2, c['Last']) |
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316 self.assertFalse(c['Done']) |
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317 |
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318 UploadFolder(_REMOTE, 'Knee/T1') |
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319 UploadFolder(_REMOTE, 'Knee/T2') |
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320 since = begin |
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321 countPatients = 0 |
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322 countStudies = 0 |
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323 countSeries = 0 |
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324 countInstances = 0 |
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325 completed = 0 |
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326 while True: |
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327 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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328 since = c['Last'] |
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329 for i in c['Changes']: |
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330 if i['ResourceType'] == 'Instance': |
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331 countInstances += 1 |
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332 if i['ResourceType'] == 'Patient': |
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333 countPatients += 1 |
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334 if i['ResourceType'] == 'Study': |
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335 countStudies += 1 |
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336 if i['ResourceType'] == 'Series': |
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337 countSeries += 1 |
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338 if i['ChangeType'] == 'NewInstance': |
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339 countInstances += 1 |
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340 if i['ChangeType'] == 'NewPatient': |
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341 countPatients += 1 |
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342 if i['ChangeType'] == 'NewStudy': |
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343 countStudies += 1 |
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344 if i['ChangeType'] == 'NewSeries': |
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345 countSeries += 1 |
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346 if i['ChangeType'] == 'CompletedSeries': |
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347 completed += 1 |
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348 self.assertTrue('ID' in i) |
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349 self.assertTrue('Path' in i) |
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350 self.assertTrue('Seq' in i) |
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351 if c['Done']: |
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352 break |
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353 |
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354 self.assertEqual(2 * 50, countInstances) |
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355 self.assertEqual(2 * 1, countPatients) |
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356 self.assertEqual(2 * 1, countStudies) |
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357 self.assertEqual(2 * 2, countSeries) |
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358 self.assertEqual(0, completed) |
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359 |
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360 |
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361 def test_archive(self): |
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362 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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363 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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364 |
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365 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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366 self.assertEqual(2, len(z.namelist())) |
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367 |
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368 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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369 self.assertEqual(2, len(z.namelist())) |
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370 |
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371 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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372 self.assertEqual(1, len(z.namelist())) |
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373 |
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374 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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375 |
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376 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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377 self.assertEqual(2, len(z.namelist())) |
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378 |
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379 |
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380 def test_media_archive(self): |
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381 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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382 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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383 |
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384 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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385 self.assertEqual(3, len(z.namelist())) |
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386 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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387 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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388 self.assertTrue('DICOMDIR' in z.namelist()) |
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|
389 |
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|
390 try: |
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391 os.remove('/tmp/DICOMDIR') |
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392 except: |
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393 # The file does not exist |
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394 pass |
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changeset
|
395 |
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396 z.extract('DICOMDIR', '/tmp') |
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397 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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398 stderr = subprocess.STDOUT).split('\n') |
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399 self.assertEqual(3, len(a)) |
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400 self.assertTrue(a[0].startswith('Warning')) |
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401 self.assertEqual('BasicDirectory', a[1]) |
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402 self.assertEqual('', a[2]) |
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changeset
|
403 |
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changeset
|
404 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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405 stderr = subprocess.STDOUT).split('\n') |
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406 self.assertEqual(1, len(a)) |
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407 self.assertEqual('', a[0]) |
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changeset
|
408 |
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|
409 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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410 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
411 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
412 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
413 os.remove('/tmp/DICOMDIR') |
10 | 414 |
415 | |
416 def test_protection(self): | |
417 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
418 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
419 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
420 a = DoGet(_REMOTE, '/patients')[0] | |
421 b = DoGet(_REMOTE, '/patients')[1] | |
422 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
423 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
424 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
425 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
426 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
427 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
428 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
429 | |
430 | |
12 | 431 def test_raw_tags(self): |
10 | 432 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
433 | |
434 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
435 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
436 | |
437 s = '/instances/%s/content/' % i | |
438 | |
439 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
440 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
441 | |
442 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
443 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
444 | |
445 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
446 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
447 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
448 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
449 | |
450 for i in DoGet(_REMOTE, '/instances'): | |
451 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
452 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
453 | |
454 | |
455 def test_raw_tags_mdn(self): | |
456 # Bug reported by Cyril Paulus | |
457 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
458 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
459 | |
460 | |
461 def test_modify_instance(self): | |
462 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
463 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
464 json.dumps({ | |
465 "Replace" : { | |
466 "PatientName" : "hello", | |
467 #"PatientID" : "world" | |
468 }, | |
469 "Remove" : [ "StationName" ], | |
470 "RemovePrivateTags" : None | |
471 }), | |
472 'application/json') | |
473 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
474 | |
475 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
476 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
477 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
478 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
479 | |
480 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
481 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
482 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
483 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
484 | |
485 | |
486 def test_modify_series(self): | |
487 # Upload 4 images from the same series | |
488 for i in range(4): | |
489 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
490 | |
491 origSeries = DoGet(_REMOTE, '/series')[0] | |
492 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
493 '{"Replace":{"PatientName":"Jodogne"}}', | |
494 'application/json')['ID'] | |
495 | |
496 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
497 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
498 self.assertEqual(4, len(instances)) | |
499 for i in instances: | |
500 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
501 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
502 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
503 | |
504 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
505 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
506 | |
507 | |
508 def test_modify_study(self): | |
509 # Upload 4 images from the 2 series of the same study | |
510 for i in range(4): | |
511 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
512 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
513 | |
514 origStudy = DoGet(_REMOTE, '/studies')[0] | |
515 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
516 '{"Replace":{"PatientName":"Jodogne"}}', | |
517 'application/json')['ID'] | |
518 | |
519 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
520 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
521 self.assertEqual(2, len(series)) | |
522 for s in series: | |
523 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
524 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
525 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
526 | |
527 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
528 for i in instances: | |
529 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
530 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
531 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
532 | |
533 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
534 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
535 | |
536 | |
537 def test_anonymize_series(self): | |
538 # Upload 4 images from the same series | |
539 for i in range(4): | |
540 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
541 | |
542 origSeries = DoGet(_REMOTE, '/series')[0] | |
543 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
544 '{}', | |
545 'application/json')['ID'] | |
546 | |
547 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
548 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
549 self.assertEqual(4, len(instances)) | |
550 for i in instances: | |
551 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
552 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
553 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
554 | |
555 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
556 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
557 | |
558 | |
559 def test_anonymize_study(self): | |
560 # Upload 4 images from the 2 series of the same study | |
561 for i in range(4): | |
562 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
563 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
564 | |
565 origStudy = DoGet(_REMOTE, '/studies')[0] | |
566 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
567 '{"Replace":{"PatientName":"Jodogne"}}', | |
568 'application/json')['ID'] | |
569 | |
570 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
571 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
572 self.assertEqual(2, len(series)) | |
573 for s in series: | |
574 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
575 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
576 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
577 | |
578 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
579 for i in instances: | |
580 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
581 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
582 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
583 | |
584 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
585 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 586 |
587 | |
588 | |
589 def test_storescu(self): | |
590 # Check emptiness | |
591 e = DoGet(_REMOTE, '/exports') | |
592 self.assertEqual(0, len(e['Exports'])) | |
593 self.assertEqual(0, e['Last']) | |
594 self.assertTrue(e['Done']) | |
595 e = DoGet(_REMOTE, '/exports?last') | |
596 self.assertEqual(0, len(e['Exports'])) | |
597 self.assertEqual(0, e['Last']) | |
598 self.assertTrue(e['Done']) | |
599 | |
600 # Add 1 instance | |
601 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
602 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
603 | |
604 # Export the instance | |
605 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
606 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
607 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
608 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
609 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
610 | |
611 e = DoGet(_REMOTE, '/exports') | |
612 self.assertEqual(1, len(e['Exports'])) | |
613 self.assertTrue(e['Done']) | |
614 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
615 e = DoGet(_REMOTE, '/exports?limit=1') | |
616 self.assertEqual(1, len(e['Exports'])) | |
617 self.assertTrue(e['Done']) | |
618 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
619 e = DoGet(_REMOTE, '/exports?last') | |
620 self.assertEqual(1, len(e['Exports'])) | |
621 self.assertTrue(e['Done']) | |
622 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
623 seqInstance = e['Last'] | |
624 | |
625 # Export the series | |
626 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
627 | |
628 e = DoGet(_REMOTE, '/exports') | |
629 self.assertEqual(2, len(e['Exports'])) | |
630 self.assertTrue(e['Done']) | |
631 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
632 seqSeries = e['Last'] | |
633 self.assertNotEqual(seqInstance, seqSeries) | |
634 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
635 self.assertEqual(1, len(e['Exports'])) | |
636 self.assertFalse(e['Done']) | |
637 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
638 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
639 self.assertEqual(1, len(e['Exports'])) | |
640 self.assertTrue(e['Done']) | |
641 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
642 e = DoGet(_REMOTE, '/exports?last') | |
643 self.assertEqual(1, len(e['Exports'])) | |
644 self.assertTrue(e['Done']) | |
645 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
646 | |
647 # Export the study | |
648 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
649 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
650 | |
651 # Export the patient | |
652 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
653 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
654 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
655 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
656 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
657 | |
658 e = DoGet(_REMOTE, '/exports') | |
659 self.assertEqual(4, len(e['Exports'])) | |
660 self.assertTrue(e['Done']) | |
661 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
662 seqPatient = e['Last'] | |
663 self.assertNotEqual(seqInstance, seqSeries) | |
664 self.assertNotEqual(seqSeries, seqStudy) | |
665 self.assertNotEqual(seqStudy, seqPatient) | |
666 self.assertTrue(seqInstance < seqSeries) | |
667 self.assertTrue(seqSeries < seqStudy) | |
668 self.assertTrue(seqStudy < seqPatient) | |
669 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
670 self.assertEqual(1, len(e['Exports'])) | |
671 self.assertFalse(e['Done']) | |
672 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
673 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
674 self.assertEqual(1, len(e['Exports'])) | |
675 self.assertFalse(e['Done']) | |
676 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
677 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
678 self.assertEqual(1, len(e['Exports'])) | |
679 self.assertFalse(e['Done']) | |
680 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
681 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
682 self.assertEqual(1, len(e['Exports'])) | |
683 self.assertTrue(e['Done']) | |
684 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
685 e = DoGet(_REMOTE, '/exports?last') | |
686 self.assertEqual(1, len(e['Exports'])) | |
687 self.assertTrue(e['Done']) | |
688 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
689 | |
690 | |
691 # Check the content of the logged information | |
692 e = DoGet(_REMOTE, '/exports')['Exports'] | |
693 | |
694 if 'PatientID' in e[0]: | |
695 # Since Orthanc 0.8.6 | |
696 patient = 'PatientID' | |
697 study = 'StudyInstanceUID' | |
698 series = 'SeriesInstanceUID' | |
699 instance = 'SOPInstanceUID' | |
700 else: | |
701 # Up to Orthanc 0.8.5 | |
702 patient = 'PatientId' | |
703 study = 'StudyInstanceUid' | |
704 series = 'SeriesInstanceUid' | |
705 instance = 'SopInstanceUid' | |
706 | |
707 for k in range(4): | |
708 self.assertTrue('Date' in e[k]) | |
709 self.assertTrue('Seq' in e[k]) | |
710 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
711 | |
712 self.assertEqual(10, len(e[0])) | |
713 self.assertEqual('Instance', e[0]['ResourceType']) | |
714 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
715 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
716 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
717 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
718 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
719 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
720 | |
721 self.assertEqual(9, len(e[1])) | |
722 self.assertEqual('Series', e[1]['ResourceType']) | |
723 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
724 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
725 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
726 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
727 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
728 | |
729 self.assertEqual(8, len(e[2])) | |
730 self.assertEqual('Study', e[2]['ResourceType']) | |
731 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
732 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
733 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
734 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
735 | |
736 self.assertEqual(7, len(e[3])) | |
737 self.assertEqual('Patient', e[3]['ResourceType']) | |
738 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
739 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
740 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
741 | |
742 DropOrthanc(_REMOTE) | |
743 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
744 | |
745 | |
746 def test_store_peer(self): | |
747 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
748 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
749 | |
750 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
751 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
752 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
753 | |
754 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
755 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
756 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
757 | |
758 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
759 | |
760 DropOrthanc(_REMOTE) | |
761 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
762 | |
763 | |
764 def test_bulk_storescu(self): | |
765 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
766 | |
767 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
768 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
769 | |
770 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
771 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
772 | |
773 DropOrthanc(_LOCAL) | |
774 | |
775 # Send using patient's UUID | |
776 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
777 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
778 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
779 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
780 | |
781 | |
782 def test_color(self): | |
783 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
784 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
785 self.assertEqual("RGB", im.mode) | |
786 self.assertEqual(41, im.size[0]) | |
787 self.assertEqual(41, im.size[1]) | |
788 | |
789 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 790 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 791 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
792 | |
793 | |
12 | 794 def test_faking_ruby_put(self): |
795 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
796 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
797 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
798 a = DoGet(_REMOTE, '/patients')[0] | |
799 b = DoGet(_REMOTE, '/patients')[1] | |
800 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
801 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
802 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
803 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
804 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
805 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
806 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
807 | |
808 | |
809 def test_faking_ruby_delete(self): | |
810 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
811 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
812 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
813 a = DoGet(_REMOTE, '/patients')[0] | |
814 b = DoGet(_REMOTE, '/patients')[1] | |
815 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
816 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
817 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
818 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
819 | |
820 | |
821 def test_faking_google_put(self): | |
822 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
823 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
824 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
825 a = DoGet(_REMOTE, '/patients')[0] | |
826 b = DoGet(_REMOTE, '/patients')[1] | |
827 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
828 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
829 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
830 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
831 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
832 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
833 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
834 | |
835 | |
836 def test_faking_google_delete(self): | |
837 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
838 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
839 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
840 a = DoGet(_REMOTE, '/patients')[0] | |
841 b = DoGet(_REMOTE, '/patients')[1] | |
842 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
843 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
844 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
845 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
846 | |
847 | |
848 def test_lua(self): | |
849 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
850 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
851 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
852 | |
853 | |
854 def test_metadata(self): | |
855 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
856 p = DoGet(_REMOTE, '/patients')[0] | |
857 i = DoGet(_REMOTE, '/instances')[0] | |
858 | |
859 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
860 self.assertEqual(1, len(m)) | |
861 self.assertEqual('LastUpdate', m[0]) | |
862 | |
863 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
864 self.assertEqual(3, len(m)) | |
865 self.assertTrue('IndexInSeries' in m) | |
866 self.assertTrue('ReceptionDate' in m) | |
867 self.assertTrue('RemoteAET' in m) | |
868 | |
869 # Play with custom metadata | |
870 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
871 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
872 self.assertEqual(2, len(m)) | |
873 self.assertTrue('LastUpdate' in m) | |
874 self.assertTrue('5555' in m) | |
875 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
876 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
877 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
878 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
879 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
880 self.assertEqual(1, len(m)) | |
881 self.assertTrue('LastUpdate' in m) | |
13 | 882 |
883 | |
884 def test_statistics(self): | |
885 # Upload 16 instances | |
886 for i in range(4): | |
887 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
888 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
889 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
890 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
891 | |
892 s = DoGet(_REMOTE, '/statistics') | |
893 self.assertEqual(16, s['CountInstances']) | |
894 self.assertEqual(2, s['CountPatients']) | |
895 self.assertEqual(2, s['CountStudies']) | |
896 self.assertEqual(4, s['CountSeries']) | |
897 d = int(s['TotalUncompressedSize']) | |
898 | |
899 e = 0 | |
900 for patient in DoGet(_REMOTE, '/patients'): | |
901 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
902 self.assertEqual(8, s['CountInstances']) | |
903 self.assertEqual(1, s['CountStudies']) | |
904 self.assertEqual(2, s['CountSeries']) | |
905 e += int(s['UncompressedSize']) | |
906 | |
907 for study in DoGet(_REMOTE, '/studies'): | |
908 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
909 self.assertEqual(8, s['CountInstances']) | |
910 self.assertEqual(2, s['CountSeries']) | |
911 e += int(s['UncompressedSize']) | |
912 | |
913 for series in DoGet(_REMOTE, '/series'): | |
914 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
915 self.assertEqual(4, s['CountInstances']) | |
916 e += int(s['UncompressedSize']) | |
917 | |
918 self.assertEqual(3 * d, e) | |
919 | |
920 | |
921 def test_custom_attachment(self): | |
922 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
923 patient = DoGet(_REMOTE, '/patients')[0] | |
924 instance = DoGet(_REMOTE, '/instances')[0] | |
925 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
926 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
927 | |
928 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
929 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
930 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
931 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
932 | |
933 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
934 hello = 'hellohellohellohellohellohellohellohellohello' | |
935 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
936 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
937 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
938 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
939 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
940 | |
941 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
942 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
943 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
944 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
945 size + | |
946 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
947 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
948 | |
949 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
950 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
951 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
952 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
953 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
954 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
955 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
956 | |
957 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
958 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
959 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
960 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
961 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
962 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
963 | |
964 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
965 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
966 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
967 | |
968 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
969 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
970 | |
971 | |
972 def test_incoming_storescu(self): | |
973 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
974 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
975 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
976 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
977 | |
978 | |
979 def test_incoming_findscu(self): | |
980 def CallFindScu(args): | |
981 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
982 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
983 stderr=subprocess.PIPE) | |
984 return p.communicate()[1] | |
985 | |
986 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
987 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
988 | |
989 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
990 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
991 self.assertEqual(2, len(patientNames)) | |
992 self.assertTrue('Test Patient BG ' in patientNames) | |
993 self.assertTrue('Anonymized' in patientNames) | |
994 | |
995 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
996 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
997 self.assertEqual(2, len(series)) | |
998 self.assertTrue('20070208' in series) | |
999 self.assertTrue('19980312' in series) | |
1000 | |
1001 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
1002 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1003 self.assertEqual(1, len(series)) | |
1004 | |
1005 # Test the "CaseSentitivePN" flag (false by default) | |
1006 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1007 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1008 self.assertEqual(1, len(series)) | |
1009 | |
1010 | |
1011 def test_incoming_movescu(self): | |
1012 def CallMoveScu(args): | |
1013 subprocess.check_call([ 'movescu', | |
17 | 1014 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
1015 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
1016 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
13 | 1017 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
1018 stderr=subprocess.PIPE) | |
1019 | |
1020 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1021 | |
1022 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
17 | 1023 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1024 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
1025 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
1026 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1027 | |
1028 | |
1029 def test_findscu(self): | |
1030 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1031 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1032 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1033 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1034 | |
1035 # Test the "find-patient" level | |
1036 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1037 self.assertEqual(1, len(p)) | |
1038 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1039 | |
1040 # Test wildcards constraints. The "LO" value representation | |
1041 # for PatientID is always case-sensitive, but the "PN" for | |
1042 # PatientName might depend on the implementation: | |
1043 # "GenerateConfigurationForTests.py" will force it to be case | |
1044 # insensitive (which was the default until Orthanc 0.8.6). | |
1045 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1046 self.assertEqual(1, len(p)) | |
1047 | |
1048 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1049 self.assertEqual(1, len(p)) | |
1050 | |
1051 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1052 self.assertEqual(1, len(p)) | |
1053 | |
1054 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1055 self.assertEqual(1, len(p)) | |
1056 | |
1057 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1058 self.assertEqual(0, len(p)) | |
1059 | |
1060 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1061 self.assertEqual(0, len(p)) | |
1062 | |
1063 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1064 self.assertEqual(0, len(p)) | |
1065 | |
1066 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1067 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1068 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1069 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1070 | |
1071 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1072 self.assertEqual(2, len(p)) | |
1073 | |
1074 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1075 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1076 self.assertEqual(1, len(s)) | |
1077 self.assertEqual('20070208', s[0]['StudyDate']) | |
1078 | |
1079 # Test range searches | |
1080 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1081 'StudyDate' : '-20070101' }) | |
1082 self.assertEqual(0, len(t)) | |
1083 | |
1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1085 'StudyDate' : '20090101-' }) | |
1086 self.assertEqual(0, len(t)) | |
1087 | |
1088 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1089 'StudyDate' : '20070101-' }) | |
1090 self.assertEqual(1, len(t)) | |
1091 | |
1092 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1093 'StudyDate' : '-20090101' }) | |
1094 self.assertEqual(1, len(t)) | |
1095 | |
1096 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1097 'StudyDate' : '20070207-20070207' }) | |
1098 self.assertEqual(0, len(t)) | |
1099 | |
1100 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1101 'StudyDate' : '20070208-20070208' }) | |
1102 self.assertEqual(1, len(t)) | |
1103 | |
1104 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1105 'StudyDate' : '20070209-20070209' }) | |
1106 self.assertEqual(0, len(t)) | |
1107 | |
1108 # Test the ModalitiesInStudy tag | |
1109 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1110 'PatientID' : 'B9uTHKOZ', | |
1111 'ModalitiesInStudy' : 'US' }) | |
1112 self.assertEqual(0, len(t)) | |
1113 | |
1114 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1115 'PatientID' : 'B9uTHKOZ', | |
1116 'ModalitiesInStudy' : 'CT' }) | |
1117 self.assertEqual(1, len(t)) | |
1118 | |
1119 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1120 'PatientID' : 'B9uTHKOZ', | |
1121 'ModalitiesInStudy' : 'US\\CT' }) | |
1122 self.assertEqual(1, len(t)) | |
1123 | |
1124 # Test the "find-series" level | |
1125 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1126 'PatientID' : 'B9uTHKOZ', | |
1127 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1128 self.assertEqual(1, len(t)) | |
1129 | |
1130 # Test "\" separator | |
1131 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1132 'PatientID' : 'B9uTHKOZ', | |
1133 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1134 'Modality' : 'MR\\CT\\US' }) | |
1135 self.assertEqual(1, len(t)) | |
1136 | |
1137 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1138 'PatientID' : 'B9uTHKOZ', | |
1139 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1140 'Modality' : 'MR\\US' }) | |
1141 self.assertEqual(0, len(t)) | |
1142 | |
1143 | |
1144 def test_update_modalities(self): | |
1145 try: | |
1146 DoDelete(_REMOTE, '/modalities/toto') | |
1147 except: | |
1148 pass | |
1149 try: | |
1150 DoDelete(_REMOTE, '/modalities/tata') | |
1151 except: | |
1152 pass | |
1153 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1154 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1155 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1156 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1157 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1158 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1159 DoDelete(_REMOTE, '/modalities/toto') | |
1160 DoDelete(_REMOTE, '/modalities/tata') | |
1161 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1162 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1163 | |
1164 | |
1165 def test_update_peers(self): | |
1166 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1167 try: | |
1168 DoDelete(_REMOTE, '/peers/toto') | |
1169 except: | |
1170 pass | |
1171 try: | |
1172 DoDelete(_REMOTE, '/peers/tata') | |
1173 except: | |
1174 pass | |
1175 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1176 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1177 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1178 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1179 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1180 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1181 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1182 DoDelete(_REMOTE, '/peers/toto') | |
1183 DoDelete(_REMOTE, '/peers/tata') | |
1184 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1185 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1186 | |
1187 | |
1188 def test_mesterhazy_modification(self): | |
1189 # When I modify a series ( eg. curl | |
1190 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1191 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1192 # series is added to a new Study, instead of the existing | |
1193 # Study. Fixed in Orthanc 0.7.5 | |
1194 | |
1195 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1196 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1197 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1198 | |
1199 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1200 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1201 | |
1202 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1203 | |
1204 | |
1205 def test_create(self): | |
1206 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1207 json.dumps({ | |
1208 'PatientName' : 'Jodogne', | |
1209 'Modality' : 'CT', | |
1210 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
1211 })) | |
1212 | |
1213 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1214 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1215 | |
1216 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1217 self.assertEqual((5, 5), png.size) | |
1218 | |
1219 | |
1220 def test_pilates(self): | |
1221 # "SCU failed error when accessing orthanc with osirix" by | |
1222 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1223 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1224 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1225 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1226 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1227 | |
1228 | |
1229 def test_shared_tags(self): | |
1230 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1231 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1232 p = DoGet(_REMOTE, '/patients')[0] | |
1233 | |
1234 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1235 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1236 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1237 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1238 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1239 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1240 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1241 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1242 | |
1243 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1244 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1245 | |
1246 | |
1247 def test_modules(self): | |
1248 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1249 p = DoGet(_REMOTE, '/patients')[0] | |
1250 s = DoGet(_REMOTE, '/studies')[0] | |
1251 t = DoGet(_REMOTE, '/series')[0] | |
1252 | |
1253 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1254 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1255 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1256 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1257 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1258 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1259 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1260 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1261 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1262 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1263 | |
1264 | |
1265 def test_auto_directory(self): | |
1266 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1267 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1268 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1269 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1270 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1271 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1272 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1273 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1274 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1275 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1276 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1277 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1278 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1279 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
1280 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
1281 | |
1282 | |
1283 def test_echo(self): | |
1284 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1285 | |
1286 | |
1287 def test_xml(self): | |
1288 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1289 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1290 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1291 self.assertEqual(len(items), len(json)) | |
1292 | |
1293 self.assertTrue('dicom-conformance' in json) | |
1294 | |
1295 ok = False | |
1296 for i in items: | |
1297 if i.childNodes[0].data == 'dicom-conformance': | |
1298 ok = True | |
1299 self.assertTrue(ok) | |
1300 | |
1301 | |
1302 def test_issue_16(self): | |
1303 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
1304 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1305 self.assertEqual('0018,1063', t) | |
1306 | |
1307 | |
1308 def test_issue_22(self): | |
1309 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1310 a = [ | |
1311 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1312 "c69eee9a51eea3e8611e82e578897254", | |
1313 "315666be83e2d0111c77bc0996d84901", | |
1314 "3e27aa959d911172c48a1436443c72b1", | |
1315 "958642c9e7e9d232d3869faff546058c", | |
1316 "5e7ea8e3e4230cae707d143481355c59", | |
1317 "eda37f83558d858a596175aed8b2ad47", | |
1318 "486713bd2895c4ecbe0e97715ac7f80a", | |
1319 "091ef729eb169e67da8a0faa9631f9a8", | |
1320 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1321 "e2f39e85896fe58876654b94cd0b5013", | |
1322 "6fd2129e4950abbe1be053bc814d5da8", | |
1323 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1324 "746f808582156734dd6b6fdfd3a0b72c", | |
1325 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1326 "806b8b3e300c615099c11a5ec23465aa", | |
1327 "7c836aa298ba6eef96434579af631a11", | |
1328 "a0357dc9f4f72d73a885c33d7c287446", | |
1329 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1330 "8b114c526b8cbed6cad8a3248b7b480c", | |
1331 "44e6670f127e612a2b4aa60a0d207698", | |
1332 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1333 "95c796c2fa8f59018b15cf2987b1f79b", | |
1334 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1335 ] | |
1336 | |
1337 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1338 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1339 | |
1340 for i in range(len(a)): | |
1341 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1342 | |
1343 | |
1344 def test_issue_19(self): | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1345 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1346 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1347 | |
1348 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1349 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1350 |
1351 | |
1352 def test_issue_37(self): | |
1353 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
1354 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1355 | |
1356 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1357 'CaseSensitive' : True, | |
1358 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1359 self.assertEqual(1, len(a)) | |
14 | 1360 |
1361 | |
1362 def test_rest_find(self): | |
1363 # Upload 8 instances | |
1364 for i in range(2): | |
1365 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1366 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1367 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1368 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1369 | |
1370 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1371 'CaseSensitive' : False, | |
1372 'Query' : { 'PatientName' : '*n*' }}) | |
1373 self.assertEqual(2, len(a)) | |
1374 | |
1375 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1376 'CaseSensitive' : True, | |
1377 'Query' : { 'PatientName' : '*n*' }}) | |
1378 self.assertEqual(0, len(a)) | |
1379 | |
1380 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1381 'Level' : 'Patient', | |
1382 'CaseSensitive' : False, | |
1383 'Query' : { 'PatientName' : '*ne*' }}) | |
1384 self.assertEqual(1, len(a)) | |
1385 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1386 | |
1387 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1388 'CaseSensitive' : True, | |
1389 'Query' : { 'PatientName' : '*ne*' }}) | |
1390 self.assertEqual(0, len(a)) | |
1391 | |
1392 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1393 'CaseSensitive' : True, | |
1394 'Query' : { 'PatientName' : '*NE*' }}) | |
1395 self.assertEqual(1, len(a)) | |
1396 | |
1397 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1398 'CaseSensitive' : True, | |
1399 'Query' : { 'PatientName' : '*NE*' }}) | |
1400 self.assertEqual(2, len(a)) | |
1401 | |
1402 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1403 'CaseSensitive' : True, | |
1404 'Query' : { 'PatientName' : '*NE*' }}) | |
1405 self.assertEqual(4, len(a)) | |
1406 | |
1407 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1408 self.assertEqual(2, len(a)) | |
1409 | |
1410 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1411 self.assertEqual(2, len(a)) | |
1412 | |
1413 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1414 self.assertEqual(4, len(a)) | |
1415 | |
1416 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1417 self.assertEqual(8, len(a)) | |
1418 | |
1419 | |
1420 def test_rest_query_retrieve(self): | |
1421 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1422 | |
1423 # Upload 8 instances | |
1424 for i in range(2): | |
1425 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1426 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1427 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1428 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1429 | |
1430 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1431 for p in DoGet(_REMOTE, '/patients'): | |
1432 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1433 DoDelete(_REMOTE, '/patients/%s' % p) | |
1434 | |
1435 for q in DoGet(_REMOTE, '/queries'): | |
1436 DoDelete(_REMOTE, '/queries/%s' % q) | |
1437 | |
1438 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1439 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1440 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
1441 'Query' : { 'PatientName' : '*NE*' }})['ID'] | |
1442 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) | |
1443 | |
1444 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1445 self.assertTrue('answers' in b) | |
1446 self.assertTrue('level' in b) | |
1447 self.assertTrue('modality' in b) | |
1448 self.assertTrue('query' in b) | |
1449 self.assertTrue('retrieve' in b) | |
1450 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1451 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1452 | |
1453 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
1454 self.assertEqual(1, len(q)) | |
1455 self.assertTrue('PatientName' in q) | |
1456 self.assertEqual('*NE*', q['PatientName']) | |
1457 | |
1458 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1459 | |
1460 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1461 self.assertTrue('content' in s) | |
1462 self.assertTrue('retrieve' in s) | |
1463 | |
1464 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1465 self.assertEqual('887', s['PatientID']) | |
1466 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1467 | |
1468 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1469 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1470 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1471 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1472 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1473 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1474 | |
1475 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
1476 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1477 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1478 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1479 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1480 | |
1481 DoDelete(_REMOTE, '/queries/%s' % a) | |
1482 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1483 | |
1484 | |
1485 def test_parent(self): | |
1486 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1487 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1488 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1489 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1490 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
1491 self.assertEqual(instance, u); | |
1492 | |
1493 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1494 self.assertEqual('Patient', a['Type']) | |
1495 self.assertEqual(patient, a['ID']) | |
1496 | |
1497 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1498 self.assertEqual('Patient', a['Type']) | |
1499 self.assertEqual(patient, a['ID']) | |
1500 | |
1501 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1502 self.assertEqual('Study', a['Type']) | |
1503 self.assertEqual(study, a['ID']) | |
1504 | |
1505 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1506 self.assertEqual('Patient', a['Type']) | |
1507 self.assertEqual(patient, a['ID']) | |
1508 | |
1509 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1510 self.assertEqual('Study', a['Type']) | |
1511 self.assertEqual(study, a['ID']) | |
1512 | |
1513 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1514 self.assertEqual('Series', a['Type']) | |
1515 self.assertEqual(series, a['ID']) | |
1516 | |
1517 | |
1518 def test_shanon(self): | |
1519 def Anonymize(instance, replacements = {}): | |
1520 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
1521 | |
1522 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1523 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1524 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1525 | |
1526 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1527 ids = [ 'ozp00SjY2xG', | |
1528 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1529 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1530 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1531 | |
1532 a = ExtractDicomTags(Anonymize(u), tags) | |
1533 for i in range(4): | |
1534 self.assertNotEqual(ids[i], a[i]) | |
1535 self.assertTrue(a[4].startswith('Orthanc')) | |
1536 | |
1537 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1538 for i in range(4): | |
1539 self.assertNotEqual(ids[i], a[i]) | |
1540 self.assertFalse(a[4].startswith('Orthanc')) | |
1541 | |
1542 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1543 self.assertEqual('instance', a[3]) | |
1544 self.assertFalse(a[4].startswith('Orthanc')) | |
1545 | |
1546 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1547 self.assertEqual('series', a[2]) | |
1548 self.assertFalse(a[4].startswith('Orthanc')) | |
1549 | |
1550 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1551 self.assertEqual('study', a[1]) | |
1552 self.assertFalse(a[4].startswith('Orthanc')) | |
1553 | |
1554 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1555 self.assertEqual('patient', a[0]) | |
1556 self.assertFalse(a[4].startswith('Orthanc')) | |
1557 | |
1558 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1559 'StudyInstanceUID' : 'study', | |
1560 'SeriesInstanceUID' : 'series', | |
1561 'SOPInstanceUID' : 'instance' }), tags) | |
1562 self.assertEqual('patient', a[0]) | |
1563 self.assertFalse(a[4].startswith('Orthanc')) | |
1564 | |
1565 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1566 | |
1567 | |
1568 def test_shanon_2(self): | |
1569 def Modify(instance, replacements = {}): | |
1570 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
1571 | |
1572 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1573 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1574 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1575 | |
1576 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1577 ids = [ 'ozp00SjY2xG', | |
1578 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1579 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1580 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1581 | |
1582 a = ExtractDicomTags(Modify(u), tags) | |
1583 self.assertEqual(ids[0], a[0]) | |
1584 self.assertEqual(ids[1], a[1]) | |
1585 self.assertEqual(ids[2], a[2]) | |
1586 self.assertNotEqual(ids[3], a[3]) | |
1587 self.assertEqual(0, len(a[4])) | |
1588 | |
1589 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1590 self.assertEqual(ids[0], a[0]) | |
1591 self.assertEqual(ids[1], a[1]) | |
1592 self.assertEqual(ids[2], a[2]) | |
1593 self.assertEqual('instance', a[3]) | |
1594 | |
1595 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1596 self.assertEqual(ids[0], a[0]) | |
1597 self.assertEqual(ids[1], a[1]) | |
1598 self.assertEqual('series', a[2]) | |
1599 self.assertNotEqual(ids[3], a[3]) | |
1600 | |
1601 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1602 self.assertEqual(ids[0], a[0]) | |
1603 self.assertEqual('study', a[1]) | |
1604 self.assertNotEqual(ids[2], a[2]) | |
1605 self.assertNotEqual(ids[3], a[3]) | |
1606 | |
1607 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1608 self.assertEqual('patient', a[0]) | |
1609 self.assertNotEqual(ids[1], a[1]) | |
1610 self.assertNotEqual(ids[2], a[2]) | |
1611 self.assertNotEqual(ids[3], a[3]) | |
1612 | |
1613 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1614 'StudyInstanceUID' : 'study', | |
1615 'SeriesInstanceUID' : 'series', | |
1616 'SOPInstanceUID' : 'instance' }), tags) | |
1617 self.assertEqual('patient', a[0]) | |
1618 self.assertEqual('study', a[1]) | |
1619 self.assertEqual('series', a[2]) | |
1620 self.assertEqual('instance', a[3]) | |
1621 | |
1622 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1623 | |
1624 | |
1625 def test_instances_tags(self): | |
1626 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1627 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1628 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1629 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1630 | |
1631 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1632 self.assertEqual(2, len(i)) | |
1633 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1634 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1635 | |
1636 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1637 self.assertEqual(2, len(i)) | |
1638 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1639 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1640 | |
1641 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1642 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1643 self.assertEqual(1, len(i)) | |
1644 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1645 | |
1646 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1647 self.assertEqual(1, len(i)) | |
1648 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1649 | |
1650 | |
1651 def test_lookup(self): | |
1652 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1653 self.assertEqual(0, len(a)) | |
1654 | |
1655 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1656 | |
1657 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1658 self.assertEqual(1, len(a)) | |
1659 self.assertEqual('Patient', a[0]['Type']) | |
1660 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1661 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1662 | |
1663 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1664 self.assertEqual(1, len(a)) | |
1665 self.assertEqual('Study', a[0]['Type']) | |
1666 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1667 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1668 | |
1669 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1670 self.assertEqual(1, len(a)) | |
1671 self.assertEqual('Series', a[0]['Type']) | |
1672 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1673 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1674 | |
1675 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1676 self.assertEqual(1, len(a)) | |
1677 self.assertEqual('Instance', a[0]['Type']) | |
1678 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1679 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1680 | |
1681 DropOrthanc(_REMOTE) | |
1682 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1683 self.assertEqual(0, len(a)) | |
1684 | |
15 | 1685 |
1686 def test_autorouting(self): | |
1687 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1688 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1689 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1690 | |
1691 # Check that this version is >= 0.8.0 | |
1692 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1693 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1694 | |
1695 UploadInstance(_REMOTE, knee1) | |
1696 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1697 | |
1698 DropOrthanc(_REMOTE) | |
1699 DropOrthanc(_LOCAL) | |
1700 InstallLuaScript('Lua/Autorouting.lua') | |
1701 UploadInstance(_REMOTE, knee1) | |
1702 UploadInstance(_REMOTE, knee2) | |
1703 UploadInstance(_REMOTE, other) | |
1704 WaitEmpty(_REMOTE) | |
1705 UninstallLuaCallbacks() | |
1706 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
1707 | |
1708 DropOrthanc(_REMOTE) | |
1709 DropOrthanc(_LOCAL) | |
1710 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
1711 UploadInstance(_REMOTE, knee1) | |
1712 UploadInstance(_REMOTE, knee2) | |
1713 UploadInstance(_REMOTE, other) | |
1714 WaitEmpty(_REMOTE) | |
1715 UninstallLuaCallbacks() | |
1716 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1717 | |
1718 DropOrthanc(_REMOTE) | |
1719 DropOrthanc(_LOCAL) | |
1720 InstallLuaScript('Lua/AutoroutingModification.lua') | |
1721 UploadInstance(_REMOTE, knee1) | |
1722 WaitEmpty(_REMOTE) | |
1723 UninstallLuaCallbacks() | |
1724 i = DoGet(_LOCAL, '/instances') | |
1725 self.assertEqual(1, len(i)) | |
1726 | |
1727 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1728 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1729 f.flush() | |
1730 routed = subprocess.check_output([ 'dcm2xml', f.name ]) | |
1731 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) | |
1732 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1733 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1734 |
1735 | |
1736 def test_storescu_rf(self): | |
1737 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
1738 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1739 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1740 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 1741 |
1742 | |
1743 def test_anonymize_instance(self): | |
1744 def AnonymizeAndUpload(instanceId, parameters): | |
1745 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
1746 'application/json'), 'application/dicom')['ID'] | |
1747 | |
1748 def ModifyAndUpload(instanceId, parameters): | |
1749 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
1750 'application/json'), 'application/dicom')['ID'] | |
1751 | |
1752 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
1753 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
1754 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
1755 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
1756 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
1757 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1758 | |
1759 b = AnonymizeAndUpload(a, '{}') | |
1760 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1761 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1762 | |
1763 # Keep private tag (only OK since Orthanc 0.8.0) | |
1764 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
1765 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1766 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1767 | |
1768 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
1769 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1770 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1771 | |
1772 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
1773 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1774 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
1775 | |
1776 # Examples from the Wiki | |
1777 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
1778 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1779 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1780 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1781 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1782 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1783 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1784 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1785 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1786 | |
1787 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
1788 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1789 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1790 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1791 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1792 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1793 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1794 | |
1795 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
1796 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1797 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1798 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
1799 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1800 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1801 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1802 | |
1803 | |
1804 # Test modify non-existing | |
1805 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1806 json.dumps({ | |
1807 'PatientName' : 'Jodogne', | |
1808 'Modality' : 'CT', | |
1809 }))['ID'] | |
1810 | |
1811 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
1812 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
1813 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
1814 | |
1815 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
1816 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
1817 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
1818 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
1819 | |
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1820 |
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1821 def test_incoming_jpeg(self): |
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1822 def storescu(): |
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1823 with open(os.devnull, 'w') as FNULL: |
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1824 subprocess.check_call([ 'storescu', '-xs', |
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1825 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1826 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], |
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1827 stderr = FNULL) |
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1828 |
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1829 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1830 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1831 self.assertRaises(Exception, storescu) |
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1832 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1833 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1834 storescu() |
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1835 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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1836 |
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1837 |
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1838 def test_storescu_jpeg(self): |
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1839 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1840 |
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1841 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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1842 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') |
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1843 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1844 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1845 |
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1846 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1847 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1848 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1849 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1850 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1851 |
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1852 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1853 |
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1854 DropOrthanc(_REMOTE) |
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1855 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1856 |
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1857 |
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1858 def test_pixel_data(self): |
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1859 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1860 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1861 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1862 |
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1863 phenixSize = 358 * 512 * 2 |
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1864 colorSize = 1000 * 1000 * 3 |
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1865 jpegSize = 51918 |
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1866 |
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1867 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1868 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1869 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1870 |
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1871 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1872 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1873 |
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1874 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1875 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1876 |
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1877 |
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1878 def test_decode_brainix(self): |
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1879 brainix = [ |
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1880 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1881 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1882 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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1883 ] |
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1884 h = '6fb11b932d535c2be04beabd99793ff8' |
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1885 maxValue = 426.0 |
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1886 |
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1887 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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1888 for i in brainix: |
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1889 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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1890 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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1891 |
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1892 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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1893 for i in brainix: |
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1894 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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1895 |
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1896 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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1897 for i in brainix: |
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1898 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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1899 |
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1900 for i in brainix: |
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1901 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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1902 |
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1903 |
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1904 def test_decode_color(self): |
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1905 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1906 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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1907 |
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1908 for i in [ imagej, color ]: |
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1909 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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1910 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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1911 |
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1912 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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1913 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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1914 |
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1915 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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1916 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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1917 |
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1918 |
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1919 def test_decode_rf(self): |
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1920 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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1921 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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1922 |
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1923 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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1924 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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1925 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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1926 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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1927 |
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1928 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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1929 |
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1930 |
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1931 def test_decode_multiframe(self): |
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1932 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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1933 |
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1934 # Test the first frame |
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1935 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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1936 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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1937 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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1938 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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1939 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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1940 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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1941 |
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1942 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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1943 |
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1944 # Test the last frame |
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1945 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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1946 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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1947 |
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1948 |
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1949 def test_decode_signed(self): |
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1950 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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1951 minValue = -2000 |
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1952 maxValue = 4042 |
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1953 |
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1954 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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1955 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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1956 |
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1957 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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1958 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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1959 |
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1960 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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1961 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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1962 |
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1963 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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1964 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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1965 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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1966 |
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1967 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |