Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.h @ 2176:c5f94c10cd61
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| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 22 Oct 2024 21:59:25 +0200 |
| parents | 2410a171ebfb |
| children |
| rev | line source |
|---|---|
| 746 | 1 /** |
| 2 * Stone of Orthanc | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 746 | 7 * |
| 8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
| 746 | 10 * as published by the Free Software Foundation, either version 3 of |
| 11 * the License, or (at your option) any later version. | |
| 12 * | |
| 13 * This program is distributed in the hope that it will be useful, but | |
| 14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
|
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
| 746 | 21 **/ |
| 22 | |
| 23 | |
| 24 #pragma once | |
| 25 | |
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26 #include "../Scene2D/LookupTableTextureSceneLayer.h" |
| 746 | 27 #include "../StoneEnumerations.h" |
| 28 #include "../Toolbox/CoordinateSystem3D.h" | |
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29 #include "Windowing.h" |
| 746 | 30 |
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31 #include <IDynamicObject.h> |
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32 #include <DicomFormat/DicomImageInformation.h> |
| 746 | 33 |
| 34 namespace OrthancStone | |
| 35 { | |
| 36 class DicomInstanceParameters : | |
| 37 public Orthanc::IDynamicObject /* to be used as a payload to SlicesSorter */ | |
| 38 { | |
| 39 // This class supersedes the deprecated "DicomFrameConverter" | |
| 40 | |
| 41 private: | |
| 1636 | 42 struct Data // Plain old struct to ease the copy constructor |
| 746 | 43 { |
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44 std::string orthancInstanceId_; |
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45 std::string studyInstanceUid_; |
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46 std::string seriesInstanceUid_; |
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47 std::string sopInstanceUid_; |
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48 SopClassUid sopClassUid_; |
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49 unsigned int numberOfFrames_; |
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50 unsigned int width_; |
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51 unsigned int height_; |
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52 bool hasSliceThickness_; |
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53 double sliceThickness_; |
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54 double pixelSpacingX_; |
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55 double pixelSpacingY_; |
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56 CoordinateSystem3D geometry_; |
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57 Vector frameOffsets_; |
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58 bool hasRescale_; |
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59 double rescaleIntercept_; |
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60 double rescaleSlope_; |
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61 std::vector<Windowing> windowingPresets_; |
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62 bool hasIndexInSeries_; |
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63 unsigned int indexInSeries_; |
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64 std::string doseUnits_; |
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65 double doseGridScaling_; |
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66 std::string frameOfReferenceUid_; |
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67 bool hasPixelSpacing_; |
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68 bool hasNumberOfFrames_; |
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69 int32_t instanceNumber_; |
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70 std::vector<Windowing> perFrameWindowing_; |
| 746 | 71 |
| 1571 | 72 explicit Data(const Orthanc::DicomMap& dicom); |
| 746 | 73 }; |
| 74 | |
| 75 | |
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76 Data data_; |
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77 std::unique_ptr<Orthanc::DicomMap> tags_; |
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78 std::unique_ptr<Orthanc::DicomImageInformation> imageInformation_; // Lazy evaluation |
| 746 | 79 |
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80 void InjectSequenceTags(const IDicomDataset& dataset); |
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81 |
| 746 | 82 public: |
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83 explicit DicomInstanceParameters(const DicomInstanceParameters& other); |
| 746 | 84 |
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85 explicit DicomInstanceParameters(const Orthanc::DicomMap& dicom); |
| 746 | 86 |
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87 DicomInstanceParameters* Clone() const |
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88 { |
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89 return new DicomInstanceParameters(*this); |
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90 } |
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91 |
| 746 | 92 void SetOrthancInstanceIdentifier(const std::string& id) |
| 93 { | |
| 94 data_.orthancInstanceId_ = id; | |
| 95 } | |
| 96 | |
| 97 const std::string& GetOrthancInstanceIdentifier() const | |
| 98 { | |
| 99 return data_.orthancInstanceId_; | |
| 100 } | |
| 101 | |
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102 const Orthanc::DicomMap& GetTags() const |
| 746 | 103 { |
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104 return *tags_; |
| 746 | 105 } |
| 106 | |
| 107 const std::string& GetStudyInstanceUid() const | |
| 108 { | |
| 109 return data_.studyInstanceUid_; | |
| 110 } | |
| 111 | |
| 112 const std::string& GetSeriesInstanceUid() const | |
| 113 { | |
| 114 return data_.seriesInstanceUid_; | |
| 115 } | |
| 116 | |
| 117 const std::string& GetSopInstanceUid() const | |
| 118 { | |
| 119 return data_.sopInstanceUid_; | |
| 120 } | |
| 121 | |
| 122 SopClassUid GetSopClassUid() const | |
| 123 { | |
| 124 return data_.sopClassUid_; | |
| 125 } | |
| 126 | |
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127 unsigned int GetNumberOfFrames() const |
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128 { |
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129 return data_.numberOfFrames_; |
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130 } |
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131 |
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132 unsigned int GetWidth() const |
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133 { |
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134 return data_.width_; |
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135 } |
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136 |
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137 unsigned int GetHeight() const |
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138 { |
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139 return data_.height_; |
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140 } |
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141 |
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142 bool HasSliceThickness() const |
| 746 | 143 { |
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144 return data_.hasSliceThickness_; |
| 746 | 145 } |
| 146 | |
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147 double GetSliceThickness() const; |
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148 |
| 746 | 149 double GetPixelSpacingX() const |
| 150 { | |
| 151 return data_.pixelSpacingX_; | |
| 152 } | |
| 153 | |
| 154 double GetPixelSpacingY() const | |
| 155 { | |
| 156 return data_.pixelSpacingY_; | |
| 157 } | |
| 158 | |
| 159 const CoordinateSystem3D& GetGeometry() const | |
| 160 { | |
| 161 return data_.geometry_; | |
| 162 } | |
| 163 | |
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164 // WARNING - Calling this method can throw exception |
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165 const Orthanc::DicomImageInformation& GetImageInformation() const; |
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166 |
| 1636 | 167 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const; |
| 746 | 168 |
| 169 bool IsPlaneWithinSlice(unsigned int frame, | |
| 1636 | 170 const CoordinateSystem3D& plane) const; |
| 746 | 171 |
| 1637 | 172 bool IsColor() const; |
| 746 | 173 |
| 174 bool HasRescale() const | |
| 175 { | |
| 176 return data_.hasRescale_; | |
| 177 } | |
| 178 | |
| 179 double GetRescaleIntercept() const; | |
| 180 | |
| 181 double GetRescaleSlope() const; | |
| 182 | |
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183 Windowing GetFallbackWindowing() const; |
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184 |
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185 size_t GetWindowingPresetsCount() const; |
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186 |
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187 Windowing GetWindowingPreset(size_t i) const; |
| 746 | 188 |
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189 Windowing GetWindowingPresetsUnion() const; |
| 746 | 190 |
| 1637 | 191 Orthanc::PixelFormat GetExpectedPixelFormat() const; |
| 746 | 192 |
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193 Orthanc::ImageAccessor* ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const; |
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194 |
| 746 | 195 TextureBaseSceneLayer* CreateTexture(const Orthanc::ImageAccessor& pixelData) const; |
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196 |
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197 LookupTableTextureSceneLayer* CreateLookupTableTexture(const Orthanc::ImageAccessor& pixelData) const; |
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198 |
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199 // NB: According to the DICOM standard, the top-left pixel has |
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200 // (originX, originY) equals to (1,1): |
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201 // https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.9.2.html |
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202 LookupTableTextureSceneLayer* CreateOverlayTexture(int originX, |
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203 int originY, |
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204 const Orthanc::ImageAccessor& overlay) const; |
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205 |
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206 bool HasIndexInSeries() const |
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207 { |
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208 return data_.hasIndexInSeries_; |
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209 } |
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210 |
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211 unsigned int GetIndexInSeries() const; |
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212 |
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213 const std::string& GetDoseUnits() const |
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214 { |
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215 return data_.doseUnits_; |
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216 } |
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217 |
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218 void SetDoseGridScaling(double value) |
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219 { |
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220 data_.doseGridScaling_ = value; |
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221 } |
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222 |
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223 double GetDoseGridScaling() const |
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224 { |
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225 return data_.doseGridScaling_; |
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226 } |
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227 |
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228 void ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image, |
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229 bool useDouble) const; |
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230 |
| 1636 | 231 double ApplyRescale(double value) const; |
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232 |
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233 // Required for RT-DOSE |
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234 bool ComputeFrameOffsetsSpacing(double& target) const; |
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235 |
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236 const std::string& GetFrameOfReferenceUid() const |
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237 { |
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238 return data_.frameOfReferenceUid_; |
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239 } |
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240 |
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241 bool HasPixelSpacing() const |
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242 { |
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243 return data_.hasPixelSpacing_; |
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244 } |
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245 |
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246 void SetPixelSpacing(double pixelSpacingX, |
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247 double pixelSpacingY); |
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248 |
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249 void EnrichUsingDicomWeb(const Json::Value& dicomweb); |
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250 |
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251 bool HasNumberOfFrames() const |
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252 { |
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253 return data_.hasNumberOfFrames_; |
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254 } |
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255 |
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256 int32_t GetInstanceNumber() const |
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257 { |
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258 return data_.instanceNumber_; |
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259 } |
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260 |
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261 CoordinateSystem3D GetMultiFrameGeometry() const; |
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262 |
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263 bool IsReversedFrameOffsets() const; |
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264 |
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265 bool LookupPerFrameWindowing(Windowing& windowing, |
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266 unsigned int frame) const; |
| 746 | 267 }; |
| 268 } |