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annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.h @ 1635:1a714e21ea7c

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start refactoring DicomInstanceParameters
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 10 Nov 2020 16:08:44 +0100
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "../StoneEnumerations.h"
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26 #include "../Scene2D/LookupTableTextureSceneLayer.h"
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27 #include "../Toolbox/CoordinateSystem3D.h"
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28
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29 #include <IDynamicObject.h>
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30 #include <DicomFormat/DicomImageInformation.h>
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31
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32 namespace OrthancStone
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33 {
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34 class DicomInstanceParameters :
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35 public Orthanc::IDynamicObject /* to be used as a payload to SlicesSorter */
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36 {
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37 // This class supersedes the deprecated "DicomFrameConverter"
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38
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39 private:
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40 struct Data // Struct to ease the copy constructor
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41 {
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42 std::string orthancInstanceId_;
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43 std::string studyInstanceUid_;
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44 std::string seriesInstanceUid_;
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45 std::string sopInstanceUid_;
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46 Orthanc::DicomImageInformation imageInformation_; // TODO REMOVE
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47 SopClassUid sopClassUid_;
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48 unsigned int numberOfFrames_;
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49 unsigned int width_;
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50 unsigned int height_;
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51 double sliceThickness_;
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52 double pixelSpacingX_;
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53 double pixelSpacingY_;
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54 CoordinateSystem3D geometry_;
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55 Vector frameOffsets_;
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56 bool isColor_; // TODO REMOVE
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57 bool hasRescale_;
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58 double rescaleIntercept_;
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59 double rescaleSlope_;
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60 bool hasDefaultWindowing_;
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61 float defaultWindowingCenter_;
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62 float defaultWindowingWidth_;
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63 Orthanc::PixelFormat expectedPixelFormat_; // TODO REMOVE
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64 bool hasIndexInSeries_;
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65 unsigned int indexInSeries_;
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66 std::string doseUnits_;
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67 double doseGridScaling_;
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68
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69 void ExtractFrameOffsets(const Orthanc::DicomMap& dicom);
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70
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71 explicit Data(const Orthanc::DicomMap& dicom);
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72
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73 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const;
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74
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75 bool IsPlaneWithinSlice(unsigned int frame,
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76 const CoordinateSystem3D& plane) const;
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77
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78 void ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image,
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79 bool useDouble) const;
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80
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81 double ApplyRescale(double value) const;
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82
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83 bool ComputeRegularSpacing(double& target) const;
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84 };
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85
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86
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87 Data data_;
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88
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89
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90 public:
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91 explicit DicomInstanceParameters(const DicomInstanceParameters& other) :
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92 data_(other.data_)
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93 {
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94 }
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95
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96 explicit DicomInstanceParameters(const Orthanc::DicomMap& dicom) :
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97 data_(dicom)
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98 {
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99 }
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100
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101 DicomInstanceParameters* Clone() const
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102 {
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103 return new DicomInstanceParameters(*this);
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104 }
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105
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106 void SetOrthancInstanceIdentifier(const std::string& id)
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107 {
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108 data_.orthancInstanceId_ = id;
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109 }
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110
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111 const std::string& GetOrthancInstanceIdentifier() const
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112 {
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113 return data_.orthancInstanceId_;
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114 }
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115
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116 const Orthanc::DicomImageInformation& GetImageInformation() const
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117 {
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118 return data_.imageInformation_;
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119 }
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120
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121 const std::string& GetStudyInstanceUid() const
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122 {
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123 return data_.studyInstanceUid_;
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124 }
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125
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126 const std::string& GetSeriesInstanceUid() const
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127 {
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128 return data_.seriesInstanceUid_;
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129 }
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130
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131 const std::string& GetSopInstanceUid() const
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132 {
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133 return data_.sopInstanceUid_;
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134 }
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135
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136 SopClassUid GetSopClassUid() const
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137 {
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138 return data_.sopClassUid_;
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139 }
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140
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141 unsigned int GetNumberOfFrames() const
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142 {
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143 return data_.numberOfFrames_;
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144 }
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146 unsigned int GetWidth() const
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147 {
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148 return data_.width_;
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149 }
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150
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151 unsigned int GetHeight() const
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152 {
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153 return data_.height_;
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154 }
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155
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156 double GetSliceThickness() const
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157 {
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158 return data_.sliceThickness_;
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159 }
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160
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161 double GetPixelSpacingX() const
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162 {
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163 return data_.pixelSpacingX_;
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164 }
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165
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166 double GetPixelSpacingY() const
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167 {
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168 return data_.pixelSpacingY_;
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169 }
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170
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171 const CoordinateSystem3D& GetGeometry() const
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172 {
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173 return data_.geometry_;
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174 }
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175
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176 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const
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177 {
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178 return data_.GetFrameGeometry(frame);
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179 }
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180
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181 bool IsPlaneWithinSlice(unsigned int frame,
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182 const CoordinateSystem3D& plane) const
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183 {
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184 return data_.IsPlaneWithinSlice(frame, plane);
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185 }
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186
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187 bool IsColor() const
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188 {
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189 return data_.isColor_;
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190 }
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191
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192 bool HasRescale() const
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193 {
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194 return data_.hasRescale_;
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195 }
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196
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197 double GetRescaleIntercept() const;
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198
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199 double GetRescaleSlope() const;
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200
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201 bool HasDefaultWindowing() const
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202 {
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203 return data_.hasDefaultWindowing_;
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204 }
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205
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206 float GetDefaultWindowingCenter() const;
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207
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208 float GetDefaultWindowingWidth() const;
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209
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210 Orthanc::PixelFormat GetExpectedPixelFormat() const
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211 {
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212 return data_.expectedPixelFormat_;
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213 }
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214
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215 Orthanc::ImageAccessor* ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const;
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216
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217 TextureBaseSceneLayer* CreateTexture(const Orthanc::ImageAccessor& pixelData) const;
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218
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219 LookupTableTextureSceneLayer* CreateLookupTableTexture(const Orthanc::ImageAccessor& pixelData) const;
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220
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221 bool HasIndexInSeries() const
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222 {
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223 return data_.hasIndexInSeries_;
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224 }
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225
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226 unsigned int GetIndexInSeries() const;
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227
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228 const std::string& GetDoseUnits() const
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229 {
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230 return data_.doseUnits_;
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231 }
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232
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233 void SetDoseGridScaling(double value)
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234 {
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235 data_.doseGridScaling_ = value;
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236 }
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237
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238 double GetDoseGridScaling() const
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239 {
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240 return data_.doseGridScaling_;
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241 }
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242
acb399643945 DicomInstanceParameters::ApplyRescale()
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243 double ApplyRescale(double value) const
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244 {
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245 return data_.ApplyRescale(value);
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246 }
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247
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248 // Required for RT-DOSE
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249 bool ComputeRegularSpacing(double& target) const
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250 {
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251 return data_.ComputeRegularSpacing(target);
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252 }
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253 };
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254 }