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annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.h @ 1679:5b8b88e5bfd6

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successfully running unit tests in WebAssembly
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 24 Nov 2020 12:59:10 +0100
parents 51bab5188a13
children 9ac2a65d4172
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "../Scene2D/LookupTableTextureSceneLayer.h"
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26 #include "../StoneEnumerations.h"
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27 #include "../Toolbox/CoordinateSystem3D.h"
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28
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29 #include <IDynamicObject.h>
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30 #include <DicomFormat/DicomImageInformation.h>
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31
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32 namespace OrthancStone
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33 {
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34 class DicomInstanceParameters :
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35 public Orthanc::IDynamicObject /* to be used as a payload to SlicesSorter */
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36 {
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37 // This class supersedes the deprecated "DicomFrameConverter"
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38
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39 private:
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40 struct Data // Plain old struct to ease the copy constructor
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41 {
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42 std::string orthancInstanceId_;
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43 std::string studyInstanceUid_;
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44 std::string seriesInstanceUid_;
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45 std::string sopInstanceUid_;
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46 SopClassUid sopClassUid_;
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47 unsigned int numberOfFrames_;
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48 unsigned int width_;
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49 unsigned int height_;
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50 double sliceThickness_;
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51 double pixelSpacingX_;
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52 double pixelSpacingY_;
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53 CoordinateSystem3D geometry_;
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54 Vector frameOffsets_;
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55 bool hasRescale_;
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56 double rescaleIntercept_;
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57 double rescaleSlope_;
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58 Vector windowingPresetCenters_;
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59 Vector windowingPresetWidths_;
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60 bool hasIndexInSeries_;
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61 unsigned int indexInSeries_;
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62 std::string doseUnits_;
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63 double doseGridScaling_;
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64 std::string frameOfReferenceUid_;
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65
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66 explicit Data(const Orthanc::DicomMap& dicom);
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67 };
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68
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69
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70 Data data_;
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71 std::unique_ptr<Orthanc::DicomMap> tags_;
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72 std::unique_ptr<Orthanc::DicomImageInformation> imageInformation_; // Lazy evaluation
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73
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74 void ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image,
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75 bool useDouble) const;
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76
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77 public:
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78 explicit DicomInstanceParameters(const DicomInstanceParameters& other) :
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79 data_(other.data_),
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80 tags_(other.tags_->Clone())
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81 {
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82 }
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83
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84 explicit DicomInstanceParameters(const Orthanc::DicomMap& dicom) :
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85 data_(dicom),
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86 tags_(dicom.Clone())
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87 {
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88 }
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89
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90 DicomInstanceParameters* Clone() const
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91 {
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92 return new DicomInstanceParameters(*this);
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93 }
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94
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95 void SetOrthancInstanceIdentifier(const std::string& id)
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96 {
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97 data_.orthancInstanceId_ = id;
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98 }
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99
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100 const std::string& GetOrthancInstanceIdentifier() const
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101 {
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102 return data_.orthancInstanceId_;
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103 }
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104
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105 const Orthanc::DicomMap& GetTags() const
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106 {
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107 return *tags_;
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108 }
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109
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110 const std::string& GetStudyInstanceUid() const
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111 {
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112 return data_.studyInstanceUid_;
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113 }
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114
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115 const std::string& GetSeriesInstanceUid() const
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116 {
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117 return data_.seriesInstanceUid_;
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118 }
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119
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120 const std::string& GetSopInstanceUid() const
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121 {
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122 return data_.sopInstanceUid_;
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123 }
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124
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125 SopClassUid GetSopClassUid() const
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126 {
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127 return data_.sopClassUid_;
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128 }
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129
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130 unsigned int GetNumberOfFrames() const
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131 {
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132 return data_.numberOfFrames_;
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133 }
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134
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135 unsigned int GetWidth() const
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136 {
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137 return data_.width_;
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138 }
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139
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140 unsigned int GetHeight() const
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141 {
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142 return data_.height_;
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143 }
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144
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145 double GetSliceThickness() const
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146 {
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147 return data_.sliceThickness_;
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148 }
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149
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150 double GetPixelSpacingX() const
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151 {
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152 return data_.pixelSpacingX_;
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153 }
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154
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155 double GetPixelSpacingY() const
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156 {
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157 return data_.pixelSpacingY_;
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158 }
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159
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160 const CoordinateSystem3D& GetGeometry() const
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161 {
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162 return data_.geometry_;
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163 }
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164
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165 // WARNING - Calling this method can throw exception
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166 const Orthanc::DicomImageInformation& GetImageInformation() const;
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167
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168 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const;
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169
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170 bool IsPlaneWithinSlice(unsigned int frame,
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171 const CoordinateSystem3D& plane) const;
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172
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173 bool IsColor() const;
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174
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175 bool HasRescale() const
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176 {
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177 return data_.hasRescale_;
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178 }
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179
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180 double GetRescaleIntercept() const;
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181
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182 double GetRescaleSlope() const;
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183
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184 size_t GetWindowingPresetsCount() const;
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185
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186 float GetWindowingPresetCenter(size_t i) const;
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187
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188 float GetWindowingPresetWidth(size_t i) const;
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189
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190 void GetWindowingPresetsUnion(float& center,
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191 float& width) const;
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192
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193 Orthanc::PixelFormat GetExpectedPixelFormat() const;
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194
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195 Orthanc::ImageAccessor* ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const;
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196
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197 TextureBaseSceneLayer* CreateTexture(const Orthanc::ImageAccessor& pixelData) const;
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198
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199 LookupTableTextureSceneLayer* CreateLookupTableTexture(const Orthanc::ImageAccessor& pixelData) const;
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200
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201 bool HasIndexInSeries() const
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202 {
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203 return data_.hasIndexInSeries_;
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204 }
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205
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206 unsigned int GetIndexInSeries() const;
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207
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208 const std::string& GetDoseUnits() const
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209 {
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210 return data_.doseUnits_;
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211 }
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212
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213 void SetDoseGridScaling(double value)
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214 {
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215 data_.doseGridScaling_ = value;
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216 }
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217
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218 double GetDoseGridScaling() const
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219 {
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220 return data_.doseGridScaling_;
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221 }
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222
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223 double ApplyRescale(double value) const;
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224
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225 // Required for RT-DOSE
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226 bool ComputeRegularSpacing(double& target) const;
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227
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228 const std::string& GetFrameOfReferenceUid() const
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229 {
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230 return data_.frameOfReferenceUid_;
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231 }
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232 };
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233 }