Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Toolbox/DicomStructureSet.h @ 1899:917500c46fe0
moved the Platform folder from the Applications folder to the Stone library itself
author | Alain Mazy <am@osimis.io> |
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date | Sat, 29 Jan 2022 12:47:32 +0100 |
parents | a5e54bd87b25 |
children | 738814c24574 |
rev | line source |
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0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
0 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
47 | 10 * as published by the Free Software Foundation, either version 3 of |
11 * the License, or (at your option) any later version. | |
0 | 12 * |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * Lesser General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
0 | 21 **/ |
22 | |
23 | |
24 #pragma once | |
25 | |
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26 #include "../OrthancStone.h" |
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27 |
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28 #if !defined(ORTHANC_ENABLE_DCMTK) |
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29 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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30 #endif |
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31 |
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32 #include "CoordinateSystem3D.h" |
131 | 33 #include "Extent2D.h" |
1504 | 34 #include "OrthancDatasets/FullOrthancDataset.h" |
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35 #include "../Scene2D/Color.h" |
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36 #include "../Scene2D/PolylineSceneLayer.h" |
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37 #include "../Scene2D/ScenePoint2D.h" |
0 | 38 |
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39 #if ORTHANC_ENABLE_DCMTK == 1 |
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40 # include <DicomParsing/ParsedDicomFile.h> |
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41 #endif |
0 | 42 |
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43 |
0 | 44 #include <list> |
45 | |
46 namespace OrthancStone | |
47 { | |
48 class DicomStructureSet : public boost::noncopyable | |
49 { | |
50 private: | |
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51 struct ReferencedSlice |
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52 { |
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53 std::string seriesInstanceUid_; |
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54 CoordinateSystem3D geometry_; |
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55 double thickness_; |
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56 |
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57 ReferencedSlice() |
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58 { |
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59 } |
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60 |
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61 ReferencedSlice(const std::string& seriesInstanceUid, |
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62 const CoordinateSystem3D& geometry, |
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63 double thickness) : |
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64 seriesInstanceUid_(seriesInstanceUid), |
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65 geometry_(geometry), |
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66 thickness_(thickness) |
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67 { |
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68 } |
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69 }; |
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70 |
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71 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
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72 |
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73 typedef std::vector<Vector> Points; |
0 | 74 |
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75 class Polygon |
0 | 76 { |
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77 private: |
131 | 78 std::string sopInstanceUid_; |
79 bool hasSlice_; | |
80 CoordinateSystem3D geometry_; | |
81 double projectionAlongNormal_; | |
82 double sliceThickness_; // In millimeters | |
83 Points points_; | |
84 Extent2D extent_; | |
0 | 85 |
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86 bool IsPointOnSliceIfAny(const Vector& v) const; |
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87 |
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88 public: |
1571 | 89 explicit Polygon(const std::string& sopInstanceUid) : |
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90 sopInstanceUid_(sopInstanceUid), |
1571 | 91 hasSlice_(false), |
92 projectionAlongNormal_(0), | |
93 sliceThickness_(0) | |
122
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94 { |
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95 } |
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96 |
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97 void Reserve(size_t n) |
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98 { |
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99 points_.reserve(n); |
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100 } |
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101 |
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102 void AddPoint(const Vector& v); |
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103 |
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104 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
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105 |
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106 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
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107 |
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108 const Vector& GetGeometryOrigin() const |
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109 { |
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110 return geometry_.GetOrigin(); |
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111 } |
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112 |
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113 const std::string& GetSopInstanceUid() const |
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114 { |
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115 return sopInstanceUid_; |
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116 } |
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117 |
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118 const Points& GetPoints() const |
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119 { |
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120 return points_; |
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121 } |
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123 double GetSliceThickness() const |
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124 { |
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125 return sliceThickness_; |
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126 } |
131 | 127 |
128 bool Project(double& x1, | |
129 double& y1, | |
130 double& x2, | |
131 double& y2, | |
132 const CoordinateSystem3D& slice) const; | |
0 | 133 }; |
134 | |
135 typedef std::list<Polygon> Polygons; | |
136 | |
137 struct Structure | |
138 { | |
139 std::string name_; | |
140 std::string interpretation_; | |
141 Polygons polygons_; | |
142 uint8_t red_; | |
143 uint8_t green_; | |
144 uint8_t blue_; | |
145 }; | |
146 | |
147 typedef std::vector<Structure> Structures; | |
148 | |
122
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149 Structures structures_; |
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150 ReferencedSlices referencedSlices_; |
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151 Vector estimatedNormal_; |
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152 double estimatedSliceThickness_; |
0 | 153 |
1504 | 154 void Setup(const IDicomDataset& dataset); |
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155 |
0 | 156 const Structure& GetStructure(size_t index) const; |
157 | |
125 | 158 Structure& GetStructure(size_t index); |
159 | |
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160 bool ProjectStructure(std::vector< std::vector<ScenePoint2D> >& chains, |
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161 const Structure& structure, |
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162 const CoordinateSystem3D& slice) const; |
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163 |
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164 void EstimateGeometry(); |
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165 |
0 | 166 public: |
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167 explicit DicomStructureSet(const FullOrthancDataset& instance) |
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168 { |
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169 Setup(instance); |
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170 } |
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172 #if ORTHANC_ENABLE_DCMTK == 1 |
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173 explicit DicomStructureSet(Orthanc::ParsedDicomFile& instance); |
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174 #endif |
0 | 175 |
794 | 176 size_t GetStructuresCount() const |
0 | 177 { |
178 return structures_.size(); | |
179 } | |
180 | |
181 Vector GetStructureCenter(size_t index) const; | |
182 | |
183 const std::string& GetStructureName(size_t index) const; | |
184 | |
185 const std::string& GetStructureInterpretation(size_t index) const; | |
186 | |
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187 Color GetStructureColor(size_t index) const; |
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188 |
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189 void GetReferencedInstances(std::set<std::string>& instances) const; |
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190 |
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191 void AddReferencedSlice(const std::string& sopInstanceUid, |
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192 const std::string& seriesInstanceUid, |
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193 const CoordinateSystem3D& geometry, |
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194 double thickness); |
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195 |
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196 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
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197 |
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198 void CheckReferencedSlices(); |
0 | 199 |
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200 Vector GetNormal() const; |
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201 |
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202 bool ProjectStructure(std::vector< std::vector<ScenePoint2D> >& chains, |
1165 | 203 size_t index, |
204 const CoordinateSystem3D& slice) const | |
0 | 205 { |
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206 return ProjectStructure(chains, GetStructure(index), slice); |
0 | 207 } |
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208 |
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209 void ProjectOntoLayer(PolylineSceneLayer& layer, |
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210 const CoordinateSystem3D& plane, |
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211 size_t structureIndex, |
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212 const Color& color) const; |
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213 |
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214 void ProjectOntoLayer(PolylineSceneLayer& layer, |
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215 const CoordinateSystem3D& plane, |
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216 size_t structureIndex) const |
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217 { |
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218 ProjectOntoLayer(layer, plane, structureIndex, GetStructureColor(structureIndex)); |
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219 } |
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220 |
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221 void GetStructurePoints(std::list< std::vector<Vector> >& target, |
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222 size_t structureIndex, |
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223 const std::string& sopInstanceUid) const; |
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224 |
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225 const Vector& GetEstimatedNormal() const |
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226 { |
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227 return estimatedNormal_; |
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228 } |
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229 |
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230 const double GetEstimatedSliceThickness() const |
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231 { |
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232 return estimatedSliceThickness_; |
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233 } |
0 | 234 }; |
235 } |