Mercurial > hg > orthanc-stone
annotate Framework/Toolbox/DicomStructureSet.h @ 1213:86a8266b8888 broker
moving the scene from IViewport to ViewportController
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 04 Dec 2019 17:54:10 +0100 |
parents | 9c8f557ea799 |
children | 0ca50d275b9a |
rev | line source |
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0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
439 | 5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
47 | 8 * modify it under the terms of the GNU Affero General Public License |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
47 | 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
0 | 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
19 **/ | |
20 | |
21 | |
22 #pragma once | |
23 | |
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24 #if !defined(ORTHANC_ENABLE_DCMTK) |
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25 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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26 #endif |
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27 |
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28 #include "DicomStructureSetUtils.h" |
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29 #include "CoordinateSystem3D.h" |
131 | 30 #include "Extent2D.h" |
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31 #include "../Scene2D/Color.h" |
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32 #include "../Scene2D/PolylineSceneLayer.h" |
0 | 33 |
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34 #if ORTHANC_ENABLE_DCMTK == 1 |
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35 # include <Core/DicomParsing/ParsedDicomFile.h> |
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36 #endif |
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37 |
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38 //#define USE_BOOST_UNION_FOR_POLYGONS 1 |
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39 |
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40 #include <Plugins/Samples/Common/FullOrthancDataset.h> |
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41 |
0 | 42 #include <list> |
43 | |
44 namespace OrthancStone | |
45 { | |
46 class DicomStructureSet : public boost::noncopyable | |
47 { | |
48 private: | |
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49 struct ReferencedSlice |
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50 { |
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51 std::string seriesInstanceUid_; |
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52 CoordinateSystem3D geometry_; |
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53 double thickness_; |
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54 |
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55 ReferencedSlice() |
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56 { |
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57 } |
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58 |
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59 ReferencedSlice(const std::string& seriesInstanceUid, |
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60 const CoordinateSystem3D& geometry, |
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61 double thickness) : |
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62 seriesInstanceUid_(seriesInstanceUid), |
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63 geometry_(geometry), |
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64 thickness_(thickness) |
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65 { |
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66 } |
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67 }; |
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68 |
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69 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
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70 |
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71 typedef std::vector<Vector> Points; |
0 | 72 |
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73 class Polygon |
0 | 74 { |
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75 private: |
131 | 76 std::string sopInstanceUid_; |
77 bool hasSlice_; | |
78 CoordinateSystem3D geometry_; | |
79 double projectionAlongNormal_; | |
80 double sliceThickness_; // In millimeters | |
81 Points points_; | |
82 Extent2D extent_; | |
0 | 83 |
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84 void CheckPointIsOnSlice(const Vector& v) const; |
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85 bool IsPointOnSliceIfAny(const Vector& v) const; |
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86 |
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87 public: |
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88 Polygon(const std::string& sopInstanceUid) : |
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89 sopInstanceUid_(sopInstanceUid), |
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90 hasSlice_(false) |
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91 { |
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92 } |
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93 |
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94 void Reserve(size_t n) |
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95 { |
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96 points_.reserve(n); |
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97 } |
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98 |
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99 void AddPoint(const Vector& v); |
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100 |
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101 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
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102 |
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103 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
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104 |
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105 const Vector& GetGeometryOrigin() const |
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106 { |
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107 return geometry_.GetOrigin(); |
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108 } |
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109 |
122
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110 const std::string& GetSopInstanceUid() const |
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111 { |
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112 return sopInstanceUid_; |
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113 } |
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114 |
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115 const Points& GetPoints() const |
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116 { |
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117 return points_; |
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118 } |
126
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119 |
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120 double GetSliceThickness() const |
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121 { |
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122 return sliceThickness_; |
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123 } |
131 | 124 |
125 bool Project(double& x1, | |
126 double& y1, | |
127 double& x2, | |
128 double& y2, | |
129 const CoordinateSystem3D& slice) const; | |
0 | 130 }; |
131 | |
132 typedef std::list<Polygon> Polygons; | |
133 | |
134 struct Structure | |
135 { | |
136 std::string name_; | |
137 std::string interpretation_; | |
138 Polygons polygons_; | |
139 uint8_t red_; | |
140 uint8_t green_; | |
141 uint8_t blue_; | |
142 }; | |
143 | |
144 typedef std::vector<Structure> Structures; | |
145 | |
122
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146 Structures structures_; |
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147 ReferencedSlices referencedSlices_; |
0 | 148 |
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149 void Setup(const OrthancPlugins::IDicomDataset& dataset); |
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150 |
0 | 151 const Structure& GetStructure(size_t index) const; |
152 | |
125 | 153 Structure& GetStructure(size_t index); |
154 | |
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155 bool ProjectStructure( |
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156 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
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157 std::vector< std::vector<Point2D> >& polygons, |
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158 #else |
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159 std::vector< std::pair<Point2D, Point2D> >& segments, |
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160 #endif |
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161 const Structure& structure, |
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162 const CoordinateSystem3D& slice) const; |
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163 |
0 | 164 public: |
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165 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance) |
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166 { |
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167 Setup(instance); |
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168 } |
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169 |
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170 #if ORTHANC_ENABLE_DCMTK == 1 |
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171 DicomStructureSet(Orthanc::ParsedDicomFile& instance); |
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172 #endif |
0 | 173 |
794 | 174 size_t GetStructuresCount() const |
0 | 175 { |
176 return structures_.size(); | |
177 } | |
178 | |
179 Vector GetStructureCenter(size_t index) const; | |
180 | |
181 const std::string& GetStructureName(size_t index) const; | |
182 | |
183 const std::string& GetStructureInterpretation(size_t index) const; | |
184 | |
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185 Color GetStructureColor(size_t index) const; |
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186 |
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187 // TODO - remove |
0 | 188 void GetStructureColor(uint8_t& red, |
189 uint8_t& green, | |
190 uint8_t& blue, | |
191 size_t index) const; | |
192 | |
122
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193 void GetReferencedInstances(std::set<std::string>& instances); |
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194 |
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195 void AddReferencedSlice(const std::string& sopInstanceUid, |
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196 const std::string& seriesInstanceUid, |
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197 const CoordinateSystem3D& geometry, |
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198 double thickness); |
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199 |
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200 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
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201 |
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202 void CheckReferencedSlices(); |
0 | 203 |
122
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204 Vector GetNormal() const; |
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205 |
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206 #if USE_BOOST_UNION_FOR_POLYGONS == 1 |
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207 bool ProjectStructure(std::vector< std::vector<Point2D> >& polygons, |
1165 | 208 size_t index, |
209 const CoordinateSystem3D& slice) const | |
0 | 210 { |
125 | 211 return ProjectStructure(polygons, GetStructure(index), slice); |
0 | 212 } |
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213 #else |
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214 bool ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments, |
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215 size_t index, |
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216 const CoordinateSystem3D& slice) const |
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217 { |
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218 return ProjectStructure(segments, GetStructure(index), slice); |
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219 } |
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220 #endif |
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221 |
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222 void ProjectOntoLayer(PolylineSceneLayer& layer, |
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223 const CoordinateSystem3D& plane, |
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224 size_t structureIndex, |
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225 const Color& color) const; |
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226 |
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227 void ProjectOntoLayer(PolylineSceneLayer& layer, |
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228 const CoordinateSystem3D& plane, |
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229 size_t structureIndex) const |
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230 { |
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231 ProjectOntoLayer(layer, plane, structureIndex, GetStructureColor(structureIndex)); |
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232 } |
0 | 233 }; |
234 } |