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annotate RenderingPlugin/Sources/Plugin.cpp @ 2124:16c01cc201e7

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updated copyright, as Osimis is not active on Orthanc anymore
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 30 May 2024 17:00:29 +0200
parents c23eef785569
children
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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23 #include "OrthancPluginConnection.h"
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24 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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25
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26 #include "../../OrthancStone/Sources/Toolbox/AffineTransform2D.h"
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27 #include "../../OrthancStone/Sources/Toolbox/DicomInstanceParameters.h"
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28 #include "../../OrthancStone/Sources/Toolbox/DicomStructureSet.h"
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29
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30 #include <Cache/MemoryObjectCache.h>
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31 #include <Images/Image.h>
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32 #include <Images/ImageProcessing.h>
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33 #include <Images/NumpyWriter.h>
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34 #include <Logging.h>
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35 #include <SerializationToolbox.h>
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36 #include <Toolbox.h>
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37
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38 #include <boost/math/constants/constants.hpp>
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39
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40
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41 static const char* const INSTANCES = "Instances";
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42 static const char* const RT_STRUCT_IOD = "1.2.840.10008.5.1.4.1.1.481.3";
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43 static const char* const SOP_CLASS_UID = "0008,0016";
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44 static const char* const STRUCTURES = "Structures";
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45
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46
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47 class DicomStructureCache : public boost::noncopyable
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48 {
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49 private:
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50 class Item : public Orthanc::ICacheable
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51 {
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52 private:
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53 std::unique_ptr<OrthancStone::DicomStructureSet> rtstruct_;
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54
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55 public:
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56 explicit Item(OrthancStone::DicomStructureSet* rtstruct) :
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57 rtstruct_(rtstruct)
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58 {
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59 if (rtstruct == NULL)
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60 {
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61 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
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62 }
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63 }
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64
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65 virtual size_t GetMemoryUsage() const ORTHANC_OVERRIDE
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66 {
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67 return 1;
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68 }
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69
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70 OrthancStone::DicomStructureSet& GetRtStruct() const
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71 {
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72 return *rtstruct_;
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73 }
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74 };
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75
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76 Orthanc::MemoryObjectCache cache_;
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78 DicomStructureCache() // Singleton design pattern
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79 {
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80 }
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81
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82 public:
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83 void Invalidate(const std::string& instanceId)
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84 {
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85 cache_.Invalidate(instanceId);
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86 }
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87
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88 void SetMaximumNumberOfItems(size_t items)
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89 {
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90 cache_.SetMaximumSize(items);
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91 }
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92
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93 static DicomStructureCache& GetSingleton()
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94 {
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95 static DicomStructureCache instance;
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96 return instance;
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97 }
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98
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99 class Accessor : public boost::noncopyable
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100 {
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101 private:
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102 DicomStructureCache& that_;
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103 std::string instanceId_;
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104 Orthanc::MemoryObjectCache::Accessor lock_;
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105 std::unique_ptr<OrthancStone::DicomStructureSet> notCached_;
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106
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107 public:
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108 Accessor(DicomStructureCache& that,
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109 const std::string& instanceId) :
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110 that_(that),
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111 instanceId_(instanceId),
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112 lock_(that.cache_, instanceId, true /* unique, as "GetRtStruct()" is mutable */)
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113 {
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114 if (!lock_.IsValid())
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115 {
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116 OrthancStone::OrthancPluginConnection connection;
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117 OrthancStone::FullOrthancDataset dataset(connection, "/instances/" + instanceId + "/tags?ignore-length=3006-0050");
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118 notCached_.reset(new OrthancStone::DicomStructureSet(dataset));
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119 }
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120 }
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121
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122 ~Accessor()
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123 {
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124 if (!lock_.IsValid())
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125 {
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126 assert(notCached_.get() != NULL);
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127
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128 try
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129 {
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130 that_.cache_.Acquire(instanceId_, new Item(notCached_.release()));
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131 }
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132 catch (Orthanc::OrthancException& e)
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133 {
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134 LOG(ERROR) << "Cannot insert RT-STRUCT into cache: " << e.What();
1885
ddaee6b96501 retrieving rt-struct info
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135 }
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
136 }
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
137 }
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
138
ddaee6b96501 retrieving rt-struct info
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diff changeset
139 const std::string& GetInstanceId() const
ddaee6b96501 retrieving rt-struct info
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diff changeset
140 {
ddaee6b96501 retrieving rt-struct info
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diff changeset
141 return instanceId_;
ddaee6b96501 retrieving rt-struct info
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diff changeset
142 }
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
143
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
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parents: 1889
diff changeset
144 OrthancStone::DicomStructureSet& GetRtStruct() const
1885
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
145 {
1944
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
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parents: 1943
diff changeset
146 if (lock_.IsValid())
1885
ddaee6b96501 retrieving rt-struct info
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diff changeset
147 {
1944
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
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diff changeset
148 return dynamic_cast<Item&>(lock_.GetValue()).GetRtStruct();
1885
ddaee6b96501 retrieving rt-struct info
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149 }
ddaee6b96501 retrieving rt-struct info
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150 else
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
151 {
1944
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
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152 assert(notCached_.get() != NULL);
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
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diff changeset
153 return *notCached_;
1885
ddaee6b96501 retrieving rt-struct info
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diff changeset
154 }
ddaee6b96501 retrieving rt-struct info
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155 }
ddaee6b96501 retrieving rt-struct info
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diff changeset
156 };
ddaee6b96501 retrieving rt-struct info
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diff changeset
157 };
ddaee6b96501 retrieving rt-struct info
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diff changeset
158
ddaee6b96501 retrieving rt-struct info
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parents: 1884
diff changeset
159
1882
4e80b8afd0da numpy in rendering plugin
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parents: 1877
diff changeset
160 static Orthanc::PixelFormat Convert(OrthancPluginPixelFormat format)
4e80b8afd0da numpy in rendering plugin
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161 {
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162 switch (format)
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163 {
4e80b8afd0da numpy in rendering plugin
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164 case OrthancPluginPixelFormat_RGB24:
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165 return Orthanc::PixelFormat_RGB24;
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166
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167 case OrthancPluginPixelFormat_Grayscale8:
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168 return Orthanc::PixelFormat_Grayscale8;
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169
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diff changeset
170 case OrthancPluginPixelFormat_Grayscale16:
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171 return Orthanc::PixelFormat_Grayscale16;
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172
4e80b8afd0da numpy in rendering plugin
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diff changeset
173 case OrthancPluginPixelFormat_SignedGrayscale16:
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174 return Orthanc::PixelFormat_SignedGrayscale16;
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175
4e80b8afd0da numpy in rendering plugin
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parents: 1877
diff changeset
176 default:
4e80b8afd0da numpy in rendering plugin
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177 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
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178 }
4e80b8afd0da numpy in rendering plugin
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179 }
4e80b8afd0da numpy in rendering plugin
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parents: 1877
diff changeset
180
4e80b8afd0da numpy in rendering plugin
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parents: 1877
diff changeset
181
1884
0c6923982fdd rendering options from GET args
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diff changeset
182 static bool ParseBoolean(const std::string& key,
0c6923982fdd rendering options from GET args
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diff changeset
183 const std::string& value)
0c6923982fdd rendering options from GET args
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184 {
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diff changeset
185 bool result;
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diff changeset
186
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parents: 1883
diff changeset
187 if (Orthanc::SerializationToolbox::ParseBoolean(result, value))
0c6923982fdd rendering options from GET args
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diff changeset
188 {
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
189 return result;
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
190 }
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
191 else
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
192 {
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
193 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
194 "Bad value for " + key + ": " + value);
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
195 }
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
196 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
197
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
198
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
199 static double ParseDouble(const std::string& key,
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
200 const std::string& value)
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
201 {
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
202 double result;
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
203
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
204 if (Orthanc::SerializationToolbox::ParseDouble(result, value))
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
205 {
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
206 return result;
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
207 }
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
208 else
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
209 {
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
210 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
211 "Bad value for " + key + ": " + value);
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
212 }
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
213 }
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
214
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
215
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
216 static unsigned int ParseUnsignedInteger(const std::string& key,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
217 const std::string& value)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
218 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
219 uint32_t result;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
220
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
221 if (Orthanc::SerializationToolbox::ParseUnsignedInteger32(result, value))
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
222 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
223 return result;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
224 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
225 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
226 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
227 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
228 "Bad value for " + key + ": " + value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
229 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
230 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
231
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
232
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
233
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
234 class DataAugmentationParameters : public boost::noncopyable
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
235 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
236 private:
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
237 double angleRadians_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
238 double scaling_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
239 double offsetX_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
240 double offsetY_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
241 bool flipX_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
242 bool flipY_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
243 bool hasResize_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
244 unsigned int targetWidth_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
245 unsigned int targetHeight_;
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
246 bool hasInterpolation_;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
247 OrthancStone::ImageInterpolation interpolation_;
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
248
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
249 void ApplyInternal(Orthanc::ImageAccessor& target,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
250 const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
251 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
252 if (source.GetWidth() == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
253 source.GetHeight() == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
254 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
255 Orthanc::ImageProcessing::Set(target, 0); // Clear the image
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
256 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
257 else if (target.GetWidth() == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
258 target.GetHeight() == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
259 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
260 // Nothing to do
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
261 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
262 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
263 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
264 OrthancStone::AffineTransform2D transform = ComputeTransform(source.GetWidth(), source.GetHeight());
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
265
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
266 OrthancStone::ImageInterpolation interpolation;
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
267
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
268 if (hasInterpolation_)
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
269 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
270 interpolation = interpolation_;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
271 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
272 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
273 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
274 // Bilinear interpolation for color images is not implemented yet
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
275 interpolation = OrthancStone::ImageInterpolation_Nearest;
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276 }
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277 else
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278 {
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279 interpolation = OrthancStone::ImageInterpolation_Bilinear;
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280 }
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281
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282 transform.Apply(target, source, interpolation, true /* clear */);
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283 }
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284 }
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diff changeset
285
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286
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287 Orthanc::ImageAccessor* ApplyUnchecked(const Orthanc::ImageAccessor& source)
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288 {
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289 std::unique_ptr<Orthanc::ImageAccessor> target;
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290
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291 if (hasResize_)
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292 {
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293 target.reset(new Orthanc::Image(source.GetFormat(), targetWidth_, targetHeight_, false));
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294 }
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295 else
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296 {
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297 target.reset(new Orthanc::Image(source.GetFormat(), source.GetWidth(), source.GetHeight(), false));
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298 }
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299
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300 ApplyInternal(*target, source);
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301 return target.release();
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302 }
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303
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304
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305 public:
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306 DataAugmentationParameters()
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307 {
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308 Clear();
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309 }
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310
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311
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312 void Clear()
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313 {
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314 angleRadians_ = 0;
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315 scaling_ = 1;
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316 offsetX_ = 0;
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317 offsetY_ = 0;
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318 flipX_ = false;
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319 flipY_ = false;
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320 hasResize_ = false;
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321 targetWidth_ = 0;
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322 targetHeight_ = 0;
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
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323 hasInterpolation_ = false;
1944
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
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324 interpolation_ = OrthancStone::ImageInterpolation_Nearest;
1887
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325 }
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326
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327
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328 OrthancStone::AffineTransform2D ComputeTransform(unsigned int sourceWidth,
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329 unsigned int sourceHeight) const
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330 {
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331 unsigned int w = (hasResize_ ? targetWidth_ : sourceWidth);
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332 unsigned int h = (hasResize_ ? targetHeight_ : sourceHeight);
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333
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334 if (w == 0 ||
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335 h == 0 ||
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336 sourceWidth == 0 ||
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337 sourceHeight == 0)
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338 {
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339 // Division by zero
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340 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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341 }
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342
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343 double r = std::min(static_cast<double>(w) / static_cast<double>(sourceWidth),
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344 static_cast<double>(h) / static_cast<double>(sourceHeight));
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diff changeset
345
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diff changeset
346 OrthancStone::AffineTransform2D resize = OrthancStone::AffineTransform2D::Combine(
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347 OrthancStone::AffineTransform2D::CreateOffset(static_cast<double>(w) / 2.0,
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348 static_cast<double>(h) / 2.0),
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diff changeset
349 OrthancStone::AffineTransform2D::CreateScaling(r, r));
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diff changeset
350
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diff changeset
351 OrthancStone::AffineTransform2D dataAugmentation = OrthancStone::AffineTransform2D::Combine(
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diff changeset
352 OrthancStone::AffineTransform2D::CreateScaling(scaling_, scaling_),
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diff changeset
353 OrthancStone::AffineTransform2D::CreateOffset(offsetX_, offsetY_),
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
354 OrthancStone::AffineTransform2D::CreateRotation(angleRadians_),
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
355 OrthancStone::AffineTransform2D::CreateOffset(-static_cast<double>(sourceWidth) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
356 -static_cast<double>(sourceHeight) / 2.0),
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
357 OrthancStone::AffineTransform2D::CreateFlip(flipX_, flipY_, sourceWidth, sourceHeight));
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parents: 1886
diff changeset
358
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
359 return OrthancStone::AffineTransform2D::Combine(resize, dataAugmentation);
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diff changeset
360 }
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parents: 1886
diff changeset
361
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
362
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
363 bool ParseParameter(const std::string& key,
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diff changeset
364 const std::string& value)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
365 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
366 if (key == "angle")
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
367 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
368 double angle = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
369 angleRadians_ = angle / 180.0 * boost::math::constants::pi<double>();
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parents: 1886
diff changeset
370 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
371 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
372 else if (key == "scaling")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
373 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
374 scaling_ = ParseDouble(key, value);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
375 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
376 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
377 else if (key == "offset-x")
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
378 {
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parents: 1886
diff changeset
379 offsetX_ = ParseDouble(key, value);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
380 return true;
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parents: 1886
diff changeset
381 }
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parents: 1886
diff changeset
382 else if (key == "offset-y")
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
383 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
384 offsetY_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
385 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
386 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
387 else if (key == "flip-x")
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
388 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
389 flipX_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
390 return true;
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parents: 1886
diff changeset
391 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
392 else if (key == "flip-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
393 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
394 flipY_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
395 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
396 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
397 else if (key == "resize")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
398 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
399 std::vector<std::string> tokens;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
400 Orthanc::Toolbox::TokenizeString(tokens, value, ',');
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
401 if (tokens.size() != 2)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
402 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
403 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
404 "Must provide two integers separated by commas in " + key + ": " + value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
405 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
406 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
407 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
408 targetWidth_ = ParseUnsignedInteger(key, tokens[0]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
409 targetHeight_ = ParseUnsignedInteger(key, tokens[1]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
410 hasResize_ = true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
411 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
412 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
413 }
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
414 else if (key == "interpolation")
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
415 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
416 if (value == "nearest")
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
417 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
418 interpolation_ = OrthancStone::ImageInterpolation_Nearest;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
419 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
420 else if (value == "bilinear")
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
421 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
422 interpolation_ = OrthancStone::ImageInterpolation_Bilinear;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
423 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
424 else
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
425 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
426 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
427 "Unknown interpolation (must be \"nearest\" or \"bilinear\"): " + value);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
428 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
429
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
430 hasInterpolation_ = true;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
431 return true;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
432 }
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
433 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
434 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
435 return false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
436 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
437 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
438
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
439
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
440 Orthanc::ImageAccessor* Apply(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
441 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
442 if (source.GetFormat() != Orthanc::PixelFormat_RGB24 &&
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
443 source.GetFormat() != Orthanc::PixelFormat_Float32)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
444 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
445 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
446 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
447 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
448 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
449 return ApplyUnchecked(source);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
450 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
451 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
452
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
453
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
454 Orthanc::ImageAccessor* ApplyBinaryMask(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
455 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
456 if (source.GetFormat() != Orthanc::PixelFormat_Grayscale8)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
457 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
458 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
459 "A segmentation mask should be a grayscale image");
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
460 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
461 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
462 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
463 std::unique_ptr<Orthanc::ImageAccessor> target(ApplyUnchecked(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
464
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
465 const unsigned int h = target->GetHeight();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
466 const unsigned int w = target->GetWidth();
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
467
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
468 // Apply thresholding to get back a binary image
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
469 for (unsigned int y = 0; y < h; y++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
470 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
471 uint8_t* p = reinterpret_cast<uint8_t*>(target->GetRow(y));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
472 for (unsigned int x = 0; x < w; x++, p++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
473 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
474 if (*p < 128)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
475 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
476 *p = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
477 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
478 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
479 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
480 *p = 255;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
481 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
482 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
483 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
484
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
485 return target.release();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
486 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
487 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
488 };
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
489
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
490
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
491 static OrthancStone::DicomInstanceParameters* GetInstanceParameters(const std::string& orthancId)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
492 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
493 OrthancPlugins::MemoryBuffer tags;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
494 if (!tags.RestApiGet("/instances/" + orthancId + "/tags", false))
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
495 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
496 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
497 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
498
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
499 Json::Value json;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
500 tags.ToJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
501
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
502 Orthanc::DicomMap m;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
503 m.FromDicomAsJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
504
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
505 return new OrthancStone::DicomInstanceParameters(m);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
506 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
507
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
508
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
509 static void AnswerNumpyImage(OrthancPluginRestOutput* output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
510 const Orthanc::ImageAccessor& image,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
511 bool compress)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
512 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
513 std::string answer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
514 Orthanc::NumpyWriter writer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
515 writer.SetCompressed(compress);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
516 Orthanc::IImageWriter::WriteToMemory(writer, answer, image);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
517
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
518 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
519 answer.c_str(), answer.size(), "application/octet-stream");
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
520 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
521
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
522
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
523 static void RenderNumpyFrame(OrthancPluginRestOutput* output,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
524 const char* url,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
525 const OrthancPluginHttpRequest* request)
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
526 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
527 DataAugmentationParameters dataAugmentation;
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
528 bool compress = false;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
529
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
530 for (uint32_t i = 0; i < request->getCount; i++)
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
531 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
532 std::string key(request->getKeys[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
533 std::string value(request->getValues[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
534
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
535 if (!dataAugmentation.ParseParameter(key, value))
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
536 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
537 if (key == "compress")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
538 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
539 compress = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
540 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
541 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
542 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
543 LOG(WARNING) << "Unsupported option for data augmentation: " << key;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
544 }
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
545 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
546 }
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
547
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
548 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(request->groups[0]));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
549
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
550 OrthancPlugins::MemoryBuffer dicom;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
551 dicom.GetDicomInstance(request->groups[0]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
552
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
553 unsigned int frame = boost::lexical_cast<unsigned int>(request->groups[1]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
554
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
555 OrthancPlugins::OrthancImage image;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
556 image.DecodeDicomImage(dicom.GetData(), dicom.GetSize(), frame);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
557
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
558 Orthanc::ImageAccessor source;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
559 source.AssignReadOnly(Convert(image.GetPixelFormat()), image.GetWidth(), image.GetHeight(),
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
560 image.GetPitch(), image.GetBuffer());
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
561
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
562 std::unique_ptr<Orthanc::ImageAccessor> modified;
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
563
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
564 if (parameters->GetSopClassUid() == OrthancStone::SopClassUid_DicomSeg)
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
565 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
566 modified.reset(dataAugmentation.ApplyBinaryMask(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
567 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
568 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
569 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
570 modified.reset(dataAugmentation.Apply(source));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
571 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
572 else
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
573 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
574 std::unique_ptr<Orthanc::ImageAccessor> converted(parameters->ConvertToFloat(source));
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
575 assert(converted.get() != NULL);
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
576
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
577 modified.reset(dataAugmentation.Apply(*converted));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
578 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
579
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
580 assert(modified.get() != NULL);
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
581 AnswerNumpyImage(output, *modified, compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
582 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
583
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
584
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
585 static bool IsRtStruct(const std::string& instanceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
586 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
587 std::string s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
588 if (OrthancPlugins::RestApiGetString(s, "/instances/" + instanceId + "/content/" + SOP_CLASS_UID, false) &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
589 !s.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
590 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
591 if (s[s.size() - 1] == '\0') // Deal with DICOM padding
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
592 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
593 s.resize(s.size() - 1);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
594 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
595
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
596 return s == RT_STRUCT_IOD;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
597 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
598 else
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
599 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
600 return false;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
601 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
602 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
603
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
604
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
605 static void ListRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
606 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
607 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
608 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
609 // This is a quick version of "/tools/find" on "SOPClassUID" (the
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
610 // latter would load all the DICOM files from disk)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
611
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
612 Json::Value series;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
613 OrthancPlugins::RestApiGet(series, "/series?expand", false);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
614
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
615 if (series.type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
616 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
617 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
618 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
619
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
620 Json::Value answer = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
621
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
622 for (Json::Value::ArrayIndex i = 0; i < series.size(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
623 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
624 if (series[i].type() != Json::objectValue ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
625 !series[i].isMember(INSTANCES) ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
626 series[i][INSTANCES].type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
627 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
628 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
629 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
630
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
631 const Json::Value& instances = series[i][INSTANCES];
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
632
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
633 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
634 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
635 if (instances[j].type() != Json::stringValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
636 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
637 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
638 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
639 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
640
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
641 if (instances.size() > 0 &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
642 IsRtStruct(instances[0].asString()))
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
643 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
644 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
645 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
646 answer.append(instances[j].asString());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
647 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
648 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
649 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
650
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
651 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
652 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
653 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
654
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
655
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
656 static void GetRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
657 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
658 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
659 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
660 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
661
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
662 Json::Value answer;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
663 answer[STRUCTURES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
664
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
665 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
666 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
667 Json::Value color = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
668 color.append(accessor.GetRtStruct().GetStructureColor(i).GetRed());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
669 color.append(accessor.GetRtStruct().GetStructureColor(i).GetGreen());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
670 color.append(accessor.GetRtStruct().GetStructureColor(i).GetBlue());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
671
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
672 Json::Value structure;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
673 structure["Name"] = accessor.GetRtStruct().GetStructureName(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
674 structure["Interpretation"] = accessor.GetRtStruct().GetStructureInterpretation(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
675 structure["Color"] = color;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
676
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
677 answer[STRUCTURES].append(structure);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
678 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
679
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
680 std::set<std::string> sopInstanceUids;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
681 accessor.GetRtStruct().GetReferencedInstances(sopInstanceUids);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
682
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
683 answer[INSTANCES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
684 for (std::set<std::string>::const_iterator it = sopInstanceUids.begin(); it != sopInstanceUids.end(); ++it)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
685 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
686 OrthancPlugins::OrthancString s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
687 s.Assign(OrthancPluginLookupInstance(OrthancPlugins::GetGlobalContext(), it->c_str()));
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
688
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
689 std::string t;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
690 s.ToString(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
691
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
692 answer[INSTANCES].append(t);
1944
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1943
diff changeset
693 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
694
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
695 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
696 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
697 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
698
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
699
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
700
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
701 static void RenderRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
702 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
703 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
704 {
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
705 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
706 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
707 private:
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
708 Orthanc::Image image_;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
709
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
710 public:
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
711 XorFiller(unsigned int width,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
712 unsigned int height) :
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
713 image_(Orthanc::PixelFormat_Grayscale8, width, height, false)
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
714 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
715 Orthanc::ImageProcessing::Set(image_, 0);
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
716 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
717
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
718 Orthanc::ImageAccessor& GetImage()
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
719 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
720 return image_;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
721 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
722
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
723 virtual void Fill(int y,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
724 int x1,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
725 int x2) ORTHANC_OVERRIDE
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
726 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
727 assert(x1 <= x2);
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
728
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
729 if (y >= 0 &&
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
730 y < static_cast<int>(image_.GetHeight()))
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
731 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
732 x1 = std::max(x1, 0);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
733 x2 = std::min(x2, static_cast<int>(image_.GetWidth()) - 1);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
734
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
735 uint8_t* p = reinterpret_cast<uint8_t*>(image_.GetRow(y)) + x1;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
736
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
737 for (int i = x1; i <= x2; i++, p++)
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
738 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
739 *p = (*p ^ 0xff);
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
740 }
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
741 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
742 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
743 };
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
744
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
745
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
746 class HorizontalSegment
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
747 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
748 private:
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
749 int y_;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
750 int x1_;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
751 int x2_;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
752
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
753 public:
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
754 HorizontalSegment(int y,
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
755 int x1,
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
756 int x2) :
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
757 y_(y),
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
758 x1_(std::min(x1, x2)),
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
759 x2_(std::max(x1, x2))
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
760 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
761 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
762
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
763 int GetY() const
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
764 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
765 return y_;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
766 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
767
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
768 int GetX1() const
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
769 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
770 return x1_;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
771 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
772
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
773 int GetX2() const
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
774 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
775 return x2_;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
776 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
777
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
778 void Fill(Orthanc::ImageAccessor& image) const
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
779 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
780 assert(x1_ <= x2_);
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
781
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
782 if (y_ >= 0 &&
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
783 y_ < static_cast<int>(image.GetHeight()))
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
784 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
785 int a = std::max(x1_, 0);
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
786 int b = std::min(x2_, static_cast<int>(image.GetWidth()) - 1);
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
787
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
788 uint8_t* p = reinterpret_cast<uint8_t*>(image.GetRow(y_)) + a;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
789
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
790 for (int i = a; i <= b; i++, p++)
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
791 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
792 *p = 0xff;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
793 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
794 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
795 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
796 };
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
797
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
798
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
799 DataAugmentationParameters dataAugmentation;
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
800 std::vector<std::string> structureNames;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
801 std::string instanceId;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
802 bool compress = false;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
803
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
804 for (uint32_t i = 0; i < request->getCount; i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
805 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
806 std::string key(request->getKeys[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
807 std::string value(request->getValues[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
808
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
809 if (!dataAugmentation.ParseParameter(key, value))
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
810 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
811 if (key == "structure")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
812 {
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
813 Orthanc::Toolbox::TokenizeString(structureNames, value, ',');
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
814 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
815 else if (key == "instance")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
816 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
817 instanceId = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
818 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
819 else if (key == "compress")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
820 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
821 compress = ParseBoolean(key, value);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
822 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
823 else
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
824 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
825 LOG(WARNING) << "Unsupported option: " << key;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
826 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
827 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
828 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
829
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
830 if (structureNames.empty())
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
831 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
832 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
833 "Missing option \"structure\" to provide the names of the structures of interest");
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
834 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
835
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
836 if (instanceId.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
837 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
838 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
839 "Missing option \"instance\" to provide the Orthanc identifier of the instance of interest");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
840 }
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
841
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
842 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(instanceId));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
843
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
844 typedef std::list< std::vector<OrthancStone::Vector> > Polygons;
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
845
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
846 Polygons polygons;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
847
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
848 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
849 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
850
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
851 for (size_t i = 0; i < structureNames.size(); i++)
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
852 {
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
853 size_t structureIndex;
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
854 if (accessor.GetRtStruct().LookupStructureName(structureIndex, structureNames[i]))
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
855 {
1945
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
856 Polygons p;
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
857 accessor.GetRtStruct().GetStructurePoints(p, structureIndex, parameters->GetSopInstanceUid());
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
858 polygons.splice(polygons.begin(), p);
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
859 }
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
860 else
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
861 {
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
862 LOG(WARNING) << "Missing structure name \"" << structureNames[i]
98952be6fb97 rendering plugin: rendering of multiple structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1944
diff changeset
863 << "\" in RT-STRUCT: " << parameters->GetSopInstanceUid();
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
864 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
865 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
866 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
867
1895
14c8f339d480 removed redundant definitions Point2D, Point3D and Vector3D from DicomStructureSetUtils.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1894
diff changeset
868 // We use a "XOR" filler for the polygons in order to deal with holes in the RT-STRUCT
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
869 XorFiller filler(parameters->GetWidth(), parameters->GetHeight());
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
870 OrthancStone::AffineTransform2D transform = dataAugmentation.ComputeTransform(parameters->GetWidth(), parameters->GetHeight());
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
871
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
872 std::list<HorizontalSegment> horizontalSegments;
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
873
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
874 for (std::list< std::vector<OrthancStone::Vector> >::const_iterator
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
875 it = polygons.begin(); it != polygons.end(); ++it)
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
876 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
877 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
878 points.reserve(it->size());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
879
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
880 for (size_t i = 0; i < it->size(); i++)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
881 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
882 // The (0.5, 0.5) offset is due to the fact that DICOM
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
883 // coordinates are expressed wrt. the CENTER of the voxels
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
884
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
885 double x, y;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
886 parameters->GetGeometry().ProjectPoint(x, y, (*it) [i]);
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
887 x = x / parameters->GetPixelSpacingX() + 0.5;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
888 y = y / parameters->GetPixelSpacingY() + 0.5;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
890 transform.Apply(x, y);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
891
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
892 points.push_back(Orthanc::ImageProcessing::ImagePoint(std::floor(x), std::floor(y)));
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
893 }
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
894
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
895 Orthanc::ImageProcessing::FillPolygon(filler, points);
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
896
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
897 for (size_t i = 0; i < points.size(); i++)
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
898 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
899 size_t next = (i + 1) % points.size();
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
900 if (points[i].GetY() == points[next].GetY())
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
901 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
902 horizontalSegments.push_back(HorizontalSegment(points[i].GetY(), points[i].GetX(), points[next].GetX()));
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
903 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
904 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
905 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
906
1946
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
907 /**
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
908 * We repeat the filling of the horizontal segments. This is
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
909 * important to deal with horizontal edges that are seen in one
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
910 * direction, then in the reverse direction within the same polygon,
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
911 * which can typically be seen in RT-STRUCT with holes. If this step
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
912 * is not done, only the starting point and the ending point of the
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
913 * segments are drawn.
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
914 **/
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
915 for (std::list<HorizontalSegment>::const_iterator it = horizontalSegments.begin();
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
916 it != horizontalSegments.end(); ++it)
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
917 {
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
918 it->Fill(filler.GetImage());
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
919 }
3c68cdfbdcab rendering plugin: deal with special case of holes in structs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
920
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
921 AnswerNumpyImage(output, filler.GetImage(), compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
922 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
923
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
924
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
925
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
926 OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
927 OrthancPluginResourceType resourceType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
928 const char* resourceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
929 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
930 switch (changeType)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
931 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
932 case OrthancPluginChangeType_Deleted:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
933 if (resourceType == OrthancPluginResourceType_Instance)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
934 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
935 DicomStructureCache::GetSingleton().Invalidate(resourceId);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
936 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
937
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
938 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
939
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
940 case OrthancPluginChangeType_OrthancStarted:
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
941 {
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
942 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9");
1892
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
943 OrthancStone::LinearAlgebra::Print(accessor.GetRtStruct().GetEstimatedNormal());
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
944 printf("Slice thickness: %f\n", accessor.GetRtStruct().GetEstimatedSliceThickness());
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
945 break;
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
946 }
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
947
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
948 default:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
949 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
950 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
951
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
952 return OrthancPluginErrorCode_Success;
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
953 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
954
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
955
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
956 extern "C"
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
957 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
958 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
959 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
960 OrthancPlugins::SetGlobalContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
961
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
962 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
963 Orthanc::Logging::InitializePluginContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
964 #else
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
965 Orthanc::Logging::Initialize(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
966 #endif
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
967
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
968 /* Check the version of the Orthanc core */
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
969 if (OrthancPluginCheckVersion(context) == 0)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
970 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
971 char info[1024];
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
972 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
973 context->orthancVersion,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
974 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
975 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
976 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
977 OrthancPluginLogError(context, info);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
978 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
979 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
980
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
981 try
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
982 {
1944
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1943
diff changeset
983 DicomStructureCache::GetSingleton().SetMaximumNumberOfItems(1024); // Cache up to 1024 RT-STRUCT instances
3daecfa5791c rendering plugin: caching multiple rt-struct in memory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1943
diff changeset
984
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
985 OrthancPlugins::RegisterRestCallback<RenderNumpyFrame>("/stone/instances/([^/]+)/frames/([0-9]+)/numpy", true);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
986 OrthancPlugins::RegisterRestCallback<ListRtStruct>("/stone/rt-struct", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
987 OrthancPlugins::RegisterRestCallback<GetRtStruct>("/stone/rt-struct/([^/]+)/info", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
988 OrthancPlugins::RegisterRestCallback<RenderRtStruct>("/stone/rt-struct/([^/]+)/numpy", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
989 OrthancPluginRegisterOnChangeCallback(context, OnChangeCallback);
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
990 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
991 catch (...)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
992 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
993 OrthancPlugins::LogError("Exception while initializing the Stone Web viewer plugin");
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
994 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
995 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
996
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
997 return 0;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
998 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
999
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1000
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1001 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1002 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1003 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1004
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1005
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1006 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1007 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1008 return PLUGIN_NAME;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1009 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1010
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1011
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1012 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1013 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1014 return PLUGIN_VERSION;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1015 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1016 }