Mercurial > hg > orthanc-stone

annotate RenderingPlugin/Sources/Plugin.cpp @ 1916:bd527bbc34df

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
cppcheck
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sun, 20 Mar 2022 18:23:39 +0100
parents 14c8f339d480
children a601b8abc1cb
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU General Public License as
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * published by the Free Software Foundation, either version 3 of the
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * License, or (at your option) any later version.
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * General Public License for more details.
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU General Public License
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
23 #include "OrthancPluginConnection.h"
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
26 #include "../../OrthancStone/Sources/Toolbox/AffineTransform2D.h"
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
27 #include "../../OrthancStone/Sources/Toolbox/DicomInstanceParameters.h"
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
28 #include "../../OrthancStone/Sources/Toolbox/DicomStructureSet.h"
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
29
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 #include <EmbeddedResources.h>
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
32 #include <Images/Image.h>
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
33 #include <Images/ImageProcessing.h>
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
34 #include <Images/PngWriter.h>
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
35 #include <Images/NumpyWriter.h>
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 #include <Logging.h>
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
37 #include <SerializationToolbox.h>
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
38 #include <Toolbox.h>
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
40 #include <boost/math/constants/constants.hpp>
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
41
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
42
1916
bd527bbc34df cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1895
diff changeset
43 static const char* const INSTANCES = "Instances";
bd527bbc34df cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1895
diff changeset
44 static const char* const RT_STRUCT_IOD = "1.2.840.10008.5.1.4.1.1.481.3";
bd527bbc34df cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1895
diff changeset
45 static const char* const SOP_CLASS_UID = "0008,0016";
bd527bbc34df cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1895
diff changeset
46 static const char* const STRUCTURES = "Structures";
bd527bbc34df cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1895
diff changeset
47
bd527bbc34df cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1895
diff changeset
48
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
49 class DicomStructureCache : public boost::noncopyable
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
50 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
51 private:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
52 boost::mutex mutex_;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
53 std::string instanceId_;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
54 std::unique_ptr<OrthancStone::DicomStructureSet> rtstruct_;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
55
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
56 DicomStructureCache() // Singleton design pattern
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
57 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
58 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
59
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
60 public:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
61 void Invalidate(const std::string& instanceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
62 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
63 boost::mutex::scoped_lock lock(mutex_);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
64
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
65 if (instanceId_ == instanceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
66 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
67 rtstruct_.reset(NULL);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
68 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
69 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
70
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
71 static DicomStructureCache& GetSingleton()
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
72 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
73 static DicomStructureCache instance;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
74 return instance;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
75 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
76
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
77 class Accessor : public boost::noncopyable
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
78 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
79 private:
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
80 boost::mutex::scoped_lock lock_;
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
81 std::string instanceId_;
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
82 OrthancStone::DicomStructureSet* rtstruct_;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
83
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
84 public:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
85 Accessor(DicomStructureCache& that,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
86 const std::string& instanceId) :
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
87 lock_(that.mutex_),
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
88 instanceId_(instanceId),
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
89 rtstruct_(NULL)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
90 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
91 if (that.instanceId_ == instanceId &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
92 that.rtstruct_.get() != NULL)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
93 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
94 rtstruct_ = that.rtstruct_.get();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
95 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
96 else
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
97 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
98 try
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
99 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
100 OrthancStone::OrthancPluginConnection connection;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
101 OrthancStone::FullOrthancDataset dataset(connection, "/instances/" + instanceId + "/tags?ignore-length=3006-0050");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
102 that.rtstruct_.reset(new OrthancStone::DicomStructureSet(dataset));
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
103 that.instanceId_ = instanceId;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
104 rtstruct_ = that.rtstruct_.get();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
105 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
106 catch (Orthanc::OrthancException&)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
107 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
108 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
109 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
110 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
111
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
112 const std::string& GetInstanceId() const
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
113 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
114 return instanceId_;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
115 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
116
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
117 bool IsValid() const
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
118 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
119 return rtstruct_ != NULL;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
120 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
121
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
122 OrthancStone::DicomStructureSet& GetRtStruct() const
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
123 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
124 if (IsValid())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
125 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
126 return *rtstruct_;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
127 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
128 else
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
129 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
130 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
131 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
132 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
133 };
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
134 };
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
135
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
136
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
137 static Orthanc::PixelFormat Convert(OrthancPluginPixelFormat format)
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
138 {
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
139 switch (format)
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
140 {
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
141 case OrthancPluginPixelFormat_RGB24:
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
142 return Orthanc::PixelFormat_RGB24;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
143
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
144 case OrthancPluginPixelFormat_Grayscale8:
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
145 return Orthanc::PixelFormat_Grayscale8;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
146
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
147 case OrthancPluginPixelFormat_Grayscale16:
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
148 return Orthanc::PixelFormat_Grayscale16;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
149
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
150 case OrthancPluginPixelFormat_SignedGrayscale16:
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
151 return Orthanc::PixelFormat_SignedGrayscale16;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
152
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
153 default:
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
154 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
155 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
156 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
157
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
158
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
159 static bool ParseBoolean(const std::string& key,
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
160 const std::string& value)
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
161 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
162 bool result;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
163
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
164 if (Orthanc::SerializationToolbox::ParseBoolean(result, value))
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
165 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
166 return result;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
167 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
168 else
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
169 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
170 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
171 "Bad value for " + key + ": " + value);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
172 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
173 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
174
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
175
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
176 static double ParseDouble(const std::string& key,
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
177 const std::string& value)
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
178 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
179 double result;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
180
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
181 if (Orthanc::SerializationToolbox::ParseDouble(result, value))
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
182 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
183 return result;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
184 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
185 else
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
186 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
187 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
188 "Bad value for " + key + ": " + value);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
189 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
190 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
191
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
192
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
193 static unsigned int ParseUnsignedInteger(const std::string& key,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
194 const std::string& value)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
195 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
196 uint32_t result;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
197
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
198 if (Orthanc::SerializationToolbox::ParseUnsignedInteger32(result, value))
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
199 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
200 return result;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
201 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
202 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
203 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
204 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
205 "Bad value for " + key + ": " + value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
206 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
207 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
208
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
209
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
210
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
211 class DataAugmentationParameters : public boost::noncopyable
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
212 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
213 private:
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
214 double angleRadians_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
215 double scaling_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
216 double offsetX_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
217 double offsetY_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
218 bool flipX_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
219 bool flipY_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
220 bool hasResize_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
221 unsigned int targetWidth_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
222 unsigned int targetHeight_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
223
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
224 void ApplyInternal(Orthanc::ImageAccessor& target,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
225 const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
226 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
227 if (source.GetWidth() == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
228 source.GetHeight() == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
229 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
230 Orthanc::ImageProcessing::Set(target, 0); // Clear the image
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
231 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
232 else if (target.GetWidth() == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
233 target.GetHeight() == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
234 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
235 // Nothing to do
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
236 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
237 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
238 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
239 OrthancStone::AffineTransform2D transform = ComputeTransform(source.GetWidth(), source.GetHeight());
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
240
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
241 OrthancStone::ImageInterpolation interpolation;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
242
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
243 if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
244 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
245 LOG(WARNING) << "Bilinear interpolation for color images is not implemented yet";
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
246 interpolation = OrthancStone::ImageInterpolation_Nearest;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
247 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
248 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
249 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
250 interpolation = OrthancStone::ImageInterpolation_Bilinear;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
251 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
252
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
253 transform.Apply(target, source, interpolation, true /* clear */);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
254 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
255 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
256
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
257
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
258 Orthanc::ImageAccessor* ApplyUnchecked(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
259 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
260 std::unique_ptr<Orthanc::ImageAccessor> target;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
261
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
262 if (hasResize_)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
263 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
264 target.reset(new Orthanc::Image(source.GetFormat(), targetWidth_, targetHeight_, false));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
265 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
266 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
267 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
268 target.reset(new Orthanc::Image(source.GetFormat(), source.GetWidth(), source.GetHeight(), false));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
269 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
270
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
271 ApplyInternal(*target, source);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
272 return target.release();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
273 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
274
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
275
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
276 public:
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
277 DataAugmentationParameters()
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
278 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
279 Clear();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
280 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
281
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
282
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
283 void Clear()
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
284 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
285 angleRadians_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
286 scaling_ = 1;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
287 offsetX_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
288 offsetY_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
289 flipX_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
290 flipY_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
291 hasResize_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
292 targetWidth_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
293 targetHeight_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
294 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
295
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
296
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
297 OrthancStone::AffineTransform2D ComputeTransform(unsigned int sourceWidth,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
298 unsigned int sourceHeight) const
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
299 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
300 unsigned int w = (hasResize_ ? targetWidth_ : sourceWidth);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
301 unsigned int h = (hasResize_ ? targetHeight_ : sourceHeight);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
302
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
303 if (w == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
304 h == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
305 sourceWidth == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
306 sourceHeight == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
307 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
308 // Division by zero
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
309 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
310 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
311
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
312 double r = std::min(static_cast<double>(w) / static_cast<double>(sourceWidth),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
313 static_cast<double>(h) / static_cast<double>(sourceHeight));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
314
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
315 OrthancStone::AffineTransform2D resize = OrthancStone::AffineTransform2D::Combine(
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
316 OrthancStone::AffineTransform2D::CreateOffset(static_cast<double>(w) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
317 static_cast<double>(h) / 2.0),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
318 OrthancStone::AffineTransform2D::CreateScaling(r, r));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
319
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
320 OrthancStone::AffineTransform2D dataAugmentation = OrthancStone::AffineTransform2D::Combine(
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
321 OrthancStone::AffineTransform2D::CreateScaling(scaling_, scaling_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
322 OrthancStone::AffineTransform2D::CreateOffset(offsetX_, offsetY_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
323 OrthancStone::AffineTransform2D::CreateRotation(angleRadians_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
324 OrthancStone::AffineTransform2D::CreateOffset(-static_cast<double>(sourceWidth) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
325 -static_cast<double>(sourceHeight) / 2.0),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
326 OrthancStone::AffineTransform2D::CreateFlip(flipX_, flipY_, sourceWidth, sourceHeight));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
327
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
328 return OrthancStone::AffineTransform2D::Combine(resize, dataAugmentation);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
329 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
330
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
331
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
332 bool ParseParameter(const std::string& key,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
333 const std::string& value)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
334 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
335 if (key == "angle")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
336 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
337 double angle = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
338 angleRadians_ = angle / 180.0 * boost::math::constants::pi<double>();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
339 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
340 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
341 else if (key == "scaling")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
342 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
343 scaling_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
344 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
345 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
346 else if (key == "offset-x")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
347 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
348 offsetX_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
349 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
350 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
351 else if (key == "offset-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
352 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
353 offsetY_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
354 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
355 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
356 else if (key == "flip-x")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
357 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
358 flipX_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
359 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
360 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
361 else if (key == "flip-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
362 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
363 flipY_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
364 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
365 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
366 else if (key == "resize")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
367 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
368 std::vector<std::string> tokens;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
369 Orthanc::Toolbox::TokenizeString(tokens, value, ',');
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
370 if (tokens.size() != 2)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
371 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
372 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
373 "Must provide two integers separated by commas in " + key + ": " + value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
374 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
375 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
376 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
377 targetWidth_ = ParseUnsignedInteger(key, tokens[0]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
378 targetHeight_ = ParseUnsignedInteger(key, tokens[1]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
379 hasResize_ = true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
380 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
381 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
382 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
383 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
384 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
385 return false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
386 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
387 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
388
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
389
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
390 Orthanc::ImageAccessor* Apply(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
391 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
392 if (source.GetFormat() != Orthanc::PixelFormat_RGB24 &&
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
393 source.GetFormat() != Orthanc::PixelFormat_Float32)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
394 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
395 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
396 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
397 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
398 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
399 return ApplyUnchecked(source);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
400 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
401 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
402
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
403
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
404 Orthanc::ImageAccessor* ApplyBinaryMask(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
405 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
406 if (source.GetFormat() != Orthanc::PixelFormat_Grayscale8)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
407 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
408 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
409 "A segmentation mask should be a grayscale image");
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
410 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
411 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
412 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
413 std::unique_ptr<Orthanc::ImageAccessor> target(ApplyUnchecked(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
414
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
415 const unsigned int h = target->GetHeight();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
416 const unsigned int w = target->GetWidth();
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
417
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
418 // Apply thresholding to get back a binary image
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
419 for (unsigned int y = 0; y < h; y++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
420 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
421 uint8_t* p = reinterpret_cast<uint8_t*>(target->GetRow(y));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
422 for (unsigned int x = 0; x < w; x++, p++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
423 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
424 if (*p < 128)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
425 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
426 *p = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
427 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
428 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
429 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
430 *p = 255;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
431 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
432 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
433 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
434
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
435 return target.release();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
436 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
437 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
438 };
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
439
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
440
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
441 static OrthancStone::DicomInstanceParameters* GetInstanceParameters(const std::string& orthancId)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
442 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
443 OrthancPlugins::MemoryBuffer tags;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
444 if (!tags.RestApiGet("/instances/" + orthancId + "/tags", false))
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
445 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
446 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
447 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
448
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
449 Json::Value json;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
450 tags.ToJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
451
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
452 Orthanc::DicomMap m;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
453 m.FromDicomAsJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
454
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
455 return new OrthancStone::DicomInstanceParameters(m);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
456 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
457
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
458
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
459 static void AnswerNumpyImage(OrthancPluginRestOutput* output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
460 const Orthanc::ImageAccessor& image,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
461 bool compress)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
462 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
463 std::string answer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
464 Orthanc::NumpyWriter writer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
465 writer.SetCompressed(compress);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
466 Orthanc::IImageWriter::WriteToMemory(writer, answer, image);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
467
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
468 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
469 answer.c_str(), answer.size(), "application/octet-stream");
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
470 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
471
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
472
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
473 static void RenderNumpyFrame(OrthancPluginRestOutput* output,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
474 const char* url,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
475 const OrthancPluginHttpRequest* request)
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
476 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
477 DataAugmentationParameters dataAugmentation;
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
478 bool compress = false;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
479
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
480 for (uint32_t i = 0; i < request->getCount; i++)
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
481 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
482 std::string key(request->getKeys[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
483 std::string value(request->getValues[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
484
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
485 if (!dataAugmentation.ParseParameter(key, value))
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
486 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
487 if (key == "compress")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
488 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
489 compress = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
490 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
491 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
492 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
493 LOG(WARNING) << "Unsupported option for data augmentation: " << key;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
494 }
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
495 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
496 }
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
497
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
498 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(request->groups[0]));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
499
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
500 OrthancPlugins::MemoryBuffer dicom;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
501 dicom.GetDicomInstance(request->groups[0]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
502
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
503 unsigned int frame = boost::lexical_cast<unsigned int>(request->groups[1]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
504
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
505 OrthancPlugins::OrthancImage image;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
506 image.DecodeDicomImage(dicom.GetData(), dicom.GetSize(), frame);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
507
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
508 Orthanc::ImageAccessor source;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
509 source.AssignReadOnly(Convert(image.GetPixelFormat()), image.GetWidth(), image.GetHeight(),
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
510 image.GetPitch(), image.GetBuffer());
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
511
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
512 std::unique_ptr<Orthanc::ImageAccessor> modified;
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
513
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
514 if (parameters->GetSopClassUid() == OrthancStone::SopClassUid_DicomSeg)
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
515 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
516 modified.reset(dataAugmentation.ApplyBinaryMask(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
517 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
518 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
519 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
520 modified.reset(dataAugmentation.Apply(source));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
521 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
522 else
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
523 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
524 std::unique_ptr<Orthanc::ImageAccessor> converted(parameters->ConvertToFloat(source));
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
525 assert(converted.get() != NULL);
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
526
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
527 modified.reset(dataAugmentation.Apply(*converted));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
528 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
529
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
530 assert(modified.get() != NULL);
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
531 AnswerNumpyImage(output, *modified, compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
532 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
533
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
534
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
535 static bool IsRtStruct(const std::string& instanceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
536 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
537 std::string s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
538 if (OrthancPlugins::RestApiGetString(s, "/instances/" + instanceId + "/content/" + SOP_CLASS_UID, false) &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
539 !s.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
540 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
541 if (s[s.size() - 1] == '\0') // Deal with DICOM padding
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
542 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
543 s.resize(s.size() - 1);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
544 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
545
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
546 return s == RT_STRUCT_IOD;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
547 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
548 else
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
549 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
550 return false;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
551 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
552 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
553
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
554
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
555 static void ListRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
556 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
557 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
558 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
559 // This is a quick version of "/tools/find" on "SOPClassUID" (the
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
560 // latter would load all the DICOM files from disk)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
561
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
562 Json::Value series;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
563 OrthancPlugins::RestApiGet(series, "/series?expand", false);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
564
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
565 if (series.type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
566 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
567 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
568 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
569
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
570 Json::Value answer = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
571
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
572 for (Json::Value::ArrayIndex i = 0; i < series.size(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
573 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
574 if (series[i].type() != Json::objectValue ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
575 !series[i].isMember(INSTANCES) ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
576 series[i][INSTANCES].type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
577 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
578 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
579 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
580
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
581 const Json::Value& instances = series[i][INSTANCES];
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
582
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
583 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
584 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
585 if (instances[j].type() != Json::stringValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
586 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
587 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
588 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
589 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
590
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
591 if (instances.size() > 0 &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
592 IsRtStruct(instances[0].asString()))
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
593 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
594 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
595 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
596 answer.append(instances[j].asString());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
597 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
598 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
599 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
600
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
601 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
602 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
603 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
604
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
605
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
606 static void GetRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
607 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
608 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
609 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
610 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
611
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
612 if (!accessor.IsValid())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
613 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
614 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
615 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
616
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
617 Json::Value answer;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
618 answer[STRUCTURES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
619
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
620 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
621 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
622 Json::Value color = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
623 color.append(accessor.GetRtStruct().GetStructureColor(i).GetRed());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
624 color.append(accessor.GetRtStruct().GetStructureColor(i).GetGreen());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
625 color.append(accessor.GetRtStruct().GetStructureColor(i).GetBlue());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
626
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
627 Json::Value structure;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
628 structure["Name"] = accessor.GetRtStruct().GetStructureName(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
629 structure["Interpretation"] = accessor.GetRtStruct().GetStructureInterpretation(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
630 structure["Color"] = color;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
631
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
632 answer[STRUCTURES].append(structure);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
633 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
634
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
635 std::set<std::string> sopInstanceUids;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
636 accessor.GetRtStruct().GetReferencedInstances(sopInstanceUids);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
637
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
638 answer[INSTANCES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
639 for (std::set<std::string>::const_iterator it = sopInstanceUids.begin(); it != sopInstanceUids.end(); ++it)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
640 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
641 OrthancPlugins::OrthancString s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
642 s.Assign(OrthancPluginLookupInstance(OrthancPlugins::GetGlobalContext(), it->c_str()));
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
643
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
644 std::string t;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
645 s.ToString(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
646
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
647 answer[INSTANCES].append(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
648 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
649
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
650 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
651 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
652 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
653
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
654
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
655
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
656 static void RenderRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
657 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
658 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
659 {
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
660 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
661 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
662 private:
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
663 Orthanc::Image image_;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
664
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
665 public:
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
666 XorFiller(unsigned int width,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
667 unsigned int height) :
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
668 image_(Orthanc::PixelFormat_Grayscale8, width, height, false)
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
669 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
670 Orthanc::ImageProcessing::Set(image_, 0);
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
671 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
672
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
673 const Orthanc::ImageAccessor& GetImage() const
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
674 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
675 return image_;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
676 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
677
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
678 virtual void Fill(int y,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
679 int x1,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
680 int x2) ORTHANC_OVERRIDE
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
681 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
682 assert(x1 > 0 &&
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
683 x1 <= x2 &&
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
684 x2 < static_cast<int>(image_.GetWidth()) &&
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
685 y > 0 &&
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
686 y < static_cast<int>(image_.GetHeight()));
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
687
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
688 uint8_t* p = reinterpret_cast<uint8_t*>(image_.GetRow(y)) + x1;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
689
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
690 for (int i = x1; i <= x2; i++, p++)
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
691 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
692 *p = (*p ^ 0xff);
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
693 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
694 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
695 };
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
696
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
697 DataAugmentationParameters dataAugmentation;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
698 std::string structureName;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
699 std::string instanceId;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
700 bool compress = false;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
701
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
702 for (uint32_t i = 0; i < request->getCount; i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
703 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
704 std::string key(request->getKeys[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
705 std::string value(request->getValues[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
706
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
707 if (!dataAugmentation.ParseParameter(key, value))
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
708 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
709 if (key == "structure")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
710 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
711 structureName = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
712 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
713 else if (key == "instance")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
714 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
715 instanceId = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
716 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
717 else if (key == "compress")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
718 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
719 compress = ParseBoolean(key, value);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
720 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
721 else
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
722 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
723 LOG(WARNING) << "Unsupported option: " << key;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
724 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
725 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
726 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
727
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
728 if (structureName.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
729 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
730 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
731 "Missing option \"structure\" to provide the structure name");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
732 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
733
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
734 if (instanceId.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
735 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
736 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
737 "Missing option \"instance\" to provide the Orthanc identifier of the instance of interest");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
738 }
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
739
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
740 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(instanceId));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
741
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
742 std::list< std::vector<OrthancStone::Vector> > polygons;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
743
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
744 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
745 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
746
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
747 if (!accessor.IsValid())
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
748 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
749 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
750 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
751
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
752 size_t structureIndex;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
753 bool found = false;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
754 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
755 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
756 if (accessor.GetRtStruct().GetStructureName(i) == structureName)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
757 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
758 structureIndex = i;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
759 found = true;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
760 break;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
761 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
762 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
763
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
764 if (!found)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
765 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
766 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem,
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
767 "Unknown structure name: " + structureName);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
768 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
769
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
770 accessor.GetRtStruct().GetStructurePoints(polygons, structureIndex, parameters->GetSopInstanceUid());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
771 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
772
1895
14c8f339d480 removed redundant definitions Point2D, Point3D and Vector3D from DicomStructureSetUtils.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1894
diff changeset
773 // We use a "XOR" filler for the polygons in order to deal with holes in the RT-STRUCT
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
774 XorFiller filler(parameters->GetWidth(), parameters->GetHeight());
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
775 OrthancStone::AffineTransform2D transform = dataAugmentation.ComputeTransform(parameters->GetWidth(), parameters->GetHeight());
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
776
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
777 for (std::list< std::vector<OrthancStone::Vector> >::const_iterator
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
778 it = polygons.begin(); it != polygons.end(); ++it)
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
779 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
780 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
781 points.reserve(it->size());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
782
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
783 for (size_t i = 0; i < it->size(); i++)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
784 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
785 double x, y;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
786 parameters->GetGeometry().ProjectPoint(x, y, (*it) [i]);
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
787 x /= parameters->GetPixelSpacingX();
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
788 y /= parameters->GetPixelSpacingY();
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
789
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
790 transform.Apply(x, y);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
791
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
792 points.push_back(Orthanc::ImageProcessing::ImagePoint(x, y));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
793 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
794
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
795 Orthanc::ImageProcessing::FillPolygon(filler, points);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
796 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
797
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
798 AnswerNumpyImage(output, filler.GetImage(), compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
799 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
800
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
801
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
802
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
803 OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
804 OrthancPluginResourceType resourceType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
805 const char* resourceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
806 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
807 switch (changeType)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
808 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
809 case OrthancPluginChangeType_Deleted:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
810 if (resourceType == OrthancPluginResourceType_Instance)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
811 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
812 DicomStructureCache::GetSingleton().Invalidate(resourceId);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
813 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
814
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
815 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
816
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
817 case OrthancPluginChangeType_OrthancStarted:
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
818 {
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
819 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9");
1892
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
820 OrthancStone::LinearAlgebra::Print(accessor.GetRtStruct().GetEstimatedNormal());
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
821 printf("Slice thickness: %f\n", accessor.GetRtStruct().GetEstimatedSliceThickness());
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
822 break;
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
823 }
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
824
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
825 default:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
826 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
827 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
828
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
829 return OrthancPluginErrorCode_Success;
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
830 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
831
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
832
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
833 extern "C"
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
835 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
836 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
837 OrthancPlugins::SetGlobalContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
838
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
840 Orthanc::Logging::InitializePluginContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
841 #else
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
842 Orthanc::Logging::Initialize(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
843 #endif
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
844
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
845 /* Check the version of the Orthanc core */
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
846 if (OrthancPluginCheckVersion(context) == 0)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
847 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
848 char info[1024];
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
849 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
850 context->orthancVersion,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
851 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
852 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
854 OrthancPluginLogError(context, info);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
855 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
856 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
857
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
858 try
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
859 {
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
860 OrthancPlugins::RegisterRestCallback<RenderNumpyFrame>("/stone/instances/([^/]+)/frames/([0-9]+)/numpy", true);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
861 OrthancPlugins::RegisterRestCallback<ListRtStruct>("/stone/rt-struct", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
862 OrthancPlugins::RegisterRestCallback<GetRtStruct>("/stone/rt-struct/([^/]+)/info", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
863 OrthancPlugins::RegisterRestCallback<RenderRtStruct>("/stone/rt-struct/([^/]+)/numpy", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
864 OrthancPluginRegisterOnChangeCallback(context, OnChangeCallback);
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
865 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
866 catch (...)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
867 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
868 OrthancPlugins::LogError("Exception while initializing the Stone Web viewer plugin");
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
869 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
870 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872 return 0;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
874
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
875
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
877 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
878 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
879
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
880
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
882 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
883 return PLUGIN_NAME;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
884 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
885
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
886
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
887 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
888 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
889 return PLUGIN_VERSION;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
890 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
891 }