Mercurial > hg > orthanc-stone

annotate RenderingPlugin/Sources/Plugin.cpp @ 1890:6ce81914f7e4

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added classes BucketAccumulator1D/2D
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 18 Jan 2022 22:08:55 +0100
parents fe4befc9c2b0
children cdf91ad891a5
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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23 #include "OrthancPluginConnection.h"
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24 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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25
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26 #include "../../OrthancStone/Sources/Toolbox/AffineTransform2D.h"
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27 #include "../../OrthancStone/Sources/Toolbox/DicomInstanceParameters.h"
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28 #include "../../OrthancStone/Sources/Toolbox/DicomStructureSet.h"
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29
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30 #include <EmbeddedResources.h>
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31
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32 #include <Images/Image.h>
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33 #include <Images/ImageProcessing.h>
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34 #include <Images/PngWriter.h>
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35 #include <Images/NumpyWriter.h>
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36 #include <Logging.h>
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37 #include <SerializationToolbox.h>
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38 #include <Toolbox.h>
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39
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40 #include <boost/math/constants/constants.hpp>
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41
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42
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43 class DicomStructureCache : public boost::noncopyable
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44 {
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45 private:
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46 boost::mutex mutex_;
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47 std::string instanceId_;
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48 std::unique_ptr<OrthancStone::DicomStructureSet> rtstruct_;
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49
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50 DicomStructureCache() // Singleton design pattern
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51 {
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52 }
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53
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54 public:
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55 void Invalidate(const std::string& instanceId)
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56 {
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57 boost::mutex::scoped_lock lock(mutex_);
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58
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59 if (instanceId_ == instanceId)
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60 {
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61 rtstruct_.reset(NULL);
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62 }
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63 }
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64
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65 static DicomStructureCache& GetSingleton()
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66 {
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67 static DicomStructureCache instance;
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68 return instance;
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69 }
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70
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71 class Accessor : public boost::noncopyable
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72 {
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73 private:
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74 boost::mutex::scoped_lock lock_;
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75 std::string instanceId_;
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76 OrthancStone::DicomStructureSet* rtstruct_;
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77
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78 public:
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79 Accessor(DicomStructureCache& that,
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80 const std::string& instanceId) :
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81 lock_(that.mutex_),
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82 instanceId_(instanceId),
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83 rtstruct_(NULL)
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84 {
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85 if (that.instanceId_ == instanceId &&
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86 that.rtstruct_.get() != NULL)
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87 {
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88 rtstruct_ = that.rtstruct_.get();
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89 }
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90 else
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91 {
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92 try
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93 {
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94 OrthancStone::OrthancPluginConnection connection;
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95 OrthancStone::FullOrthancDataset dataset(connection, "/instances/" + instanceId + "/tags?ignore-length=3006-0050");
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96 that.rtstruct_.reset(new OrthancStone::DicomStructureSet(dataset));
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97 that.instanceId_ = instanceId;
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98 rtstruct_ = that.rtstruct_.get();
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99 }
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100 catch (Orthanc::OrthancException&)
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101 {
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102 }
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103 }
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104 }
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105
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106 const std::string& GetInstanceId() const
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107 {
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108 return instanceId_;
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109 }
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110
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111 bool IsValid() const
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112 {
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113 return rtstruct_ != NULL;
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114 }
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115
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116 OrthancStone::DicomStructureSet& GetRtStruct() const
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117 {
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118 if (IsValid())
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119 {
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120 return *rtstruct_;
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121 }
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122 else
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123 {
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124 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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125 }
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126 }
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127 };
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128 };
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129
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130
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131 static Orthanc::PixelFormat Convert(OrthancPluginPixelFormat format)
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132 {
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133 switch (format)
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134 {
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135 case OrthancPluginPixelFormat_RGB24:
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136 return Orthanc::PixelFormat_RGB24;
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137
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138 case OrthancPluginPixelFormat_Grayscale8:
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139 return Orthanc::PixelFormat_Grayscale8;
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140
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141 case OrthancPluginPixelFormat_Grayscale16:
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142 return Orthanc::PixelFormat_Grayscale16;
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143
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144 case OrthancPluginPixelFormat_SignedGrayscale16:
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145 return Orthanc::PixelFormat_SignedGrayscale16;
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146
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147 default:
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148 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
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149 }
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150 }
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151
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152
1884
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153 static bool ParseBoolean(const std::string& key,
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154 const std::string& value)
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155 {
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156 bool result;
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157
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158 if (Orthanc::SerializationToolbox::ParseBoolean(result, value))
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159 {
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160 return result;
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161 }
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162 else
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163 {
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164 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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165 "Bad value for " + key + ": " + value);
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166 }
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167 }
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168
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169
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170 static double ParseDouble(const std::string& key,
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171 const std::string& value)
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172 {
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173 double result;
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174
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175 if (Orthanc::SerializationToolbox::ParseDouble(result, value))
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176 {
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177 return result;
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178 }
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179 else
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180 {
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181 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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182 "Bad value for " + key + ": " + value);
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183 }
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184 }
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185
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186
1887
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187 static unsigned int ParseUnsignedInteger(const std::string& key,
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188 const std::string& value)
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189 {
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190 uint32_t result;
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191
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192 if (Orthanc::SerializationToolbox::ParseUnsignedInteger32(result, value))
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193 {
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194 return result;
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195 }
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196 else
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197 {
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198 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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199 "Bad value for " + key + ": " + value);
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200 }
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201 }
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202
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203
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204
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205 class DataAugmentationParameters : public boost::noncopyable
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206 {
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207 private:
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208 double angleRadians_;
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209 double scaling_;
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210 double offsetX_;
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211 double offsetY_;
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212 bool flipX_;
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213 bool flipY_;
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214 bool hasResize_;
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215 unsigned int targetWidth_;
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216 unsigned int targetHeight_;
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217
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218 void ApplyInternal(Orthanc::ImageAccessor& target,
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diff changeset
219 const Orthanc::ImageAccessor& source)
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220 {
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diff changeset
221 if (source.GetWidth() == 0 ||
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diff changeset
222 source.GetHeight() == 0)
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diff changeset
223 {
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diff changeset
224 Orthanc::ImageProcessing::Set(target, 0); // Clear the image
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225 }
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diff changeset
226 else if (target.GetWidth() == 0 ||
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diff changeset
227 target.GetHeight() == 0)
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diff changeset
228 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
229 // Nothing to do
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diff changeset
230 }
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diff changeset
231 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
232 {
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diff changeset
233 OrthancStone::AffineTransform2D transform = ComputeTransform(source.GetWidth(), source.GetHeight());
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diff changeset
234
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diff changeset
235 OrthancStone::ImageInterpolation interpolation;
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diff changeset
236
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diff changeset
237 if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
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diff changeset
238 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
239 LOG(WARNING) << "Bilinear interpolation for color images is not implemented yet";
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240 interpolation = OrthancStone::ImageInterpolation_Nearest;
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241 }
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diff changeset
242 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
243 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
244 interpolation = OrthancStone::ImageInterpolation_Bilinear;
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245 }
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diff changeset
246
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diff changeset
247 transform.Apply(target, source, interpolation, true /* clear */);
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248 }
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diff changeset
249 }
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diff changeset
250
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
251
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
252 Orthanc::ImageAccessor* ApplyUnchecked(const Orthanc::ImageAccessor& source)
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253 {
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diff changeset
254 std::unique_ptr<Orthanc::ImageAccessor> target;
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diff changeset
255
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diff changeset
256 if (hasResize_)
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diff changeset
257 {
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diff changeset
258 target.reset(new Orthanc::Image(source.GetFormat(), targetWidth_, targetHeight_, false));
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diff changeset
259 }
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260 else
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diff changeset
261 {
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diff changeset
262 target.reset(new Orthanc::Image(source.GetFormat(), source.GetWidth(), source.GetHeight(), false));
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diff changeset
263 }
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diff changeset
264
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diff changeset
265 ApplyInternal(*target, source);
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diff changeset
266 return target.release();
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diff changeset
267 }
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diff changeset
268
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diff changeset
269
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diff changeset
270 public:
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diff changeset
271 DataAugmentationParameters()
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diff changeset
272 {
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diff changeset
273 Clear();
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diff changeset
274 }
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diff changeset
275
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diff changeset
276
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diff changeset
277 void Clear()
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278 {
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diff changeset
279 angleRadians_ = 0;
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diff changeset
280 scaling_ = 1;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
281 offsetX_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
282 offsetY_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
283 flipX_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
284 flipY_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
285 hasResize_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
286 targetWidth_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
287 targetHeight_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
288 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
289
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
290
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
291 OrthancStone::AffineTransform2D ComputeTransform(unsigned int sourceWidth,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
292 unsigned int sourceHeight) const
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
293 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
294 unsigned int w = (hasResize_ ? targetWidth_ : sourceWidth);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
295 unsigned int h = (hasResize_ ? targetHeight_ : sourceHeight);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
296
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
297 if (w == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
298 h == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
299 sourceWidth == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
300 sourceHeight == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
301 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
302 // Division by zero
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
303 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
304 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
305
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
306 double r = std::min(static_cast<double>(w) / static_cast<double>(sourceWidth),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
307 static_cast<double>(h) / static_cast<double>(sourceHeight));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
308
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
309 OrthancStone::AffineTransform2D resize = OrthancStone::AffineTransform2D::Combine(
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
310 OrthancStone::AffineTransform2D::CreateOffset(static_cast<double>(w) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
311 static_cast<double>(h) / 2.0),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
312 OrthancStone::AffineTransform2D::CreateScaling(r, r));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
313
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
314 OrthancStone::AffineTransform2D dataAugmentation = OrthancStone::AffineTransform2D::Combine(
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
315 OrthancStone::AffineTransform2D::CreateScaling(scaling_, scaling_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
316 OrthancStone::AffineTransform2D::CreateOffset(offsetX_, offsetY_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
317 OrthancStone::AffineTransform2D::CreateRotation(angleRadians_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
318 OrthancStone::AffineTransform2D::CreateOffset(-static_cast<double>(sourceWidth) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
319 -static_cast<double>(sourceHeight) / 2.0),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
320 OrthancStone::AffineTransform2D::CreateFlip(flipX_, flipY_, sourceWidth, sourceHeight));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
321
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
322 return OrthancStone::AffineTransform2D::Combine(resize, dataAugmentation);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
323 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
324
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
325
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
326 bool ParseParameter(const std::string& key,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
327 const std::string& value)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
328 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
329 if (key == "angle")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
330 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
331 double angle = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
332 angleRadians_ = angle / 180.0 * boost::math::constants::pi<double>();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
333 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
334 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
335 else if (key == "scaling")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
336 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
337 scaling_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
338 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
339 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
340 else if (key == "offset-x")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
341 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
342 offsetX_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
343 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
344 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
345 else if (key == "offset-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
346 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
347 offsetY_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
348 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
349 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
350 else if (key == "flip-x")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
351 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
352 flipX_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
353 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
354 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
355 else if (key == "flip-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
356 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
357 flipY_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
358 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
359 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
360 else if (key == "resize")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
361 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
362 std::vector<std::string> tokens;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
363 Orthanc::Toolbox::TokenizeString(tokens, value, ',');
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
364 if (tokens.size() != 2)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
365 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
366 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
367 "Must provide two integers separated by commas in " + key + ": " + value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
368 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
369 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
370 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
371 targetWidth_ = ParseUnsignedInteger(key, tokens[0]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
372 targetHeight_ = ParseUnsignedInteger(key, tokens[1]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
373 hasResize_ = true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
374 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
375 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
376 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
377 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
378 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
379 return false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
380 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
381 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
382
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
383
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
384 Orthanc::ImageAccessor* Apply(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
385 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
386 if (source.GetFormat() != Orthanc::PixelFormat_RGB24 &&
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
387 source.GetFormat() != Orthanc::PixelFormat_Float32)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
388 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
389 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
390 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
391 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
392 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
393 return ApplyUnchecked(source);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
394 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
395 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
396
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
397
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
398 Orthanc::ImageAccessor* ApplyBinaryMask(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
399 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
400 if (source.GetFormat() != Orthanc::PixelFormat_Grayscale8)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
401 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
402 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
403 "A segmentation mask should be a grayscale image");
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
404 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
405 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
406 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
407 std::unique_ptr<Orthanc::ImageAccessor> target(ApplyUnchecked(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
408
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
409 const unsigned int h = target->GetHeight();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
410 const unsigned int w = target->GetWidth();
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
411
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
412 // Apply thresholding to get back a binary image
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
413 for (unsigned int y = 0; y < h; y++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
414 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
415 uint8_t* p = reinterpret_cast<uint8_t*>(target->GetRow(y));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
416 for (unsigned int x = 0; x < w; x++, p++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
417 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
418 if (*p < 128)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
419 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
420 *p = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
421 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
422 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
423 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
424 *p = 255;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
425 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
426 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
427 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
428
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
429 return target.release();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
430 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
431 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
432 };
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
433
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
434
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
435 static OrthancStone::DicomInstanceParameters* GetInstanceParameters(const std::string& orthancId)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
436 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
437 OrthancPlugins::MemoryBuffer tags;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
438 if (!tags.RestApiGet("/instances/" + orthancId + "/tags", false))
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
439 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
440 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
441 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
442
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
443 Json::Value json;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
444 tags.ToJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
445
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
446 Orthanc::DicomMap m;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
447 m.FromDicomAsJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
448
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
449 return new OrthancStone::DicomInstanceParameters(m);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
450 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
451
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
452
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
453 static void AnswerNumpyImage(OrthancPluginRestOutput* output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
454 const Orthanc::ImageAccessor& image,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
455 bool compress)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
456 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
457 std::string answer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
458 Orthanc::NumpyWriter writer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
459 writer.SetCompressed(compress);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
460 Orthanc::IImageWriter::WriteToMemory(writer, answer, image);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
461
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
462 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
463 answer.c_str(), answer.size(), "application/octet-stream");
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
464 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
465
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
466
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
467 static void RenderNumpyFrame(OrthancPluginRestOutput* output,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
468 const char* url,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
469 const OrthancPluginHttpRequest* request)
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
470 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
471 DataAugmentationParameters dataAugmentation;
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
472 bool compress = false;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
473
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
474 for (uint32_t i = 0; i < request->getCount; i++)
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
475 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
476 std::string key(request->getKeys[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
477 std::string value(request->getValues[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
478
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
479 if (!dataAugmentation.ParseParameter(key, value))
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
480 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
481 if (key == "compress")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
482 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
483 compress = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
484 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
485 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
486 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
487 LOG(WARNING) << "Unsupported option for data augmentation: " << key;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
488 }
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
489 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
490 }
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
491
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
492 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(request->groups[0]));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
493
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
494 OrthancPlugins::MemoryBuffer dicom;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
495 dicom.GetDicomInstance(request->groups[0]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
496
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
497 unsigned int frame = boost::lexical_cast<unsigned int>(request->groups[1]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
498
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
499 OrthancPlugins::OrthancImage image;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
500 image.DecodeDicomImage(dicom.GetData(), dicom.GetSize(), frame);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
501
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
502 Orthanc::ImageAccessor source;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
503 source.AssignReadOnly(Convert(image.GetPixelFormat()), image.GetWidth(), image.GetHeight(),
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
504 image.GetPitch(), image.GetBuffer());
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
505
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
506 std::unique_ptr<Orthanc::ImageAccessor> modified;
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
507
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
508 if (parameters->GetSopClassUid() == OrthancStone::SopClassUid_DicomSeg)
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
509 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
510 modified.reset(dataAugmentation.ApplyBinaryMask(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
511 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
512 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
513 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
514 modified.reset(dataAugmentation.Apply(source));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
515 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
516 else
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
517 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
518 std::unique_ptr<Orthanc::ImageAccessor> converted(parameters->ConvertToFloat(source));
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
519 assert(converted.get() != NULL);
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
520
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
521 modified.reset(dataAugmentation.Apply(*converted));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
522 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
523
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
524 assert(modified.get() != NULL);
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
525 AnswerNumpyImage(output, *modified, compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
526 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
527
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
528
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
529 static bool IsRtStruct(const std::string& instanceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
530 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
531 static const char* SOP_CLASS_UID = "0008,0016";
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
532 static const char* RT_STRUCT_IOD = "1.2.840.10008.5.1.4.1.1.481.3";
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
533
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
534 std::string s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
535 if (OrthancPlugins::RestApiGetString(s, "/instances/" + instanceId + "/content/" + SOP_CLASS_UID, false) &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
536 !s.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
537 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
538 if (s[s.size() - 1] == '\0') // Deal with DICOM padding
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
539 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
540 s.resize(s.size() - 1);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
541 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
542
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
543 return s == RT_STRUCT_IOD;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
544 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
545 else
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
546 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
547 return false;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
548 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
549 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
550
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
551
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
552 static void ListRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
553 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
554 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
555 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
556 // This is a quick version of "/tools/find" on "SOPClassUID" (the
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
557 // latter would load all the DICOM files from disk)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
558
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
559 static const char* INSTANCES = "Instances";
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
560
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
561 Json::Value series;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
562 OrthancPlugins::RestApiGet(series, "/series?expand", false);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
563
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
564 if (series.type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
565 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
566 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
567 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
568
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
569 Json::Value answer = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
570
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
571 for (Json::Value::ArrayIndex i = 0; i < series.size(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
572 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
573 if (series[i].type() != Json::objectValue ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
574 !series[i].isMember(INSTANCES) ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
575 series[i][INSTANCES].type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
576 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
577 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
578 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
579
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
580 const Json::Value& instances = series[i][INSTANCES];
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
581
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
582 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
583 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
584 if (instances[j].type() != Json::stringValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
585 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
586 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
587 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
588 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
589
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
590 if (instances.size() > 0 &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
591 IsRtStruct(instances[0].asString()))
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
592 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
593 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
594 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
595 answer.append(instances[j].asString());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
596 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
597 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
598 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
599
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
600 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
601 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
602 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
603
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
604
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
605 static void GetRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
606 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
607 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
608 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
609 static const char* STRUCTURES = "Structures";
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
610 static const char* INSTANCES = "Instances";
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
611
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
612 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
613
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
614 if (!accessor.IsValid())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
615 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
616 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
617 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
618
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
619 Json::Value answer;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
620 answer[STRUCTURES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
621
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
622 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
623 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
624 Json::Value color = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
625 color.append(accessor.GetRtStruct().GetStructureColor(i).GetRed());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
626 color.append(accessor.GetRtStruct().GetStructureColor(i).GetGreen());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
627 color.append(accessor.GetRtStruct().GetStructureColor(i).GetBlue());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
628
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
629 Json::Value structure;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
630 structure["Name"] = accessor.GetRtStruct().GetStructureName(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
631 structure["Interpretation"] = accessor.GetRtStruct().GetStructureInterpretation(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
632 structure["Color"] = color;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
633
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
634 answer[STRUCTURES].append(structure);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
635 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
636
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
637 std::set<std::string> sopInstanceUids;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
638 accessor.GetRtStruct().GetReferencedInstances(sopInstanceUids);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
639
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
640 answer[INSTANCES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
641 for (std::set<std::string>::const_iterator it = sopInstanceUids.begin(); it != sopInstanceUids.end(); ++it)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
642 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
643 OrthancPlugins::OrthancString s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
644 s.Assign(OrthancPluginLookupInstance(OrthancPlugins::GetGlobalContext(), it->c_str()));
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
645
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
646 std::string t;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
647 s.ToString(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
648
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
649 answer[INSTANCES].append(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
650 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
651
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
652 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
653 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
654 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
655
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
656
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
657
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
658 static void RenderRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
659 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
660 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
661 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
662 DataAugmentationParameters dataAugmentation;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
663 std::string structureName;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
664 std::string instanceId;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
665 bool compress = false;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
666
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
667 for (uint32_t i = 0; i < request->getCount; i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
668 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
669 std::string key(request->getKeys[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
670 std::string value(request->getValues[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
671
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
672 if (!dataAugmentation.ParseParameter(key, value))
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
673 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
674 if (key == "structure")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
675 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
676 structureName = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
677 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
678 else if (key == "instance")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
679 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
680 instanceId = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
681 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
682 else if (key == "compress")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
683 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
684 compress = ParseBoolean(key, value);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
685 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
686 else
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
687 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
688 LOG(WARNING) << "Unsupported option: " << key;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
689 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
690 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
691 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
692
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
693 if (structureName.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
694 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
695 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
696 "Missing option \"structure\" to provide the structure name");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
697 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
698
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
699 if (instanceId.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
700 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
701 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
702 "Missing option \"instance\" to provide the Orthanc identifier of the instance of interest");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
703 }
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
704
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
705 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(instanceId));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
706
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
707 std::list< std::vector<OrthancStone::Vector> > polygons;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
708
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
709 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
710 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
711
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
712 if (!accessor.IsValid())
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
713 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
714 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
715 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
716
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
717 size_t structureIndex;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
718 bool found = false;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
719 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
720 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
721 if (accessor.GetRtStruct().GetStructureName(i) == structureName)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
722 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
723 structureIndex = i;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
724 found = true;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
725 break;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
726 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
727 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
728
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
729 if (!found)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
730 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
731 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem,
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
732 "Unknown structure name: " + structureName);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
733 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
734
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
735 accessor.GetRtStruct().GetStructurePoints(polygons, structureIndex, parameters->GetSopInstanceUid());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
736 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
737
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
738 Orthanc::Image tmp(Orthanc::PixelFormat_Grayscale8, parameters->GetWidth(), parameters->GetHeight(), false);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
739 Orthanc::ImageProcessing::Set(tmp, 0);
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
740
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
741 OrthancStone::AffineTransform2D transform = dataAugmentation.ComputeTransform(parameters->GetWidth(), parameters->GetHeight());
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
742
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
743 for (std::list< std::vector<OrthancStone::Vector> >::const_iterator
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
744 it = polygons.begin(); it != polygons.end(); ++it)
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
745 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
746 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
747 points.reserve(it->size());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
748
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
749 for (size_t i = 0; i < it->size(); i++)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
750 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
751 double x, y;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
752 parameters->GetGeometry().ProjectPoint(x, y, (*it) [i]);
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
753 x /= parameters->GetPixelSpacingX();
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
754 y /= parameters->GetPixelSpacingY();
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
755
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
756 transform.Apply(x, y);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
757
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
758 points.push_back(Orthanc::ImageProcessing::ImagePoint(x, y));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
759 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
760
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
761 Orthanc::ImageProcessing::FillPolygon(tmp, points, 255);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
762 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
763
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
764 AnswerNumpyImage(output, tmp, compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
765 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
766
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
767
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
768
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
769 OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
770 OrthancPluginResourceType resourceType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
771 const char* resourceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
772 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
773 switch (changeType)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
774 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
775 case OrthancPluginChangeType_Deleted:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
776 if (resourceType == OrthancPluginResourceType_Instance)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
777 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
778 DicomStructureCache::GetSingleton().Invalidate(resourceId);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
779 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
780
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
781 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
782
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
783 case OrthancPluginChangeType_OrthancStarted:
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
784 {
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
785 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9");
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
786 accessor.GetRtStruct().Test();
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
787 break;
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
788 }
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
789
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
790 default:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
791 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
792 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
793
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
794 return OrthancPluginErrorCode_Success;
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
795 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
796
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
797
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
798 extern "C"
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
799 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
800 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
802 OrthancPlugins::SetGlobalContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
803
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
804 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
805 Orthanc::Logging::InitializePluginContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
806 #else
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
807 Orthanc::Logging::Initialize(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
808 #endif
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
809
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
810 /* Check the version of the Orthanc core */
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
811 if (OrthancPluginCheckVersion(context) == 0)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
812 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
813 char info[1024];
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
814 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
815 context->orthancVersion,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
816 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
817 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
818 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
819 OrthancPluginLogError(context, info);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
820 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
821 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
822
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
823 try
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
824 {
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
825 OrthancPlugins::RegisterRestCallback<RenderNumpyFrame>("/stone/instances/([^/]+)/frames/([0-9]+)/numpy", true);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
826 OrthancPlugins::RegisterRestCallback<ListRtStruct>("/stone/rt-struct", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
827 OrthancPlugins::RegisterRestCallback<GetRtStruct>("/stone/rt-struct/([^/]+)/info", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
828 OrthancPlugins::RegisterRestCallback<RenderRtStruct>("/stone/rt-struct/([^/]+)/numpy", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
829 OrthancPluginRegisterOnChangeCallback(context, OnChangeCallback);
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
830 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
831 catch (...)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
832 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
833 OrthancPlugins::LogError("Exception while initializing the Stone Web viewer plugin");
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
835 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
836
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
837 return 0;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
838 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
840
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
841 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
842 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
843 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
844
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
845
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
846 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
847 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
848 return PLUGIN_NAME;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
849 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
850
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
851
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
852 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
854 return PLUGIN_VERSION;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
855 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
856 }