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annotate RenderingPlugin/Sources/Plugin.cpp @ 1943:a601b8abc1cb

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rendering plugin: subpixel accuracy in rt-struct
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 02 Jun 2022 10:52:47 +0200
parents bd527bbc34df
children 3daecfa5791c
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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23 #include "OrthancPluginConnection.h"
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24 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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25
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26 #include "../../OrthancStone/Sources/Toolbox/AffineTransform2D.h"
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27 #include "../../OrthancStone/Sources/Toolbox/DicomInstanceParameters.h"
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28 #include "../../OrthancStone/Sources/Toolbox/DicomStructureSet.h"
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29
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30 #include <EmbeddedResources.h>
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31
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32 #include <Images/Image.h>
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33 #include <Images/ImageProcessing.h>
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34 #include <Images/PngWriter.h>
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35 #include <Images/NumpyWriter.h>
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36 #include <Logging.h>
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37 #include <SerializationToolbox.h>
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38 #include <Toolbox.h>
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39
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40 #include <boost/math/constants/constants.hpp>
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41
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42
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43 static const char* const INSTANCES = "Instances";
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44 static const char* const RT_STRUCT_IOD = "1.2.840.10008.5.1.4.1.1.481.3";
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45 static const char* const SOP_CLASS_UID = "0008,0016";
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46 static const char* const STRUCTURES = "Structures";
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47
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48
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49 class DicomStructureCache : public boost::noncopyable
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50 {
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51 private:
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52 boost::mutex mutex_;
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53 std::string instanceId_;
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54 std::unique_ptr<OrthancStone::DicomStructureSet> rtstruct_;
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55
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56 DicomStructureCache() // Singleton design pattern
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57 {
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58 }
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59
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60 public:
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61 void Invalidate(const std::string& instanceId)
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62 {
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63 boost::mutex::scoped_lock lock(mutex_);
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64
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65 if (instanceId_ == instanceId)
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66 {
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67 rtstruct_.reset(NULL);
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68 }
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69 }
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70
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71 static DicomStructureCache& GetSingleton()
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72 {
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73 static DicomStructureCache instance;
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74 return instance;
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75 }
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76
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77 class Accessor : public boost::noncopyable
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78 {
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79 private:
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80 boost::mutex::scoped_lock lock_;
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81 std::string instanceId_;
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82 OrthancStone::DicomStructureSet* rtstruct_;
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83
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84 public:
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85 Accessor(DicomStructureCache& that,
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86 const std::string& instanceId) :
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87 lock_(that.mutex_),
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88 instanceId_(instanceId),
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89 rtstruct_(NULL)
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90 {
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91 if (that.instanceId_ == instanceId &&
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92 that.rtstruct_.get() != NULL)
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93 {
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94 rtstruct_ = that.rtstruct_.get();
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95 }
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96 else
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97 {
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98 try
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99 {
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100 OrthancStone::OrthancPluginConnection connection;
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101 OrthancStone::FullOrthancDataset dataset(connection, "/instances/" + instanceId + "/tags?ignore-length=3006-0050");
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102 that.rtstruct_.reset(new OrthancStone::DicomStructureSet(dataset));
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103 that.instanceId_ = instanceId;
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104 rtstruct_ = that.rtstruct_.get();
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105 }
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106 catch (Orthanc::OrthancException&)
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107 {
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108 }
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109 }
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110 }
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111
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112 const std::string& GetInstanceId() const
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113 {
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114 return instanceId_;
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115 }
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116
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117 bool IsValid() const
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118 {
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119 return rtstruct_ != NULL;
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120 }
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121
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122 OrthancStone::DicomStructureSet& GetRtStruct() const
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123 {
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124 if (IsValid())
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125 {
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126 return *rtstruct_;
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127 }
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128 else
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129 {
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130 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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131 }
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132 }
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133 };
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134 };
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135
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136
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137 static Orthanc::PixelFormat Convert(OrthancPluginPixelFormat format)
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138 {
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139 switch (format)
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140 {
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141 case OrthancPluginPixelFormat_RGB24:
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142 return Orthanc::PixelFormat_RGB24;
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143
4e80b8afd0da numpy in rendering plugin
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144 case OrthancPluginPixelFormat_Grayscale8:
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145 return Orthanc::PixelFormat_Grayscale8;
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146
4e80b8afd0da numpy in rendering plugin
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147 case OrthancPluginPixelFormat_Grayscale16:
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148 return Orthanc::PixelFormat_Grayscale16;
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149
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150 case OrthancPluginPixelFormat_SignedGrayscale16:
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151 return Orthanc::PixelFormat_SignedGrayscale16;
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152
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153 default:
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154 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
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155 }
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156 }
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157
4e80b8afd0da numpy in rendering plugin
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158
1884
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159 static bool ParseBoolean(const std::string& key,
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160 const std::string& value)
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161 {
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162 bool result;
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163
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164 if (Orthanc::SerializationToolbox::ParseBoolean(result, value))
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165 {
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166 return result;
0c6923982fdd rendering options from GET args
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167 }
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diff changeset
168 else
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169 {
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170 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
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171 "Bad value for " + key + ": " + value);
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172 }
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173 }
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parents: 1883
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174
0c6923982fdd rendering options from GET args
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175
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diff changeset
176 static double ParseDouble(const std::string& key,
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177 const std::string& value)
0c6923982fdd rendering options from GET args
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178 {
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diff changeset
179 double result;
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180
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181 if (Orthanc::SerializationToolbox::ParseDouble(result, value))
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182 {
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183 return result;
0c6923982fdd rendering options from GET args
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184 }
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185 else
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186 {
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187 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
0c6923982fdd rendering options from GET args
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188 "Bad value for " + key + ": " + value);
0c6923982fdd rendering options from GET args
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189 }
0c6923982fdd rendering options from GET args
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190 }
0c6923982fdd rendering options from GET args
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parents: 1883
diff changeset
191
0c6923982fdd rendering options from GET args
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192
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
193 static unsigned int ParseUnsignedInteger(const std::string& key,
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194 const std::string& value)
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195 {
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196 uint32_t result;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
197
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
198 if (Orthanc::SerializationToolbox::ParseUnsignedInteger32(result, value))
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
199 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
200 return result;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
201 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
202 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
203 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
204 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
205 "Bad value for " + key + ": " + value);
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diff changeset
206 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
207 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
208
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
209
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
210
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
211 class DataAugmentationParameters : public boost::noncopyable
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diff changeset
212 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
213 private:
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diff changeset
214 double angleRadians_;
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diff changeset
215 double scaling_;
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diff changeset
216 double offsetX_;
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diff changeset
217 double offsetY_;
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diff changeset
218 bool flipX_;
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diff changeset
219 bool flipY_;
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diff changeset
220 bool hasResize_;
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diff changeset
221 unsigned int targetWidth_;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
222 unsigned int targetHeight_;
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
223 bool hasInterpolation_;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
224 OrthancStone::ImageInterpolation interpolation_;
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
225
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
226 void ApplyInternal(Orthanc::ImageAccessor& target,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
227 const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
228 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
229 if (source.GetWidth() == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
230 source.GetHeight() == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
231 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
232 Orthanc::ImageProcessing::Set(target, 0); // Clear the image
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
233 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
234 else if (target.GetWidth() == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
235 target.GetHeight() == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
236 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
237 // Nothing to do
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
238 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
239 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
240 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
241 OrthancStone::AffineTransform2D transform = ComputeTransform(source.GetWidth(), source.GetHeight());
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
242
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
243 OrthancStone::ImageInterpolation interpolation;
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
244
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
245 if (hasInterpolation_)
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
246 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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diff changeset
247 interpolation = interpolation_;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
248 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
249 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
250 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
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parents: 1916
diff changeset
251 // Bilinear interpolation for color images is not implemented yet
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
252 interpolation = OrthancStone::ImageInterpolation_Nearest;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
253 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
254 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
255 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
256 interpolation = OrthancStone::ImageInterpolation_Bilinear;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
257 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
258
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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diff changeset
259 transform.Apply(target, source, interpolation, true /* clear */);
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diff changeset
260 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
261 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
262
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
263
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
264 Orthanc::ImageAccessor* ApplyUnchecked(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
265 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
266 std::unique_ptr<Orthanc::ImageAccessor> target;
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parents: 1886
diff changeset
267
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
268 if (hasResize_)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
269 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
270 target.reset(new Orthanc::Image(source.GetFormat(), targetWidth_, targetHeight_, false));
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parents: 1886
diff changeset
271 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
272 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
273 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
274 target.reset(new Orthanc::Image(source.GetFormat(), source.GetWidth(), source.GetHeight(), false));
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parents: 1886
diff changeset
275 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
276
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
277 ApplyInternal(*target, source);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
278 return target.release();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
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parents: 1886
diff changeset
279 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
280
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
281
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
282 public:
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
283 DataAugmentationParameters()
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
284 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
285 Clear();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
286 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
287
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
288
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
289 void Clear()
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
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290 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
291 angleRadians_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
292 scaling_ = 1;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
293 offsetX_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
294 offsetY_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
295 flipX_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
296 flipY_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
297 hasResize_ = false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
298 targetWidth_ = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
299 targetHeight_ = 0;
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
300 hasInterpolation_ = false;
1887
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parents: 1886
diff changeset
301 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
302
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
303
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
304 OrthancStone::AffineTransform2D ComputeTransform(unsigned int sourceWidth,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
305 unsigned int sourceHeight) const
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
306 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
307 unsigned int w = (hasResize_ ? targetWidth_ : sourceWidth);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
308 unsigned int h = (hasResize_ ? targetHeight_ : sourceHeight);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
309
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
310 if (w == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
311 h == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
312 sourceWidth == 0 ||
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
313 sourceHeight == 0)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
314 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
315 // Division by zero
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
316 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
317 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
318
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
319 double r = std::min(static_cast<double>(w) / static_cast<double>(sourceWidth),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
320 static_cast<double>(h) / static_cast<double>(sourceHeight));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
321
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
322 OrthancStone::AffineTransform2D resize = OrthancStone::AffineTransform2D::Combine(
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
323 OrthancStone::AffineTransform2D::CreateOffset(static_cast<double>(w) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
324 static_cast<double>(h) / 2.0),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
325 OrthancStone::AffineTransform2D::CreateScaling(r, r));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
326
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
327 OrthancStone::AffineTransform2D dataAugmentation = OrthancStone::AffineTransform2D::Combine(
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
328 OrthancStone::AffineTransform2D::CreateScaling(scaling_, scaling_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
329 OrthancStone::AffineTransform2D::CreateOffset(offsetX_, offsetY_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
330 OrthancStone::AffineTransform2D::CreateRotation(angleRadians_),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
331 OrthancStone::AffineTransform2D::CreateOffset(-static_cast<double>(sourceWidth) / 2.0,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
332 -static_cast<double>(sourceHeight) / 2.0),
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
333 OrthancStone::AffineTransform2D::CreateFlip(flipX_, flipY_, sourceWidth, sourceHeight));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
334
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
335 return OrthancStone::AffineTransform2D::Combine(resize, dataAugmentation);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
336 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
337
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
338
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
339 bool ParseParameter(const std::string& key,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
340 const std::string& value)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
341 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
342 if (key == "angle")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
343 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
344 double angle = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
345 angleRadians_ = angle / 180.0 * boost::math::constants::pi<double>();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
346 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
347 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
348 else if (key == "scaling")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
349 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
350 scaling_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
351 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
352 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
353 else if (key == "offset-x")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
354 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
355 offsetX_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
356 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
357 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
358 else if (key == "offset-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
359 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
360 offsetY_ = ParseDouble(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
361 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
362 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
363 else if (key == "flip-x")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
364 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
365 flipX_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
366 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
367 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
368 else if (key == "flip-y")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
369 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
370 flipY_ = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
371 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
372 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
373 else if (key == "resize")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
374 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
375 std::vector<std::string> tokens;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
376 Orthanc::Toolbox::TokenizeString(tokens, value, ',');
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
377 if (tokens.size() != 2)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
378 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
379 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
380 "Must provide two integers separated by commas in " + key + ": " + value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
381 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
382 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
383 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
384 targetWidth_ = ParseUnsignedInteger(key, tokens[0]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
385 targetHeight_ = ParseUnsignedInteger(key, tokens[1]);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
386 hasResize_ = true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
387 return true;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
388 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
389 }
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
390 else if (key == "interpolation")
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
391 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
392 if (value == "nearest")
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
393 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
394 interpolation_ = OrthancStone::ImageInterpolation_Nearest;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
395 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
396 else if (value == "bilinear")
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
397 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
398 interpolation_ = OrthancStone::ImageInterpolation_Bilinear;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
399 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
400 else
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
401 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
402 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange,
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
403 "Unknown interpolation (must be \"nearest\" or \"bilinear\"): " + value);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
404 }
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
405
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
406 hasInterpolation_ = true;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
407 return true;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
408 }
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
409 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
410 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
411 return false;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
412 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
413 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
414
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
415
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
416 Orthanc::ImageAccessor* Apply(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
417 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
418 if (source.GetFormat() != Orthanc::PixelFormat_RGB24 &&
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
419 source.GetFormat() != Orthanc::PixelFormat_Float32)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
420 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
421 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
422 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
423 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
424 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
425 return ApplyUnchecked(source);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
426 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
427 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
428
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
429
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
430 Orthanc::ImageAccessor* ApplyBinaryMask(const Orthanc::ImageAccessor& source)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
431 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
432 if (source.GetFormat() != Orthanc::PixelFormat_Grayscale8)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
433 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
434 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat,
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
435 "A segmentation mask should be a grayscale image");
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
436 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
437 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
438 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
439 std::unique_ptr<Orthanc::ImageAccessor> target(ApplyUnchecked(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
440
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
441 const unsigned int h = target->GetHeight();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
442 const unsigned int w = target->GetWidth();
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
443
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
444 // Apply thresholding to get back a binary image
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
445 for (unsigned int y = 0; y < h; y++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
446 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
447 uint8_t* p = reinterpret_cast<uint8_t*>(target->GetRow(y));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
448 for (unsigned int x = 0; x < w; x++, p++)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
449 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
450 if (*p < 128)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
451 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
452 *p = 0;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
453 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
454 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
455 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
456 *p = 255;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
457 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
458 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
459 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
460
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
461 return target.release();
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
462 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
463 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
464 };
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
465
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
466
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
467 static OrthancStone::DicomInstanceParameters* GetInstanceParameters(const std::string& orthancId)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
468 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
469 OrthancPlugins::MemoryBuffer tags;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
470 if (!tags.RestApiGet("/instances/" + orthancId + "/tags", false))
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
471 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
472 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
473 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
474
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
475 Json::Value json;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
476 tags.ToJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
477
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
478 Orthanc::DicomMap m;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
479 m.FromDicomAsJson(json);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
480
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
481 return new OrthancStone::DicomInstanceParameters(m);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
482 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
483
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
484
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
485 static void AnswerNumpyImage(OrthancPluginRestOutput* output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
486 const Orthanc::ImageAccessor& image,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
487 bool compress)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
488 {
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
489 std::string answer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
490 Orthanc::NumpyWriter writer;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
491 writer.SetCompressed(compress);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
492 Orthanc::IImageWriter::WriteToMemory(writer, answer, image);
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
493
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
494 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
495 answer.c_str(), answer.size(), "application/octet-stream");
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
496 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
497
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
498
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
499 static void RenderNumpyFrame(OrthancPluginRestOutput* output,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
500 const char* url,
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
501 const OrthancPluginHttpRequest* request)
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
502 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
503 DataAugmentationParameters dataAugmentation;
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
504 bool compress = false;
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
505
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
506 for (uint32_t i = 0; i < request->getCount; i++)
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
507 {
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
508 std::string key(request->getKeys[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
509 std::string value(request->getValues[i]);
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
510
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
511 if (!dataAugmentation.ParseParameter(key, value))
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
512 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
513 if (key == "compress")
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
514 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
515 compress = ParseBoolean(key, value);
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
516 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
517 else
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
518 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
519 LOG(WARNING) << "Unsupported option for data augmentation: " << key;
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
520 }
1884
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
521 }
0c6923982fdd rendering options from GET args
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1883
diff changeset
522 }
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
523
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
524 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(request->groups[0]));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
525
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
526 OrthancPlugins::MemoryBuffer dicom;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
527 dicom.GetDicomInstance(request->groups[0]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
528
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
529 unsigned int frame = boost::lexical_cast<unsigned int>(request->groups[1]);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
530
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
531 OrthancPlugins::OrthancImage image;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
532 image.DecodeDicomImage(dicom.GetData(), dicom.GetSize(), frame);
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
533
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
534 Orthanc::ImageAccessor source;
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
535 source.AssignReadOnly(Convert(image.GetPixelFormat()), image.GetWidth(), image.GetHeight(),
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
536 image.GetPitch(), image.GetBuffer());
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
537
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
538 std::unique_ptr<Orthanc::ImageAccessor> modified;
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
539
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
540 if (parameters->GetSopClassUid() == OrthancStone::SopClassUid_DicomSeg)
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
541 {
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
542 modified.reset(dataAugmentation.ApplyBinaryMask(source));
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
543 }
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
544 else if (source.GetFormat() == Orthanc::PixelFormat_RGB24)
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
545 {
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
546 modified.reset(dataAugmentation.Apply(source));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
547 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
548 else
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
549 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
550 std::unique_ptr<Orthanc::ImageAccessor> converted(parameters->ConvertToFloat(source));
1883
fba6e550e0ee apply rescale slope/intercept in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1882
diff changeset
551 assert(converted.get() != NULL);
1887
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
552
aa4ed1cf4e8d refactoring using DataAugmentationParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1886
diff changeset
553 modified.reset(dataAugmentation.Apply(*converted));
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
554 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
555
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
556 assert(modified.get() != NULL);
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
557 AnswerNumpyImage(output, *modified, compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
558 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
559
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
560
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
561 static bool IsRtStruct(const std::string& instanceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
562 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
563 std::string s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
564 if (OrthancPlugins::RestApiGetString(s, "/instances/" + instanceId + "/content/" + SOP_CLASS_UID, false) &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
565 !s.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
566 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
567 if (s[s.size() - 1] == '\0') // Deal with DICOM padding
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
568 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
569 s.resize(s.size() - 1);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
570 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
571
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
572 return s == RT_STRUCT_IOD;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
573 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
574 else
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
575 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
576 return false;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
577 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
578 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
579
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
580
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
581 static void ListRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
582 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
583 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
584 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
585 // This is a quick version of "/tools/find" on "SOPClassUID" (the
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
586 // latter would load all the DICOM files from disk)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
587
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
588 Json::Value series;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
589 OrthancPlugins::RestApiGet(series, "/series?expand", false);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
590
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
591 if (series.type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
592 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
593 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
594 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
595
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
596 Json::Value answer = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
597
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
598 for (Json::Value::ArrayIndex i = 0; i < series.size(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
599 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
600 if (series[i].type() != Json::objectValue ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
601 !series[i].isMember(INSTANCES) ||
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
602 series[i][INSTANCES].type() != Json::arrayValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
603 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
604 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
605 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
606
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
607 const Json::Value& instances = series[i][INSTANCES];
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
608
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
609 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
610 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
611 if (instances[j].type() != Json::stringValue)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
612 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
613 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
614 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
615 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
616
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
617 if (instances.size() > 0 &&
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
618 IsRtStruct(instances[0].asString()))
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
619 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
620 for (Json::Value::ArrayIndex j = 0; j < instances.size(); j++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
621 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
622 answer.append(instances[j].asString());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
623 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
624 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
625 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
626
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
627 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
628 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
629 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
630
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
631
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
632 static void GetRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
633 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
634 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
635 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
636 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
637
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
638 if (!accessor.IsValid())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
639 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
640 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
641 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
642
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
643 Json::Value answer;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
644 answer[STRUCTURES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
645
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
646 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
647 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
648 Json::Value color = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
649 color.append(accessor.GetRtStruct().GetStructureColor(i).GetRed());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
650 color.append(accessor.GetRtStruct().GetStructureColor(i).GetGreen());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
651 color.append(accessor.GetRtStruct().GetStructureColor(i).GetBlue());
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
652
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
653 Json::Value structure;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
654 structure["Name"] = accessor.GetRtStruct().GetStructureName(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
655 structure["Interpretation"] = accessor.GetRtStruct().GetStructureInterpretation(i);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
656 structure["Color"] = color;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
657
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
658 answer[STRUCTURES].append(structure);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
659 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
660
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
661 std::set<std::string> sopInstanceUids;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
662 accessor.GetRtStruct().GetReferencedInstances(sopInstanceUids);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
663
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
664 answer[INSTANCES] = Json::arrayValue;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
665 for (std::set<std::string>::const_iterator it = sopInstanceUids.begin(); it != sopInstanceUids.end(); ++it)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
666 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
667 OrthancPlugins::OrthancString s;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
668 s.Assign(OrthancPluginLookupInstance(OrthancPlugins::GetGlobalContext(), it->c_str()));
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
669
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
670 std::string t;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
671 s.ToString(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
672
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
673 answer[INSTANCES].append(t);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
674 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
675
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
676 std::string s = answer.toStyledString();
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
677 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), "application/json");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
678 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
679
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
680
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
681
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
682 static void RenderRtStruct(OrthancPluginRestOutput* output,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
683 const char* url,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
684 const OrthancPluginHttpRequest* request)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
685 {
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
686 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
687 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
688 private:
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
689 Orthanc::Image image_;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
690
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
691 public:
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
692 XorFiller(unsigned int width,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
693 unsigned int height) :
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
694 image_(Orthanc::PixelFormat_Grayscale8, width, height, false)
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
695 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
696 Orthanc::ImageProcessing::Set(image_, 0);
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
697 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
698
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
699 const Orthanc::ImageAccessor& GetImage() const
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
700 {
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
701 return image_;
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
702 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
703
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
704 virtual void Fill(int y,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
705 int x1,
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
706 int x2) ORTHANC_OVERRIDE
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
707 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
708 assert(x1 <= x2);
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
709
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
710 if (y >= 0 &&
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
711 y < static_cast<int>(image_.GetHeight()))
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
712 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
713 x1 = std::max(x1, 0);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
714 x2 = std::min(x2, static_cast<int>(image_.GetWidth()) - 1);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
715
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
716 uint8_t* p = reinterpret_cast<uint8_t*>(image_.GetRow(y)) + x1;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
717
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
718 for (int i = x1; i <= x2; i++, p++)
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
719 {
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
720 *p = (*p ^ 0xff);
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
721 }
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
722 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
723 }
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
724 };
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
725
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
726 DataAugmentationParameters dataAugmentation;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
727 std::string structureName;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
728 std::string instanceId;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
729 bool compress = false;
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
730
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
731 for (uint32_t i = 0; i < request->getCount; i++)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
732 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
733 std::string key(request->getKeys[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
734 std::string value(request->getValues[i]);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
735
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
736 if (!dataAugmentation.ParseParameter(key, value))
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
737 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
738 if (key == "structure")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
739 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
740 structureName = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
741 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
742 else if (key == "instance")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
743 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
744 instanceId = value;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
745 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
746 else if (key == "compress")
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
747 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
748 compress = ParseBoolean(key, value);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
749 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
750 else
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
751 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
752 LOG(WARNING) << "Unsupported option: " << key;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
753 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
754 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
755 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
756
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
757 if (structureName.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
758 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
759 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
760 "Missing option \"structure\" to provide the structure name");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
761 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
762
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
763 if (instanceId.empty())
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
764 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
765 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
766 "Missing option \"instance\" to provide the Orthanc identifier of the instance of interest");
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
767 }
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
768
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
769 std::unique_ptr<OrthancStone::DicomInstanceParameters> parameters(GetInstanceParameters(instanceId));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
770
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
771 std::list< std::vector<OrthancStone::Vector> > polygons;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
772
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
773 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
774 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), request->groups[0]);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
775
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
776 if (!accessor.IsValid())
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
777 {
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
778 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
779 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
780
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
781 size_t structureIndex;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
782 bool found = false;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
783 for (size_t i = 0; i < accessor.GetRtStruct().GetStructuresCount(); i++)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
784 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
785 if (accessor.GetRtStruct().GetStructureName(i) == structureName)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
786 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
787 structureIndex = i;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
788 found = true;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
789 break;
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
790 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
791 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
792
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
793 if (!found)
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
794 {
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
795 throw Orthanc::OrthancException(Orthanc::ErrorCode_InexistentItem,
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
796 "Unknown structure name: " + structureName);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
797 }
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
798
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
799 accessor.GetRtStruct().GetStructurePoints(polygons, structureIndex, parameters->GetSopInstanceUid());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
800 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
801
1895
14c8f339d480 removed redundant definitions Point2D, Point3D and Vector3D from DicomStructureSetUtils.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1894
diff changeset
802 // We use a "XOR" filler for the polygons in order to deal with holes in the RT-STRUCT
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
803 XorFiller filler(parameters->GetWidth(), parameters->GetHeight());
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
804 OrthancStone::AffineTransform2D transform = dataAugmentation.ComputeTransform(parameters->GetWidth(), parameters->GetHeight());
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
805
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
806 for (std::list< std::vector<OrthancStone::Vector> >::const_iterator
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
807 it = polygons.begin(); it != polygons.end(); ++it)
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
808 {
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
809 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
810 points.reserve(it->size());
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
811
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
812 for (size_t i = 0; i < it->size(); i++)
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
813 {
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
814 // The (0.5, 0.5) offset is due to the fact that DICOM
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
815 // coordinates are expressed wrt. the CENTER of the voxels
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
816
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
817 double x, y;
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
818 parameters->GetGeometry().ProjectPoint(x, y, (*it) [i]);
1943
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
819 x = x / parameters->GetPixelSpacingX() + 0.5;
a601b8abc1cb rendering plugin: subpixel accuracy in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1916
diff changeset
820 y = y / parameters->GetPixelSpacingY() + 0.5;
1889
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
821
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
822 transform.Apply(x, y);
fe4befc9c2b0 rendering of rt-struct in plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1888
diff changeset
823
1888
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
824 points.push_back(Orthanc::ImageProcessing::ImagePoint(x, y));
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
825 }
9bdce2c91620 start rendering rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1887
diff changeset
826
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
827 Orthanc::ImageProcessing::FillPolygon(filler, points);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
828 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
829
1894
438071a29f77 xor polygon filler for holes in rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1892
diff changeset
830 AnswerNumpyImage(output, filler.GetImage(), compress);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
831 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
832
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
833
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
834
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
835 OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
836 OrthancPluginResourceType resourceType,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
837 const char* resourceId)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
838 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
839 switch (changeType)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
840 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
841 case OrthancPluginChangeType_Deleted:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
842 if (resourceType == OrthancPluginResourceType_Instance)
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
843 {
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
844 DicomStructureCache::GetSingleton().Invalidate(resourceId);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
845 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
846
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
847 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
848
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
849 case OrthancPluginChangeType_OrthancStarted:
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
850 {
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
851 DicomStructureCache::Accessor accessor(DicomStructureCache::GetSingleton(), "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9");
1892
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
852 OrthancStone::LinearAlgebra::Print(accessor.GetRtStruct().GetEstimatedNormal());
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
853 printf("Slice thickness: %f\n", accessor.GetRtStruct().GetEstimatedSliceThickness());
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
854 break;
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
855 }
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1889
diff changeset
856
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
857 default:
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
858 break;
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
859 }
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
860
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
861 return OrthancPluginErrorCode_Success;
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
862 }
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
863
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
864
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
865 extern "C"
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
866 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
867 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
868 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
869 OrthancPlugins::SetGlobalContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
870
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872 Orthanc::Logging::InitializePluginContext(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 #else
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
874 Orthanc::Logging::Initialize(context);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
875 #endif
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
877 /* Check the version of the Orthanc core */
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
878 if (OrthancPluginCheckVersion(context) == 0)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
879 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
880 char info[1024];
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
882 context->orthancVersion,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
883 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
884 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
885 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
886 OrthancPluginLogError(context, info);
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
887 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
888 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
889
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
890 try
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
891 {
1882
4e80b8afd0da numpy in rendering plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1877
diff changeset
892 OrthancPlugins::RegisterRestCallback<RenderNumpyFrame>("/stone/instances/([^/]+)/frames/([0-9]+)/numpy", true);
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
893 OrthancPlugins::RegisterRestCallback<ListRtStruct>("/stone/rt-struct", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
894 OrthancPlugins::RegisterRestCallback<GetRtStruct>("/stone/rt-struct/([^/]+)/info", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
895 OrthancPlugins::RegisterRestCallback<RenderRtStruct>("/stone/rt-struct/([^/]+)/numpy", true);
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1884
diff changeset
896 OrthancPluginRegisterOnChangeCallback(context, OnChangeCallback);
1877
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
897 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
898 catch (...)
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
899 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
900 OrthancPlugins::LogError("Exception while initializing the Stone Web viewer plugin");
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
901 return -1;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
902 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
903
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
904 return 0;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
905 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
906
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
907
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
908 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
909 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
910 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
911
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
912
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
913 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
914 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
915 return PLUGIN_NAME;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
916 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
917
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
918
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
919 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
920 {
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
921 return PLUGIN_VERSION;
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
922 }
a2955abe4c2e skeleton for the RenderingPlugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
923 }