Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 395:a7a029043670 db-protobuf

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integration mainline->db-protobuf
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 05 Apr 2023 14:53:57 +0200
parents d14e6ff04a5c
children 7b3acfa95bd8
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Affero General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Affero General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Affero General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #pragma once
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25 #include "IDatabaseBackend.h"
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27 #include <OrthancException.h>
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29 #include <boost/thread/shared_mutex.hpp>
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32 namespace OrthancDatabases
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33 {
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34 /**
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35 * WARNING: This class can be invoked concurrently by several
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36 * threads if it is used from "DatabaseBackendAdapterV3".
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37 **/
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38 class IndexBackend : public IDatabaseBackend
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39 {
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40 private:
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41 class LookupFormatter;
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43 OrthancPluginContext* context_;
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44
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45 boost::shared_mutex outputFactoryMutex_;
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46 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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47
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48 protected:
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49 void ClearDeletedFiles(DatabaseManager& manager);
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51 void ClearDeletedResources(DatabaseManager& manager);
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53 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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54 DatabaseManager& manager);
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56 void SignalDeletedResources(IDatabaseBackendOutput& output,
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57 DatabaseManager& manager);
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58
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59 private:
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60 void ReadChangesInternal(IDatabaseBackendOutput& output,
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61 bool& done,
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62 DatabaseManager& manager,
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63 DatabaseManager::CachedStatement& statement,
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64 const Dictionary& args,
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65 uint32_t limit);
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67 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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68 bool& done,
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69 DatabaseManager::CachedStatement& statement,
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70 const Dictionary& args,
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71 uint32_t limit);
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73 public:
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74 explicit IndexBackend(OrthancPluginContext* context);
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76 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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77 {
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78 return context_;
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79 }
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81 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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83 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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84
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85 virtual void AddAttachment(DatabaseManager& manager,
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86 int64_t id,
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87 const OrthancPluginAttachment& attachment,
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88 int64_t revision) ORTHANC_OVERRIDE;
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90 virtual void AttachChild(DatabaseManager& manager,
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91 int64_t parent,
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92 int64_t child) ORTHANC_OVERRIDE;
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94 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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96 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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98 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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99 DatabaseManager& manager,
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100 int64_t id,
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101 int32_t attachment) ORTHANC_OVERRIDE;
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102
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103 virtual void DeleteMetadata(DatabaseManager& manager,
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104 int64_t id,
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105 int32_t metadataType) ORTHANC_OVERRIDE;
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106
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107 virtual void DeleteResource(IDatabaseBackendOutput& output,
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108 DatabaseManager& manager,
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109 int64_t id) ORTHANC_OVERRIDE;
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110
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111 virtual void GetAllInternalIds(std::list<int64_t>& target,
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112 DatabaseManager& manager,
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113 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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115 virtual void GetAllPublicIds(std::list<std::string>& target,
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116 DatabaseManager& manager,
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117 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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119 virtual void GetAllPublicIds(std::list<std::string>& target,
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120 DatabaseManager& manager,
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121 OrthancPluginResourceType resourceType,
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122 int64_t since,
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123 uint32_t limit) ORTHANC_OVERRIDE;
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124
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125 virtual void GetChanges(IDatabaseBackendOutput& output,
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126 bool& done /*out*/,
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127 DatabaseManager& manager,
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128 int64_t since,
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129 uint32_t limit) ORTHANC_OVERRIDE;
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130
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131 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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132 DatabaseManager& manager,
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133 int64_t id) ORTHANC_OVERRIDE;
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134
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135 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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136 DatabaseManager& manager,
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137 int64_t id) ORTHANC_OVERRIDE;
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138
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139 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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140 bool& done /*out*/,
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141 DatabaseManager& manager,
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142 int64_t since,
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143 uint32_t limit) ORTHANC_OVERRIDE;
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144
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145 virtual void GetLastChange(IDatabaseBackendOutput& output,
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146 DatabaseManager& manager) ORTHANC_OVERRIDE;
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147
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148 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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149 DatabaseManager& manager) ORTHANC_OVERRIDE;
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150
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151 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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152 DatabaseManager& manager,
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153 int64_t id) ORTHANC_OVERRIDE;
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154
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155 virtual std::string GetPublicId(DatabaseManager& manager,
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156 int64_t resourceId) ORTHANC_OVERRIDE;
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157
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158 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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159 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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160
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161 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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162 int64_t resourceId) ORTHANC_OVERRIDE;
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163
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164 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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165
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166 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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167
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168 virtual bool IsExistingResource(DatabaseManager& manager,
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169 int64_t internalId) ORTHANC_OVERRIDE;
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170
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171 virtual bool IsProtectedPatient(DatabaseManager& manager,
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172 int64_t internalId) ORTHANC_OVERRIDE;
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173
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174 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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175 DatabaseManager& manager,
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176 int64_t id) ORTHANC_OVERRIDE;
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177
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178 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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179 DatabaseManager& manager,
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180 int64_t id) ORTHANC_OVERRIDE;
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181
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182 virtual void LogChange(DatabaseManager& manager,
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183 int32_t changeType,
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184 int64_t resourceId,
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185 OrthancPluginResourceType resourceType,
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186 const char* date) ORTHANC_OVERRIDE;
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187
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188 virtual void LogExportedResource(DatabaseManager& manager,
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189 OrthancPluginResourceType resourceType,
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190 const char* publicId,
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191 const char* modality,
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192 const char* date,
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193 const char* patientId,
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194 const char* studyInstanceUid,
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195 const char* seriesInstanceUid,
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196 const char* sopInstanceUid) ORTHANC_OVERRIDE;
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197
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198 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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199 int64_t& revision /*out*/,
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200 DatabaseManager& manager,
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201 int64_t id,
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202 int32_t contentType) ORTHANC_OVERRIDE;
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203
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204 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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205 DatabaseManager& manager,
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206 const char* serverIdentifier,
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207 int32_t property) ORTHANC_OVERRIDE;
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208
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209 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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210 DatabaseManager& manager,
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211 OrthancPluginResourceType resourceType,
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212 uint16_t group,
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213 uint16_t element,
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214 OrthancPluginIdentifierConstraint constraint,
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215 const char* value) ORTHANC_OVERRIDE;
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216
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217 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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218 DatabaseManager& manager,
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219 OrthancPluginResourceType resourceType,
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220 uint16_t group,
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221 uint16_t element,
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222 const char* start,
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223 const char* end) ORTHANC_OVERRIDE;
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224
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225 virtual bool LookupMetadata(std::string& target /*out*/,
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226 int64_t& revision /*out*/,
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227 DatabaseManager& manager,
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228 int64_t id,
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229 int32_t metadataType) ORTHANC_OVERRIDE;
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230
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231 virtual bool LookupParent(int64_t& parentId /*out*/,
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232 DatabaseManager& manager,
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233 int64_t resourceId) ORTHANC_OVERRIDE;
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234
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235 virtual bool LookupResource(int64_t& id /*out*/,
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236 OrthancPluginResourceType& type /*out*/,
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237 DatabaseManager& manager,
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238 const char* publicId) ORTHANC_OVERRIDE;
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239
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240 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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241 DatabaseManager& manager) ORTHANC_OVERRIDE;
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242
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243 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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244 DatabaseManager& manager,
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245 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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246
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247 virtual void SetGlobalProperty(DatabaseManager& manager,
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248 const char* serverIdentifier,
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249 int32_t property,
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250 const char* utf8) ORTHANC_OVERRIDE;
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251
225
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252 virtual void SetMainDicomTag(DatabaseManager& manager,
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253 int64_t id,
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254 uint16_t group,
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255 uint16_t element,
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256 const char* value) ORTHANC_OVERRIDE;
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257
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258 virtual void SetIdentifierTag(DatabaseManager& manager,
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259 int64_t id,
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260 uint16_t group,
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261 uint16_t element,
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262 const char* value) ORTHANC_OVERRIDE;
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263
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264 virtual void SetMetadata(DatabaseManager& manager,
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265 int64_t id,
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266 int32_t metadataType,
256
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267 const char* value,
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268 int64_t revision) ORTHANC_OVERRIDE;
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269
225
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270 virtual void SetProtectedPatient(DatabaseManager& manager,
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271 int64_t internalId,
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272 bool isProtected) ORTHANC_OVERRIDE;
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273
225
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274 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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275
225
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276 virtual void UpgradeDatabase(DatabaseManager& manager,
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277 uint32_t targetVersion,
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278 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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279
225
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280 virtual void ClearMainDicomTags(DatabaseManager& manager,
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281 int64_t internalId) ORTHANC_OVERRIDE;
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282
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283 // For unit testing only!
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284 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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285
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286 // For unit testing only!
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287 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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288
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289 // For unit testing only!
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290 virtual bool GetParentPublicId(std::string& target,
225
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291 DatabaseManager& manager,
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292 int64_t id);
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293
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294 // For unit tests only!
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295 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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296 DatabaseManager& manager,
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297 int64_t id);
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298
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299 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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300 // New primitive since Orthanc 1.5.2
203
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301 virtual void LookupResources(IDatabaseBackendOutput& output,
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302 DatabaseManager& manager,
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303 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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304 OrthancPluginResourceType queryLevel,
391
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305 const std::set<std::string>& withLabels,
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306 const std::set<std::string>& withoutLabels,
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307 uint32_t limit,
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308 bool requestSomeInstance) ORTHANC_OVERRIDE;
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309 #endif
75
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310
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311 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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312 // New primitive since Orthanc 1.5.2
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313 virtual void SetResourcesContent(
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314 DatabaseManager& manager,
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315 uint32_t countIdentifierTags,
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316 const OrthancPluginResourcesContentTags* identifierTags,
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317 uint32_t countMainDicomTags,
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318 const OrthancPluginResourcesContentTags* mainDicomTags,
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319 uint32_t countMetadata,
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320 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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321 #endif
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322
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323 // New primitive since Orthanc 1.5.2
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324 virtual void GetChildrenMetadata(std::list<std::string>& target,
225
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325 DatabaseManager& manager,
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326 int64_t resourceId,
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327 int32_t metadata) ORTHANC_OVERRIDE;
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328
225
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329 virtual void TagMostRecentPatient(DatabaseManager& manager,
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330 int64_t patient) ORTHANC_OVERRIDE;
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331
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332 // New primitive since Orthanc 1.5.4
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333 virtual bool LookupResourceAndParent(int64_t& id,
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334 OrthancPluginResourceType& type,
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335 std::string& parentPublicId,
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336 DatabaseManager& manager,
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337 const char* publicId) ORTHANC_OVERRIDE;
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338
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339 // New primitive since Orthanc 1.5.4
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340 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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341 DatabaseManager& manager,
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342 int64_t id) ORTHANC_OVERRIDE;
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343
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344 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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345 {
218
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346 // This extension is available in PostgreSQL and MySQL, but is
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347 // emulated by "CreateInstanceGeneric()" in SQLite
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348 return false;
202
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349 }
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350
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351 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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352 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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353 DatabaseManager& manager,
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354 const char* hashPatient,
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355 const char* hashStudy,
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356 const char* hashSeries,
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357 const char* hashInstance) ORTHANC_OVERRIDE
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358 {
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359 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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360 }
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361 #endif
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362
271
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363 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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364 // This function corresponds to
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365 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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366 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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367 DatabaseManager& manager,
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368 const char* hashPatient,
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369 const char* hashStudy,
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370 const char* hashSeries,
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371 const char* hashInstance);
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372 #endif
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373
237
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374 bool LookupGlobalIntegerProperty(int& target /*out*/,
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375 DatabaseManager& manager,
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376 const char* serverIdentifier,
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377 int32_t property);
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378
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379 void SetGlobalIntegerProperty(DatabaseManager& manager,
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380 const char* serverIdentifier,
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381 int32_t property,
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382 int value);
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383
391
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384 virtual void AddLabel(int64_t resource,
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385 const std::string& label) ORTHANC_OVERRIDE;
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386
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387 virtual void RemoveLabel(int64_t resource,
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388 const std::string& label) ORTHANC_OVERRIDE;
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389
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390 virtual void ListLabels(std::set<std::string>& target,
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391 int64_t resource) ORTHANC_OVERRIDE;
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392
234
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393 /**
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394 * "maxDatabaseRetries" is to handle
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395 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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396 * collision multiple writers. "countConnections" and
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397 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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398 **/
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399 static void Register(IndexBackend* backend,
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400 size_t countConnections,
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401 unsigned int maxDatabaseRetries);
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402
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403 static void Finalize();
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404
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405 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend);
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406 };
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407 }