Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4562:e19f11e08226 db-changes
cont
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 05 Mar 2021 15:37:53 +0100 |
| parents | 02510325d869 |
| children | bb1c365f9e44 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
| 0 | 64 boost::mutex mutex_; |
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65 boost::thread flushThread_; |
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66 boost::thread unstableResourcesMonitorThread_; |
| 0 | 67 |
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68 std::unique_ptr<Listener> listener_; |
| 1247 | 69 IDatabaseWrapper& db_; |
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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71 |
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72 uint64_t maximumStorageSize_; |
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73 unsigned int maximumPatients_; |
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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75 |
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76 static void FlushThread(ServerIndex* that, |
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77 unsigned int threadSleep); |
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78 |
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79 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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80 unsigned int threadSleep); |
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81 |
| 4554 | 82 // A transaction must be running |
| 83 static void MainDicomTagsToJson(Json::Value& result, | |
| 84 IDatabaseWrapper& db, | |
| 85 int64_t resourceId, | |
| 86 ResourceType resourceType); | |
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87 |
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88 bool IsRecyclingNeeded(uint64_t instanceSize); |
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89 |
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90 void Recycle(uint64_t instanceSize, |
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91 const std::string& newPatientId); |
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92 |
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93 void StandaloneRecycling(); |
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94 |
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95 void MarkAsUnstable(int64_t id, |
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96 Orthanc::ResourceType type, |
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97 const std::string& publicId); |
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98 |
| 1237 | 99 void LogChange(int64_t internalId, |
| 100 ChangeType changeType, | |
| 101 ResourceType resourceType, | |
| 1297 | 102 const std::string& publicId); |
| 1237 | 103 |
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104 void SignalNewResource(ChangeType changeType, |
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105 ResourceType level, |
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106 const std::string& publicId, |
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107 int64_t internalId); |
| 1237 | 108 |
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109 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property); |
| 1299 | 110 |
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111 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 112 const DatabaseLookup& source, |
| 113 ResourceType level) const; | |
| 114 | |
| 4554 | 115 // A transaction must be running |
| 116 static SeriesStatus GetSeriesStatus(IDatabaseWrapper& db, | |
| 117 int64_t id, | |
| 118 int64_t expectedNumberOfInstances); | |
| 119 | |
| 120 bool IsUnstableResource(int64_t id); | |
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121 |
| 0 | 122 public: |
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123 ServerIndex(ServerContext& context, |
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124 IDatabaseWrapper& database, |
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125 unsigned int threadSleep); |
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127 ~ServerIndex(); |
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128 |
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129 void Stop(); |
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130 |
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131 uint64_t GetMaximumStorageSize() const |
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132 { |
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133 return maximumStorageSize_; |
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134 } |
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135 |
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136 uint64_t GetMaximumPatientCount() const |
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137 { |
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138 return maximumPatients_; |
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139 } |
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140 |
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141 // "size == 0" means no limit on the storage size |
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142 void SetMaximumStorageSize(uint64_t size); |
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143 |
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144 // "count == 0" means no limit on the number of patients |
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145 void SetMaximumPatientCount(unsigned int count); |
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146 |
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147 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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148 const DicomMap& dicomSummary, |
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149 const Attachments& attachments, |
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150 const MetadataMap& metadata, |
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151 const DicomInstanceOrigin& origin, |
| 4499 | 152 bool overwrite, |
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153 bool hasTransferSyntax, |
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154 DicomTransferSyntax transferSyntax, |
| 4499 | 155 bool hasPixelDataOffset, |
| 156 uint64_t pixelDataOffset); | |
| 0 | 157 |
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158 bool DeleteResource(Json::Value& target /* out */, |
| 212 | 159 const std::string& uuid, |
| 160 ResourceType expectedType); | |
| 0 | 161 |
| 231 | 162 void LogExportedResource(const std::string& publicId, |
| 163 const std::string& remoteModality); | |
| 164 | |
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165 void SetProtectedPatient(const std::string& publicId, |
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166 bool isProtected); |
| 304 | 167 |
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168 void SetMetadata(const std::string& publicId, |
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169 MetadataType type, |
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170 const std::string& value); |
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171 |
| 438 | 172 void DeleteMetadata(const std::string& publicId, |
| 173 MetadataType type); | |
| 174 | |
| 310 | 175 uint64_t IncrementGlobalSequence(GlobalProperty sequence); |
| 315 | 176 |
| 177 void LogChange(ChangeType changeType, | |
| 178 const std::string& publicId); | |
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179 |
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180 void DeleteChanges(); |
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181 |
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182 void DeleteExportedResources(); |
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183 |
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184 StoreStatus AddAttachment(const FileInfo& attachment, |
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185 const std::string& publicId); |
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186 |
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187 void DeleteAttachment(const std::string& publicId, |
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188 FileContentType type); |
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189 |
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190 void SetGlobalProperty(GlobalProperty property, |
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191 const std::string& value); |
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192 |
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193 // Only applicable at the instance level |
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194 bool GetAllMainDicomTags(DicomMap& result, |
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195 const std::string& instancePublicId); |
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196 |
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197 bool LookupResourceType(ResourceType& type, |
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198 const std::string& publicId); |
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199 |
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200 unsigned int GetDatabaseVersion(); |
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201 |
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202 bool LookupParent(std::string& target, |
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203 const std::string& publicId, |
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204 ResourceType parentType); |
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205 |
| 4205 | 206 void ReconstructInstance(const ParsedDicomFile& dicom); |
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207 |
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208 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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209 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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210 const DatabaseLookup& lookup, |
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211 ResourceType queryLevel, |
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212 size_t limit); |
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213 |
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214 |
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215 |
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216 /*** |
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217 ** PROTOTYPING FOR DB REFACTORING BELOW |
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218 ***/ |
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219 |
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220 public: |
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221 class ReadOnlyTransaction : public boost::noncopyable |
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222 { |
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223 protected: |
| 4554 | 224 IDatabaseWrapper& db_; |
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225 |
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226 public: |
| 4555 | 227 explicit ReadOnlyTransaction(IDatabaseWrapper& db) : |
| 4554 | 228 db_(db) |
| 229 { | |
| 230 } | |
| 231 | |
| 232 /** | |
| 233 * Higher-level constructions | |
| 234 **/ | |
| 235 | |
| 236 SeriesStatus GetSeriesStatus(int64_t id, | |
| 237 int64_t expectedNumberOfInstances) | |
| 238 { | |
| 239 return ServerIndex::GetSeriesStatus(db_, id, expectedNumberOfInstances); | |
| 240 } | |
| 241 | |
| 242 void MainDicomTagsToJson(Json::Value& result, | |
| 243 int64_t resourceId, | |
| 244 ResourceType resourceType) | |
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245 { |
| 4554 | 246 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType); |
| 247 } | |
| 248 | |
| 249 /** | |
| 250 * Read-only methods from "IDatabaseWrapper" | |
| 251 **/ | |
| 252 | |
| 4562 | 253 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 254 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 255 const std::vector<DatabaseConstraint>& lookup, | |
| 256 ResourceType queryLevel, | |
| 257 size_t limit) | |
| 258 { | |
| 259 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 260 } | |
| 261 | |
| 4554 | 262 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 263 int64_t id) | |
| 264 { | |
| 265 db_.GetAllMetadata(target, id); | |
| 4555 | 266 } |
| 267 | |
| 268 void GetAllPublicIds(std::list<std::string>& target, | |
| 269 ResourceType resourceType) | |
| 270 { | |
| 271 return db_.GetAllPublicIds(target, resourceType); | |
| 272 } | |
| 273 | |
| 274 void GetAllPublicIds(std::list<std::string>& target, | |
| 275 ResourceType resourceType, | |
| 276 size_t since, | |
| 277 size_t limit) | |
| 278 { | |
| 279 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 280 } | |
| 4554 | 281 |
| 4558 | 282 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 283 bool& done /*out*/, | |
| 284 int64_t since, | |
| 285 uint32_t maxResults) | |
| 286 { | |
| 287 db_.GetChanges(target, done, since, maxResults); | |
| 288 } | |
| 289 | |
| 4559 | 290 void GetChildrenInternalId(std::list<int64_t>& target, |
| 291 int64_t id) | |
| 292 { | |
| 293 db_.GetChildrenInternalId(target, id); | |
| 294 } | |
| 295 | |
| 4554 | 296 void GetChildrenPublicId(std::list<std::string>& target, |
| 297 int64_t id) | |
| 298 { | |
| 299 db_.GetChildrenPublicId(target, id); | |
| 300 } | |
| 301 | |
| 4558 | 302 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 303 bool& done /*out*/, | |
| 304 int64_t since, | |
| 305 uint32_t maxResults) | |
| 306 { | |
| 307 return db_.GetExportedResources(target, done, since, maxResults); | |
| 308 } | |
| 309 | |
| 310 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 311 { | |
| 312 db_.GetLastChange(target); | |
| 313 } | |
| 314 | |
| 315 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 316 { | |
| 317 return db_.GetLastExportedResource(target); | |
| 318 } | |
| 319 | |
| 320 int64_t GetLastChangeIndex() | |
| 321 { | |
| 322 return db_.GetLastChangeIndex(); | |
| 323 } | |
| 324 | |
| 4554 | 325 void GetMainDicomTags(DicomMap& map, |
| 326 int64_t id) | |
| 327 { | |
| 328 db_.GetMainDicomTags(map, id); | |
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329 } |
| 4558 | 330 |
| 4559 | 331 std::string GetPublicId(int64_t resourceId) |
| 332 { | |
| 333 return db_.GetPublicId(resourceId); | |
| 334 } | |
| 335 | |
| 4558 | 336 uint64_t GetResourceCount(ResourceType resourceType) |
| 337 { | |
| 338 return db_.GetResourceCount(resourceType); | |
| 339 } | |
| 340 | |
| 4559 | 341 ResourceType GetResourceType(int64_t resourceId) |
| 342 { | |
| 343 return db_.GetResourceType(resourceId); | |
| 344 } | |
| 345 | |
| 4558 | 346 uint64_t GetTotalCompressedSize() |
| 347 { | |
| 348 return db_.GetTotalCompressedSize(); | |
| 349 } | |
| 350 | |
| 351 uint64_t GetTotalUncompressedSize() | |
| 352 { | |
| 353 return db_.GetTotalUncompressedSize(); | |
| 354 } | |
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355 |
| 4559 | 356 bool IsProtectedPatient(int64_t internalId) |
| 357 { | |
| 358 return db_.IsProtectedPatient(internalId); | |
| 359 } | |
| 360 | |
| 4560 | 361 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 362 int64_t id) | |
| 363 { | |
| 364 db_.ListAvailableAttachments(target, id); | |
| 365 } | |
| 366 | |
| 4554 | 367 bool LookupAttachment(FileInfo& attachment, |
| 368 int64_t id, | |
| 369 FileContentType contentType) | |
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370 { |
| 4554 | 371 return db_.LookupAttachment(attachment, id, contentType); |
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372 } |
| 4554 | 373 |
| 4562 | 374 bool LookupGlobalProperty(std::string& target, |
| 375 GlobalProperty property) | |
| 376 { | |
| 377 return db_.LookupGlobalProperty(target, property); | |
| 378 } | |
| 379 | |
| 4560 | 380 bool LookupMetadata(std::string& target, |
| 381 int64_t id, | |
| 382 MetadataType type) | |
| 383 { | |
| 384 return db_.LookupMetadata(target, id, type); | |
| 385 } | |
| 386 | |
| 387 bool LookupParent(int64_t& parentId, | |
| 388 int64_t resourceId) | |
| 389 { | |
| 390 return db_.LookupParent(parentId, resourceId); | |
| 391 } | |
| 392 | |
| 4554 | 393 bool LookupResource(int64_t& id, |
| 394 ResourceType& type, | |
| 395 const std::string& publicId) | |
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396 { |
| 4554 | 397 return db_.LookupResource(id, type, publicId); |
| 398 } | |
| 399 | |
| 400 bool LookupResourceAndParent(int64_t& id, | |
| 401 ResourceType& type, | |
| 402 std::string& parentPublicId, | |
| 403 const std::string& publicId) | |
| 404 { | |
| 405 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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406 } |
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407 }; |
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408 |
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409 |
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410 class ReadWriteTransaction : public ReadOnlyTransaction |
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411 { |
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412 public: |
| 4555 | 413 explicit ReadWriteTransaction(IDatabaseWrapper& db) : |
| 4554 | 414 ReadOnlyTransaction(db) |
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415 { |
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416 } |
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417 |
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418 }; |
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419 |
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420 |
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421 class IReadOnlyOperations : public boost::noncopyable |
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422 { |
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423 public: |
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424 virtual ~IReadOnlyOperations() |
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425 { |
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426 } |
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427 |
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428 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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429 }; |
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430 |
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431 |
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432 class IReadWriteOperations : public boost::noncopyable |
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433 { |
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434 public: |
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435 virtual ~IReadWriteOperations() |
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436 { |
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437 } |
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438 |
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439 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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440 }; |
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441 |
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442 private: |
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443 void ApplyInternal(IReadOnlyOperations* readOperations, |
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444 IReadWriteOperations* writeOperations); |
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445 |
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446 unsigned int maxRetries_; |
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447 |
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448 public: |
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449 void Apply(IReadOnlyOperations& operations); |
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450 |
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parents:
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451 void Apply(IReadWriteOperations& operations); |
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452 |
| 4554 | 453 bool ExpandResource(Json::Value& target, |
| 454 const std::string& publicId, | |
| 455 ResourceType level); | |
| 456 | |
| 457 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 458 const std::string& publicId, | |
| 459 ResourceType level); | |
| 4555 | 460 |
| 461 void GetAllUuids(std::list<std::string>& target, | |
| 462 ResourceType resourceType); | |
| 463 | |
| 464 void GetAllUuids(std::list<std::string>& target, | |
| 465 ResourceType resourceType, | |
| 466 size_t since, | |
| 467 size_t limit); | |
| 468 | |
| 4558 | 469 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 470 /* out */ uint64_t& uncompressedSize, | |
| 471 /* out */ uint64_t& countPatients, | |
| 472 /* out */ uint64_t& countStudies, | |
| 473 /* out */ uint64_t& countSeries, | |
| 474 /* out */ uint64_t& countInstances); | |
| 475 | |
| 4555 | 476 bool LookupAttachment(FileInfo& attachment, |
| 477 const std::string& instancePublicId, | |
| 478 FileContentType contentType); | |
| 4558 | 479 |
| 480 void GetChanges(Json::Value& target, | |
| 481 int64_t since, | |
| 482 unsigned int maxResults); | |
| 483 | |
| 484 void GetLastChange(Json::Value& target); | |
| 485 | |
| 486 void GetExportedResources(Json::Value& target, | |
| 487 int64_t since, | |
| 488 unsigned int maxResults); | |
| 489 | |
| 490 void GetLastExportedResource(Json::Value& target); | |
| 491 | |
| 4559 | 492 bool IsProtectedPatient(const std::string& publicId); |
| 493 | |
| 494 void GetChildren(std::list<std::string>& result, | |
| 495 const std::string& publicId); | |
| 496 | |
| 497 void GetChildInstances(std::list<std::string>& result, | |
| 498 const std::string& publicId); | |
| 4560 | 499 |
| 500 bool LookupMetadata(std::string& target, | |
| 501 const std::string& publicId, | |
| 502 ResourceType expectedType, | |
| 503 MetadataType type); | |
| 504 | |
| 505 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 506 const std::string& publicId, | |
| 507 ResourceType expectedType); | |
| 508 | |
| 509 bool LookupParent(std::string& target, | |
| 510 const std::string& publicId); | |
| 4562 | 511 |
| 512 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 513 /* out */ uint64_t& diskSize, | |
| 514 /* out */ uint64_t& uncompressedSize, | |
| 515 /* out */ unsigned int& countStudies, | |
| 516 /* out */ unsigned int& countSeries, | |
| 517 /* out */ unsigned int& countInstances, | |
| 518 /* out */ uint64_t& dicomDiskSize, | |
| 519 /* out */ uint64_t& dicomUncompressedSize, | |
| 520 const std::string& publicId); | |
| 521 | |
| 522 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 523 ResourceType level, | |
| 524 const DicomTag& tag, | |
| 525 const std::string& value); | |
| 526 | |
| 527 bool LookupGlobalProperty(std::string& value, | |
| 528 GlobalProperty property); | |
| 529 | |
| 530 std::string GetGlobalProperty(GlobalProperty property, | |
| 531 const std::string& defaultValue); | |
| 532 | |
| 533 bool GetMainDicomTags(DicomMap& result, | |
| 534 const std::string& publicId, | |
| 535 ResourceType expectedType, | |
| 536 ResourceType levelOfInterest); | |
| 0 | 537 }; |
| 538 } |