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annotate OrthancServer/ServerIndex.h @ 3006:0e1755e5efd0

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DicomMap::ExtractMainDicomTags()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 13 Dec 2018 12:37:10 +0100
parents 96089d1aba4d
children d207f6ac1f86 4e43e67f8ecf
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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34 #pragma once
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36 #include <boost/thread.hpp>
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37 #include <boost/noncopyable.hpp>
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38 #include "../Core/Cache/LeastRecentlyUsedIndex.h"
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39 #include "../Core/SQLite/Connection.h"
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40 #include "../Core/DicomFormat/DicomMap.h"
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41 #include "ServerEnumerations.h"
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42
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43 #include "IDatabaseWrapper.h"
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44
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45 namespace Orthanc
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46 {
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47 class LookupResource;
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48 class ServerContext;
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49 class DicomInstanceToStore;
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50 class ParsedDicomFile;
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51
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52 class ServerIndex : public boost::noncopyable
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53 {
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54 public:
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55 typedef std::list<FileInfo> Attachments;
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56 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap;
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57
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58 private:
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59 class Listener;
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60 class Transaction;
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61 class UnstableResourcePayload;
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63 bool done_;
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64 boost::mutex mutex_;
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65 boost::thread flushThread_;
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66 boost::thread unstableResourcesMonitorThread_;
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68 std::auto_ptr<Listener> listener_;
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69 IDatabaseWrapper& db_;
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_;
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72 uint64_t currentStorageSize_;
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73 uint64_t maximumStorageSize_;
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74 unsigned int maximumPatients_;
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75 bool overwrite_;
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77 static void FlushThread(ServerIndex* that,
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78 unsigned int threadSleep);
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79
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80 static void UnstableResourcesMonitorThread(ServerIndex* that,
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81 unsigned int threadSleep);
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82
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83 void MainDicomTagsToJson(Json::Value& result,
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84 int64_t resourceId,
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85 ResourceType resourceType);
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86
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87 SeriesStatus GetSeriesStatus(int64_t id);
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88
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89 bool IsRecyclingNeeded(uint64_t instanceSize);
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91 void Recycle(uint64_t instanceSize,
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92 const std::string& newPatientId);
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93
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94 void StandaloneRecycling();
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95
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96 void MarkAsUnstable(int64_t id,
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97 Orthanc::ResourceType type,
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98 const std::string& publicId);
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99
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100 void GetStatisticsInternal(/* out */ uint64_t& diskSize,
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101 /* out */ uint64_t& uncompressedSize,
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102 /* out */ unsigned int& countStudies,
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103 /* out */ unsigned int& countSeries,
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104 /* out */ unsigned int& countInstances,
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105 /* out */ uint64_t& dicomDiskSize,
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106 /* out */ uint64_t& dicomUncompressedSize,
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107 /* in */ int64_t id,
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108 /* in */ ResourceType type);
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109
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110 bool GetMetadataAsInteger(int64_t& result,
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111 int64_t id,
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112 MetadataType type);
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113
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114 void LogChange(int64_t internalId,
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115 ChangeType changeType,
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116 ResourceType resourceType,
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117 const std::string& publicId);
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118
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119 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property);
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120
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121 int64_t CreateResource(const std::string& publicId,
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122 ResourceType type);
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123
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124 void SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata,
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125 int64_t instance,
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126 MetadataType metadata,
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127 const std::string& value);
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128
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129 public:
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130 ServerIndex(ServerContext& context,
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131 IDatabaseWrapper& database,
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132 unsigned int threadSleep);
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134 ~ServerIndex();
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135
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136 void Stop();
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137
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138 uint64_t GetMaximumStorageSize() const
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139 {
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140 return maximumStorageSize_;
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141 }
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142
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143 uint64_t GetMaximumPatientCount() const
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144 {
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145 return maximumPatients_;
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146 }
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147
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148 // "size == 0" means no limit on the storage size
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149 void SetMaximumStorageSize(uint64_t size);
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150
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151 // "count == 0" means no limit on the number of patients
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152 void SetMaximumPatientCount(unsigned int count);
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153
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154 void SetOverwriteInstances(bool overwrite);
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155
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156 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
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157 DicomInstanceToStore& instance,
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158 const Attachments& attachments);
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159
238
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160 void ComputeStatistics(Json::Value& target);
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161
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162 bool LookupResource(Json::Value& result,
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163 const std::string& publicId,
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164 ResourceType expectedType);
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165
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166 bool LookupAttachment(FileInfo& attachment,
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167 const std::string& instanceUuid,
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168 FileContentType contentType);
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169
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170 void GetAllUuids(std::list<std::string>& target,
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171 ResourceType resourceType);
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172
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173 void GetAllUuids(std::list<std::string>& target,
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174 ResourceType resourceType,
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175 size_t since,
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176 size_t limit);
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177
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178 bool DeleteResource(Json::Value& target /* out */,
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179 const std::string& uuid,
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180 ResourceType expectedType);
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181
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182 void GetChanges(Json::Value& target,
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183 int64_t since,
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184 unsigned int maxResults);
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185
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186 void GetLastChange(Json::Value& target);
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187
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188 void LogExportedResource(const std::string& publicId,
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189 const std::string& remoteModality);
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190
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191 void GetExportedResources(Json::Value& target,
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192 int64_t since,
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193 unsigned int maxResults);
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194
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195 void GetLastExportedResource(Json::Value& target);
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196
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197 bool IsProtectedPatient(const std::string& publicId);
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198
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199 void SetProtectedPatient(const std::string& publicId,
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200 bool isProtected);
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201
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202 void GetChildren(std::list<std::string>& result,
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203 const std::string& publicId);
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204
304
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205 void GetChildInstances(std::list<std::string>& result,
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206 const std::string& publicId);
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207
306
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208 void SetMetadata(const std::string& publicId,
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209 MetadataType type,
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210 const std::string& value);
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211
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212 void DeleteMetadata(const std::string& publicId,
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213 MetadataType type);
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214
306
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215 bool LookupMetadata(std::string& target,
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216 const std::string& publicId,
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217 MetadataType type);
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218
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219 void ListAvailableMetadata(std::list<MetadataType>& target,
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220 const std::string& publicId);
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221
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222 bool GetMetadata(Json::Value& target,
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223 const std::string& publicId);
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224
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225 void ListAvailableAttachments(std::list<FileContentType>& target,
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226 const std::string& publicId,
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227 ResourceType expectedType);
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228
306
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229 bool LookupParent(std::string& target,
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230 const std::string& publicId);
310
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231
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232 uint64_t IncrementGlobalSequence(GlobalProperty sequence);
315
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233
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234 void LogChange(ChangeType changeType,
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235 const std::string& publicId);
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236
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237 void DeleteChanges();
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238
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239 void DeleteExportedResources();
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240
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241 void GetStatistics(Json::Value& target,
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242 const std::string& publicId);
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243
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244 void GetStatistics(/* out */ uint64_t& diskSize,
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245 /* out */ uint64_t& uncompressedSize,
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246 /* out */ unsigned int& countStudies,
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247 /* out */ unsigned int& countSeries,
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248 /* out */ unsigned int& countInstances,
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249 /* out */ uint64_t& dicomDiskSize,
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250 /* out */ uint64_t& dicomUncompressedSize,
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251 const std::string& publicId);
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252
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253 void LookupIdentifierExact(std::list<std::string>& result,
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254 ResourceType level,
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255 const DicomTag& tag,
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256 const std::string& value);
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257
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258 StoreStatus AddAttachment(const FileInfo& attachment,
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259 const std::string& publicId);
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260
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261 void DeleteAttachment(const std::string& publicId,
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262 FileContentType type);
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263
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264 void SetGlobalProperty(GlobalProperty property,
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265 const std::string& value);
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266
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267 bool LookupGlobalProperty(std::string& value,
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268 GlobalProperty property);
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269
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270 std::string GetGlobalProperty(GlobalProperty property,
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271 const std::string& defaultValue);
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272
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273 bool GetMainDicomTags(DicomMap& result,
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274 const std::string& publicId,
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275 ResourceType expectedType,
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276 ResourceType levelOfInterest);
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277
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278 // Only applicable at the instance level
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279 bool GetAllMainDicomTags(DicomMap& result,
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280 const std::string& instancePublicId);
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281
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282 bool LookupResourceType(ResourceType& type,
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283 const std::string& publicId);
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284
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285 unsigned int GetDatabaseVersion();
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286
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287 void FindCandidates(std::vector<std::string>& resources,
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288 std::vector<std::string>& instances,
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289 const ::Orthanc::LookupResource& lookup);
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290
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291 bool LookupParent(std::string& target,
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292 const std::string& publicId,
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293 ResourceType parentType);
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294
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295 void ReconstructInstance(ParsedDicomFile& dicom);
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296 };
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297 }