Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4706:dbee8bd8ee1f
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 22 Jun 2021 09:13:03 +0200 |
parents | 45bce660ce3a |
children | 979ae3ea3381 |
rev | line source |
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4297 | 1 /** |
786 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
786 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
786 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
786 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
786 | 20 **/ |
21 | |
22 | |
23 #pragma once | |
24 | |
790 | 25 #include "ParsedDicomFile.h" |
786 | 26 |
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27 #include <list> |
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28 |
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29 |
786 | 30 namespace Orthanc |
31 { | |
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32 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable |
786 | 33 { |
34 /** | |
35 * Process: | |
36 * (1) Remove private tags | |
37 * (2) Remove tags specified by the user | |
38 * (3) Replace tags | |
39 **/ | |
40 | |
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41 public: |
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42 enum TagOperation |
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43 { |
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44 TagOperation_Keep, |
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45 TagOperation_Remove |
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46 }; |
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47 |
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48 class IDicomIdentifierGenerator : public boost::noncopyable |
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DicomModification::SetDicomIdentifierGenerator()
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49 { |
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DicomModification::SetDicomIdentifierGenerator()
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50 public: |
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DicomModification::SetDicomIdentifierGenerator()
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51 virtual ~IDicomIdentifierGenerator() |
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52 { |
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DicomModification::SetDicomIdentifierGenerator()
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53 } |
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DicomModification::SetDicomIdentifierGenerator()
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54 |
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55 virtual bool Apply(std::string& target, |
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56 const std::string& sourceIdentifier, |
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57 ResourceType level, |
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58 const DicomMap& sourceDicom) = 0; |
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59 }; |
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60 |
786 | 61 private: |
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62 class RelationshipsVisitor; |
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63 |
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64 class DicomTagRange |
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65 { |
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66 private: |
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67 uint16_t groupFrom_; |
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68 uint16_t groupTo_; |
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69 uint16_t elementFrom_; |
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70 uint16_t elementTo_; |
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71 |
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72 public: |
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73 DicomTagRange(uint16_t groupFrom, |
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74 uint16_t groupTo, |
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75 uint16_t elementFrom, |
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76 uint16_t elementTo); |
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77 |
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78 uint16_t GetGroupFrom() const |
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79 { |
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80 return groupFrom_; |
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81 } |
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82 |
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83 uint16_t GetGroupTo() const |
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84 { |
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85 return groupTo_; |
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86 } |
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87 |
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88 uint16_t GetElementFrom() const |
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89 { |
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90 return elementFrom_; |
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91 } |
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92 |
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93 uint16_t GetElementTo() const |
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94 { |
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95 return elementTo_; |
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96 } |
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97 |
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98 bool Contains(const DicomTag& tag) const; |
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99 }; |
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100 |
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101 class SequenceReplacement : public boost::noncopyable |
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102 { |
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103 private: |
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104 DicomPath path_; |
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105 Json::Value value_; |
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106 |
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107 public: |
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108 SequenceReplacement(const DicomPath& path, |
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109 const Json::Value& value) : |
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110 path_(path), |
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111 value_(value) |
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112 { |
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113 } |
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114 |
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115 const DicomPath& GetPath() const |
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116 { |
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117 return path_; |
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118 } |
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119 |
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120 const Json::Value& GetValue() const |
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121 { |
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122 return value_; |
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123 } |
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124 }; |
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125 |
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126 typedef std::set<DicomTag> SetOfTags; |
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127 typedef std::map<DicomTag, Json::Value*> Replacements; |
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128 typedef std::list<DicomTagRange> RemovedRanges; |
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129 typedef std::list<DicomPath> ListOfPaths; |
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130 typedef std::list<SequenceReplacement*> SequenceReplacements; |
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131 |
788 | 132 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; |
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133 |
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134 SetOfTags removals_; |
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135 SetOfTags clearings_; |
786 | 136 Replacements replacements_; |
137 bool removePrivateTags_; | |
788 | 138 ResourceType level_; |
786 | 139 UidMap uidMap_; |
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140 SetOfTags privateTagsToKeep_; |
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141 bool allowManualIdentifiers_; |
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142 bool keepStudyInstanceUid_; |
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143 bool keepSeriesInstanceUid_; |
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144 bool keepSopInstanceUid_; |
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145 bool updateReferencedRelationships_; |
2721 | 146 bool isAnonymization_; |
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147 DicomMap currentSource_; |
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148 std::string privateCreator_; |
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149 |
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150 IDicomIdentifierGenerator* identifierGenerator_; |
786 | 151 |
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152 // New in Orthanc 1.9.4 |
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153 SetOfTags uids_; |
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154 RemovedRanges removedRanges_; |
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155 ListOfPaths keepSequences_; // Can *possibly* be a path whose prefix is empty |
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156 ListOfPaths removeSequences_; // Must *never* be a path whose prefix is empty |
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157 SequenceReplacements sequenceReplacements_; // Must *never* be a path whose prefix is empty |
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158 |
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159 std::string MapDicomIdentifier(const std::string& original, |
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160 ResourceType level); |
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161 |
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162 void RegisterMappedDicomIdentifier(const std::string& original, |
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163 const std::string& mapped, |
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164 ResourceType level); |
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165 |
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166 void MapDicomTags(ParsedDicomFile& dicom, |
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167 ResourceType level); |
786 | 168 |
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169 void MarkNotOrthancAnonymization(); |
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170 |
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171 void ClearReplacements(); |
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172 |
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173 void CancelReplacement(const DicomTag& tag); |
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174 |
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175 void ReplaceInternal(const DicomTag& tag, |
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176 const Json::Value& value); |
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177 |
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178 void SetupUidsFromOrthanc_1_9_3(); |
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179 |
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180 void SetupAnonymization2008(); |
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181 |
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182 void SetupAnonymization2017c(); |
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183 |
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184 void SetupAnonymization2021b(); |
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185 |
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186 void UnserializeUidMap(ResourceType level, |
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187 const Json::Value& serialized, |
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188 const char* field); |
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189 |
786 | 190 public: |
191 DicomModification(); | |
192 | |
4200 | 193 explicit DicomModification(const Json::Value& serialized); |
2655 | 194 |
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195 ~DicomModification(); |
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196 |
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197 void Keep(const DicomTag& tag); |
786 | 198 |
199 void Remove(const DicomTag& tag); | |
200 | |
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201 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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202 void Clear(const DicomTag& tag); |
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203 |
786 | 204 bool IsRemoved(const DicomTag& tag) const; |
205 | |
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206 bool IsCleared(const DicomTag& tag) const; |
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207 |
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208 // "safeForAnonymization" tells Orthanc that this replacement does |
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209 // not break the anonymization process it implements (for internal use only) |
786 | 210 void Replace(const DicomTag& tag, |
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211 const Json::Value& value, // Encoded using UTF-8 |
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212 bool safeForAnonymization); |
786 | 213 |
214 bool IsReplaced(const DicomTag& tag) const; | |
215 | |
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216 const Json::Value& GetReplacement(const DicomTag& tag) const; |
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217 |
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218 std::string GetReplacementAsString(const DicomTag& tag) const; |
786 | 219 |
220 void SetRemovePrivateTags(bool removed); | |
221 | |
4297 | 222 bool ArePrivateTagsRemoved() const; |
786 | 223 |
788 | 224 void SetLevel(ResourceType level); |
786 | 225 |
4297 | 226 ResourceType GetLevel() const; |
786 | 227 |
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228 void SetupAnonymization(DicomVersion version); |
786 | 229 |
230 void Apply(ParsedDicomFile& toModify); | |
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231 |
4297 | 232 void SetAllowManualIdentifiers(bool check); |
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233 |
4297 | 234 bool AreAllowManualIdentifiers() const; |
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235 |
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236 void ParseModifyRequest(const Json::Value& request); |
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237 |
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238 // "patientNameOverridden" is set to "true" iff. the PatientName |
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239 // (0010,0010) tag is manually replaced, removed, cleared or kept |
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240 void ParseAnonymizationRequest(bool& patientNameOverridden /* out */, |
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241 const Json::Value& request); |
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242 |
4297 | 243 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator); |
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244 |
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245 void Serialize(Json::Value& value) const; |
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246 |
4297 | 247 void SetPrivateCreator(const std::string& privateCreator); |
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248 |
4297 | 249 const std::string& GetPrivateCreator() const; |
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250 |
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251 // New in Orthanc 1.9.4 |
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252 void Keep(const DicomPath& path); |
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253 |
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254 // New in Orthanc 1.9.4 |
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255 void Remove(const DicomPath& path); |
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256 |
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257 // New in Orthanc 1.9.4 |
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258 void Replace(const DicomPath& path, |
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259 const Json::Value& value, // Encoded using UTF-8 |
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260 bool safeForAnonymization); |
786 | 261 }; |
262 } |