annotate Core/DicomParsing/FromDcmtkBridge.cpp @ 2780:d4e81e0a8324

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date Tue, 17 Jul 2018 17:50:03 +0200
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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33
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34 #include "../PrecompiledHeaders.h"
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35
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36 #ifndef NOMINMAX
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37 #define NOMINMAX
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38 #endif
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39
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40 #if !defined(ORTHANC_SANDBOXED)
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41 # error The macro ORTHANC_SANDBOXED must be defined
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42 #endif
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43
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44 #include "FromDcmtkBridge.h"
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45 #include "ToDcmtkBridge.h"
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46 #include "../Logging.h"
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47 #include "../Toolbox.h"
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48 #include "../OrthancException.h"
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50 #if ORTHANC_SANDBOXED == 0
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51 # include "../TemporaryFile.h"
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52 #endif
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53
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54 #include <list>
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55 #include <limits>
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56
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57 #include <boost/lexical_cast.hpp>
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58 #include <boost/filesystem.hpp>
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59 #include <boost/algorithm/string/predicate.hpp>
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60 #include <boost/algorithm/string/join.hpp>
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61
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62 #include <dcmtk/dcmdata/dcdeftag.h>
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63 #include <dcmtk/dcmdata/dcdicent.h>
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64 #include <dcmtk/dcmdata/dcdict.h>
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65 #include <dcmtk/dcmdata/dcfilefo.h>
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66 #include <dcmtk/dcmdata/dcostrmb.h>
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67 #include <dcmtk/dcmdata/dcpixel.h>
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68 #include <dcmtk/dcmdata/dcuid.h>
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69 #include <dcmtk/dcmdata/dcistrmb.h>
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71 #include <dcmtk/dcmdata/dcvrae.h>
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72 #include <dcmtk/dcmdata/dcvras.h>
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73 #include <dcmtk/dcmdata/dcvrat.h>
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74 #include <dcmtk/dcmdata/dcvrcs.h>
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75 #include <dcmtk/dcmdata/dcvrda.h>
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76 #include <dcmtk/dcmdata/dcvrds.h>
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77 #include <dcmtk/dcmdata/dcvrdt.h>
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78 #include <dcmtk/dcmdata/dcvrfd.h>
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79 #include <dcmtk/dcmdata/dcvrfl.h>
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80 #include <dcmtk/dcmdata/dcvris.h>
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81 #include <dcmtk/dcmdata/dcvrlo.h>
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82 #include <dcmtk/dcmdata/dcvrlt.h>
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83 #include <dcmtk/dcmdata/dcvrpn.h>
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84 #include <dcmtk/dcmdata/dcvrsh.h>
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85 #include <dcmtk/dcmdata/dcvrsl.h>
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86 #include <dcmtk/dcmdata/dcvrss.h>
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87 #include <dcmtk/dcmdata/dcvrst.h>
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88 #include <dcmtk/dcmdata/dcvrtm.h>
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89 #include <dcmtk/dcmdata/dcvrui.h>
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90 #include <dcmtk/dcmdata/dcvrul.h>
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91 #include <dcmtk/dcmdata/dcvrus.h>
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92 #include <dcmtk/dcmdata/dcvrut.h>
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93
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94 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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95 # include <EmbeddedResources.h>
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96 #endif
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98 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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99 # include <dcmtk/dcmjpeg/djdecode.h>
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100 #endif
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101
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102 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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103 # include <dcmtk/dcmjpls/djdecode.h>
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104 #endif
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105
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106
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107 namespace Orthanc
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108 {
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109 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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110 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary,
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111 EmbeddedResources::FileResourceId resource)
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112 {
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113 std::string content;
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114 EmbeddedResources::GetFileResource(content, resource);
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115
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116 #if ORTHANC_SANDBOXED == 0
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117 TemporaryFile tmp;
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118 tmp.Write(content);
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119
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120 if (!dictionary.loadDictionary(tmp.GetPath().c_str()))
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121 {
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122 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that "
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123 << "your TEMP directory does not contain special characters.";
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124 throw OrthancException(ErrorCode_InternalError);
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125 }
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126 #else
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127 if (!dictionary.loadFromMemory(content))
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128 {
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129 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that "
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130 << "your TEMP directory does not contain special characters.";
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131 throw OrthancException(ErrorCode_InternalError);
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132 }
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133 #endif
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134 }
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135
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136 #else
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137 static void LoadExternalDictionary(DcmDataDictionary& dictionary,
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138 const std::string& directory,
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139 const std::string& filename)
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140 {
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141 boost::filesystem::path p = directory;
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142 p = p / filename;
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143
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144 LOG(WARNING) << "Loading the external DICOM dictionary " << p;
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145
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146 if (!dictionary.loadDictionary(p.string().c_str()))
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147 {
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148 throw OrthancException(ErrorCode_InternalError);
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149 }
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150 }
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151 #endif
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152
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153
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154 namespace
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155 {
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156 class DictionaryLocker
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157 {
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158 private:
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159 DcmDataDictionary& dictionary_;
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160
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161 public:
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162 DictionaryLocker() : dictionary_(dcmDataDict.wrlock())
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163 {
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164 }
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165
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166 ~DictionaryLocker()
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167 {
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168 dcmDataDict.unlock();
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169 }
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170
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171 DcmDataDictionary& operator*()
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172 {
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173 return dictionary_;
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174 }
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175
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176 DcmDataDictionary* operator->()
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177 {
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178 return &dictionary_;
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179 }
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180 };
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181
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182
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183 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter) \
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184 \
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185 struct converter \
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186 { \
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187 typedef cType CType; \
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188 \
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189 static bool Apply(CType& result, \
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190 DcmElement& element, \
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191 size_t i) \
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192 { \
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193 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \
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194 } \
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195 };
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196
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197 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32)
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198 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16)
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199 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32)
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200 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16)
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201 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32)
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202 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64)
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203
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204
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205 template <typename F>
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206 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element)
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207 {
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208 F f;
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209 typename F::CType value;
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210
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211 if (element.getLength() > sizeof(typename F::CType)
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212 && (element.getLength() % sizeof(typename F::CType)) == 0)
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213 {
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214 size_t count = element.getLength() / sizeof(typename F::CType);
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215 std::vector<std::string> strings;
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216 for (size_t i = 0; i < count; i++) {
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217 if (f.Apply(value, element, i)) {
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218 strings.push_back(boost::lexical_cast<std::string>(value));
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219 }
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220 }
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221 return new DicomValue(boost::algorithm::join(strings, "\\"), false);
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222 }
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223 else if (f.Apply(value, element, 0)) {
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224 return new DicomValue(boost::lexical_cast<std::string>(value), false);
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225 }
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226 else {
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227 return new DicomValue;
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228 }
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229 }
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230
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231 }
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232
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233
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234 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary)
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235 {
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236 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER;
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237
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238 {
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239 DictionaryLocker locker;
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240
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241 locker->clear();
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242
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243 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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244 LOG(INFO) << "Loading the embedded dictionaries";
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245 /**
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246 * Do not load DICONDE dictionary, it breaks the other tags. The
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247 * command "strace storescu 2>&1 |grep dic" shows that DICONDE
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248 * dictionary is not loaded by storescu.
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249 **/
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250 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE);
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251
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252 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM);
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253
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254 if (loadPrivateDictionary)
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255 {
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256 LOG(INFO) << "Loading the embedded dictionary of private tags";
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257 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE);
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258 }
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259 else
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260 {
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261 LOG(INFO) << "The dictionary of private tags has not been loaded";
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262 }
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263
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264 #elif defined(__linux__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) || defined(__OpenBSD__)
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265 std::string path = DCMTK_DICTIONARY_DIR;
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266
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267 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE);
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268 if (env != NULL)
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269 {
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270 path = std::string(env);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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271 }
1656
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272
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273 LoadExternalDictionary(*locker, path, "dicom.dic");
2151
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parents: 2143
diff changeset
274
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2143
diff changeset
275 if (loadPrivateDictionary)
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2143
diff changeset
276 {
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
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diff changeset
277 LoadExternalDictionary(*locker, path, "private.dic");
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2143
diff changeset
278 }
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2143
diff changeset
279 else
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
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parents: 2143
diff changeset
280 {
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
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diff changeset
281 LOG(INFO) << "The dictionary of private tags has not been loaded";
8cbb55089a1d New configuration option: "LoadPrivateDictionary"
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diff changeset
282 }
1656
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283
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diff changeset
284 #else
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285 #error Support your platform here
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286 #endif
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287 }
1656
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diff changeset
288
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diff changeset
289 /* make sure data dictionary is loaded */
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diff changeset
290 if (!dcmDataDict.isDictionaryLoaded())
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diff changeset
291 {
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292 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE;
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293 throw OrthancException(ErrorCode_InternalError);
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diff changeset
294 }
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diff changeset
295
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diff changeset
296 {
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diff changeset
297 // Test the dictionary with a simple DICOM tag
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298 DcmTag key(0x0010, 0x1030); // This is PatientWeight
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299 if (key.getEVR() != EVR_DS)
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diff changeset
300 {
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301 LOG(ERROR) << "The DICOM dictionary has not been correctly read";
d3ba98d6b6e9 refactoring
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diff changeset
302 throw OrthancException(ErrorCode_InternalError);
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parents: 1655
diff changeset
303 }
d3ba98d6b6e9 refactoring
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parents: 1655
diff changeset
304 }
d3ba98d6b6e9 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
305 }
d3ba98d6b6e9 refactoring
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diff changeset
306
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diff changeset
307
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
308 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag,
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
309 ValueRepresentation vr,
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5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
310 const std::string& name,
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
311 unsigned int minMultiplicity,
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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diff changeset
312 unsigned int maxMultiplicity,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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diff changeset
313 const std::string& privateCreator)
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
314 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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parents: 1656
diff changeset
315 if (minMultiplicity < 1)
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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parents: 1656
diff changeset
316 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
317 throw OrthancException(ErrorCode_ParameterOutOfRange);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
318 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
319
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
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parents: 1739
diff changeset
320 bool arbitrary = false;
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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parents: 1656
diff changeset
321 if (maxMultiplicity == 0)
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
322 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
323 maxMultiplicity = DcmVariableVM;
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
324 arbitrary = true;
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
325 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
326 else if (maxMultiplicity < minMultiplicity)
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
327 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
328 throw OrthancException(ErrorCode_ParameterOutOfRange);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
329 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
330
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
331 DcmEVR evr = ToDcmtkBridge::Convert(vr);
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
332
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
333 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " "
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
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parents: 1739
diff changeset
334 << name << " (multiplicity: " << minMultiplicity << "-"
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
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parents: 1739
diff changeset
335 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")";
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
336
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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diff changeset
337 std::auto_ptr<DcmDictEntry> entry;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
338 if (privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
339 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
340 if (tag.GetGroup() % 2 == 1)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
341 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
342 char buf[128];
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
343 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), "
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
344 "but no private creator was associated with it",
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
345 tag.GetGroup(), tag.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
346 LOG(WARNING) << buf;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
347 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
348
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
349 entry.reset(new DcmDictEntry(tag.GetGroup(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
350 tag.GetElement(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
351 evr, name.c_str(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
352 static_cast<int>(minMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
353 static_cast<int>(maxMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
354 NULL /* version */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
355 OFTrue /* doCopyString */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
356 NULL /* private creator */));
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
357 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
358 else
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
359 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
360 // "Private Data Elements have an odd Group Number that is not
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
361 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
362 // (FFFF,eeee)."
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
363 if (tag.GetGroup() % 2 == 0 /* even */ ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
364 tag.GetGroup() == 0x0001 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
365 tag.GetGroup() == 0x0003 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
366 tag.GetGroup() == 0x0005 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
367 tag.GetGroup() == 0x0007 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
368 tag.GetGroup() == 0xffff)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
369 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
370 char buf[128];
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
371 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009",
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
372 tag.GetGroup(), tag.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
373 LOG(ERROR) << buf;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
374 throw OrthancException(ErrorCode_ParameterOutOfRange);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
375 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
376
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
377 entry.reset(new DcmDictEntry(tag.GetGroup(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
378 tag.GetElement(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
379 evr, name.c_str(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
380 static_cast<int>(minMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
381 static_cast<int>(maxMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
382 "private" /* version */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
383 OFTrue /* doCopyString */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
384 privateCreator.c_str()));
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
385 }
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
386
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
387 entry->setGroupRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
388 entry->setElementRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
389
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
390 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
391 DictionaryLocker locker;
2116
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
392
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
393 if (locker->findEntry(name.c_str()))
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
394 {
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
395 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\"";
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
396 throw OrthancException(ErrorCode_AlreadyExistingTag);
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
397 }
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
398
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
399 locker->addEntry(entry.release());
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
400 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
401 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
402
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
403
1936
dba0db0a94b4 generalization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
404 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset,
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1927
diff changeset
405 Encoding defaultEncoding)
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
406 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1927
diff changeset
407 Encoding encoding = defaultEncoding;
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
408
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
409 OFString tmp;
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
410 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good())
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
411 {
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
412 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str()));
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
413
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
414 if (characterSet.empty())
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
415 {
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
416 // Empty specific character set tag: Use the default encoding
1087
e07b90fb00eb more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1086
diff changeset
417 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
418 else if (GetDicomEncoding(encoding, characterSet.c_str()))
1087
e07b90fb00eb more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1086
diff changeset
419 {
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
420 // The specific character set is supported by the Orthanc core
1087
e07b90fb00eb more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1086
diff changeset
421 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
422 else
1087
e07b90fb00eb more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1086
diff changeset
423 {
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
424 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
425 << ", fallback to ASCII (remove all special characters)";
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
426 encoding = Encoding_Ascii;
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
427 }
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
428 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
429 else
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
430 {
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
431 // No specific character set tag: Use the default encoding
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
432 }
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
433
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
434 return encoding;
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
435 }
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
436
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
437
2125
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
438 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target,
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
439 DcmItem& dataset,
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
440 unsigned int maxStringLength,
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
441 Encoding defaultEncoding)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 {
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
443 std::set<DicomTag> ignoreTagLength;
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
444
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1927
diff changeset
445 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
446
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 target.Clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 for (unsigned long i = 0; i < dataset.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 DcmElement* element = dataset.getElement(i);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 if (element && element->isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 target.SetValue(element->getTag().getGTag(),
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 element->getTag().getETag(),
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
455 ConvertLeafElement(*element, DicomToJsonFlags_Default,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
456 maxStringLength, encoding, ignoreTagLength));
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
462 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
463 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
464 return DicomTag(tag.getGTag(), tag.getETag());
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
465 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
466
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
467
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 return DicomTag(element.getGTag(), element.getETag());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
474 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element,
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
475 DicomToJsonFlags flags,
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
476 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
477 Encoding encoding,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
478 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 if (!element.isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
482 // This function is only applicable to leaf elements
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
483 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
486 char *c = NULL;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
487 if (element.isaString() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
488 element.getString(c).good())
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
490 if (c == NULL) // This case corresponds to the empty string
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
492 return new DicomValue("", false);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
496 std::string s(c);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
497 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding);
1854
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
498
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
499 if (maxStringLength != 0 &&
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
500 utf8.size() > maxStringLength &&
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
501 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
1854
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
502 {
2129
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
503 return new DicomValue; // Too long, create a NULL value
1854
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
504 }
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
505 else
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
506 {
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
507 return new DicomValue(utf8, false);
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
508 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
512
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
513 if (element.getVR() == EVR_UN)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
514 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
515 // Unknown value representation: Lookup in the dictionary. This
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
516 // is notably the case for private tags registered with the
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
517 // "Dictionary" configuration option.
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
518 DictionaryLocker locker;
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
519
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
520 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(),
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
521 element.getTag().getPrivateCreator());
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
522 if (entry != NULL &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
523 entry->getVR().isaString())
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
524 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
525 Uint8* data = NULL;
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
526
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
527 // At (*), we do not try and convert to UTF-8, as nothing says
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
528 // the encoding of the private tag is the same as that of the
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parents: 2126
diff changeset
529 // remaining of the DICOM dataset. Only go for ASCII strings.
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
530
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
531 if (element.getUint8Array(data) == EC_Normal &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
532 Toolbox::IsAsciiString(data, element.getLength())) // (*)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
533 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
534 if (data == NULL)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
535 {
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parents: 2126
diff changeset
536 return new DicomValue("", false); // Empty string
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
537 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
538 else if (maxStringLength != 0 &&
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
539 element.getLength() > maxStringLength &&
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
540 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
541 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
542 return new DicomValue; // Too long, create a NULL value
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
543 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
544 else
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
545 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
546 std::string s(reinterpret_cast<const char*>(data), element.getLength());
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
547 return new DicomValue(s, false);
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
548 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
549 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
550 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
551 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
552
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
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parents: 2382
diff changeset
553
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 {
3959d33612cc initial commit
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parents:
diff changeset
556 // http://support.dcmtk.org/docs/dcvr_8h-source.html
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parents:
diff changeset
557 switch (element.getVR())
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parents:
diff changeset
558 {
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parents:
diff changeset
559
3959d33612cc initial commit
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parents:
diff changeset
560 /**
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
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parents: 1737
diff changeset
561 * Deal with binary data (including PixelData).
0
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diff changeset
562 **/
306
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diff changeset
563
302
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diff changeset
564 case EVR_OB: // other byte
238134081136 modification of dicom files
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parents: 291
diff changeset
565 case EVR_OF: // other float
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
566 case EVR_OW: // other word
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
567 case EVR_UN: // unknown value representation
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
568 case EVR_ox: // OB or OW depending on context
306
326d5a4a5af3 modification of instances
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diff changeset
569 case EVR_DS: // decimal string
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
570 case EVR_IS: // integer string
326d5a4a5af3 modification of instances
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parents: 305
diff changeset
571 case EVR_AS: // age string
326d5a4a5af3 modification of instances
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parents: 305
diff changeset
572 case EVR_DA: // date string
326d5a4a5af3 modification of instances
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diff changeset
573 case EVR_DT: // date time string
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diff changeset
574 case EVR_TM: // time string
302
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diff changeset
575 case EVR_AE: // application entity title
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parents: 291
diff changeset
576 case EVR_CS: // code string
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parents: 291
diff changeset
577 case EVR_SH: // short string
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parents: 291
diff changeset
578 case EVR_LO: // long string
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parents: 291
diff changeset
579 case EVR_ST: // short text
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parents: 291
diff changeset
580 case EVR_LT: // long text
238134081136 modification of dicom files
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parents: 291
diff changeset
581 case EVR_UT: // unlimited text
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parents: 291
diff changeset
582 case EVR_PN: // person name
238134081136 modification of dicom files
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diff changeset
583 case EVR_UI: // unique identifier
1818
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parents: 1792
diff changeset
584 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
585 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
586 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
587 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull))
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
588 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
589 Uint8* data = NULL;
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
590 if (element.getUint8Array(data) == EC_Normal)
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
591 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
592 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
593 }
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
594 }
0
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diff changeset
595
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parents: 1792
diff changeset
596 return new DicomValue;
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parents: 1792
diff changeset
597 }
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parents: 1792
diff changeset
598
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
599 /**
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a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
600 * Numeric types
1818
1065401501fb ParsedDicomFile::CreateFromJson
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diff changeset
601 **/
0
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diff changeset
602
302
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diff changeset
603 case EVR_SL: // signed long
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parents: 291
diff changeset
604 {
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am@osimis.io
parents: 2528
diff changeset
605 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element);
302
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diff changeset
606 }
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parents: 291
diff changeset
607
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parents: 291
diff changeset
608 case EVR_SS: // signed short
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parents: 291
diff changeset
609 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
610 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element);
302
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diff changeset
611 }
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parents: 291
diff changeset
612
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
613 case EVR_UL: // unsigned long
238134081136 modification of dicom files
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parents: 291
diff changeset
614 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
615 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element);
302
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diff changeset
616 }
238134081136 modification of dicom files
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parents: 291
diff changeset
617
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parents: 291
diff changeset
618 case EVR_US: // unsigned short
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parents: 291
diff changeset
619 {
2554
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am@osimis.io
parents: 2528
diff changeset
620 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element);
302
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diff changeset
621 }
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parents: 291
diff changeset
622
238134081136 modification of dicom files
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parents: 291
diff changeset
623 case EVR_FL: // float single-precision
238134081136 modification of dicom files
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parents: 291
diff changeset
624 {
2554
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am@osimis.io
parents: 2528
diff changeset
625 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element);
302
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diff changeset
626 }
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parents: 291
diff changeset
627
238134081136 modification of dicom files
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parents: 291
diff changeset
628 case EVR_FD: // float double-precision
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
629 {
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ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
630 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element);
1131
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
631 }
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
632
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
633
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
634 /**
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parents: 1093
diff changeset
635 * Attribute tag.
ac6bd50a8c83 fix issue 16
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diff changeset
636 **/
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
637
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parents: 1093
diff changeset
638 case EVR_AT:
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
639 {
1147
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parents: 1131
diff changeset
640 DcmTagKey tag;
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parents: 1131
diff changeset
641 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good())
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
642 {
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
643 DicomTag t(tag.getGroup(), tag.getElement());
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parents: 1736
diff changeset
644 return new DicomValue(t.Format(), false);
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
645 }
1131
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
646 else
1147
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
647 {
1737
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parents: 1736
diff changeset
648 return new DicomValue;
1147
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diff changeset
649 }
302
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diff changeset
650 }
0
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parents:
diff changeset
651
3959d33612cc initial commit
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parents:
diff changeset
652
3959d33612cc initial commit
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diff changeset
653 /**
302
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diff changeset
654 * Sequence types, should never occur at this point because of
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parents: 291
diff changeset
655 * "element.isLeaf()".
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diff changeset
656 **/
0
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diff changeset
657
302
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diff changeset
658 case EVR_SQ: // sequence of items
1737
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parents: 1736
diff changeset
659 return new DicomValue;
0
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parents:
diff changeset
660
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diff changeset
661
302
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diff changeset
662 /**
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diff changeset
663 * Internal to DCMTK.
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diff changeset
664 **/
0
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diff changeset
665
302
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diff changeset
666 case EVR_xs: // SS or US depending on context
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
667 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
668 case EVR_na: // na="not applicable", for data which has no VR
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
669 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
670 case EVR_item: // used internally for items
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
671 case EVR_metainfo: // used internally for meta info datasets
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
672 case EVR_dataset: // used internally for datasets
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
673 case EVR_fileFormat: // used internally for DICOM files
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
674 case EVR_dicomDir: // used internally for DICOMDIR objects
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
675 case EVR_dirRecord: // used internally for DICOMDIR records
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
676 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
677 case EVR_pixelItem: // used internally for pixel items in a compressed image
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
678 case EVR_PixelData: // used internally for uncompressed pixeld data
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
679 case EVR_OverlayData: // used internally for overlay data
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
680 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
681
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
682
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
683 /**
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
684 * Default case.
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
685 **/
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
686
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
687 default:
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
688 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
689 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
690 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
691 catch (boost::bad_lexical_cast&)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
692 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
693 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
694 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
695 catch (std::bad_cast&)
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
696 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
697 return new DicomValue;
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
698 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
699 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
702 static Json::Value& PrepareNode(Json::Value& parent,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
703 DcmElement& element,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
704 DicomToJsonFormat format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705 {
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
706 assert(parent.type() == Json::objectValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
707
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
708 DicomTag tag(FromDcmtkBridge::GetTag(element));
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
709 const std::string formattedTag = tag.Format();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
710
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
711 if (format == DicomToJsonFormat_Short)
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
712 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
713 parent[formattedTag] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
714 return parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
715 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
716
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
717 // This code gives access to the name of the private tags
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
718 std::string tagName = FromDcmtkBridge::GetTagName(element);
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
719
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
720 switch (format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
721 {
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
722 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
723 parent[tagName] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
724 return parent[tagName];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
725
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
726 case DicomToJsonFormat_Full:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
727 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
728 parent[formattedTag] = Json::objectValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
729 Json::Value& node = parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
730
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
731 if (element.isLeaf())
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
732 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
733 node["Name"] = tagName;
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
734
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
735 if (element.getTag().getPrivateCreator() != NULL)
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
736 {
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
737 node["PrivateCreator"] = element.getTag().getPrivateCreator();
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
738 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
739
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
740 return node;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
741 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
742 else
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
743 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
744 node["Name"] = tagName;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
745 node["Type"] = "Sequence";
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
746 node["Value"] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
747 return node["Value"];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
748 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
749 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
750
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
751 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
752 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
753 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
754 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
755
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
756
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
757 static void LeafValueToJson(Json::Value& target,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
758 const DicomValue& value,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
759 DicomToJsonFormat format,
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
760 DicomToJsonFlags flags,
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
761 unsigned int maxStringLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
762 {
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
763 Json::Value* targetValue = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
764 Json::Value* targetType = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
765
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
766 switch (format)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
767 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
768 case DicomToJsonFormat_Short:
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
769 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
770 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
771 assert(target.type() == Json::nullValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
772 targetValue = &target;
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
773 break;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
774 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
775
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
776 case DicomToJsonFormat_Full:
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
777 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
778 assert(target.type() == Json::objectValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
779 target["Value"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
780 target["Type"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
781 targetType = &target["Type"];
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
782 targetValue = &target["Value"];
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
783 break;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784 }
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
785
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
786 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
787 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
788 }
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
789
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
790 assert(targetValue != NULL);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
791 assert(targetValue->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
792 assert(targetType == NULL || targetType->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
793
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
794 if (value.IsNull())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
795 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
796 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
797 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
798 *targetType = "Null";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
799 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
800 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
801 else if (value.IsBinary())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
802 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
803 if (flags & DicomToJsonFlags_ConvertBinaryToAscii)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
804 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
805 *targetValue = Toolbox::ConvertToAscii(value.GetContent());
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
806 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
807 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
808 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
809 std::string s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
810 value.FormatDataUriScheme(s);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
811 *targetValue = s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
812 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
813
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
814 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
815 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
816 *targetType = "Binary";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
817 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
818 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
819 else if (maxStringLength == 0 ||
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
820 value.GetContent().size() <= maxStringLength)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
821 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
822 *targetValue = value.GetContent();
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
823
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
824 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
825 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
826 *targetType = "String";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
827 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
828 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
829 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
830 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
831 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
832 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
833 *targetType = "TooLong";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
834 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
835 }
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
836 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
837
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
838
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
839 void FromDcmtkBridge::ElementToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
840 DcmElement& element,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
841 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
842 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
843 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
844 Encoding encoding,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
845 const std::set<DicomTag>& ignoreTagLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
846 {
1691
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
847 if (parent.type() == Json::nullValue)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
848 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
849 parent = Json::objectValue;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
850 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
851
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
852 assert(parent.type() == Json::objectValue);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
853 Json::Value& target = PrepareNode(parent, element, format);
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
854
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
855 if (element.isLeaf())
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
856 {
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
857 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
858 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
859 (element, flags, 0, encoding, ignoreTagLength));
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
860
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
861 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
862 {
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
863 LeafValueToJson(target, *v, format, flags, maxStringLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
864 }
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
865 else
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
866 {
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
867 LeafValueToJson(target, *v, format, flags, 0);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
868 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
869 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
870 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
872 assert(target.type() == Json::nullValue);
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
873 target = Json::arrayValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
874
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
875 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
877 // etc. are not." The following dynamic_cast is thus OK.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
878 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
879
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
880 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
882 DcmItem* child = sequence.getItem(i);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
883 Json::Value& v = target.append(Json::objectValue);
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
884 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, ignoreTagLength);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
885 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
886 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
887 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
888
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
889
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
890 void FromDcmtkBridge::DatasetToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
891 DcmItem& item,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
892 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
893 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
894 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
895 Encoding encoding,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
896 const std::set<DicomTag>& ignoreTagLength)
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
897 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
898 assert(parent.type() == Json::objectValue);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
899
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
900 for (unsigned long i = 0; i < item.card(); i++)
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
901 {
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
902 DcmElement* element = item.getElement(i);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
903 if (element == NULL)
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
904 {
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
905 throw OrthancException(ErrorCode_InternalError);
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
906 }
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
907
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
908 DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
909
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
910 /*element->getTag().isPrivate()*/
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
911 if (tag.IsPrivate() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
912 !(flags & DicomToJsonFlags_IncludePrivateTags))
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
913 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
914 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
915 }
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
916
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
917 if (!(flags & DicomToJsonFlags_IncludeUnknownTags))
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
918 {
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
919 DictionaryLocker locker;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
920 if (locker->findEntry(element->getTag(), NULL) == NULL)
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
921 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
922 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
923 }
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
924 }
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
925
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
926 DcmEVR evr = element->getTag().getEVR();
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
927 if (evr == EVR_OB ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
928 evr == EVR_OF ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
929 evr == EVR_OW ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
930 evr == EVR_UN ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
931 evr == EVR_ox)
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
932 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
933 // This is a binary tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
934 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
935 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary)))
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
936 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
937 continue;
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
938 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
939 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
940
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
941 FromDcmtkBridge::ElementToJson(parent, *element, format, flags,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
942 maxStringLength, encoding, ignoreTagLength);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
943 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
944 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
945
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
946
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
947 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
948 DcmDataset& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
949 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
950 DicomToJsonFlags flags,
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
951 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
952 Encoding defaultEncoding,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
953 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
954 {
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
955 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
956
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
957 target = Json::objectValue;
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
958 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, ignoreTagLength);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
959 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
960
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
961
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
962 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
963 DcmMetaInfo& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
964 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
965 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
966 unsigned int maxStringLength)
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
967 {
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
968 std::set<DicomTag> ignoreTagLength;
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
969 target = Json::objectValue;
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
970 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, ignoreTagLength);
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
971 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
972
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
973
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
974
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
975 static std::string GetTagNameInternal(DcmTag& tag)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
976 {
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
977 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
978 // Some patches for important tags because of different DICOM
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
979 // dictionaries between DCMTK versions
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
980 DicomTag tmp(tag.getGroup(), tag.getElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
981 std::string n = tmp.GetMainTagsName();
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
982 if (n.size() != 0)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
983 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
984 return n;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
985 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
986 // End of patches
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
987 }
106
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
988
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
989 #if 0
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
990 // This version explicitly calls the dictionary
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
991 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
992 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
993
306
326d5a4a5af3 modification of instances
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parents: 305
diff changeset
994 std::string s(DcmTag_ERROR_TagName);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
995 if (entry != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
996 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
997 s = std::string(entry->getTagName());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
998 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
999
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1000 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1001 return s;
305
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parents: 304
diff changeset
1002 #else
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parents: 304
diff changeset
1003 const char* name = tag.getTagName();
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parents: 304
diff changeset
1004 if (name == NULL)
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parents: 304
diff changeset
1005 {
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1006 return DcmTag_ERROR_TagName;
305
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1007 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1008 else
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parents: 304
diff changeset
1009 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1010 return std::string(name);
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1011 }
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1012 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1013 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1014
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1015
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1016 std::string FromDcmtkBridge::GetTagName(const DicomTag& t,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1017 const std::string& privateCreator)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1018 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1019 DcmTag tag(t.GetGroup(), t.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1020
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1021 if (!privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1022 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1023 tag.setPrivateCreator(privateCreator.c_str());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1024 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1025
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1026 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1027 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1028
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1029
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1030 std::string FromDcmtkBridge::GetTagName(const DcmElement& element)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1031 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1032 // Copy the tag to ensure const-correctness of DcmElement. Note
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1033 // that the private creator information is also copied.
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1034 DcmTag tag(element.getTag());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1035
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1036 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1037 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1038
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1039
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1040
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1041 DicomTag FromDcmtkBridge::ParseTag(const char* name)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1042 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1043 DicomTag parsed(0, 0);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1044 if (DicomTag::ParseHexadecimal(parsed, name))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1045 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1046 return parsed;
1861
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1047 }
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1048
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1049 #if 0
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1050 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1051 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1052
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1053 if (entry == NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1054 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1055 dcmDataDict.unlock();
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1056 throw OrthancException(ErrorCode_UnknownDicomTag);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1057 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1058 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1059 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1060 DcmTagKey key = entry->getKey();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1061 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1062 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1063 return tag;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1064 }
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1065 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1066 DcmTag tag;
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1067 if (DcmTag::findTagFromName(name, tag).good())
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1068 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1069 return DicomTag(tag.getGTag(), tag.getETag());
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1070 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1071 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1072 {
2470
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1073 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\"";
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1074 throw OrthancException(ErrorCode_UnknownDicomTag);
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1075 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1076 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1077 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1078
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1079
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1080 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag)
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1081 {
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1082 DcmTag tmp(tag.GetGroup(), tag.GetElement());
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1083 return tmp.isUnknownVR();
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1084 }
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1085
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1086
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1087 void FromDcmtkBridge::ToJson(Json::Value& result,
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1088 const DicomMap& values,
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1089 bool simplify)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1090 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1091 if (result.type() != Json::objectValue)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1092 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1093 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1094 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1095
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1096 result.clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1097
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1098 for (DicomMap::Map::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
1099 it = values.map_.begin(); it != values.map_.end(); ++it)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1100 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1101 // TODO Inject PrivateCreator if some is available in the DicomMap?
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1102 const std::string tagName = GetTagName(it->first, "");
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1103
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1104 if (simplify)
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1105 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1106 if (it->second->IsNull())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1107 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1108 result[tagName] = Json::nullValue;
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1109 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1110 else
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1111 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1112 // TODO IsBinary
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1113 result[tagName] = it->second->GetContent();
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1114 }
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1115 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1116 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1117 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1118 Json::Value value = Json::objectValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1119
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1120 value["Name"] = tagName;
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1121
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1122 if (it->second->IsNull())
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1123 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1124 value["Type"] = "Null";
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1125 value["Value"] = Json::nullValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1126 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1127 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1128 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1129 // TODO IsBinary
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1130 value["Type"] = "String";
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1131 value["Value"] = it->second->GetContent();
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1132 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1133
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1134 result[it->first.Format()] = value;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1135 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1136 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1137 }
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1138
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1139
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1140 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level)
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1141 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1142 char uid[100];
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1143
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1144 switch (level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1145 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1146 case ResourceType_Patient:
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1147 // The "PatientID" field is of type LO (Long String), 64
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1148 // Bytes Maximum. An UUID is of length 36, thus it can be used
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1149 // as a random PatientID.
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
1150 return Toolbox::GenerateUuid();
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1151
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1152 case ResourceType_Instance:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1153 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1154
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1155 case ResourceType_Series:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1156 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1157
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1158 case ResourceType_Study:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1159 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1160
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1161 default:
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1162 throw OrthancException(ErrorCode_ParameterOutOfRange);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1163 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1164 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1165
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1166 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1167 DcmDataset& dataSet)
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1168 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1169 // Determine the transfer syntax which shall be used to write the
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1170 // information to the file. We always switch to the Little Endian
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1171 // syntax, with explicit length.
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1172
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1173 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1174
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1175
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1176 /**
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1177 * Note that up to Orthanc 0.7.1 (inclusive), the
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1178 * "EXS_LittleEndianExplicit" was always used to save the DICOM
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1179 * dataset into memory. We now keep the original transfer syntax
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1180 * (if available).
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1181 **/
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1182 E_TransferSyntax xfer = dataSet.getOriginalXfer();
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1183 if (xfer == EXS_Unknown)
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1184 {
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1185 // No information about the original transfer syntax: This is
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1186 // most probably a DICOM dataset that was read from memory.
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1187 xfer = EXS_LittleEndianExplicit;
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1188 }
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1189
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1190 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1191
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1192 // Create the meta-header information
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1193 DcmFileFormat ff(&dataSet);
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1194 ff.validateMetaInfo(xfer);
1316
1c8dfedefefe Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1307
diff changeset
1195 ff.removeInvalidGroups();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1196
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1197 // Create a memory buffer with the proper size
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1198 {
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1199 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*)
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1200 buffer.resize(estimatedSize);
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1201 }
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1202
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1203 DcmOutputBufferStream ob(&buffer[0], buffer.size());
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1204
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1205 // Fill the memory buffer with the meta-header and the dataset
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1206 ff.transferInit();
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1207 OFCondition c = ff.write(ob, xfer, encodingType, NULL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1208 /*opt_groupLength*/ EGL_recalcGL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1209 /*opt_paddingType*/ EPD_withoutPadding);
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1210 ff.transferEnd();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1211
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1212 if (c.good())
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1213 {
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1214 // The DICOM file is successfully written, truncate the target
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1215 // buffer if its size was overestimated by (*)
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1216 ob.flush();
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1217
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1218 size_t effectiveSize = static_cast<size_t>(ob.tell());
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1219 if (effectiveSize < buffer.size())
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1220 {
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1221 buffer.resize(effectiveSize);
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1222 }
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1223
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1224 return true;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1225 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1226 else
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1227 {
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1228 // Error
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1229 buffer.clear();
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1230 return false;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1231 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1232 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1233
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1234
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1235 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag)
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1236 {
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1237 DcmTag t(tag.GetGroup(), tag.GetElement());
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1238 return Convert(t.getEVR());
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1239 }
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1240
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1241 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr)
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1242 {
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1243 switch (vr)
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1244 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1245 case EVR_AE:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1246 return ValueRepresentation_ApplicationEntity;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1247
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1248 case EVR_AS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1249 return ValueRepresentation_AgeString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1250
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1251 case EVR_AT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1252 return ValueRepresentation_AttributeTag;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1253
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1254 case EVR_CS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1255 return ValueRepresentation_CodeString;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1256
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1257 case EVR_DA:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1258 return ValueRepresentation_Date;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1259
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1260 case EVR_DS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1261 return ValueRepresentation_DecimalString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1262
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1263 case EVR_DT:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1264 return ValueRepresentation_DateTime;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1265
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1266 case EVR_FL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1267 return ValueRepresentation_FloatingPointSingle;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1268
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1269 case EVR_FD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1270 return ValueRepresentation_FloatingPointDouble;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1271
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1272 case EVR_IS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1273 return ValueRepresentation_IntegerString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1274
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1275 case EVR_LO:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1276 return ValueRepresentation_LongString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1277
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1278 case EVR_LT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1279 return ValueRepresentation_LongText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1280
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1281 case EVR_OB:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1282 return ValueRepresentation_OtherByte;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1283
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1284 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1285 /*case EVR_OD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1286 return ValueRepresentation_OtherDouble;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1287
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1288 case EVR_OF:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1289 return ValueRepresentation_OtherFloat;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1290
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1291 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1292 /*case EVR_OL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1293 return ValueRepresentation_OtherLong;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1294
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1295 case EVR_OW:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1296 return ValueRepresentation_OtherWord;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1297
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1298 case EVR_PN:
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1299 return ValueRepresentation_PersonName;
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1300
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1301 case EVR_SH:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1302 return ValueRepresentation_ShortString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1303
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1304 case EVR_SL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1305 return ValueRepresentation_SignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1306
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1307 case EVR_SQ:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1308 return ValueRepresentation_Sequence;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1309
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1310 case EVR_SS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1311 return ValueRepresentation_SignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1312
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1313 case EVR_ST:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1314 return ValueRepresentation_ShortText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1315
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1316 case EVR_TM:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1317 return ValueRepresentation_Time;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1318
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1319 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1320 /*case EVR_UC:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1321 return ValueRepresentation_UnlimitedCharacters;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1322
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1323 case EVR_UI:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1324 return ValueRepresentation_UniqueIdentifier;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1325
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1326 case EVR_UL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1327 return ValueRepresentation_UnsignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1328
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1329 case EVR_UN:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1330 return ValueRepresentation_Unknown;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1331
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1332 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1333 /*case EVR_UR:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1334 return ValueRepresentation_UniversalResource;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1335
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1336 case EVR_US:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1337 return ValueRepresentation_UnsignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1338
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1339 case EVR_UT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1340 return ValueRepresentation_UnlimitedText;
1792
b769623c806c safety check
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1765
diff changeset
1341
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1342 default:
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1343 return ValueRepresentation_NotSupported;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1344 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1345 }
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1346
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1347
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1348 static bool IsBinaryTag(const DcmTag& key)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1349 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1350 return (key.isUnknownVR() ||
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1351 key.getEVR() == EVR_OB ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1352 key.getEVR() == EVR_OF ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1353 key.getEVR() == EVR_OW ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1354 key.getEVR() == EVR_UN ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1355 key.getEVR() == EVR_ox);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1356 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1357
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1358
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1359 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1360 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1361 DcmTag key(tag.GetGroup(), tag.GetElement());
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1362
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1363 if (tag.IsPrivate() ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1364 IsBinaryTag(key))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1365 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1366 return new DcmOtherByteOtherWord(key);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1367 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1368
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1369 switch (key.getEVR())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1370 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1371 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1372
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1373 /**
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1374 * Binary types, handled above
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1375 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1376
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1377 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1378 case EVR_OF: // other float
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1379 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1380 case EVR_UN: // unknown value representation
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1381 case EVR_ox: // OB or OW depending on context
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1382 throw OrthancException(ErrorCode_InternalError);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1383
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1384
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1385 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1386 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1387 * http://support.dcmtk.org/docs/classDcmByteString.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1388 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1389
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1390 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1391 return new DcmAgeString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1392
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1393 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1394 return new DcmApplicationEntity(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1395
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1396 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1397 return new DcmCodeString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1398
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1399 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1400 return new DcmDate(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1401
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1402 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1403 return new DcmDateTime(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1404
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1405 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1406 return new DcmDecimalString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1407
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1408 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1409 return new DcmIntegerString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1410
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1411 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1412 return new DcmTime(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1413
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1414 case EVR_UI: // unique identifier
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1415 return new DcmUniqueIdentifier(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1416
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1417 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1418 return new DcmShortText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1419
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1420 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1421 return new DcmLongString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1422
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1423 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1424 return new DcmLongText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1425
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1426 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1427 return new DcmUnlimitedText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1428
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1429 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1430 return new DcmShortString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1431
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1432 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1433 return new DcmPersonName(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1434
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1435
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1436 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1437 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1438 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1439
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1440 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1441 return new DcmSignedLong(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1442
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1443 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1444 return new DcmSignedShort(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1445
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1446 case EVR_UL: // unsigned long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1447 return new DcmUnsignedLong(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1448
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1449 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1450 return new DcmUnsignedShort(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1451
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1452 case EVR_FL: // float single-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1453 return new DcmFloatingPointSingle(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1454
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1455 case EVR_FD: // float double-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1456 return new DcmFloatingPointDouble(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1457
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1458
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1459 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1460 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1461 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1462
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1463 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1464 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1465
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1466
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1467 /**
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1468 * TODO
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1469 **/
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1470
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1471 case EVR_AT: // attribute tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1472 throw OrthancException(ErrorCode_NotImplemented);
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1473
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1474
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1475 /**
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1476 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1477 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1478
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1479 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1480 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1481 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1482 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1483 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1484 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1485 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1486 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1487 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1488 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1489 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1490 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1491 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1492 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1493 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1494 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1495 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1496 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1497 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1498
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1499 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1500 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1501
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1502
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1503
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1504 void FromDcmtkBridge::FillElementWithString(DcmElement& element,
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1505 const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1506 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1507 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1508 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1509 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1510 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1511 const std::string* decoded = &utf8Value;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1512
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1513 if (decodeDataUriScheme &&
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1514 boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1515 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1516 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1517 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1518 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1519 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1520 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1521
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1522 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1523 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1524 else if (dicomEncoding != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1525 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1526 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1527 decoded = &binary;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1528 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1529
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1530 DcmTag key(tag.GetGroup(), tag.GetElement());
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1531
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1532 if (tag.IsPrivate() ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1533 IsBinaryTag(key))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1534 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1535 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1536 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1537 return;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1538 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1539 else
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1540 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1541 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1542 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1543 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1544
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1545 bool ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1546
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1547 try
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1548 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1549 switch (key.getEVR())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1550 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1551 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1552
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1553 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1554 * TODO.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1555 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1556
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1557 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1558 case EVR_OF: // other float
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1559 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1560 case EVR_AT: // attribute tag
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1561 throw OrthancException(ErrorCode_NotImplemented);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1562
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1563 case EVR_UN: // unknown value representation
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1564 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1565
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1566
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1567 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1568 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1569 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1570
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1571 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1572 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1573 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1574 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1575 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1576 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1577 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1578 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1579 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1580 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1581 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1582 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1583 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1584 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1585 case EVR_UI: // unique identifier
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1586 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1587 ok = element.putString(decoded->c_str()).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1588 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1589 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1590
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1591
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1592 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1593 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1594 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1595
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1596 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1597 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1598 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1599 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1600 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1601
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1602 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1603 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1604 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1605 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1606 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1607
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1608 case EVR_UL: // unsigned long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1609 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1610 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1611 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1612 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1613
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1614 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1615 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1616 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1617 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1618 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1619
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1620 case EVR_FL: // float single-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1621 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1622 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1623 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1624 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1625
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1626 case EVR_FD: // float double-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1627 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1628 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1629 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1630 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1631
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1632
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1633 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1634 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1635 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1636
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1637 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1638 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1639 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1640 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1641 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1642
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1643
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1644 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1645 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1646 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1647
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1648 case EVR_ox: // OB or OW depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1649 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1650 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1651 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1652 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1653 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1654 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1655 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1656 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1657 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1658 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1659 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1660 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1661 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1662 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1663 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1664 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1665 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1666 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1667 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1668 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1669 catch (boost::bad_lexical_cast&)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1670 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1671 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1672 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1673
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1674 if (!ok)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1675 {
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1676 LOG(ERROR) << "While creating a DICOM instance, tag (" << tag.Format()
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1677 << ") has out-of-range value: \"" << *decoded << "\"";
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1678 throw OrthancException(ErrorCode_BadFileFormat);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1679 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1680 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1681
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1682
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1683 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1684 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1685 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1686 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1687 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1688 std::auto_ptr<DcmElement> element;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1689
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1690 switch (value.type())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1691 {
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1692 case Json::stringValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1693 element.reset(CreateElementForTag(tag));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1694 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1695 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1696
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1697 case Json::nullValue:
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1698 element.reset(CreateElementForTag(tag));
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1699 FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding);
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1700 break;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1701
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1702 case Json::arrayValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1703 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1704 DcmTag key(tag.GetGroup(), tag.GetElement());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1705 if (key.getEVR() != EVR_SQ)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1706 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1707 throw OrthancException(ErrorCode_BadParameterType);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1708 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1709
2287
9f3414878c02 Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2275
diff changeset
1710 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1711 element.reset(sequence);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1712
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1713 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1714 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1715 std::auto_ptr<DcmItem> item(new DcmItem);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1716
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1717 Json::Value::Members members = value[i].getMemberNames();
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1718 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1719 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1720 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding));
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1721 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1722
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1723 sequence->append(item.release());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1724 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1725
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1726 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1727 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1728
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1729 default:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1730 throw OrthancException(ErrorCode_BadParameterType);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1731 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1732
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1733 return element.release();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1734 }
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1735
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1736
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1737 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1738 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1739 DcmElement *element = NULL;
1927
b60f27664b8f simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1740 if (!dataset.findAndGetElement(DCM_PixelData, element).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1741 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1742 throw OrthancException(ErrorCode_BadFileFormat);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1743 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1744
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1745 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1746 DcmPixelSequence* pixelSequence = NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1747 if (!pixelData.getEncapsulatedRepresentation
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1748 (dataset.getOriginalXfer(), NULL, pixelSequence).good())
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1749 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1750 return NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1751 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1752 else
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1753 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1754 return pixelSequence;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1755 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1756 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1757
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1758
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1759 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1760 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1761 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1762 if (json.type() != Json::objectValue)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1763 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1764 throw OrthancException(ErrorCode_BadParameterType);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1765 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1766
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1767 Encoding encoding = defaultEncoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1768
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1769 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1770
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1771 // Look for SpecificCharacterSet (0008,0005) in the JSON file
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1772 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1773 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1774 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1775 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1776 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1777 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1778 if (value.type() != Json::stringValue ||
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1779 (value.asString().length() != 0 &&
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1780 !GetDicomEncoding(encoding, value.asCString())))
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1781 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1782 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1783 throw OrthancException(ErrorCode_BadRequest);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1784 }
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1785
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1786 if (value.asString().length() == 0)
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1787 {
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1788 return defaultEncoding;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1789 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1790 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1791 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1792
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1793 return encoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1794 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1795
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1796
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1797 static void SetString(DcmDataset& target,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1798 const DcmTag& tag,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1799 const std::string& value)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1800 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1801 if (!target.putAndInsertString(tag, value.c_str()).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1802 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1803 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1804 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1805 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1806
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1807
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1808 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1809 bool generateIdentifiers,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1810 bool decodeDataUriScheme,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1811 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1812 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1813 std::auto_ptr<DcmDataset> result(new DcmDataset);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1814 Encoding encoding = ExtractEncoding(json, defaultEncoding);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1815
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1816 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1817
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1818 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1819
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1820 bool hasPatientId = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1821 bool hasStudyInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1822 bool hasSeriesInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1823 bool hasSopInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1824
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1825 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1826 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1827 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1828 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1829
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1830 if (tag == DICOM_TAG_PATIENT_ID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1831 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1832 hasPatientId = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1833 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1834 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1835 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1836 hasStudyInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1837 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1838 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1839 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1840 hasSeriesInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1841 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1842 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1843 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1844 hasSopInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1845 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1846
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1847 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1848 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1849 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1850 const DcmTagKey& tag = element->getTag();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1851
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1852 result->findAndDeleteElement(tag);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1853
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1854 DcmElement* tmp = element.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1855 if (!result->insert(tmp, false, false).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1856 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1857 delete tmp;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1858 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1859 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1860 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1861 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1862
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1863 if (!hasPatientId &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1864 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1865 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1866 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1867 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1868
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1869 if (!hasStudyInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1870 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1871 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1872 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1873 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1874
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1875 if (!hasSeriesInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1876 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1877 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1878 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1879 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1880
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1881 if (!hasSopInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1882 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1883 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1884 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1885 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1886
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1887 return result.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1888 }
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1889
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1890
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1891 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer,
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1892 size_t size)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1893 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1894 DcmInputBufferStream is;
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1895 if (size > 0)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1896 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1897 is.setBuffer(buffer, size);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1898 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1899 is.setEos();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1900
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1901 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1902
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1903 result->transferInit();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1904 if (!result->read(is).good())
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1905 {
2431
14537babc1e6 print error if unable to parse DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2409
diff changeset
1906 LOG(ERROR) << "Cannot parse an invalid DICOM file (size: " << size << " bytes)";
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1907 throw OrthancException(ErrorCode_BadFileFormat);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1908 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1909
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1910 result->loadAllDataIntoMemory();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1911 result->transferEnd();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1912
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1913 return result.release();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1914 }
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1915
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1916
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1917 void FromDcmtkBridge::FromJson(DicomMap& target,
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1918 const Json::Value& source)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1919 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1920 if (source.type() != Json::objectValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1921 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1922 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1923 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1924
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1925 target.Clear();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1926
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1927 Json::Value::Members members = source.getMemberNames();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1928
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1929 for (size_t i = 0; i < members.size(); i++)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1930 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1931 const Json::Value& value = source[members[i]];
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1932
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1933 if (value.type() != Json::stringValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1934 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1935 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1936 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1937
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1938 target.SetValue(ParseTag(members[i]), value.asString(), false);
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1939 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1940 }
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1941
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1942
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1943 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset,
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1944 Encoding source,
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1945 Encoding target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1946 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1947 // Recursive exploration of a dataset to change the encoding of
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1948 // each string-like element
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1949
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1950 if (source == target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1951 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1952 return;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1953 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1954
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1955 for (unsigned long i = 0; i < dataset.card(); i++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1956 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1957 DcmElement* element = dataset.getElement(i);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1958 if (element)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1959 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1960 if (element->isLeaf())
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1961 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1962 char *c = NULL;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1963 if (element->isaString() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1964 element->getString(c).good() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1965 c != NULL)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1966 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1967 std::string a = Toolbox::ConvertToUtf8(c, source);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1968 std::string b = Toolbox::ConvertFromUtf8(a, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1969 element->putString(b.c_str());
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1970 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1971 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1972 else
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1973 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1974 // "All subclasses of DcmElement except for DcmSequenceOfItems
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1975 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1976 // etc. are not." The following dynamic_cast is thus OK.
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1977 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1978
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1979 for (unsigned long j = 0; j < sequence.card(); j++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1980 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1981 ChangeStringEncoding(*sequence.getItem(j), source, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1982 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1983 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1984 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1985 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1986 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1987
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1988
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1989 bool FromDcmtkBridge::LookupTransferSyntax(std::string& result,
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1990 DcmFileFormat& dicom)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1991 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1992 const char* value = NULL;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1993
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1994 if (dicom.getMetaInfo() != NULL &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1995 dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1996 value != NULL)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1997 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1998 result.assign(value);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1999 return true;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2000 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2001 else
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2002 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2003 return false;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2004 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2005 }
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2006
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2007
2232
3dd44baebc36 macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2218
diff changeset
2008 #if ORTHANC_ENABLE_LUA == 1
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2009 void FromDcmtkBridge::ExecuteToDicom(DicomMap& target,
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2010 LuaFunctionCall& call)
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2011 {
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2012 Json::Value output;
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2013 call.ExecuteToJson(output, true /* keep strings */);
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2014
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2015 target.Clear();
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2016
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2017 if (output.type() == Json::arrayValue &&
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2018 output.size() == 0)
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2019 {
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2020 // This case happens for empty tables
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2021 return;
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2022 }
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2023
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2024 if (output.type() != Json::objectValue)
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2025 {
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2026 LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table";
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2027 throw OrthancException(ErrorCode_LuaBadOutput);
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2028 }
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2029
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2030 Json::Value::Members members = output.getMemberNames();
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2031
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2032 for (size_t i = 0; i < members.size(); i++)
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2033 {
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2034 if (output[members[i]].type() != Json::stringValue)
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2035 {
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2036 LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table mapping names of DICOM tags to strings";
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2037 throw OrthancException(ErrorCode_LuaBadOutput);
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2038 }
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2039
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2040 DicomTag tag(ParseTag(members[i]));
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2041 target.SetValue(tag, output[members[i]].asString(), false);
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2042 }
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2216
diff changeset
2043 }
2232
3dd44baebc36 macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2218
diff changeset
2044 #endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2045
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2046
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2047 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target,
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2048 DcmItem& dataset)
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2049 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2050 ExtractDicomSummary(target, dataset,
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2051 ORTHANC_MAXIMUM_TAG_LENGTH,
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2052 GetDefaultDicomEncoding());
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2053 }
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2054
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2055
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2056 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
2057 DcmDataset& dataset,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
2058 const std::set<DicomTag>& ignoreTagLength)
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2059 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2060 ExtractDicomAsJson(target, dataset,
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2061 DicomToJsonFormat_Full,
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2062 DicomToJsonFlags_Default,
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2063 ORTHANC_MAXIMUM_TAG_LENGTH,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
2064 GetDefaultDicomEncoding(),
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
2065 ignoreTagLength);
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2066 }
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2067
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2068
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2069 void FromDcmtkBridge::InitializeCodecs()
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2070 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2071 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
2528
832217e4e872 old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2522
diff changeset
2072 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK";
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2073 DJLSDecoderRegistration::registerCodecs();
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2074 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2075
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2076 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
2528
832217e4e872 old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2522
diff changeset
2077 LOG(INFO) << "Registering JPEG codecs in DCMTK";
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2078 DJDecoderRegistration::registerCodecs();
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2079 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2080 }
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2081
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2082
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2083 void FromDcmtkBridge::FinalizeCodecs()
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2084 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2085 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2086 // Unregister JPEG-LS codecs
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2087 DJLSDecoderRegistration::cleanup();
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2088 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2089
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2090 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2091 // Unregister JPEG codecs
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2092 DJDecoderRegistration::cleanup();
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2093 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2094 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2095
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2096
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2097
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2098 // Forward declaration
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2099 static void ApplyVisitorToElement(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2100 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2101 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2102 const std::vector<size_t>& parentIndexes,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2103 Encoding encoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2104
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2105 static void ApplyVisitorToDataset(DcmItem& dataset,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2106 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2107 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2108 const std::vector<size_t>& parentIndexes,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2109 Encoding encoding)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2110 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2111 assert(parentTags.size() == parentIndexes.size());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2112
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2113 for (unsigned long i = 0; i < dataset.card(); i++)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2114 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2115 DcmElement* element = dataset.getElement(i);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2116 if (element == NULL)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2117 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2118 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2119 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2120 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2121 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2122 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2123 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2124 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2125 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2126
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2127
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2128 static void ApplyVisitorToLeaf(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2129 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2130 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2131 const std::vector<size_t>& parentIndexes,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2132 const DicomTag& tag,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2133 Encoding encoding)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2134 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2135 // TODO - Merge this function with ConvertLeafElement()
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2136
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2137 assert(element.isLeaf());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2138
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2139 DcmEVR evr = element.getTag().getEVR();
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2140 ValueRepresentation vr = FromDcmtkBridge::Convert(evr);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2141
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2142 char *c = NULL;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2143 if (element.isaString() &&
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2144 element.getString(c).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2145 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2146 std::string utf8;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2147
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2148 if (c != NULL) // This case corresponds to the empty string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2149 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2150 std::string s(c);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2151 utf8 = Toolbox::ConvertToUtf8(s, encoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2152 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2153
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2154 std::string newValue;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2155 ITagVisitor::Action action = visitor.VisitString
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2156 (newValue, parentTags, parentIndexes, tag, vr, utf8);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2157
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2158 switch (action)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2159 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2160 case ITagVisitor::Action_None:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2161 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2162
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2163 case ITagVisitor::Action_Replace:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2164 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2165 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding);
2522
ce2dfba9417c fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2513
diff changeset
2166 if (element.putString(s.c_str()) != EC_Normal)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2167 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2168 LOG(ERROR) << "Cannot replace value of tag: " << tag.Format();
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2169 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2170 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2171
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2172 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2173 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2174
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2175 default:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2176 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2177 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2178
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2179 return; // We're done
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2180 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2181
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2182
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2183 try
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2184 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2185 // http://support.dcmtk.org/docs/dcvr_8h-source.html
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2186 switch (element.getVR())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2187 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2188
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2189 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2190 * Deal with binary data (including PixelData).
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2191 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2192
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2193 case EVR_OB: // other byte
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2194 case EVR_OF: // other float
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2195 case EVR_OW: // other word
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2196 case EVR_UN: // unknown value representation
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2197 case EVR_ox: // OB or OW depending on context
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2198 case EVR_DS: // decimal string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2199 case EVR_IS: // integer string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2200 case EVR_AS: // age string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2201 case EVR_DA: // date string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2202 case EVR_DT: // date time string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2203 case EVR_TM: // time string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2204 case EVR_AE: // application entity title
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2205 case EVR_CS: // code string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2206 case EVR_SH: // short string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2207 case EVR_LO: // long string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2208 case EVR_ST: // short text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2209 case EVR_LT: // long text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2210 case EVR_UT: // unlimited text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2211 case EVR_PN: // person name
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2212 case EVR_UI: // unique identifier
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2213 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2214 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2215 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2216 Uint8* data = NULL;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2217
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2218 if (element.getUint8Array(data) == EC_Normal)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2219 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2220 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2221 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2222 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2223 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2224 visitor.VisitUnknown(parentTags, parentIndexes, tag, vr);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2225 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2226
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2227 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2228 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2229
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2230 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2231 * Numeric types
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2232 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2233
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2234 case EVR_SL: // signed long
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2235 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2236 Sint32 f;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2237 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2238 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2239 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2240 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2241
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2242 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2243 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2244
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2245 case EVR_SS: // signed short
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2246 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2247 Sint16 f;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2248 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2249 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2250 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2251 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2252
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2253 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2254 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2255
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2256 case EVR_UL: // unsigned long
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2257 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2258 Uint32 f;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2259 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2260 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2261 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2262 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2263
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2264 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2265 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2266
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2267 case EVR_US: // unsigned short
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2268 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2269 Uint16 f;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2270 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2271 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2272 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2273 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2274
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2275 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2276 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2277
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2278 case EVR_FL: // float single-precision
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2279 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2280 Float32 f;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2281 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2282 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2283 visitor.VisitDouble(parentTags, parentIndexes, tag, vr, f);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2284 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2285
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2286 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2287 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2288
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2289 case EVR_FD: // float double-precision
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2290 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2291 Float64 f;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2292 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2293 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2294 visitor.VisitDouble(parentTags, parentIndexes, tag, vr, f);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2295 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2296
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2297 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2298 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2299
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2300
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2301 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2302 * Attribute tag.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2303 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2304
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2305 case EVR_AT:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2306 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2307 DcmTagKey tagKey;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2308 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tagKey, 0).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2309 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2310 DicomTag t(tagKey.getGroup(), tagKey.getElement());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2311 visitor.VisitAttribute(parentTags, parentIndexes, tag, vr, t);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2312 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2313
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2314 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2315 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2316
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2317
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2318 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2319 * Sequence types, should never occur at this point because of
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2320 * "element.isLeaf()".
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2321 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2322
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2323 case EVR_SQ: // sequence of items
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2324 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2325
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2326
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2327 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2328 * Internal to DCMTK.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2329 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2330
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2331 case EVR_xs: // SS or US depending on context
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2332 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2333 case EVR_na: // na="not applicable", for data which has no VR
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2334 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2335 case EVR_item: // used internally for items
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2336 case EVR_metainfo: // used internally for meta info datasets
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2337 case EVR_dataset: // used internally for datasets
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2338 case EVR_fileFormat: // used internally for DICOM files
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2339 case EVR_dicomDir: // used internally for DICOMDIR objects
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2340 case EVR_dirRecord: // used internally for DICOMDIR records
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2341 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2342 case EVR_pixelItem: // used internally for pixel items in a compressed image
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2343 case EVR_PixelData: // used internally for uncompressed pixeld data
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2344 case EVR_OverlayData: // used internally for overlay data
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2345 visitor.VisitUnknown(parentTags, parentIndexes, tag, vr);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2346 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2347
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2348
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2349 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2350 * Default case.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2351 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2352
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2353 default:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2354 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2355 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2356 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2357 catch (boost::bad_lexical_cast&)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2358 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2359 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2360 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2361 catch (std::bad_cast&)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2362 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2363 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2364 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2365 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2366
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2367
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2368 static void ApplyVisitorToElement(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2369 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2370 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2371 const std::vector<size_t>& parentIndexes,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2372 Encoding encoding)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2373 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2374 assert(parentTags.size() == parentIndexes.size());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2375
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2376 DicomTag tag(FromDcmtkBridge::Convert(element.getTag()));
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2377
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2378 if (element.isLeaf())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2379 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2380 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2381 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2382 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2383 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2384 // "All subclasses of DcmElement except for DcmSequenceOfItems
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2385 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2386 // etc. are not." The following dynamic_cast is thus OK.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2387 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2388
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2389 std::vector<DicomTag> tags = parentTags;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2390 std::vector<size_t> indexes = parentIndexes;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2391 tags.push_back(tag);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2392 indexes.push_back(0);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2393
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2394 for (unsigned long i = 0; i < sequence.card(); i++)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2395 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2396 indexes.back() = static_cast<size_t>(i);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2397 DcmItem* child = sequence.getItem(i);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2398 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2399 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2400 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2401 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2402
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2403
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2404 void FromDcmtkBridge::Apply(DcmItem& dataset,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2405 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2406 Encoding defaultEncoding)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2407 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2408 std::vector<DicomTag> parentTags;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2409 std::vector<size_t> parentIndexes;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2410 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2411 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2412 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2413 }