Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4981:d0c34145320c
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 25 Apr 2022 17:32:58 +0200 |
parents | 43e613a7756b |
children | df4a90a65af9 |
rev | line source |
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4297 | 1 /** |
786 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
786 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
786 | 12 * |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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16 * Lesser General Public License for more details. |
786 | 17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
786 | 21 **/ |
22 | |
23 | |
24 #pragma once | |
25 | |
790 | 26 #include "ParsedDicomFile.h" |
786 | 27 |
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28 #include <list> |
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29 |
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30 |
786 | 31 namespace Orthanc |
32 { | |
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33 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable |
786 | 34 { |
35 /** | |
36 * Process: | |
37 * (1) Remove private tags | |
38 * (2) Remove tags specified by the user | |
39 * (3) Replace tags | |
40 **/ | |
41 | |
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42 public: |
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DicomModification::SetDicomIdentifierGenerator()
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43 class IDicomIdentifierGenerator : public boost::noncopyable |
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DicomModification::SetDicomIdentifierGenerator()
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44 { |
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DicomModification::SetDicomIdentifierGenerator()
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45 public: |
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DicomModification::SetDicomIdentifierGenerator()
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46 virtual ~IDicomIdentifierGenerator() |
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DicomModification::SetDicomIdentifierGenerator()
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47 { |
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DicomModification::SetDicomIdentifierGenerator()
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48 } |
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DicomModification::SetDicomIdentifierGenerator()
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49 |
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50 virtual bool Apply(std::string& target, |
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51 const std::string& sourceIdentifier, |
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52 ResourceType level, |
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53 const DicomMap& sourceDicom) = 0; |
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54 }; |
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55 |
786 | 56 private: |
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57 class RelationshipsVisitor; |
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58 |
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59 class DicomTagRange |
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60 { |
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61 private: |
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62 uint16_t groupFrom_; |
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63 uint16_t groupTo_; |
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64 uint16_t elementFrom_; |
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65 uint16_t elementTo_; |
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66 |
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67 public: |
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68 DicomTagRange(uint16_t groupFrom, |
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69 uint16_t groupTo, |
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70 uint16_t elementFrom, |
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71 uint16_t elementTo); |
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72 |
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73 uint16_t GetGroupFrom() const |
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74 { |
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75 return groupFrom_; |
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76 } |
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77 |
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78 uint16_t GetGroupTo() const |
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79 { |
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80 return groupTo_; |
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81 } |
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82 |
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83 uint16_t GetElementFrom() const |
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84 { |
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85 return elementFrom_; |
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86 } |
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87 |
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88 uint16_t GetElementTo() const |
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89 { |
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90 return elementTo_; |
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91 } |
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92 |
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93 bool Contains(const DicomTag& tag) const; |
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94 }; |
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95 |
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96 class SequenceReplacement : public boost::noncopyable |
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97 { |
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98 private: |
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99 DicomPath path_; |
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100 Json::Value value_; |
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101 |
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102 public: |
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103 SequenceReplacement(const DicomPath& path, |
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104 const Json::Value& value) : |
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105 path_(path), |
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106 value_(value) |
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107 { |
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108 } |
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109 |
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110 const DicomPath& GetPath() const |
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111 { |
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112 return path_; |
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113 } |
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114 |
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115 const Json::Value& GetValue() const |
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116 { |
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117 return value_; |
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118 } |
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119 }; |
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120 |
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121 typedef std::set<DicomTag> SetOfTags; |
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122 typedef std::map<DicomTag, Json::Value*> Replacements; |
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123 typedef std::list<DicomTagRange> RemovedRanges; |
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124 typedef std::list<DicomPath> ListOfPaths; |
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125 typedef std::list<SequenceReplacement*> SequenceReplacements; |
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126 |
788 | 127 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; |
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128 |
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129 SetOfTags removals_; |
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130 SetOfTags clearings_; |
786 | 131 Replacements replacements_; |
132 bool removePrivateTags_; | |
788 | 133 ResourceType level_; |
786 | 134 UidMap uidMap_; |
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135 SetOfTags privateTagsToKeep_; |
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136 bool allowManualIdentifiers_; |
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137 bool keepStudyInstanceUid_; |
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138 bool keepSeriesInstanceUid_; |
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139 bool keepSopInstanceUid_; |
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140 bool updateReferencedRelationships_; |
2721 | 141 bool isAnonymization_; |
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142 DicomMap currentSource_; |
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143 std::string privateCreator_; |
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144 |
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145 IDicomIdentifierGenerator* identifierGenerator_; |
786 | 146 |
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147 // New in Orthanc 1.9.4 |
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148 SetOfTags uids_; |
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149 RemovedRanges removedRanges_; |
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150 ListOfPaths keepSequences_; // Can *possibly* be a path whose prefix is empty |
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151 ListOfPaths removeSequences_; // Must *never* be a path whose prefix is empty |
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152 SequenceReplacements sequenceReplacements_; // Must *never* be a path whose prefix is empty |
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153 |
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154 std::string MapDicomIdentifier(const std::string& original, |
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155 ResourceType level); |
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156 |
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157 void RegisterMappedDicomIdentifier(const std::string& original, |
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158 const std::string& mapped, |
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159 ResourceType level); |
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160 |
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161 void MapDicomTags(ParsedDicomFile& dicom, |
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162 ResourceType level); |
786 | 163 |
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164 void MarkNotOrthancAnonymization(); |
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165 |
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166 void ClearReplacements(); |
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167 |
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168 void CancelReplacement(const DicomTag& tag); |
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169 |
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170 void ReplaceInternal(const DicomTag& tag, |
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171 const Json::Value& value); |
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172 |
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173 void SetupUidsFromOrthanc_1_9_3(); |
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174 |
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175 void SetupAnonymization2008(); |
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176 |
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177 void SetupAnonymization2017c(); |
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178 |
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179 void SetupAnonymization2021b(); |
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180 |
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181 void UnserializeUidMap(ResourceType level, |
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182 const Json::Value& serialized, |
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183 const char* field); |
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184 |
786 | 185 public: |
186 DicomModification(); | |
187 | |
4200 | 188 explicit DicomModification(const Json::Value& serialized); |
2655 | 189 |
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190 ~DicomModification(); |
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191 |
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192 void Keep(const DicomTag& tag); |
786 | 193 |
194 void Remove(const DicomTag& tag); | |
195 | |
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196 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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197 void Clear(const DicomTag& tag); |
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198 |
786 | 199 bool IsRemoved(const DicomTag& tag) const; |
200 | |
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201 bool IsCleared(const DicomTag& tag) const; |
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202 |
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203 // "safeForAnonymization" tells Orthanc that this replacement does |
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204 // not break the anonymization process it implements (for internal use only) |
786 | 205 void Replace(const DicomTag& tag, |
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206 const Json::Value& value, // Encoded using UTF-8 |
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207 bool safeForAnonymization); |
786 | 208 |
209 bool IsReplaced(const DicomTag& tag) const; | |
210 | |
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211 const Json::Value& GetReplacement(const DicomTag& tag) const; |
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212 |
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213 std::string GetReplacementAsString(const DicomTag& tag) const; |
786 | 214 |
215 void SetRemovePrivateTags(bool removed); | |
216 | |
4297 | 217 bool ArePrivateTagsRemoved() const; |
786 | 218 |
788 | 219 void SetLevel(ResourceType level); |
786 | 220 |
4297 | 221 ResourceType GetLevel() const; |
786 | 222 |
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223 void SetupAnonymization(DicomVersion version); |
786 | 224 |
225 void Apply(ParsedDicomFile& toModify); | |
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226 |
4297 | 227 void SetAllowManualIdentifiers(bool check); |
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228 |
4297 | 229 bool AreAllowManualIdentifiers() const; |
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230 |
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231 void ParseModifyRequest(const Json::Value& request); |
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232 |
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233 // "patientNameOverridden" is set to "true" iff. the PatientName |
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234 // (0010,0010) tag is manually replaced, removed, cleared or kept |
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235 void ParseAnonymizationRequest(bool& patientNameOverridden /* out */, |
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236 const Json::Value& request); |
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237 |
4297 | 238 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator); |
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239 |
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240 void Serialize(Json::Value& value) const; |
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241 |
4297 | 242 void SetPrivateCreator(const std::string& privateCreator); |
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243 |
4297 | 244 const std::string& GetPrivateCreator() const; |
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245 |
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246 // New in Orthanc 1.9.4 |
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247 void Keep(const DicomPath& path); |
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248 |
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249 // New in Orthanc 1.9.4 |
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250 void Remove(const DicomPath& path); |
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251 |
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252 // New in Orthanc 1.9.4 |
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253 void Replace(const DicomPath& path, |
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254 const Json::Value& value, // Encoded using UTF-8 |
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255 bool safeForAnonymization); |
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256 |
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257 bool IsAlteredTag(const DicomTag& tag) const; |
786 | 258 }; |
259 } |