Mercurial > hg > orthanc
annotate Core/DicomParsing/FromDcmtkBridge.h @ 3748:ca36e3f1112c transcoding
transcoding to uncompressed transfer syntaxes
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 13 Mar 2020 16:50:13 +0100 |
| parents | 33c19a6643e1 |
| children | b40dfa6dc8da |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
|
1288
6e7e5ed91c2d
upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
4 * Department, University Hospital of Liege, Belgium |
|
3640
94f4a18a79cc
upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3577
diff
changeset
|
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
36 #include "ITagVisitor.h" |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
37 #include "../DicomFormat/DicomElement.h" |
|
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
38 #include "../DicomFormat/DicomMap.h" |
| 791 | 39 |
| 0 | 40 #include <dcmtk/dcmdata/dcdatset.h> |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
41 #include <dcmtk/dcmdata/dcmetinf.h> |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
42 #include <dcmtk/dcmdata/dcpixseq.h> |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
43 #include <dcmtk/dcmdata/dcfilefo.h> |
| 0 | 44 #include <json/json.h> |
| 45 | |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
46 #if !defined(ORTHANC_ENABLE_LUA) |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
47 # error The macro ORTHANC_ENABLE_LUA must be defined |
|
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
48 #endif |
|
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
49 |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
50 #if ORTHANC_ENABLE_DCMTK != 1 |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
51 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
|
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
52 #endif |
|
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
53 |
| 2126 | 54 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 55 # include <gtest/gtest_prod.h> | |
| 56 #endif | |
| 57 | |
|
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
58 #if ORTHANC_ENABLE_LUA == 1 |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
59 # include "../Lua/LuaFunctionCall.h" |
|
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
60 #endif |
|
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
61 |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
62 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
63 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
64 #endif |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
65 |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
66 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
67 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
68 #endif |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
69 |
| 2126 | 70 |
| 62 | 71 namespace Orthanc |
| 0 | 72 { |
| 2125 | 73 class FromDcmtkBridge : public boost::noncopyable |
| 0 | 74 { |
| 2126 | 75 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 76 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 77 #endif | |
| 78 | |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
79 friend class ParsedDicomFile; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
80 |
| 2125 | 81 private: |
| 82 FromDcmtkBridge(); // Pure static class | |
| 83 | |
| 84 static void ExtractDicomSummary(DicomMap& target, | |
| 85 DcmItem& dataset, | |
| 86 unsigned int maxStringLength, | |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
87 Encoding defaultEncoding, |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
88 const std::set<DicomTag>& ignoreTagLength); |
| 2125 | 89 |
| 2126 | 90 static void DatasetToJson(Json::Value& parent, |
| 91 DcmItem& item, | |
| 92 DicomToJsonFormat format, | |
| 93 DicomToJsonFlags flags, | |
| 94 unsigned int maxStringLength, | |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
95 Encoding encoding, |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
96 bool hasCodeExtensions, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
97 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 98 |
| 99 static void ElementToJson(Json::Value& parent, | |
| 100 DcmElement& element, | |
| 101 DicomToJsonFormat format, | |
| 102 DicomToJsonFlags flags, | |
| 103 unsigned int maxStringLength, | |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
104 Encoding dicomEncoding, |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
105 bool hasCodeExtensions, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
106 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 107 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
108 static void ExtractDicomAsJson(Json::Value& target, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
109 DcmDataset& dataset, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
110 DicomToJsonFormat format, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
111 DicomToJsonFlags flags, |
| 2131 | 112 unsigned int maxStringLength, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
113 Encoding defaultEncoding, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
114 const std::set<DicomTag>& ignoreTagLength); |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
115 |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2151
diff
changeset
|
116 static void ChangeStringEncoding(DcmItem& dataset, |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2151
diff
changeset
|
117 Encoding source, |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
118 bool hasSourceCodeExtensions, |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2151
diff
changeset
|
119 Encoding target); |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2151
diff
changeset
|
120 |
| 0 | 121 public: |
|
2151
8cbb55089a1d
New configuration option: "LoadPrivateDictionary"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2131
diff
changeset
|
122 static void InitializeDictionary(bool loadPrivateDictionary); |
| 1656 | 123 |
|
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
124 static void RegisterDictionaryTag(const DicomTag& tag, |
|
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
125 ValueRepresentation vr, |
|
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
126 const std::string& name, |
|
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
127 unsigned int minMultiplicity, |
|
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
128 unsigned int maxMultiplicity, |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
129 const std::string& privateCreator); |
|
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
130 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
131 static Encoding DetectEncoding(bool& hasCodeExtensions, |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
132 DcmItem& dataset, |
|
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
133 Encoding defaultEncoding); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
134 |
|
3232
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
135 static Encoding DetectEncoding(DcmItem& dataset, |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
136 Encoding defaultEncoding) |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
137 { |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
138 // Compatibility wrapper for Orthanc <= 1.5.4 |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
139 bool hasCodeExtensions; // ignored |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
140 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
141 } |
|
01a5b2530b68
thin compatibility wrapper for FromDcmtkBridge::DetectEncoding()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
142 |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
143 static DicomTag Convert(const DcmTag& tag); |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
144 |
| 0 | 145 static DicomTag GetTag(const DcmElement& element); |
| 146 | |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1417
diff
changeset
|
147 static bool IsUnknownTag(const DicomTag& tag); |
|
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1417
diff
changeset
|
148 |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
149 static DicomValue* ConvertLeafElement(DcmElement& element, |
|
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
150 DicomToJsonFlags flags, |
|
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
151 unsigned int maxStringLength, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
152 Encoding encoding, |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
153 bool hasCodeExtensions, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
154 const std::set<DicomTag>& ignoreTagLength); |
| 0 | 155 |
| 2126 | 156 static void ExtractHeaderAsJson(Json::Value& target, |
| 157 DcmMetaInfo& header, | |
| 158 DicomToJsonFormat format, | |
| 159 DicomToJsonFlags flags, | |
| 160 unsigned int maxStringLength); | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
161 |
|
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
162 static std::string GetTagName(const DicomTag& tag, |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
163 const std::string& privateCreator); |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
164 |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
165 static std::string GetTagName(const DcmElement& element); |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
166 |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
167 static std::string GetTagName(const DicomElement& element) |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
168 { |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
169 return GetTagName(element.GetTag(), ""); |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
170 } |
| 0 | 171 |
| 304 | 172 static DicomTag ParseTag(const char* name); |
| 0 | 173 |
| 304 | 174 static DicomTag ParseTag(const std::string& name) |
| 0 | 175 { |
| 304 | 176 return ParseTag(name.c_str()); |
| 0 | 177 } |
| 178 | |
| 179 static bool HasTag(const DicomMap& fields, | |
| 180 const std::string& tagName) | |
| 181 { | |
| 304 | 182 return fields.HasTag(ParseTag(tagName)); |
| 0 | 183 } |
| 184 | |
| 185 static const DicomValue& GetValue(const DicomMap& fields, | |
| 186 const std::string& tagName) | |
| 187 { | |
| 304 | 188 return fields.GetValue(ParseTag(tagName)); |
| 0 | 189 } |
| 190 | |
| 191 static void SetValue(DicomMap& target, | |
| 192 const std::string& tagName, | |
| 193 DicomValue* value) | |
| 194 { | |
|
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
195 const DicomTag tag = ParseTag(tagName); |
|
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
196 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value); |
| 0 | 197 } |
| 198 | |
| 199 static void ToJson(Json::Value& result, | |
| 1368 | 200 const DicomMap& values, |
| 201 bool simplify); | |
| 176 | 202 |
| 788 | 203 static std::string GenerateUniqueIdentifier(ResourceType level); |
|
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
204 |
|
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
205 static bool SaveToMemoryBuffer(std::string& buffer, |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
206 DcmDataset& dataSet); |
| 1360 | 207 |
|
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
208 static bool SaveToMemoryBuffer(std::string& buffer, |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
209 DcmFileFormat& dicom); |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
210 |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
211 static bool Transcode(std::string& buffer, |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
212 DcmFileFormat& dicom, |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
213 DicomTransferSyntax syntax, |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
214 const DcmRepresentationParameter* representation); |
|
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
215 |
|
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
216 static ValueRepresentation Convert(DcmEVR vr); |
|
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
217 |
|
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
218 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 219 |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
220 static DcmElement* CreateElementForTag(const DicomTag& tag, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
221 const std::string& privateCreator); |
| 1689 | 222 |
| 223 static void FillElementWithString(DcmElement& element, | |
| 1695 | 224 const std::string& utf8alue, // Encoded using UTF-8 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1765
diff
changeset
|
225 bool decodeDataUriScheme, |
| 1695 | 226 Encoding dicomEncoding); |
| 1689 | 227 |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1690
diff
changeset
|
228 static DcmElement* FromJson(const DicomTag& tag, |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
229 const Json::Value& element, // Encoded using UTF-8 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1765
diff
changeset
|
230 bool decodeDataUriScheme, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
231 Encoding dicomEncoding, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
232 const std::string& privateCreator); |
|
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
233 |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
234 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
235 |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
236 static Encoding ExtractEncoding(const Json::Value& json, |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
237 Encoding defaultEncoding); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
238 |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
239 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
240 bool generateIdentifiers, |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
241 bool decodeDataUriScheme, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
242 Encoding defaultEncoding, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
243 const std::string& privateCreator); |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
244 |
|
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
245 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
|
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
246 size_t size); |
|
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1936
diff
changeset
|
247 |
|
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1936
diff
changeset
|
248 static void FromJson(DicomMap& values, |
|
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1936
diff
changeset
|
249 const Json::Value& result); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
250 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
251 static bool LookupTransferSyntax(std::string& result, |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
252 DcmFileFormat& dicom); |
|
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
253 |
|
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
254 #if ORTHANC_ENABLE_LUA == 1 |
|
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
255 static void ExecuteToDicom(DicomMap& target, |
|
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
256 LuaFunctionCall& call); |
|
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
257 #endif |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
258 |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
259 static void ExtractDicomSummary(DicomMap& target, |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
260 DcmItem& dataset, |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
261 const std::set<DicomTag>& ignoreTagLength); |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
262 |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
263 static void ExtractDicomSummary(DicomMap& target, |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
264 DcmItem& dataset) |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
265 { |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
266 std::set<DicomTag> none; |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
267 ExtractDicomSummary(target, dataset, none); |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3232
diff
changeset
|
268 } |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
269 |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
270 static void ExtractDicomAsJson(Json::Value& target, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
271 DcmDataset& dataset, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
272 const std::set<DicomTag>& ignoreTagLength); |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
273 |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
274 static void InitializeCodecs(); |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
275 |
|
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
276 static void FinalizeCodecs(); |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
277 |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
278 static void Apply(DcmItem& dataset, |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
279 ITagVisitor& visitor, |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
280 Encoding defaultEncoding); |
|
3727
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
281 |
|
3743
33c19a6643e1
creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3727
diff
changeset
|
282 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target, |
|
33c19a6643e1
creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3727
diff
changeset
|
283 DicomTransferSyntax source); |
|
33c19a6643e1
creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3727
diff
changeset
|
284 |
|
33c19a6643e1
creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3727
diff
changeset
|
285 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
|
33c19a6643e1
creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3727
diff
changeset
|
286 E_TransferSyntax source); |
| 0 | 287 }; |
| 288 } |