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annotate OrthancServer/Sources/ServerContext.h @ 4935:acd3f72e2a21 more-tags

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split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
author Alain Mazy <am@osimis.io>
date Thu, 10 Mar 2022 19:00:43 +0100
parents 309fb4f02704
children 8422e4f99a18
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "IServerListener.h"
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26 #include "LuaScripting.h"
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27 #include "OrthancHttpHandler.h"
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28 #include "ServerIndex.h"
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29 #include "ServerJobs/IStorageCommitmentFactory.h"
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30
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31 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h"
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32 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h"
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33 #include "../../OrthancFramework/Sources/DicomParsing/IDicomTranscoder.h"
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34 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomCache.h"
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35 #include "../../OrthancFramework/Sources/FileStorage/StorageCache.h"
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36 #include "../../OrthancFramework/Sources/MultiThreading/Semaphore.h"
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37
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38
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39 namespace Orthanc
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40 {
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41 class DicomInstanceToStore;
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42 class IStorageArea;
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43 class JobsEngine;
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44 class MetricsRegistry;
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45 class OrthancPlugins;
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46 class ParsedDicomFile;
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47 class RestApiOutput;
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48 class SetOfInstancesJob;
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49 class SharedArchive;
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50 class SharedMessageQueue;
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51 class StorageCommitmentReports;
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52
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53
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54 /**
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55 * This class is responsible for maintaining the storage area on the
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56 * filesystem (including compression), as well as the index of the
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57 * DICOM store. It implements the required locking mechanisms.
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58 **/
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59 class ServerContext :
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60 public IStorageCommitmentFactory,
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61 public IDicomTranscoder,
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62 private JobsRegistry::IObserver
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63 {
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64 friend class ServerIndex; // To access "RemoveFile()"
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65
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66 public:
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67 class ILookupVisitor : public boost::noncopyable
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68 {
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69 public:
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70 virtual ~ILookupVisitor()
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71 {
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72 }
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73
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74 virtual bool IsDicomAsJsonNeeded() const = 0;
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75
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76 virtual void MarkAsComplete() = 0;
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77
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78 // NB: "dicomAsJson" must *not* be deleted, and can be NULL if
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79 // "!IsDicomAsJsonNeeded()"
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80 virtual void Visit(const std::string& publicId,
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81 const std::string& instanceId,
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82 const DicomMap& mainDicomTags,
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83 const Json::Value* dicomAsJson) = 0;
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84 };
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85
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86 struct StoreResult
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87 {
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88 private:
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89 StoreStatus status_;
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90 uint16_t cstoreStatusCode_;
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91 // uint16_t httpStatusCode_; // for future use
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92
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93 public:
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94 StoreResult();
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95
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96 void SetStatus(StoreStatus status)
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97 {
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98 status_ = status;
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99 }
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100
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101 StoreStatus GetStatus()
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102 {
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103 return status_;
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104 }
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105
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106 void SetCStoreStatusCode(uint16_t statusCode)
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107 {
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108 cstoreStatusCode_ = statusCode;
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109 }
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110
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111 uint16_t GetCStoreStatusCode()
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112 {
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113 return cstoreStatusCode_;
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114 }
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115 };
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116
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117 private:
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118 class LuaServerListener : public IServerListener
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119 {
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120 private:
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121 ServerContext& context_;
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122
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123 public:
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124 explicit LuaServerListener(ServerContext& context) :
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125 context_(context)
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126 {
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127 }
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128
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129 virtual void SignalStoredInstance(const std::string& publicId,
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130 const DicomInstanceToStore& instance,
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131 const Json::Value& simplifiedTags) ORTHANC_OVERRIDE
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132 {
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133 context_.mainLua_.SignalStoredInstance(publicId, instance, simplifiedTags);
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134 }
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135
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136 virtual void SignalChange(const ServerIndexChange& change) ORTHANC_OVERRIDE
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137 {
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138 context_.mainLua_.SignalChange(change);
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139 }
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140
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141 virtual bool FilterIncomingInstance(const DicomInstanceToStore& instance,
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142 const Json::Value& simplified) ORTHANC_OVERRIDE
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143 {
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144 return context_.filterLua_.FilterIncomingInstance(instance, simplified);
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145 }
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146
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147 virtual bool FilterIncomingCStoreInstance(uint16_t& dimseStatus,
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148 const DicomInstanceToStore& instance,
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149 const Json::Value& simplified) ORTHANC_OVERRIDE
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150 {
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151 return context_.filterLua_.FilterIncomingCStoreInstance(dimseStatus, instance, simplified);
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152 }
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153 };
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154
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155 class ServerListener
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156 {
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157 private:
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158 IServerListener *listener_;
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159 std::string description_;
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160
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161 public:
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162 ServerListener(IServerListener& listener,
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163 const std::string& description) :
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164 listener_(&listener),
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165 description_(description)
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166 {
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167 }
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168
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169 IServerListener& GetListener()
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170 {
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171 return *listener_;
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172 }
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173
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174 const std::string& GetDescription()
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175 {
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176 return description_;
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177 }
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178 };
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179
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180 typedef std::list<ServerListener> ServerListeners;
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181
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182
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183 static void ChangeThread(ServerContext* that,
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184 unsigned int sleepDelay);
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185
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186 static void SaveJobsThread(ServerContext* that,
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187 unsigned int sleepDelay);
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188
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189 void SaveJobsEngine();
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190
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191 virtual void SignalJobSubmitted(const std::string& jobId) ORTHANC_OVERRIDE;
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192
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193 virtual void SignalJobSuccess(const std::string& jobId) ORTHANC_OVERRIDE;
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194
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195 virtual void SignalJobFailure(const std::string& jobId) ORTHANC_OVERRIDE;
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196
224
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197 ServerIndex index_;
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198 IStorageArea& area_;
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199 StorageCache storageCache_;
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200
236
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201 bool compressionEnabled_;
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202 bool storeMD5_;
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203
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204 Semaphore largeDicomThrottler_; // New in Orthanc 1.9.0 (notably for very large DICOM files in WSI)
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205 ParsedDicomCache dicomCache_;
224
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206
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207 LuaScripting mainLua_;
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208 LuaScripting filterLua_;
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209 LuaServerListener luaListener_;
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210 std::unique_ptr<SharedArchive> mediaArchive_;
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211
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212 // The "JobsEngine" must be *after* "LuaScripting", as
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213 // "LuaScripting" embeds "LuaJobManager" that registers as an
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214 // observer to "SequenceOfOperationsJob", whose lifetime
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215 // corresponds to that of "JobsEngine". It must also be after
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216 // "mediaArchive_", as jobs might access this archive.
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217 JobsEngine jobsEngine_;
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218
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219 #if ORTHANC_ENABLE_PLUGINS == 1
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220 OrthancPlugins* plugins_;
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221 #endif
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222
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223 ServerListeners listeners_;
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224 boost::shared_mutex listenersMutex_;
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225
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226 bool done_;
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227 bool haveJobsChanged_;
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228 bool isJobsEngineUnserialized_;
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229 SharedMessageQueue pendingChanges_;
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230 boost::thread changeThread_;
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231 boost::thread saveJobsThread_;
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232
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233 std::unique_ptr<SharedArchive> queryRetrieveArchive_;
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234 std::string defaultLocalAet_;
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235 OrthancHttpHandler httpHandler_;
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236 bool saveJobs_;
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237 FindStorageAccessMode findStorageAccessMode_;
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238 unsigned int limitFindInstances_;
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239 unsigned int limitFindResults_;
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240
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241 std::unique_ptr<MetricsRegistry> metricsRegistry_;
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242 bool isHttpServerSecure_;
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243 bool isExecuteLuaEnabled_;
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244 bool overwriteInstances_;
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245
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246 std::unique_ptr<StorageCommitmentReports> storageCommitmentReports_;
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247
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248 bool transcodeDicomProtocol_;
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249 std::unique_ptr<IDicomTranscoder> dcmtkTranscoder_;
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250 BuiltinDecoderTranscoderOrder builtinDecoderTranscoderOrder_;
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251 bool isIngestTranscoding_;
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252 DicomTransferSyntax ingestTransferSyntax_;
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253 bool ingestTranscodingOfUncompressed_;
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254 bool ingestTranscodingOfCompressed_;
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255
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256 // New in Orthanc 1.9.0
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257 DicomTransferSyntax preferredTransferSyntax_;
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258 boost::mutex dynamicOptionsMutex_;
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259 bool isUnknownSopClassAccepted_;
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260 std::set<DicomTransferSyntax> acceptedTransferSyntaxes_;
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261
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262 StoreResult StoreAfterTranscoding(std::string& resultPublicId,
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263 DicomInstanceToStore& dicom,
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264 StoreInstanceMode mode);
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265
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266 void ApplyInternal(ILookupVisitor& visitor,
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267 const DatabaseLookup& lookup,
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268 ResourceType queryLevel,
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269 size_t since,
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270 size_t limit);
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271
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272 void PublishDicomCacheMetrics();
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273
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274 // This method must only be called from "ServerIndex"!
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275 void RemoveFile(const std::string& fileUuid,
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276 FileContentType type);
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277
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278 // This DicomModification object is intended to be used as a
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279 // "rules engine" when de-identifying logs for C-Find, C-Get, and
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280 // C-Move queries (new in Orthanc 1.8.2)
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281 DicomModification logsDeidentifierRules_;
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282 bool deidentifyLogs_;
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283
224
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284 public:
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285 class DicomCacheLocker : public boost::noncopyable
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286 {
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287 private:
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288 ServerContext& context_;
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289 std::string instancePublicId_;
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290 std::unique_ptr<ParsedDicomCache::Accessor> accessor_;
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291 std::unique_ptr<ParsedDicomFile> dicom_;
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292 size_t dicomSize_;
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293 std::unique_ptr<Semaphore::Locker> largeDicomLocker_;
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294
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295 public:
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296 DicomCacheLocker(ServerContext& context,
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297 const std::string& instancePublicId);
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298
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299 ~DicomCacheLocker();
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300
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301 ParsedDicomFile& GetDicom() const;
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302 };
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303
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304 ServerContext(IDatabaseWrapper& database,
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305 IStorageArea& area,
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306 bool unitTesting,
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307 size_t maxCompletedJobs);
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308
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309 ~ServerContext();
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310
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311 void SetupJobsEngine(bool unitTesting,
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312 bool loadJobsFromDatabase);
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313
224
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314 ServerIndex& GetIndex()
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315 {
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316 return index_;
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317 }
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318
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319 void SetMaximumStorageCacheSize(size_t size)
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320 {
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321 return storageCache_.SetMaximumSize(size);
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322 }
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323
236
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diff changeset
324 void SetCompressionEnabled(bool enabled);
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325
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326 bool IsCompressionEnabled() const
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327 {
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328 return compressionEnabled_;
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329 }
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330
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331 bool AddAttachment(int64_t& newRevision,
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332 const std::string& resourceId,
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333 FileContentType attachmentType,
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334 const void* data,
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diff changeset
335 size_t size,
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336 bool hasOldRevision,
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337 int64_t oldRevision,
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338 const std::string& oldMD5);
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339
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diff changeset
340 StoreResult Store(std::string& resultPublicId,
3814
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341 DicomInstanceToStore& dicom,
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diff changeset
342 StoreInstanceMode mode);
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343
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344 void AnswerAttachment(RestApiOutput& output,
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345 const std::string& resourceId,
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346 FileContentType content);
226
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diff changeset
347
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348 void ChangeAttachmentCompression(const std::string& resourceId,
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349 FileContentType attachmentType,
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diff changeset
350 CompressionType compression);
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diff changeset
351
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diff changeset
352 void ReadDicomAsJson(Json::Value& result,
2409
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353 const std::string& instancePublicId,
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354 const std::set<DicomTag>& ignoreTagLength);
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355
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356 void ReadDicomAsJson(Json::Value& result,
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diff changeset
357 const std::string& instancePublicId);
227
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diff changeset
358
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diff changeset
359 void ReadDicom(std::string& dicom,
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360 const std::string& instancePublicId);
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diff changeset
361
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362 void ReadDicomForHeader(std::string& dicom,
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363 const std::string& instancePublicId);
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diff changeset
364
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diff changeset
365 bool ReadDicomUntilPixelData(std::string& dicom,
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366 const std::string& instancePublicId);
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diff changeset
367
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diff changeset
368 // This method is for low-level operations on "/instances/.../attachments/..."
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diff changeset
369 void ReadAttachment(std::string& result,
4627
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diff changeset
370 int64_t& revision,
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diff changeset
371 const std::string& instancePublicId,
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diff changeset
372 FileContentType content,
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diff changeset
373 bool uncompressIfNeeded);
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diff changeset
374
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diff changeset
375 void SetStoreMD5ForAttachments(bool storeMD5);
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376
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377 bool IsStoreMD5ForAttachments() const
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diff changeset
378 {
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379 return storeMD5_;
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380 }
771
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381
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382 JobsEngine& GetJobsEngine()
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383 {
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384 return jobsEngine_;
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diff changeset
385 }
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
386
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4640
diff changeset
387 bool DeleteResource(Json::Value& remainingAncestor,
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
388 const std::string& uuid,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
389 ResourceType expectedType);
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1146
diff changeset
390
1198
1169528a9a5f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1189
diff changeset
391 void SignalChange(const ServerIndexChange& change);
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1223
diff changeset
392
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
393 SharedArchive& GetQueryRetrieveArchive()
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
394 {
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
395 return *queryRetrieveArchive_;
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
396 }
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
397
2965
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
398 SharedArchive& GetMediaArchive()
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
399 {
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
400 return *mediaArchive_;
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
401 }
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
402
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
403 const std::string& GetDefaultLocalApplicationEntityTitle() const
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
404 {
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
405 return defaultLocalAet_;
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
406 }
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
407
2617
912a767911b0 back to a single Lua context
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
408 LuaScripting& GetLuaScripting()
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
409 {
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2673
diff changeset
410 return mainLua_;
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
411 }
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
412
1444
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
413 OrthancHttpHandler& GetHttpHandler()
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
414 {
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
415 return httpHandler_;
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
416 }
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
417
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
418 void Stop();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
419
3021
2cbafb5d5a62 renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3015
diff changeset
420 void Apply(ILookupVisitor& visitor,
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
421 const DatabaseLookup& lookup,
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
422 ResourceType queryLevel,
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
423 size_t since,
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
424 size_t limit);
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1753
diff changeset
425
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
426 bool LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
427 const std::string& publicId,
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4457
diff changeset
428 ResourceType level,
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
429 MetadataType type);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
430
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
431
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
432 /**
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
433 * Management of the plugins
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
434 **/
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
435
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
436 #if ORTHANC_ENABLE_PLUGINS == 1
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
437 void SetPlugins(OrthancPlugins& plugins);
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
438
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
439 void ResetPlugins();
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
440
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
441 const OrthancPlugins& GetPlugins() const;
1741
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
442
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
443 OrthancPlugins& GetPlugins();
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
444 #endif
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
445
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
446 bool HasPlugins() const;
2626
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
447
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
448 void AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
449 const std::string& publicId);
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
450
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
451 void SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
452
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
453 void SignalUpdatedPeers();
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
454
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
455 MetricsRegistry& GetMetricsRegistry()
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
456 {
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
457 return *metricsRegistry_;
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
458 }
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
459
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
460 void SetHttpServerSecure(bool isSecure)
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
461 {
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
462 isHttpServerSecure_ = isSecure;
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
463 }
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
464
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
465 bool IsHttpServerSecure() const
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
466 {
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
467 return isHttpServerSecure_;
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
468 }
3535
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
469
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
470 void SetExecuteLuaEnabled(bool enabled)
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
471 {
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
472 isExecuteLuaEnabled_ = enabled;
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
473 }
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
474
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
475 bool IsExecuteLuaEnabled() const
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
476 {
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
477 return isExecuteLuaEnabled_;
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
478 }
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
479
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
480 void SetOverwriteInstances(bool overwrite)
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
481 {
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
482 overwriteInstances_ = overwrite;
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
483 }
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
484
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
485 bool IsOverwriteInstances() const
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
486 {
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
487 return overwriteInstances_;
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
488 }
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
489
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
490 virtual IStorageCommitmentFactory::ILookupHandler*
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
491 CreateStorageCommitment(const std::string& jobId,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
492 const std::string& transactionUid,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
493 const std::vector<std::string>& sopClassUids,
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
494 const std::vector<std::string>& sopInstanceUids,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
495 const std::string& remoteAet,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
496 const std::string& calledAet) ORTHANC_OVERRIDE;
3736
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
497
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
498 StorageCommitmentReports& GetStorageCommitmentReports()
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
499 {
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
500 return *storageCommitmentReports_;
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
501 }
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
502
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
503 ImageAccessor* DecodeDicomFrame(const std::string& publicId,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
504 unsigned int frameIndex);
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
505
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
506 ImageAccessor* DecodeDicomFrame(const DicomInstanceToStore& dicom,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
507 unsigned int frameIndex);
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
508
3980
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
509 ImageAccessor* DecodeDicomFrame(const void* dicom,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
510 size_t size,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
511 unsigned int frameIndex);
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
512
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
513 void StoreWithTranscoding(std::string& sopClassUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
514 std::string& sopInstanceUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
515 DicomStoreUserConnection& connection,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
516 const std::string& dicom,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
517 bool hasMoveOriginator,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
518 const std::string& moveOriginatorAet,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
519 uint16_t moveOriginatorId);
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
520
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
521 // This method can be used even if the global option
3911
0ef7f4528be2 renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3910
diff changeset
522 // "TranscodeDicomProtocol" is set to "false"
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
523 virtual bool Transcode(DicomImage& target,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
524 DicomImage& source /* in, "GetParsed()" possibly modified */,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
525 const std::set<DicomTransferSyntax>& allowedSyntaxes,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
526 bool allowNewSopInstanceUid) ORTHANC_OVERRIDE;
3959
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
527
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
528 bool IsTranscodeDicomProtocol() const
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
529 {
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
530 return transcodeDicomProtocol_;
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
531 }
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4205
diff changeset
532
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
533 const std::string& GetDeidentifiedContent(const DicomElement& element) const;
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
534
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
535 void GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
536
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
537 void SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
538
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
539 bool IsUnknownSopClassAccepted();
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
540
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
541 void SetUnknownSopClassAccepted(bool accepted);
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
542
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
543 bool ExpandResource(Json::Value& target,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
544 const std::string& publicId,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
545 ResourceType level,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
546 DicomToJsonFormat format);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
547
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548 };
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 }