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annotate OrthancServer/ServerContext.h @ 3174:8ea7c4546c3a

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primitives to collect metrics in Orthanc
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 29 Jan 2019 15:15:48 +0100
parents 1fe524e211af
children 2090ec6a83a5
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #include "IServerListener.h"
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37 #include "LuaScripting.h"
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38 #include "OrthancHttpHandler.h"
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39 #include "ServerIndex.h"
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40
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41 #include "../Core/Cache/MemoryCache.h"
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42
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43
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44 namespace Orthanc
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45 {
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46 class DicomInstanceToStore;
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47 class IStorageArea;
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48 class JobsEngine;
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49 class MetricsRegistry;
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50 class OrthancPlugins;
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51 class ParsedDicomFile;
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52 class RestApiOutput;
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53 class SetOfInstancesJob;
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54 class SharedArchive;
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55 class SharedMessageQueue;
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56
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57
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58 /**
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59 * This class is responsible for maintaining the storage area on the
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60 * filesystem (including compression), as well as the index of the
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61 * DICOM store. It implements the required locking mechanisms.
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62 **/
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63 class ServerContext : private JobsRegistry::IObserver
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64 {
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65 public:
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66 class ILookupVisitor : public boost::noncopyable
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67 {
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68 public:
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69 virtual ~ILookupVisitor()
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70 {
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71 }
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72
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73 virtual bool IsDicomAsJsonNeeded() const = 0;
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74
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75 virtual void MarkAsComplete() = 0;
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76
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77 virtual void Visit(const std::string& publicId,
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78 const std::string& instanceId,
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79 const DicomMap& mainDicomTags,
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80 const Json::Value* dicomAsJson) = 0;
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81 };
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82
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83
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84 private:
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85 enum LookupMode
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86 {
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87 LookupMode_DatabaseOnly,
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88 LookupMode_DiskOnAnswer,
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89 LookupMode_DiskOnLookupAndAnswer
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90 };
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91
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92
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93 class LuaServerListener : public IServerListener
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94 {
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95 private:
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96 ServerContext& context_;
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97
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98 public:
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99 LuaServerListener(ServerContext& context) :
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100 context_(context)
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101 {
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102 }
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103
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104 virtual void SignalStoredInstance(const std::string& publicId,
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105 DicomInstanceToStore& instance,
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106 const Json::Value& simplifiedTags)
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107 {
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108 context_.mainLua_.SignalStoredInstance(publicId, instance, simplifiedTags);
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109 }
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110
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111 virtual void SignalChange(const ServerIndexChange& change)
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112 {
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113 context_.mainLua_.SignalChange(change);
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114 }
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115
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116 virtual bool FilterIncomingInstance(const DicomInstanceToStore& instance,
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117 const Json::Value& simplified)
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118 {
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119 return context_.filterLua_.FilterIncomingInstance(instance, simplified);
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120 }
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121 };
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122
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123 class DicomCacheProvider : public ICachePageProvider
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124 {
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125 private:
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126 ServerContext& context_;
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127
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128 public:
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129 DicomCacheProvider(ServerContext& context) : context_(context)
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130 {
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131 }
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132
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133 virtual IDynamicObject* Provide(const std::string& id);
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134 };
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135
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136 class ServerListener
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137 {
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138 private:
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139 IServerListener *listener_;
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140 std::string description_;
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141
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142 public:
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143 ServerListener(IServerListener& listener,
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144 const std::string& description) :
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145 listener_(&listener),
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146 description_(description)
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147 {
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148 }
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149
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150 IServerListener& GetListener()
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151 {
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152 return *listener_;
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153 }
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154
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155 const std::string& GetDescription()
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156 {
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157 return description_;
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158 }
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159 };
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160
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161 typedef std::list<ServerListener> ServerListeners;
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162
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163
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164 static void ChangeThread(ServerContext* that,
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165 unsigned int sleepDelay);
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166
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167 static void SaveJobsThread(ServerContext* that,
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168 unsigned int sleepDelay);
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169
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170 void ReadDicomAsJsonInternal(std::string& result,
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171 const std::string& instancePublicId);
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172
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173 void SaveJobsEngine();
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174
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175 virtual void SignalJobSubmitted(const std::string& jobId);
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176
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177 virtual void SignalJobSuccess(const std::string& jobId);
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178
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179 virtual void SignalJobFailure(const std::string& jobId);
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180
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181 ServerIndex index_;
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182 IStorageArea& area_;
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183
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184 bool compressionEnabled_;
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185 bool storeMD5_;
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186
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187 DicomCacheProvider provider_;
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188 boost::mutex dicomCacheMutex_;
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189 MemoryCache dicomCache_;
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190
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191 LuaScripting mainLua_;
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192 LuaScripting filterLua_;
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193 LuaServerListener luaListener_;
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194 std::auto_ptr<SharedArchive> mediaArchive_;
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195
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196 // The "JobsEngine" must be *after* "LuaScripting", as
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197 // "LuaScripting" embeds "LuaJobManager" that registers as an
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198 // observer to "SequenceOfOperationsJob", whose lifetime
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199 // corresponds to that of "JobsEngine". It must also be after
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200 // "mediaArchive_", as jobs might access this archive.
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201 JobsEngine jobsEngine_;
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202
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203 #if ORTHANC_ENABLE_PLUGINS == 1
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204 OrthancPlugins* plugins_;
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205 #endif
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206
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207 ServerListeners listeners_;
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208 boost::recursive_mutex listenersMutex_;
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209
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210 bool done_;
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211 bool haveJobsChanged_;
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212 bool isJobsEngineUnserialized_;
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213 SharedMessageQueue pendingChanges_;
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214 boost::thread changeThread_;
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215 boost::thread saveJobsThread_;
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216
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217 std::auto_ptr<SharedArchive> queryRetrieveArchive_;
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218 std::string defaultLocalAet_;
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219 OrthancHttpHandler httpHandler_;
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220 bool saveJobs_;
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221
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222 std::auto_ptr<MetricsRegistry> metricsRegistry_;
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223
224
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224 public:
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225 class DicomCacheLocker : public boost::noncopyable
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226 {
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227 private:
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228 ServerContext& that_;
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229 ParsedDicomFile *dicom_;
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230 boost::mutex::scoped_lock lock_;
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231
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232 public:
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233 DicomCacheLocker(ServerContext& that,
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234 const std::string& instancePublicId);
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235
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236 ~DicomCacheLocker();
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237
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238 ParsedDicomFile& GetDicom()
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239 {
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240 return *dicom_;
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241 }
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242 };
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243
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244 ServerContext(IDatabaseWrapper& database,
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245 IStorageArea& area,
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246 bool unitTesting,
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247 size_t maxCompletedJobs);
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248
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249 ~ServerContext();
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250
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251 void SetupJobsEngine(bool unitTesting,
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252 bool loadJobsFromDatabase);
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253
224
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254 ServerIndex& GetIndex()
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255 {
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256 return index_;
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257 }
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258
236
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259 void SetCompressionEnabled(bool enabled);
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260
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261 bool IsCompressionEnabled() const
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262 {
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263 return compressionEnabled_;
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264 }
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265
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266 void RemoveFile(const std::string& fileUuid,
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267 FileContentType type);
226
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268
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269 bool AddAttachment(const std::string& resourceId,
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270 FileContentType attachmentType,
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271 const void* data,
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272 size_t size);
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273
1004
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diff changeset
274 StoreStatus Store(std::string& resultPublicId,
a226e0959d8b DicomInstanceToStore
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parents: 1003
diff changeset
275 DicomInstanceToStore& dicom);
a226e0959d8b DicomInstanceToStore
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diff changeset
276
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277 void AnswerAttachment(RestApiOutput& output,
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff changeset
278 const std::string& resourceId,
1146
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diff changeset
279 FileContentType content);
226
8a26a8e85edf refactoring to read files
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parents: 224
diff changeset
280
1700
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diff changeset
281 void ChangeAttachmentCompression(const std::string& resourceId,
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diff changeset
282 FileContentType attachmentType,
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diff changeset
283 CompressionType compression);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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284
2127
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diff changeset
285 void ReadDicomAsJson(std::string& result,
2409
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286 const std::string& instancePublicId,
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287 const std::set<DicomTag>& ignoreTagLength);
2127
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288
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diff changeset
289 void ReadDicomAsJson(Json::Value& result,
2409
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290 const std::string& instancePublicId,
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291 const std::set<DicomTag>& ignoreTagLength);
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292
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diff changeset
293 void ReadDicomAsJson(std::string& result,
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294 const std::string& instancePublicId)
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295 {
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296 std::set<DicomTag> ignoreTagLength;
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297 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
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298 }
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299
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diff changeset
300 void ReadDicomAsJson(Json::Value& result,
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301 const std::string& instancePublicId)
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diff changeset
302 {
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303 std::set<DicomTag> ignoreTagLength;
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304 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
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parents: 2382
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305 }
227
209ca3f6db62 dicom-scu from rest
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306
2124
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diff changeset
307 void ReadDicom(std::string& dicom,
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parents: 2122
diff changeset
308 const std::string& instancePublicId)
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parents: 2122
diff changeset
309 {
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff changeset
310 ReadAttachment(dicom, instancePublicId, FileContentType_Dicom, true);
2124
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diff changeset
311 }
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parents: 2122
diff changeset
312
227
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diff changeset
313 // TODO CACHING MECHANISM AT THIS POINT
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diff changeset
314 void ReadAttachment(std::string& result,
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diff changeset
315 const std::string& instancePublicId,
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diff changeset
316 FileContentType content,
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parents: 2127
diff changeset
317 bool uncompressIfNeeded);
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diff changeset
318
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff changeset
319 void ReadAttachment(std::string& result,
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diff changeset
320 const FileInfo& attachment);
1778
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parents: 1758
diff changeset
321
695
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diff changeset
322 void SetStoreMD5ForAttachments(bool storeMD5);
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parents: 689
diff changeset
323
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diff changeset
324 bool IsStoreMD5ForAttachments() const
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parents: 689
diff changeset
325 {
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
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parents: 1456
diff changeset
326 return storeMD5_;
695
c59bc408fb10 parameter to disable the computation of the MD5
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parents: 689
diff changeset
327 }
771
537837f50fbb refactoring
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parents: 699
diff changeset
328
2570
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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diff changeset
329 JobsEngine& GetJobsEngine()
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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diff changeset
330 {
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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diff changeset
331 return jobsEngine_;
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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parents: 2447
diff changeset
332 }
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
333
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
334 bool DeleteResource(Json::Value& target,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
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parents: 1134
diff changeset
335 const std::string& uuid,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
336 ResourceType expectedType);
1189
6b9b02a16e99 NewChildInstance change type
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parents: 1146
diff changeset
337
1198
1169528a9a5f refactoring
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parents: 1189
diff changeset
338 void SignalChange(const ServerIndexChange& change);
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1223
diff changeset
339
1368
b22ba8c5edbe query retrieve
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parents: 1288
diff changeset
340 SharedArchive& GetQueryRetrieveArchive()
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parents: 1288
diff changeset
341 {
2940
4767d36679ed refactoring access to Orthanc configuration
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diff changeset
342 return *queryRetrieveArchive_;
1368
b22ba8c5edbe query retrieve
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parents: 1288
diff changeset
343 }
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
344
2965
9c0b0a6d8b54 MediaArchiveSize configuration option
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parents: 2950
diff changeset
345 SharedArchive& GetMediaArchive()
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
346 {
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
347 return *mediaArchive_;
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
348 }
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
349
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
350 const std::string& GetDefaultLocalApplicationEntityTitle() const
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
351 {
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
352 return defaultLocalAet_;
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
353 }
1433
461e7554bff7 refactoring: LuaScripting
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parents: 1427
diff changeset
354
2617
912a767911b0 back to a single Lua context
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parents: 2616
diff changeset
355 LuaScripting& GetLuaScripting()
1433
461e7554bff7 refactoring: LuaScripting
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parents: 1427
diff changeset
356 {
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2673
diff changeset
357 return mainLua_;
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
358 }
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
359
1444
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
360 OrthancHttpHandler& GetHttpHandler()
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
361 {
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
362 return httpHandler_;
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
363 }
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
364
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
365 void Stop();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
366
3021
2cbafb5d5a62 renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3015
diff changeset
367 void Apply(ILookupVisitor& visitor,
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
368 const DatabaseLookup& lookup,
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
369 ResourceType queryLevel,
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
370 size_t since,
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
371 size_t limit);
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1753
diff changeset
372
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
373 bool LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
374 const std::string& publicId,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
375 MetadataType type);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
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parents: 3001
diff changeset
376
1434
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parents: 1433
diff changeset
377
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
378 /**
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
379 * Management of the plugins
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
380 **/
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
381
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
382 #if ORTHANC_ENABLE_PLUGINS == 1
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
383 void SetPlugins(OrthancPlugins& plugins);
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
384
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
385 void ResetPlugins();
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
386
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
387 const OrthancPlugins& GetPlugins() const;
1741
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
388
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
389 OrthancPlugins& GetPlugins();
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
390 #endif
eb8fbcf008b5 fix build with plugins disabled
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parents: 1549
diff changeset
391
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
392 bool HasPlugins() const;
2626
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
393
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
394 void AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
395 const std::string& publicId);
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
396
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
397 void SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
398
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
399 void SignalUpdatedPeers();
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
400
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
401 MetricsRegistry& GetMetricsRegistry()
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
402 {
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
403 return *metricsRegistry_;
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
404 }
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 };
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 }