Mercurial > hg > orthanc

annotate Core/DicomParsing/DicomDirWriter.cpp @ 2447:878b59270859

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 02 Jan 2018 09:35:07 +0100
parents b340f0a9022c
children 8cc3ca64a534
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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36
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37 /*=========================================================================
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38
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39 This file is based on portions of the following project:
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40
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41 Program: DCMTK 3.6.0
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42 Module: http://dicom.offis.de/dcmtk.php.en
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43
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44 Copyright (C) 1994-2011, OFFIS e.V.
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45 All rights reserved.
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46
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47 This software and supporting documentation were developed by
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48
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49 OFFIS e.V.
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50 R&D Division Health
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51 Escherweg 2
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52 26121 Oldenburg, Germany
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53
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54 Redistribution and use in source and binary forms, with or without
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55 modification, are permitted provided that the following conditions
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56 are met:
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57
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58 - Redistributions of source code must retain the above copyright
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59 notice, this list of conditions and the following disclaimer.
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60
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61 - Redistributions in binary form must reproduce the above copyright
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62 notice, this list of conditions and the following disclaimer in the
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63 documentation and/or other materials provided with the distribution.
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64
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65 - Neither the name of OFFIS nor the names of its contributors may be
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66 used to endorse or promote products derived from this software
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67 without specific prior written permission.
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68
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69 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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70 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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71 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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72 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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73 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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74 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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75 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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76 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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77 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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78 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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79 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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80
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81 =========================================================================*/
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82
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84
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85 /***
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86
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87 Validation:
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88
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89 # sudo apt-get install dicom3tools
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90 # dciodvfy DICOMDIR 2>&1 | less
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91 # dcentvfy DICOMDIR 2>&1 | less
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92
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93 http://www.dclunie.com/dicom3tools/dciodvfy.html
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94
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95 DICOMDIR viewer working with Wine under Linux:
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96 http://www.microdicom.com/
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97
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98 ***/
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99
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101 #include "../PrecompiledHeaders.h"
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102 #include "DicomDirWriter.h"
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103
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104 #include "FromDcmtkBridge.h"
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105 #include "ToDcmtkBridge.h"
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106
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107 #include "../Logging.h"
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108 #include "../OrthancException.h"
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109 #include "../TemporaryFile.h"
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110 #include "../Toolbox.h"
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111 #include "../SystemToolbox.h"
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112
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113 #include <dcmtk/dcmdata/dcdicdir.h>
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114 #include <dcmtk/dcmdata/dcmetinf.h>
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115 #include <dcmtk/dcmdata/dcdeftag.h>
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116 #include <dcmtk/dcmdata/dcuid.h>
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117 #include <dcmtk/dcmdata/dcddirif.h>
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118 #include <dcmtk/dcmdata/dcvrui.h>
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119 #include <dcmtk/dcmdata/dcsequen.h>
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120 #include <dcmtk/dcmdata/dcostrmf.h>
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121 #include "dcmtk/dcmdata/dcvrda.h" /* for class DcmDate */
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122 #include "dcmtk/dcmdata/dcvrtm.h" /* for class DcmTime */
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123
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124 #include <memory>
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125
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126 namespace Orthanc
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127 {
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128 class DicomDirWriter::PImpl
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129 {
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130 private:
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131 std::string fileSetId_;
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132 bool extendedSopClass_;
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133 TemporaryFile file_;
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134 std::auto_ptr<DcmDicomDir> dir_;
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135
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136 typedef std::pair<ResourceType, std::string> IndexKey;
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137 typedef std::map<IndexKey, DcmDirectoryRecord* > Index;
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138 Index index_;
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139
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140
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141 DcmDicomDir& GetDicomDir()
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142 {
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143 if (dir_.get() == NULL)
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144 {
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145 dir_.reset(new DcmDicomDir(file_.GetPath().c_str(),
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146 fileSetId_.c_str()));
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147 //SetTagValue(dir_->getRootRecord(), DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(Encoding_Utf8));
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148 }
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149
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150 return *dir_;
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151 }
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152
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153
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154 DcmDirectoryRecord& GetRoot()
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155 {
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156 return GetDicomDir().getRootRecord();
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157 }
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158
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159
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160 static bool GetUtf8TagValue(std::string& result,
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161 DcmItem& source,
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162 Encoding encoding,
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163 const DcmTagKey& key)
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164 {
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165 DcmElement* element = NULL;
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166
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167 if (source.findAndGetElement(key, element).good())
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168 {
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169 char* s = NULL;
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170 if (element->isLeaf() &&
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171 element->getString(s).good() &&
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172 s != NULL)
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173 {
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174 result = Toolbox::ConvertToUtf8(s, encoding);
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175 return true;
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176 }
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177 }
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178
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179 result.clear();
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180 return false;
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181 }
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182
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183
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184 static void SetTagValue(DcmDirectoryRecord& target,
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185 const DcmTagKey& key,
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186 const std::string& valueUtf8)
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187 {
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188 std::string s = Toolbox::ConvertFromUtf8(valueUtf8, Encoding_Ascii);
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189
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190 if (!target.putAndInsertString(key, s.c_str()).good())
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191 {
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192 throw OrthancException(ErrorCode_InternalError);
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193 }
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194 }
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195
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196
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197
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198 static bool CopyString(DcmDirectoryRecord& target,
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199 DcmDataset& source,
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200 Encoding encoding,
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201 const DcmTagKey& key,
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202 bool optional,
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203 bool copyEmpty)
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204 {
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205 if (optional &&
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206 !source.tagExistsWithValue(key) &&
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207 !(copyEmpty && source.tagExists(key)))
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208 {
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209 return false;
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210 }
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211
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212 std::string value;
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213 bool found = GetUtf8TagValue(value, source, encoding, key);
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214
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215 if (!found)
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216 {
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217 // We don't raise an exception if "!optional", even if this
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218 // results in an invalid DICOM file
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219 value.clear();
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220 }
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221
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222 SetTagValue(target, key, value);
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223 return found;
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224 }
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225
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226
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227 static void CopyStringType1(DcmDirectoryRecord& target,
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228 DcmDataset& source,
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229 Encoding encoding,
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230 const DcmTagKey& key)
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231 {
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232 CopyString(target, source, encoding, key, false, false);
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233 }
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234
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235 static void CopyStringType1C(DcmDirectoryRecord& target,
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236 DcmDataset& source,
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237 Encoding encoding,
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238 const DcmTagKey& key)
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239 {
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240 CopyString(target, source, encoding, key, true, false);
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241 }
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242
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243 static void CopyStringType2(DcmDirectoryRecord& target,
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244 DcmDataset& source,
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245 Encoding encoding,
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246 const DcmTagKey& key)
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247 {
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248 CopyString(target, source, encoding, key, false, true);
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249 }
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250
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251 static void CopyStringType3(DcmDirectoryRecord& target,
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252 DcmDataset& source,
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253 Encoding encoding,
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254 const DcmTagKey& key)
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255 {
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256 CopyString(target, source, encoding, key, true, true);
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257 }
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258
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259
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260 public:
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261 PImpl() :
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262 fileSetId_("ORTHANC_MEDIA"),
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263 extendedSopClass_(false)
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264 {
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265 }
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266
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267 void EnableExtendedSopClass(bool enable)
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268 {
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269 if (enable)
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270 {
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271 LOG(WARNING) << "Generating a DICOMDIR with type 3 attributes, "
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272 << "which leads to an Extended SOP Class";
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273 }
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274
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275 extendedSopClass_ = enable;
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276 }
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277
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278 bool IsExtendedSopClass() const
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279 {
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280 return extendedSopClass_;
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281 }
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282
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283 void FillPatient(DcmDirectoryRecord& record,
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284 DcmDataset& dicom,
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285 Encoding encoding)
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286 {
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287 // cf. "DicomDirInterface::buildPatientRecord()"
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288
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289 CopyStringType1C(record, dicom, encoding, DCM_PatientID);
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290 CopyStringType2(record, dicom, encoding, DCM_PatientName);
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291 }
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292
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293 void FillStudy(DcmDirectoryRecord& record,
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294 DcmDataset& dicom,
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295 Encoding encoding)
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296 {
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297 // cf. "DicomDirInterface::buildStudyRecord()"
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298
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299 std::string nowDate, nowTime;
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300 SystemToolbox::GetNowDicom(nowDate, nowTime);
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301
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302 std::string studyDate;
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303 if (!GetUtf8TagValue(studyDate, dicom, encoding, DCM_StudyDate) &&
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304 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_SeriesDate) &&
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305 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_AcquisitionDate) &&
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306 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_ContentDate))
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307 {
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308 studyDate = nowDate;
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309 }
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310
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311 std::string studyTime;
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312 if (!GetUtf8TagValue(studyTime, dicom, encoding, DCM_StudyTime) &&
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313 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_SeriesTime) &&
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314 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_AcquisitionTime) &&
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315 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_ContentTime))
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316 {
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317 studyTime = nowTime;
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318 }
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319
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320 /* copy attribute values from dataset to study record */
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321 SetTagValue(record, DCM_StudyDate, studyDate);
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322 SetTagValue(record, DCM_StudyTime, studyTime);
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323 CopyStringType2(record, dicom, encoding, DCM_StudyDescription);
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324 CopyStringType1(record, dicom, encoding, DCM_StudyInstanceUID);
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325 /* use type 1C instead of 1 in order to avoid unwanted overwriting */
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326 CopyStringType1C(record, dicom, encoding, DCM_StudyID);
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327 CopyStringType2(record, dicom, encoding, DCM_AccessionNumber);
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328 }
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329
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330 void FillSeries(DcmDirectoryRecord& record,
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331 DcmDataset& dicom,
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332 Encoding encoding)
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333 {
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334 // cf. "DicomDirInterface::buildSeriesRecord()"
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335
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336 /* copy attribute values from dataset to series record */
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337 CopyStringType1(record, dicom, encoding, DCM_Modality);
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338 CopyStringType1(record, dicom, encoding, DCM_SeriesInstanceUID);
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339 /* use type 1C instead of 1 in order to avoid unwanted overwriting */
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340 CopyStringType1C(record, dicom, encoding, DCM_SeriesNumber);
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341
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342 // Add extended (non-standard) type 3 tags, those are not generated by DCMTK
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343 // http://dicom.nema.org/medical/Dicom/2016a/output/chtml/part02/sect_7.3.html
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344 // https://groups.google.com/d/msg/orthanc-users/Y7LOvZMDeoc/9cp3kDgxAwAJ
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345 if (extendedSopClass_)
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346 {
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347 CopyStringType3(record, dicom, encoding, DCM_SeriesDescription);
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348 }
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349 }
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350
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351 void FillInstance(DcmDirectoryRecord& record,
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352 DcmDataset& dicom,
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353 Encoding encoding,
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354 DcmMetaInfo& metaInfo,
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355 const char* path)
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356 {
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357 // cf. "DicomDirInterface::buildImageRecord()"
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358
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359 /* copy attribute values from dataset to image record */
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360 CopyStringType1(record, dicom, encoding, DCM_InstanceNumber);
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361 //CopyElementType1C(record, dicom, encoding, DCM_ImageType);
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362
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363 // REMOVED since 0.9.7: copyElementType1C(dicom, DCM_ReferencedImageSequence, record);
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364
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365 std::string sopClassUid, sopInstanceUid, transferSyntaxUid;
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366 if (!GetUtf8TagValue(sopClassUid, dicom, encoding, DCM_SOPClassUID) ||
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367 !GetUtf8TagValue(sopInstanceUid, dicom, encoding, DCM_SOPInstanceUID) ||
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368 !GetUtf8TagValue(transferSyntaxUid, metaInfo, encoding, DCM_TransferSyntaxUID))
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369 {
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370 throw OrthancException(ErrorCode_BadFileFormat);
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371 }
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372
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373 SetTagValue(record, DCM_ReferencedFileID, path);
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374 SetTagValue(record, DCM_ReferencedSOPClassUIDInFile, sopClassUid);
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375 SetTagValue(record, DCM_ReferencedSOPInstanceUIDInFile, sopInstanceUid);
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376 SetTagValue(record, DCM_ReferencedTransferSyntaxUIDInFile, transferSyntaxUid);
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377 }
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378
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379
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parents:
diff changeset
380
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 bool CreateResource(DcmDirectoryRecord*& target,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 ResourceType level,
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
383 ParsedDicomFile& dicom,
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 const char* filename,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 const char* path)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 {
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
387 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
388 Encoding encoding = dicom.GetEncoding();
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
390 bool found;
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
391 std::string id;
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 E_DirRecType type;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 switch (level)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 case ResourceType_Patient:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
397 found = GetUtf8TagValue(id, dataset, encoding, DCM_PatientID);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 type = ERT_Patient;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 case ResourceType_Study:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
402 found = GetUtf8TagValue(id, dataset, encoding, DCM_StudyInstanceUID);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 type = ERT_Study;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 case ResourceType_Series:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
407 found = GetUtf8TagValue(id, dataset, encoding, DCM_SeriesInstanceUID);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 type = ERT_Series;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 case ResourceType_Instance:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
412 found = GetUtf8TagValue(id, dataset, encoding, DCM_SOPInstanceUID);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 type = ERT_Image;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 default:
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
420 if (!found)
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 {
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
422 throw OrthancException(ErrorCode_BadFileFormat);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 IndexKey key = std::make_pair(level, std::string(id.c_str()));
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 Index::iterator it = index_.find(key);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 if (it != index_.end())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 target = it->second;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 return false; // Already existing
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 std::auto_ptr<DcmDirectoryRecord> record(new DcmDirectoryRecord(type, NULL, filename));
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 switch (level)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 case ResourceType_Patient:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
439 FillPatient(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 case ResourceType_Study:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
443 FillStudy(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 case ResourceType_Series:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
447 FillSeries(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 case ResourceType_Instance:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
451 FillInstance(*record, dataset, encoding, *dicom.GetDcmtkObject().getMetaInfo(), path);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 default:
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
458 CopyStringType1C(*record, dataset, encoding, DCM_SpecificCharacterSet);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 target = record.get();
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 GetRoot().insertSub(record.release());
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 index_[key] = target;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 return true; // Newly created
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 void Read(std::string& s)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 if (!GetDicomDir().write(DICOMDIR_DEFAULT_TRANSFERSYNTAX,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 EET_UndefinedLength /*encodingType*/,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 EGL_withoutGL /*groupLength*/).good())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 file_.Read(s);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 void SetFileSetId(const std::string& id)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 dir_.reset(NULL);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 fileSetId_ = id;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 };
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 DicomDirWriter::DicomDirWriter() : pimpl_(new PImpl)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 DicomDirWriter::~DicomDirWriter()
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 if (pimpl_)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 delete pimpl_;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 void DicomDirWriter::SetFileSetId(const std::string& id)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 pimpl_->SetFileSetId(id);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 void DicomDirWriter::Add(const std::string& directory,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 const std::string& filename,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 ParsedDicomFile& dicom)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 std::string path;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 if (directory.empty())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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511 path = filename;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
513 else
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
514 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
515 if (directory[directory.length() - 1] == '/' ||
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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516 directory[directory.length() - 1] == '\\')
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
517 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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518 throw OrthancException(ErrorCode_ParameterOutOfRange);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
519 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
521 path = directory + '\\' + filename;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
522 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
524 DcmDirectoryRecord* instance;
1885
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
525 bool isNewInstance = pimpl_->CreateResource(instance, ResourceType_Instance, dicom, filename.c_str(), path.c_str());
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
526 if (isNewInstance)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528 DcmDirectoryRecord* series;
1885
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
529 bool isNewSeries = pimpl_->CreateResource(series, ResourceType_Series, dicom, filename.c_str(), NULL);
1121
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 series->insertSub(instance);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
531
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 if (isNewSeries)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534 DcmDirectoryRecord* study;
1885
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
535 bool isNewStudy = pimpl_->CreateResource(study, ResourceType_Study, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
536 study->insertSub(series);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 if (isNewStudy)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540 DcmDirectoryRecord* patient;
1885
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
541 pimpl_->CreateResource(patient, ResourceType_Patient, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 patient->insertSub(study);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
543 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
544 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548 void DicomDirWriter::Encode(std::string& target)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 pimpl_->Read(target);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 }
2422
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
552
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
553
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
554 void DicomDirWriter::EnableExtendedSopClass(bool enable)
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
555 {
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
556 pimpl_->EnableExtendedSopClass(enable);
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
557 }
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
558
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
559
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
560 bool DicomDirWriter::IsExtendedSopClass() const
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
561 {
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
562 return pimpl_->IsExtendedSopClass();
b340f0a9022c New argument "/.../media?extended" to include additional type-3 tags in DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2421
diff changeset
563 }
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 }