Mercurial > hg > orthanc

annotate Core/DicomParsing/DicomDirWriter.cpp @ 2421:d0fe5ec7eb05

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playing with dicomdir
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sun, 08 Oct 2017 11:13:56 +0200
parents 7284093111b0
children b340f0a9022c
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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36
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37 /*=========================================================================
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38
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39 This file is based on portions of the following project:
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40
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41 Program: DCMTK 3.6.0
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42 Module: http://dicom.offis.de/dcmtk.php.en
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43
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44 Copyright (C) 1994-2011, OFFIS e.V.
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45 All rights reserved.
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46
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47 This software and supporting documentation were developed by
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48
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49 OFFIS e.V.
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50 R&D Division Health
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51 Escherweg 2
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52 26121 Oldenburg, Germany
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53
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54 Redistribution and use in source and binary forms, with or without
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55 modification, are permitted provided that the following conditions
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56 are met:
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57
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58 - Redistributions of source code must retain the above copyright
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59 notice, this list of conditions and the following disclaimer.
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60
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61 - Redistributions in binary form must reproduce the above copyright
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62 notice, this list of conditions and the following disclaimer in the
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63 documentation and/or other materials provided with the distribution.
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64
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65 - Neither the name of OFFIS nor the names of its contributors may be
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66 used to endorse or promote products derived from this software
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67 without specific prior written permission.
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68
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69 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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70 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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71 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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72 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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73 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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74 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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75 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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76 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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77 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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78 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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79 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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80
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81 =========================================================================*/
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82
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84
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85 /***
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86
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87 Validation:
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88
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89 # sudo apt-get install dicom3tools
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90 # dciodvfy DICOMDIR 2>&1 | less
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91 # dcentvfy DICOMDIR 2>&1 | less
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92
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93 http://www.dclunie.com/dicom3tools/dciodvfy.html
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94
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95 DICOMDIR viewer working with Wine under Linux:
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96 http://www.microdicom.com/
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97
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98 ***/
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99
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100
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101 #include "../PrecompiledHeaders.h"
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102 #include "DicomDirWriter.h"
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103
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104 #include "FromDcmtkBridge.h"
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105 #include "ToDcmtkBridge.h"
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106
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107 #include "../Logging.h"
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108 #include "../OrthancException.h"
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109 #include "../TemporaryFile.h"
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110 #include "../Toolbox.h"
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111 #include "../SystemToolbox.h"
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112
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113 #include <dcmtk/dcmdata/dcdicdir.h>
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114 #include <dcmtk/dcmdata/dcmetinf.h>
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115 #include <dcmtk/dcmdata/dcdeftag.h>
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116 #include <dcmtk/dcmdata/dcuid.h>
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117 #include <dcmtk/dcmdata/dcddirif.h>
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118 #include <dcmtk/dcmdata/dcvrui.h>
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119 #include <dcmtk/dcmdata/dcsequen.h>
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120 #include <dcmtk/dcmdata/dcostrmf.h>
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121 #include "dcmtk/dcmdata/dcvrda.h" /* for class DcmDate */
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122 #include "dcmtk/dcmdata/dcvrtm.h" /* for class DcmTime */
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123
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124 #include <memory>
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125
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126 namespace Orthanc
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127 {
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128 class DicomDirWriter::PImpl
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129 {
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130 private:
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131 std::string fileSetId_;
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132 TemporaryFile file_;
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133 std::auto_ptr<DcmDicomDir> dir_;
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134
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135 typedef std::pair<ResourceType, std::string> IndexKey;
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136 typedef std::map<IndexKey, DcmDirectoryRecord* > Index;
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137 Index index_;
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138
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139
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140 DcmDicomDir& GetDicomDir()
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141 {
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142 if (dir_.get() == NULL)
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143 {
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144 dir_.reset(new DcmDicomDir(file_.GetPath().c_str(),
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145 fileSetId_.c_str()));
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146 //SetTagValue(dir_->getRootRecord(), DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(Encoding_Utf8));
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147 }
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148
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149 return *dir_;
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150 }
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151
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152
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153 DcmDirectoryRecord& GetRoot()
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154 {
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155 return GetDicomDir().getRootRecord();
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156 }
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157
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158
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159 static bool GetUtf8TagValue(std::string& result,
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160 DcmItem& source,
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161 Encoding encoding,
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162 const DcmTagKey& key)
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163 {
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164 DcmElement* element = NULL;
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165
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166 if (source.findAndGetElement(key, element).good())
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167 {
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168 char* s = NULL;
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169 if (element->isLeaf() &&
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170 element->getString(s).good() &&
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171 s != NULL)
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172 {
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173 result = Toolbox::ConvertToUtf8(s, encoding);
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174 return true;
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175 }
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176 }
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177
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178 result.clear();
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179 return false;
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180 }
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181
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182
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183 static void SetTagValue(DcmDirectoryRecord& target,
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184 const DcmTagKey& key,
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185 const std::string& valueUtf8)
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186 {
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187 std::string s = Toolbox::ConvertFromUtf8(valueUtf8, Encoding_Ascii);
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188
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189 if (!target.putAndInsertString(key, s.c_str()).good())
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190 {
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191 throw OrthancException(ErrorCode_InternalError);
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192 }
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193 }
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194
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195
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196
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197 static bool CopyString(DcmDirectoryRecord& target,
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198 DcmDataset& source,
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199 Encoding encoding,
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200 const DcmTagKey& key,
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201 bool optional,
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202 bool copyEmpty)
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203 {
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204 if (optional &&
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205 !source.tagExistsWithValue(key) &&
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206 !(copyEmpty && source.tagExists(key)))
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207 {
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208 return false;
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209 }
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210
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211 std::string value;
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212 bool found = GetUtf8TagValue(value, source, encoding, key);
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213
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214 if (!found)
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215 {
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216 // We don't raise an exception if "!optional", even if this
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217 // results in an invalid DICOM file
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218 value.clear();
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219 }
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220
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221 SetTagValue(target, key, value);
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222 return found;
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223 }
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224
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225
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226 static void CopyStringType1(DcmDirectoryRecord& target,
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227 DcmDataset& source,
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228 Encoding encoding,
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229 const DcmTagKey& key)
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230 {
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231 CopyString(target, source, encoding, key, false, false);
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232 }
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233
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234 static void CopyStringType1C(DcmDirectoryRecord& target,
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235 DcmDataset& source,
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236 Encoding encoding,
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237 const DcmTagKey& key)
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238 {
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239 CopyString(target, source, encoding, key, true, false);
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240 }
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241
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242 static void CopyStringType2(DcmDirectoryRecord& target,
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243 DcmDataset& source,
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244 Encoding encoding,
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245 const DcmTagKey& key)
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246 {
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247 CopyString(target, source, encoding, key, false, true);
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248 }
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249
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250 static void CopyStringType3(DcmDirectoryRecord& target,
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251 DcmDataset& source,
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252 Encoding encoding,
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253 const DcmTagKey& key)
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254 {
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255 CopyString(target, source, encoding, key, true, true);
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256 }
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257
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258
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259 public:
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260 PImpl() : fileSetId_("ORTHANC_MEDIA")
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261 {
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262 }
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263
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264 void FillPatient(DcmDirectoryRecord& record,
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265 DcmDataset& dicom,
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266 Encoding encoding)
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267 {
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268 // cf. "DicomDirInterface::buildPatientRecord()"
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269
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270 CopyStringType1C(record, dicom, encoding, DCM_PatientID);
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271 CopyStringType2(record, dicom, encoding, DCM_PatientName);
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272 }
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273
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274 void FillStudy(DcmDirectoryRecord& record,
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275 DcmDataset& dicom,
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276 Encoding encoding)
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277 {
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278 // cf. "DicomDirInterface::buildStudyRecord()"
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279
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280 std::string nowDate, nowTime;
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281 SystemToolbox::GetNowDicom(nowDate, nowTime);
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282
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283 std::string studyDate;
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284 if (!GetUtf8TagValue(studyDate, dicom, encoding, DCM_StudyDate) &&
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285 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_SeriesDate) &&
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286 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_AcquisitionDate) &&
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287 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_ContentDate))
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288 {
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289 studyDate = nowDate;
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290 }
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291
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292 std::string studyTime;
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293 if (!GetUtf8TagValue(studyTime, dicom, encoding, DCM_StudyTime) &&
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294 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_SeriesTime) &&
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295 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_AcquisitionTime) &&
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296 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_ContentTime))
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297 {
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298 studyTime = nowTime;
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299 }
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300
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301 /* copy attribute values from dataset to study record */
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302 SetTagValue(record, DCM_StudyDate, studyDate);
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303 SetTagValue(record, DCM_StudyTime, studyTime);
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304 CopyStringType2(record, dicom, encoding, DCM_StudyDescription);
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305 CopyStringType1(record, dicom, encoding, DCM_StudyInstanceUID);
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306 /* use type 1C instead of 1 in order to avoid unwanted overwriting */
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307 CopyStringType1C(record, dicom, encoding, DCM_StudyID);
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308 CopyStringType2(record, dicom, encoding, DCM_AccessionNumber);
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309 }
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310
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311 void FillSeries(DcmDirectoryRecord& record,
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312 DcmDataset& dicom,
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313 Encoding encoding)
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314 {
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315 // cf. "DicomDirInterface::buildSeriesRecord()"
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316
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317 /* copy attribute values from dataset to series record */
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318 CopyStringType1(record, dicom, encoding, DCM_Modality);
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319 CopyStringType1(record, dicom, encoding, DCM_SeriesInstanceUID);
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320 /* use type 1C instead of 1 in order to avoid unwanted overwriting */
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321 CopyStringType1C(record, dicom, encoding, DCM_SeriesNumber);
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322 }
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323
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324 void FillInstance(DcmDirectoryRecord& record,
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325 DcmDataset& dicom,
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326 Encoding encoding,
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327 DcmMetaInfo& metaInfo,
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328 const char* path)
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329 {
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330 // cf. "DicomDirInterface::buildImageRecord()"
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331
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332 /* copy attribute values from dataset to image record */
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333 CopyStringType1(record, dicom, encoding, DCM_InstanceNumber);
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334 //CopyElementType1C(record, dicom, encoding, DCM_ImageType);
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335
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336 // REMOVED since 0.9.7: copyElementType1C(dicom, DCM_ReferencedImageSequence, record);
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337
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338 std::string sopClassUid, sopInstanceUid, transferSyntaxUid;
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339 if (!GetUtf8TagValue(sopClassUid, dicom, encoding, DCM_SOPClassUID) ||
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340 !GetUtf8TagValue(sopInstanceUid, dicom, encoding, DCM_SOPInstanceUID) ||
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341 !GetUtf8TagValue(transferSyntaxUid, metaInfo, encoding, DCM_TransferSyntaxUID))
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342 {
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343 throw OrthancException(ErrorCode_BadFileFormat);
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344 }
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345
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346 SetTagValue(record, DCM_ReferencedFileID, path);
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347 SetTagValue(record, DCM_ReferencedSOPClassUIDInFile, sopClassUid);
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348 SetTagValue(record, DCM_ReferencedSOPInstanceUIDInFile, sopInstanceUid);
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349 SetTagValue(record, DCM_ReferencedTransferSyntaxUIDInFile, transferSyntaxUid);
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350 }
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351
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352
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353
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354 bool CreateResource(DcmDirectoryRecord*& target,
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355 ResourceType level,
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356 ParsedDicomFile& dicom,
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357 const char* filename,
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358 const char* path)
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359 {
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360 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
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361 Encoding encoding = dicom.GetEncoding();
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362
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363 bool found;
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364 std::string id;
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365 E_DirRecType type;
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366
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367 switch (level)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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368 {
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369 case ResourceType_Patient:
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370 found = GetUtf8TagValue(id, dataset, encoding, DCM_PatientID);
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371 type = ERT_Patient;
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372 break;
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373
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374 case ResourceType_Study:
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375 found = GetUtf8TagValue(id, dataset, encoding, DCM_StudyInstanceUID);
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376 type = ERT_Study;
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377 break;
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378
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379 case ResourceType_Series:
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380 found = GetUtf8TagValue(id, dataset, encoding, DCM_SeriesInstanceUID);
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381 type = ERT_Series;
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382 break;
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383
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384 case ResourceType_Instance:
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385 found = GetUtf8TagValue(id, dataset, encoding, DCM_SOPInstanceUID);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 type = ERT_Image;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 default:
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
393 if (!found)
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 {
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
395 throw OrthancException(ErrorCode_BadFileFormat);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 IndexKey key = std::make_pair(level, std::string(id.c_str()));
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 Index::iterator it = index_.find(key);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 if (it != index_.end())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 target = it->second;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 return false; // Already existing
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 std::auto_ptr<DcmDirectoryRecord> record(new DcmDirectoryRecord(type, NULL, filename));
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 switch (level)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 case ResourceType_Patient:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
412 FillPatient(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 case ResourceType_Study:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
416 FillStudy(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 case ResourceType_Series:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
420 FillSeries(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 case ResourceType_Instance:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
424 FillInstance(*record, dataset, encoding, *dicom.GetDcmtkObject().getMetaInfo(), path);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 default:
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
431 CopyStringType1C(*record, dataset, encoding, DCM_SpecificCharacterSet);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 target = record.get();
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 GetRoot().insertSub(record.release());
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435 index_[key] = target;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 return true; // Newly created
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 void Read(std::string& s)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 if (!GetDicomDir().write(DICOMDIR_DEFAULT_TRANSFERSYNTAX,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 EET_UndefinedLength /*encodingType*/,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444 EGL_withoutGL /*groupLength*/).good())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 file_.Read(s);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 void SetFileSetId(const std::string& id)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 dir_.reset(NULL);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 fileSetId_ = id;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 };
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 DicomDirWriter::DicomDirWriter() : pimpl_(new PImpl)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 DicomDirWriter::~DicomDirWriter()
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 if (pimpl_)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 delete pimpl_;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 void DicomDirWriter::SetFileSetId(const std::string& id)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 pimpl_->SetFileSetId(id);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 void DicomDirWriter::Add(const std::string& directory,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 const std::string& filename,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 ParsedDicomFile& dicom)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 std::string path;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 if (directory.empty())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 path = filename;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 else
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 if (directory[directory.length() - 1] == '/' ||
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 directory[directory.length() - 1] == '\\')
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 throw OrthancException(ErrorCode_ParameterOutOfRange);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 path = directory + '\\' + filename;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 DcmDirectoryRecord* instance;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
498 bool isNewInstance = pimpl_->CreateResource(instance, ResourceType_Instance, dicom, filename.c_str(), path.c_str());
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 if (isNewInstance)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 DcmDirectoryRecord* series;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
502 bool isNewSeries = pimpl_->CreateResource(series, ResourceType_Series, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 series->insertSub(instance);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 if (isNewSeries)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 DcmDirectoryRecord* study;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
508 bool isNewStudy = pimpl_->CreateResource(study, ResourceType_Study, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 study->insertSub(series);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 if (isNewStudy)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 DcmDirectoryRecord* patient;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
514 pimpl_->CreateResource(patient, ResourceType_Patient, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 patient->insertSub(study);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 void DicomDirWriter::Encode(std::string& target)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 pimpl_->Read(target);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 }