Mercurial > hg > orthanc

annotate OrthancServer/DicomDirWriter.cpp @ 2140:aa4b8895cd23

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reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 09 Nov 2016 16:12:47 +0100
parents b1291df2f780
children 5a8840920121
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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35
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36 /*=========================================================================
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37
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38 This file is based on portions of the following project:
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39
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40 Program: DCMTK 3.6.0
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41 Module: http://dicom.offis.de/dcmtk.php.en
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42
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43 Copyright (C) 1994-2011, OFFIS e.V.
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44 All rights reserved.
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45
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46 This software and supporting documentation were developed by
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47
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48 OFFIS e.V.
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49 R&D Division Health
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50 Escherweg 2
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51 26121 Oldenburg, Germany
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52
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53 Redistribution and use in source and binary forms, with or without
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54 modification, are permitted provided that the following conditions
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55 are met:
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56
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57 - Redistributions of source code must retain the above copyright
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58 notice, this list of conditions and the following disclaimer.
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59
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60 - Redistributions in binary form must reproduce the above copyright
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61 notice, this list of conditions and the following disclaimer in the
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62 documentation and/or other materials provided with the distribution.
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63
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64 - Neither the name of OFFIS nor the names of its contributors may be
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65 used to endorse or promote products derived from this software
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66 without specific prior written permission.
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67
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68 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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69 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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70 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
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71 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
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72 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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73 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
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74 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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75 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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76 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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77 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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78 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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79
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80 =========================================================================*/
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81
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84 /***
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85
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86 Validation:
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87
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88 # sudo apt-get install dicom3tools
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89 # dciodvfy DICOMDIR 2>&1 | less
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90 # dcentvfy DICOMDIR 2>&1 | less
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91
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92 http://www.dclunie.com/dicom3tools/dciodvfy.html
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93
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94 DICOMDIR viewer working with Wine under Linux:
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95 http://www.microdicom.com/
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96
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97 ***/
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98
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99
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100 #include "PrecompiledHeadersServer.h"
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101 #include "DicomDirWriter.h"
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102
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103 #include "FromDcmtkBridge.h"
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104 #include "ToDcmtkBridge.h"
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105
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106 #include "../Core/Logging.h"
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107 #include "../Core/OrthancException.h"
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108 #include "../Core/Uuid.h"
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109
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110 #include <dcmtk/dcmdata/dcdicdir.h>
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111 #include <dcmtk/dcmdata/dcmetinf.h>
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112 #include <dcmtk/dcmdata/dcdeftag.h>
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113 #include <dcmtk/dcmdata/dcuid.h>
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114 #include <dcmtk/dcmdata/dcddirif.h>
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115 #include <dcmtk/dcmdata/dcvrui.h>
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116 #include <dcmtk/dcmdata/dcsequen.h>
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117 #include <dcmtk/dcmdata/dcostrmf.h>
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118 #include "dcmtk/dcmdata/dcvrda.h" /* for class DcmDate */
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119 #include "dcmtk/dcmdata/dcvrtm.h" /* for class DcmTime */
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120
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121 #include <memory>
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122
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123 namespace Orthanc
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124 {
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125 class DicomDirWriter::PImpl
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126 {
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127 private:
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128 std::string fileSetId_;
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129 TemporaryFile file_;
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130 std::auto_ptr<DcmDicomDir> dir_;
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131
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132 typedef std::pair<ResourceType, std::string> IndexKey;
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133 typedef std::map<IndexKey, DcmDirectoryRecord* > Index;
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134 Index index_;
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135
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136
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137 DcmDicomDir& GetDicomDir()
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138 {
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139 if (dir_.get() == NULL)
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140 {
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141 dir_.reset(new DcmDicomDir(file_.GetPath().c_str(),
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142 fileSetId_.c_str()));
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143 //SetTagValue(dir_->getRootRecord(), DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(Encoding_Utf8));
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144 }
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145
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146 return *dir_;
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147 }
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148
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149
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150 DcmDirectoryRecord& GetRoot()
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151 {
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152 return GetDicomDir().getRootRecord();
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153 }
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154
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155
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156 static bool GetUtf8TagValue(std::string& result,
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157 DcmItem& source,
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158 Encoding encoding,
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159 const DcmTagKey& key)
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160 {
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161 DcmElement* element = NULL;
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162
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163 if (source.findAndGetElement(key, element).good())
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164 {
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165 char* s = NULL;
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166 if (element->isLeaf() &&
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167 element->getString(s).good() &&
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168 s != NULL)
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169 {
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170 result = Toolbox::ConvertToUtf8(s, encoding);
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171 return true;
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172 }
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173 }
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174
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175 result.clear();
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176 return false;
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177 }
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178
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179
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180 static void SetTagValue(DcmDirectoryRecord& target,
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181 const DcmTagKey& key,
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182 const std::string& valueUtf8)
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183 {
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184 std::string s = Toolbox::ConvertFromUtf8(valueUtf8, Encoding_Ascii);
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185
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186 if (!target.putAndInsertString(key, s.c_str()).good())
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187 {
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188 throw OrthancException(ErrorCode_InternalError);
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189 }
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190 }
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191
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192
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193
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194 static bool CopyString(DcmDirectoryRecord& target,
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195 DcmDataset& source,
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196 Encoding encoding,
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197 const DcmTagKey& key,
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198 bool optional,
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199 bool copyEmpty)
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200 {
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201 if (optional &&
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202 !source.tagExistsWithValue(key) &&
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203 !(copyEmpty && source.tagExists(key)))
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204 {
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205 return false;
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206 }
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207
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208 std::string value;
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209 bool found = GetUtf8TagValue(value, source, encoding, key);
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210
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211 SetTagValue(target, key, value);
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212 return found;
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213 }
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214
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215
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216 static void CopyStringType1(DcmDirectoryRecord& target,
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217 DcmDataset& source,
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218 Encoding encoding,
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219 const DcmTagKey& key)
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220 {
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221 CopyString(target, source, encoding, key, false, false);
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222 }
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223
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224 static void CopyStringType1C(DcmDirectoryRecord& target,
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225 DcmDataset& source,
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226 Encoding encoding,
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227 const DcmTagKey& key)
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228 {
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229 CopyString(target, source, encoding, key, true, false);
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230 }
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231
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232 static void CopyStringType2(DcmDirectoryRecord& target,
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233 DcmDataset& source,
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234 Encoding encoding,
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235 const DcmTagKey& key)
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236 {
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237 CopyString(target, source, encoding, key, false, true);
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238 }
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239
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240
1121
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241 public:
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242 PImpl() : fileSetId_("ORTHANC_MEDIA")
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243 {
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244 }
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245
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246 void FillPatient(DcmDirectoryRecord& record,
1885
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247 DcmDataset& dicom,
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248 Encoding encoding)
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249 {
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250 // cf. "DicomDirInterface::buildPatientRecord()"
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251
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252 CopyStringType1C(record, dicom, encoding, DCM_PatientID);
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253 CopyStringType2(record, dicom, encoding, DCM_PatientName);
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254 }
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255
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256 void FillStudy(DcmDirectoryRecord& record,
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257 DcmDataset& dicom,
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258 Encoding encoding)
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259 {
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260 // cf. "DicomDirInterface::buildStudyRecord()"
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261
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262 std::string nowDate, nowTime;
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263 SystemToolbox::GetNowDicom(nowDate, nowTime);
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264
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265 std::string studyDate;
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266 if (!GetUtf8TagValue(studyDate, dicom, encoding, DCM_StudyDate) &&
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267 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_SeriesDate) &&
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268 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_AcquisitionDate) &&
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269 !GetUtf8TagValue(studyDate, dicom, encoding, DCM_ContentDate))
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270 {
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271 studyDate = nowDate;
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272 }
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273
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274 std::string studyTime;
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275 if (!GetUtf8TagValue(studyTime, dicom, encoding, DCM_StudyTime) &&
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276 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_SeriesTime) &&
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277 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_AcquisitionTime) &&
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278 !GetUtf8TagValue(studyTime, dicom, encoding, DCM_ContentTime))
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279 {
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280 studyTime = nowTime;
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281 }
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282
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283 /* copy attribute values from dataset to study record */
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284 SetTagValue(record, DCM_StudyDate, studyDate);
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285 SetTagValue(record, DCM_StudyTime, studyTime);
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286 CopyStringType2(record, dicom, encoding, DCM_StudyDescription);
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287 CopyStringType1(record, dicom, encoding, DCM_StudyInstanceUID);
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288 /* use type 1C instead of 1 in order to avoid unwanted overwriting */
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289 CopyStringType1C(record, dicom, encoding, DCM_StudyID);
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290 CopyStringType2(record, dicom, encoding, DCM_AccessionNumber);
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291 }
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292
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293 void FillSeries(DcmDirectoryRecord& record,
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294 DcmDataset& dicom,
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295 Encoding encoding)
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296 {
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297 // cf. "DicomDirInterface::buildSeriesRecord()"
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298
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299 /* copy attribute values from dataset to series record */
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300 CopyStringType1(record, dicom, encoding, DCM_Modality);
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301 CopyStringType1(record, dicom, encoding, DCM_SeriesInstanceUID);
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302 /* use type 1C instead of 1 in order to avoid unwanted overwriting */
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303 CopyStringType1C(record, dicom, encoding, DCM_SeriesNumber);
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304 }
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305
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306 void FillInstance(DcmDirectoryRecord& record,
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307 DcmDataset& dicom,
5be57564ffc4 refactoring dicomdir generation
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diff changeset
308 Encoding encoding,
1121
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309 DcmMetaInfo& metaInfo,
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310 const char* path)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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311 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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312 // cf. "DicomDirInterface::buildImageRecord()"
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313
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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314 /* copy attribute values from dataset to image record */
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315 CopyStringType1(record, dicom, encoding, DCM_InstanceNumber);
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316 //CopyElementType1C(record, dicom, encoding, DCM_ImageType);
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317
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318 // REMOVED since 0.9.7: copyElementType1C(dicom, DCM_ReferencedImageSequence, record);
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diff changeset
319
1885
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diff changeset
320 std::string sopClassUid, sopInstanceUid, transferSyntaxUid;
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parents: 1788
diff changeset
321 if (!GetUtf8TagValue(sopClassUid, dicom, encoding, DCM_SOPClassUID) ||
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
322 !GetUtf8TagValue(sopInstanceUid, dicom, encoding, DCM_SOPInstanceUID) ||
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
323 !GetUtf8TagValue(transferSyntaxUid, metaInfo, encoding, DCM_TransferSyntaxUID))
1121
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diff changeset
324 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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325 throw OrthancException(ErrorCode_BadFileFormat);
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parents:
diff changeset
326 }
1885
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diff changeset
327
5be57564ffc4 refactoring dicomdir generation
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diff changeset
328 SetTagValue(record, DCM_ReferencedFileID, path);
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
329 SetTagValue(record, DCM_ReferencedSOPClassUIDInFile, sopClassUid);
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
330 SetTagValue(record, DCM_ReferencedSOPInstanceUIDInFile, sopInstanceUid);
5be57564ffc4 refactoring dicomdir generation
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parents: 1788
diff changeset
331 SetTagValue(record, DCM_ReferencedTransferSyntaxUIDInFile, transferSyntaxUid);
1121
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332 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
336 bool CreateResource(DcmDirectoryRecord*& target,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
337 ResourceType level,
1885
5be57564ffc4 refactoring dicomdir generation
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diff changeset
338 ParsedDicomFile& dicom,
1121
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diff changeset
339 const char* filename,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
340 const char* path)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
341 {
1885
5be57564ffc4 refactoring dicomdir generation
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diff changeset
342 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
5be57564ffc4 refactoring dicomdir generation
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diff changeset
343 Encoding encoding = dicom.GetEncoding();
1121
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diff changeset
344
1885
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diff changeset
345 bool found;
5be57564ffc4 refactoring dicomdir generation
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diff changeset
346 std::string id;
1121
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347 E_DirRecType type;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
348
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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349 switch (level)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
350 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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351 case ResourceType_Patient:
1885
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diff changeset
352 found = GetUtf8TagValue(id, dataset, encoding, DCM_PatientID);
1121
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353 type = ERT_Patient;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
354 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
355
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
356 case ResourceType_Study:
1885
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diff changeset
357 found = GetUtf8TagValue(id, dataset, encoding, DCM_StudyInstanceUID);
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358 type = ERT_Study;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
359 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
360
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
361 case ResourceType_Series:
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diff changeset
362 found = GetUtf8TagValue(id, dataset, encoding, DCM_SeriesInstanceUID);
1121
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diff changeset
363 type = ERT_Series;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
364 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
366 case ResourceType_Instance:
1885
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diff changeset
367 found = GetUtf8TagValue(id, dataset, encoding, DCM_SOPInstanceUID);
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368 type = ERT_Image;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
369 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
370
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 default:
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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372 throw OrthancException(ErrorCode_InternalError);
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parents:
diff changeset
373 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
374
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375 if (!found)
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376 {
1885
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377 throw OrthancException(ErrorCode_BadFileFormat);
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378 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
379
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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diff changeset
380 IndexKey key = std::make_pair(level, std::string(id.c_str()));
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diff changeset
381 Index::iterator it = index_.find(key);
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diff changeset
382
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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383 if (it != index_.end())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
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parents:
diff changeset
384 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 target = it->second;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 return false; // Already existing
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 std::auto_ptr<DcmDirectoryRecord> record(new DcmDirectoryRecord(type, NULL, filename));
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 switch (level)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 case ResourceType_Patient:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
394 FillPatient(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 case ResourceType_Study:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
398 FillStudy(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 case ResourceType_Series:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
402 FillSeries(*record, dataset, encoding);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 case ResourceType_Instance:
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
406 FillInstance(*record, dataset, encoding, *dicom.GetDcmtkObject().getMetaInfo(), path);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 break;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 default:
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
413 CopyStringType1C(*record, dataset, encoding, DCM_SpecificCharacterSet);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 target = record.get();
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 GetRoot().insertSub(record.release());
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 index_[key] = target;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 return true; // Newly created
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 void Read(std::string& s)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 if (!GetDicomDir().write(DICOMDIR_DEFAULT_TRANSFERSYNTAX,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 EET_UndefinedLength /*encodingType*/,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 EGL_withoutGL /*groupLength*/).good())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 throw OrthancException(ErrorCode_InternalError);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 file_.Read(s);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 void SetFileSetId(const std::string& id)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 dir_.reset(NULL);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 fileSetId_ = id;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439 };
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 DicomDirWriter::DicomDirWriter() : pimpl_(new PImpl)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 DicomDirWriter::~DicomDirWriter()
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 if (pimpl_)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 delete pimpl_;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 void DicomDirWriter::SetFileSetId(const std::string& id)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 pimpl_->SetFileSetId(id);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 void DicomDirWriter::Add(const std::string& directory,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 const std::string& filename,
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 ParsedDicomFile& dicom)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 std::string path;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 if (directory.empty())
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 path = filename;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 else
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 if (directory[directory.length() - 1] == '/' ||
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 directory[directory.length() - 1] == '\\')
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 throw OrthancException(ErrorCode_ParameterOutOfRange);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 path = directory + '\\' + filename;
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 DcmDirectoryRecord* instance;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
480 bool isNewInstance = pimpl_->CreateResource(instance, ResourceType_Instance, dicom, filename.c_str(), path.c_str());
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 if (isNewInstance)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 DcmDirectoryRecord* series;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
484 bool isNewSeries = pimpl_->CreateResource(series, ResourceType_Series, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 series->insertSub(instance);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 if (isNewSeries)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 DcmDirectoryRecord* study;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
490 bool isNewStudy = pimpl_->CreateResource(study, ResourceType_Study, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 study->insertSub(series);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 if (isNewStudy)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 DcmDirectoryRecord* patient;
1885
5be57564ffc4 refactoring dicomdir generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
496 pimpl_->CreateResource(patient, ResourceType_Patient, dicom, filename.c_str(), NULL);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 patient->insertSub(study);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 void DicomDirWriter::Encode(std::string& target)
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 {
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 pimpl_->Read(target);
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 }
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }