Mercurial > hg > orthanc
annotate Core/DicomParsing/FromDcmtkBridge.cpp @ 2528:832217e4e872
old warnings turned into info
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 13 Apr 2018 13:11:25 +0200 |
parents | ce2dfba9417c |
children | ea63d9f90377 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
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33 |
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34 #include "../PrecompiledHeaders.h" |
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35 |
71 | 36 #ifndef NOMINMAX |
37 #define NOMINMAX | |
38 #endif | |
0 | 39 |
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40 #if !defined(ORTHANC_SANDBOXED) |
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41 # error The macro ORTHANC_SANDBOXED must be defined |
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42 #endif |
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43 |
0 | 44 #include "FromDcmtkBridge.h" |
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45 #include "ToDcmtkBridge.h" |
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46 #include "../Logging.h" |
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47 #include "../Toolbox.h" |
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48 #include "../OrthancException.h" |
0 | 49 |
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50 #if ORTHANC_SANDBOXED == 0 |
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51 # include "../TemporaryFile.h" |
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52 #endif |
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53 |
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54 #include <list> |
71 | 55 #include <limits> |
56 | |
0 | 57 #include <boost/lexical_cast.hpp> |
1656 | 58 #include <boost/filesystem.hpp> |
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59 #include <boost/algorithm/string/predicate.hpp> |
0 | 60 |
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61 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 62 #include <dcmtk/dcmdata/dcdicent.h> |
63 #include <dcmtk/dcmdata/dcdict.h> | |
64 #include <dcmtk/dcmdata/dcfilefo.h> | |
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65 #include <dcmtk/dcmdata/dcostrmb.h> |
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66 #include <dcmtk/dcmdata/dcpixel.h> |
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67 #include <dcmtk/dcmdata/dcuid.h> |
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68 #include <dcmtk/dcmdata/dcistrmb.h> |
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69 |
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70 #include <dcmtk/dcmdata/dcvrae.h> |
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71 #include <dcmtk/dcmdata/dcvras.h> |
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72 #include <dcmtk/dcmdata/dcvrat.h> |
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73 #include <dcmtk/dcmdata/dcvrcs.h> |
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74 #include <dcmtk/dcmdata/dcvrda.h> |
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75 #include <dcmtk/dcmdata/dcvrds.h> |
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76 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 77 #include <dcmtk/dcmdata/dcvrfd.h> |
78 #include <dcmtk/dcmdata/dcvrfl.h> | |
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79 #include <dcmtk/dcmdata/dcvris.h> |
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80 #include <dcmtk/dcmdata/dcvrlo.h> |
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81 #include <dcmtk/dcmdata/dcvrlt.h> |
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82 #include <dcmtk/dcmdata/dcvrpn.h> |
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83 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 84 #include <dcmtk/dcmdata/dcvrsl.h> |
85 #include <dcmtk/dcmdata/dcvrss.h> | |
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86 #include <dcmtk/dcmdata/dcvrst.h> |
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87 #include <dcmtk/dcmdata/dcvrtm.h> |
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88 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 89 #include <dcmtk/dcmdata/dcvrul.h> |
90 #include <dcmtk/dcmdata/dcvrus.h> | |
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91 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 92 |
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93 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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94 # include <EmbeddedResources.h> |
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95 #endif |
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96 |
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97 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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98 # include <dcmtk/dcmjpeg/djdecode.h> |
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99 #endif |
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100 |
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101 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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102 # include <dcmtk/dcmjpls/djdecode.h> |
1930 | 103 #endif |
104 | |
105 | |
62 | 106 namespace Orthanc |
0 | 107 { |
285
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108 static inline uint16_t GetCharValue(char c) |
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109 { |
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110 if (c >= '0' && c <= '9') |
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111 return c - '0'; |
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112 else if (c >= 'a' && c <= 'f') |
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113 return c - 'a' + 10; |
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114 else if (c >= 'A' && c <= 'F') |
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115 return c - 'A' + 10; |
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116 else |
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117 return 0; |
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118 } |
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119 |
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120 static inline uint16_t GetTagValue(const char* c) |
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121 { |
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122 return ((GetCharValue(c[0]) << 12) + |
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123 (GetCharValue(c[1]) << 8) + |
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124 (GetCharValue(c[2]) << 4) + |
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125 GetCharValue(c[3])); |
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126 } |
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127 |
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128 |
1656 | 129 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
130 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
131 EmbeddedResources::FileResourceId resource) | |
132 { | |
2017 | 133 std::string content; |
134 EmbeddedResources::GetFileResource(content, resource); | |
1656 | 135 |
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136 #if ORTHANC_SANDBOXED == 0 |
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137 TemporaryFile tmp; |
2017 | 138 tmp.Write(content); |
1656 | 139 |
140 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
141 { | |
2017 | 142 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that " |
143 << "your TEMP directory does not contain special characters."; | |
1656 | 144 throw OrthancException(ErrorCode_InternalError); |
145 } | |
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146 #else |
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147 if (!dictionary.loadFromMemory(content)) |
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148 { |
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149 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that " |
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150 << "your TEMP directory does not contain special characters."; |
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151 throw OrthancException(ErrorCode_InternalError); |
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152 } |
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153 #endif |
1656 | 154 } |
155 | |
156 #else | |
157 static void LoadExternalDictionary(DcmDataDictionary& dictionary, | |
158 const std::string& directory, | |
159 const std::string& filename) | |
160 { | |
161 boost::filesystem::path p = directory; | |
162 p = p / filename; | |
163 | |
164 LOG(WARNING) << "Loading the external DICOM dictionary " << p; | |
165 | |
166 if (!dictionary.loadDictionary(p.string().c_str())) | |
167 { | |
168 throw OrthancException(ErrorCode_InternalError); | |
169 } | |
170 } | |
171 #endif | |
172 | |
173 | |
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174 namespace |
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175 { |
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176 class DictionaryLocker |
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177 { |
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178 private: |
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179 DcmDataDictionary& dictionary_; |
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180 |
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181 public: |
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182 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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183 { |
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184 } |
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185 |
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186 ~DictionaryLocker() |
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187 { |
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188 dcmDataDict.unlock(); |
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189 } |
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190 |
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191 DcmDataDictionary& operator*() |
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192 { |
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193 return dictionary_; |
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194 } |
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195 |
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196 DcmDataDictionary* operator->() |
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197 { |
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198 return &dictionary_; |
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199 } |
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200 }; |
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201 } |
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202 |
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203 |
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204 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 205 { |
2296 | 206 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER; |
207 | |
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208 { |
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209 DictionaryLocker locker; |
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210 |
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211 locker->clear(); |
1656 | 212 |
213 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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214 LOG(INFO) << "Loading the embedded dictionaries"; |
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215 /** |
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216 * Do not load DICONDE dictionary, it breaks the other tags. The |
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217 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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218 * dictionary is not loaded by storescu. |
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219 **/ |
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220 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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222 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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223 |
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224 if (loadPrivateDictionary) |
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225 { |
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226 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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227 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
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228 } |
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229 else |
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230 { |
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231 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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232 } |
1656 | 233 |
2364 | 234 #elif defined(__linux__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) || defined(__OpenBSD__) |
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235 std::string path = DCMTK_DICTIONARY_DIR; |
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237 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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238 if (env != NULL) |
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239 { |
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240 path = std::string(env); |
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241 } |
1656 | 242 |
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243 LoadExternalDictionary(*locker, path, "dicom.dic"); |
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244 |
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245 if (loadPrivateDictionary) |
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246 { |
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247 LoadExternalDictionary(*locker, path, "private.dic"); |
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248 } |
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249 else |
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250 { |
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251 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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252 } |
1656 | 253 |
254 #else | |
255 #error Support your platform here | |
256 #endif | |
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257 } |
1656 | 258 |
259 /* make sure data dictionary is loaded */ | |
260 if (!dcmDataDict.isDictionaryLoaded()) | |
261 { | |
262 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE; | |
263 throw OrthancException(ErrorCode_InternalError); | |
264 } | |
265 | |
266 { | |
267 // Test the dictionary with a simple DICOM tag | |
268 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
269 if (key.getEVR() != EVR_DS) | |
270 { | |
271 LOG(ERROR) << "The DICOM dictionary has not been correctly read"; | |
272 throw OrthancException(ErrorCode_InternalError); | |
273 } | |
274 } | |
275 } | |
276 | |
277 | |
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278 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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279 ValueRepresentation vr, |
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280 const std::string& name, |
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281 unsigned int minMultiplicity, |
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282 unsigned int maxMultiplicity, |
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283 const std::string& privateCreator) |
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284 { |
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285 if (minMultiplicity < 1) |
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286 { |
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287 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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288 } |
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289 |
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290 bool arbitrary = false; |
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291 if (maxMultiplicity == 0) |
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292 { |
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293 maxMultiplicity = DcmVariableVM; |
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294 arbitrary = true; |
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295 } |
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296 else if (maxMultiplicity < minMultiplicity) |
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297 { |
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298 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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299 } |
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300 |
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301 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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302 |
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303 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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304 << name << " (multiplicity: " << minMultiplicity << "-" |
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305 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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306 |
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307 std::auto_ptr<DcmDictEntry> entry; |
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308 if (privateCreator.empty()) |
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309 { |
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310 if (tag.GetGroup() % 2 == 1) |
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311 { |
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312 char buf[128]; |
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313 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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314 "but no private creator was associated with it", |
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315 tag.GetGroup(), tag.GetElement()); |
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316 LOG(WARNING) << buf; |
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317 } |
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318 |
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319 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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320 tag.GetElement(), |
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321 evr, name.c_str(), |
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322 static_cast<int>(minMultiplicity), |
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323 static_cast<int>(maxMultiplicity), |
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324 NULL /* version */, |
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325 OFTrue /* doCopyString */, |
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326 NULL /* private creator */)); |
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327 } |
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328 else |
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329 { |
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330 // "Private Data Elements have an odd Group Number that is not |
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331 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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332 // (FFFF,eeee)." |
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333 if (tag.GetGroup() % 2 == 0 /* even */ || |
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334 tag.GetGroup() == 0x0001 || |
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335 tag.GetGroup() == 0x0003 || |
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336 tag.GetGroup() == 0x0005 || |
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337 tag.GetGroup() == 0x0007 || |
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338 tag.GetGroup() == 0xffff) |
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339 { |
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340 char buf[128]; |
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341 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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342 tag.GetGroup(), tag.GetElement()); |
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343 LOG(ERROR) << buf; |
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344 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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345 } |
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346 |
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347 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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348 tag.GetElement(), |
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349 evr, name.c_str(), |
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350 static_cast<int>(minMultiplicity), |
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351 static_cast<int>(maxMultiplicity), |
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352 "private" /* version */, |
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353 OFTrue /* doCopyString */, |
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354 privateCreator.c_str())); |
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355 } |
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356 |
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357 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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358 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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359 |
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360 { |
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361 DictionaryLocker locker; |
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362 |
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363 if (locker->findEntry(name.c_str())) |
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364 { |
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365 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\""; |
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366 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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367 } |
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368 |
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369 locker->addEntry(entry.release()); |
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370 } |
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371 } |
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372 |
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373 |
1936 | 374 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset, |
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375 Encoding defaultEncoding) |
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376 { |
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377 Encoding encoding = defaultEncoding; |
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378 |
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379 OFString tmp; |
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380 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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381 { |
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382 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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383 |
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384 if (characterSet.empty()) |
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385 { |
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386 // Empty specific character set tag: Use the default encoding |
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388 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
1087 | 389 { |
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390 // The specific character set is supported by the Orthanc core |
1087 | 391 } |
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392 else |
1087 | 393 { |
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394 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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395 << ", fallback to ASCII (remove all special characters)"; |
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396 encoding = Encoding_Ascii; |
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397 } |
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398 } |
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399 else |
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400 { |
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401 // No specific character set tag: Use the default encoding |
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402 } |
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403 |
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404 return encoding; |
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405 } |
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406 |
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407 |
2125 | 408 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
409 DcmItem& dataset, | |
410 unsigned int maxStringLength, | |
411 Encoding defaultEncoding) | |
0 | 412 { |
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413 std::set<DicomTag> ignoreTagLength; |
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414 |
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415 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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416 |
0 | 417 target.Clear(); |
418 for (unsigned long i = 0; i < dataset.card(); i++) | |
419 { | |
420 DcmElement* element = dataset.getElement(i); | |
421 if (element && element->isLeaf()) | |
422 { | |
423 target.SetValue(element->getTag().getGTag(), | |
424 element->getTag().getETag(), | |
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425 ConvertLeafElement(*element, DicomToJsonFlags_Default, |
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426 maxStringLength, encoding, ignoreTagLength)); |
0 | 427 } |
428 } | |
429 } | |
430 | |
431 | |
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432 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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433 { |
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434 return DicomTag(tag.getGTag(), tag.getETag()); |
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435 } |
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436 |
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437 |
0 | 438 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
439 { | |
440 return DicomTag(element.getGTag(), element.getETag()); | |
441 } | |
442 | |
443 | |
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444 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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445 DicomToJsonFlags flags, |
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446 unsigned int maxStringLength, |
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447 Encoding encoding, |
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448 const std::set<DicomTag>& ignoreTagLength) |
0 | 449 { |
450 if (!element.isLeaf()) | |
451 { | |
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452 // This function is only applicable to leaf elements |
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453 throw OrthancException(ErrorCode_BadParameterType); |
0 | 454 } |
455 | |
1818
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456 char *c = NULL; |
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457 if (element.isaString() && |
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458 element.getString(c).good()) |
0 | 459 { |
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460 if (c == NULL) // This case corresponds to the empty string |
0 | 461 { |
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462 return new DicomValue("", false); |
0 | 463 } |
464 else | |
465 { | |
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466 std::string s(c); |
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467 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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468 |
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469 if (maxStringLength != 0 && |
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470 utf8.size() > maxStringLength && |
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471 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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472 { |
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473 return new DicomValue; // Too long, create a NULL value |
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474 } |
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475 else |
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476 { |
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477 return new DicomValue(utf8, false); |
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478 } |
0 | 479 } |
480 } | |
481 | |
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482 |
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483 if (element.getVR() == EVR_UN) |
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484 { |
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485 // Unknown value representation: Lookup in the dictionary. This |
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486 // is notably the case for private tags registered with the |
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487 // "Dictionary" configuration option. |
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488 DictionaryLocker locker; |
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489 |
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490 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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491 element.getTag().getPrivateCreator()); |
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492 if (entry != NULL && |
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493 entry->getVR().isaString()) |
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494 { |
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495 Uint8* data = NULL; |
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496 |
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497 // At (*), we do not try and convert to UTF-8, as nothing says |
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498 // the encoding of the private tag is the same as that of the |
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499 // remaining of the DICOM dataset. Only go for ASCII strings. |
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500 |
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501 if (element.getUint8Array(data) == EC_Normal && |
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502 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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503 { |
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504 if (data == NULL) |
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505 { |
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506 return new DicomValue("", false); // Empty string |
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507 } |
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|
508 else if (maxStringLength != 0 && |
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|
509 element.getLength() > maxStringLength && |
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|
510 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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511 { |
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|
512 return new DicomValue; // Too long, create a NULL value |
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513 } |
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514 else |
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515 { |
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516 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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517 return new DicomValue(s, false); |
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518 } |
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|
519 } |
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520 } |
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|
521 } |
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changeset
|
522 |
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|
523 |
0 | 524 try |
525 { | |
526 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
527 switch (element.getVR()) | |
528 { | |
529 | |
530 /** | |
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|
531 * Deal with binary data (including PixelData). |
0 | 532 **/ |
306
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diff
changeset
|
533 |
302
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diff
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|
534 case EVR_OB: // other byte |
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|
535 case EVR_OF: // other float |
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536 case EVR_OW: // other word |
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|
537 case EVR_UN: // unknown value representation |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
538 case EVR_ox: // OB or OW depending on context |
306
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diff
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|
539 case EVR_DS: // decimal string |
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diff
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|
540 case EVR_IS: // integer string |
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541 case EVR_AS: // age string |
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|
542 case EVR_DA: // date string |
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|
543 case EVR_DT: // date time string |
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diff
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|
544 case EVR_TM: // time string |
302
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|
545 case EVR_AE: // application entity title |
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|
546 case EVR_CS: // code string |
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547 case EVR_SH: // short string |
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|
548 case EVR_LO: // long string |
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|
549 case EVR_ST: // short text |
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|
550 case EVR_LT: // long text |
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|
551 case EVR_UT: // unlimited text |
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diff
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|
552 case EVR_PN: // person name |
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diff
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|
553 case EVR_UI: // unique identifier |
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diff
changeset
|
554 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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ParsedDicomFile::CreateFromJson
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|
555 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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|
556 { |
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|
557 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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|
558 { |
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|
559 Uint8* data = NULL; |
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ParsedDicomFile::CreateFromJson
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|
560 if (element.getUint8Array(data) == EC_Normal) |
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|
561 { |
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|
562 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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|
563 } |
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changeset
|
564 } |
0 | 565 |
1818
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|
566 return new DicomValue; |
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|
567 } |
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|
568 |
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|
569 /** |
2115
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Handling of private tags/creators in the "Dictionary" configuration option
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diff
changeset
|
570 * Numeric types |
1818
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|
571 **/ |
0 | 572 |
302
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|
573 case EVR_SL: // signed long |
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diff
changeset
|
574 { |
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diff
changeset
|
575 Sint32 f; |
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diff
changeset
|
576 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
1737
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removal of DicomStringValue and DicomNullValue
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1736
diff
changeset
|
577 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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|
578 else |
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579 return new DicomValue; |
302
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580 } |
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581 |
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582 case EVR_SS: // signed short |
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583 { |
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584 Sint16 f; |
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585 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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586 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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587 else |
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588 return new DicomValue; |
302
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589 } |
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590 |
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591 case EVR_UL: // unsigned long |
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592 { |
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593 Uint32 f; |
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594 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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595 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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596 else |
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597 return new DicomValue; |
302
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598 } |
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599 |
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600 case EVR_US: // unsigned short |
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601 { |
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602 Uint16 f; |
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603 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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604 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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605 else |
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606 return new DicomValue; |
302
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607 } |
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608 |
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609 case EVR_FL: // float single-precision |
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610 { |
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611 Float32 f; |
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612 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
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613 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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614 else |
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615 return new DicomValue; |
302
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616 } |
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617 |
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618 case EVR_FD: // float double-precision |
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619 { |
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620 Float64 f; |
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621 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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622 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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623 else |
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624 return new DicomValue; |
1131 | 625 } |
626 | |
627 | |
628 /** | |
629 * Attribute tag. | |
630 **/ | |
631 | |
632 case EVR_AT: | |
633 { | |
1147 | 634 DcmTagKey tag; |
635 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
636 { | |
637 DicomTag t(tag.getGroup(), tag.getElement()); | |
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638 return new DicomValue(t.Format(), false); |
1147 | 639 } |
1131 | 640 else |
1147 | 641 { |
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642 return new DicomValue; |
1147 | 643 } |
302
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644 } |
0 | 645 |
646 | |
647 /** | |
302
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648 * Sequence types, should never occur at this point because of |
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649 * "element.isLeaf()". |
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650 **/ |
0 | 651 |
302
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652 case EVR_SQ: // sequence of items |
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653 return new DicomValue; |
0 | 654 |
655 | |
302
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656 /** |
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657 * Internal to DCMTK. |
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658 **/ |
0 | 659 |
302
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660 case EVR_xs: // SS or US depending on context |
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661 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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662 case EVR_na: // na="not applicable", for data which has no VR |
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663 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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664 case EVR_item: // used internally for items |
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665 case EVR_metainfo: // used internally for meta info datasets |
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666 case EVR_dataset: // used internally for datasets |
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667 case EVR_fileFormat: // used internally for DICOM files |
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668 case EVR_dicomDir: // used internally for DICOMDIR objects |
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669 case EVR_dirRecord: // used internally for DICOMDIR records |
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670 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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671 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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672 case EVR_PixelData: // used internally for uncompressed pixeld data |
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673 case EVR_OverlayData: // used internally for overlay data |
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674 return new DicomValue; |
0 | 675 |
676 | |
302
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677 /** |
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678 * Default case. |
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679 **/ |
0 | 680 |
302
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681 default: |
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682 return new DicomValue; |
0 | 683 } |
684 } | |
2499
83b8b6743531
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|
685 catch (boost::bad_lexical_cast&) |
0 | 686 { |
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687 return new DicomValue; |
0 | 688 } |
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|
689 catch (std::bad_cast&) |
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690 { |
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691 return new DicomValue; |
306
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692 } |
0 | 693 } |
694 | |
695 | |
1687 | 696 static Json::Value& PrepareNode(Json::Value& parent, |
697 DcmElement& element, | |
698 DicomToJsonFormat format) | |
0 | 699 { |
1687 | 700 assert(parent.type() == Json::objectValue); |
0 | 701 |
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702 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
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703 const std::string formattedTag = tag.Format(); |
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704 |
1688
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705 if (format == DicomToJsonFormat_Short) |
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|
706 { |
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|
707 parent[formattedTag] = Json::nullValue; |
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708 return parent[formattedTag]; |
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709 } |
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|
710 |
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|
711 // This code gives access to the name of the private tags |
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
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diff
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|
712 std::string tagName = FromDcmtkBridge::GetTagName(element); |
1688
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|
713 |
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|
714 switch (format) |
0 | 715 { |
1860
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diff
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|
716 case DicomToJsonFormat_Human: |
1688
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717 parent[tagName] = Json::nullValue; |
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718 return parent[tagName]; |
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|
719 |
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|
720 case DicomToJsonFormat_Full: |
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|
721 { |
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722 parent[formattedTag] = Json::objectValue; |
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723 Json::Value& node = parent[formattedTag]; |
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724 |
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725 if (element.isLeaf()) |
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726 { |
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|
727 node["Name"] = tagName; |
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|
728 |
2076 | 729 if (element.getTag().getPrivateCreator() != NULL) |
1688
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diff
changeset
|
730 { |
2076 | 731 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
732 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
733 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
734 return node; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
735 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
736 else |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
737 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
738 node["Name"] = tagName; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
739 node["Type"] = "Sequence"; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
740 node["Value"] = Json::nullValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
741 return node["Value"]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
742 } |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
743 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
744 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
745 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
746 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 747 } |
748 } | |
749 | |
750 | |
751 static void LeafValueToJson(Json::Value& target, | |
752 const DicomValue& value, | |
753 DicomToJsonFormat format, | |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
754 DicomToJsonFlags flags, |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
755 unsigned int maxStringLength) |
1687 | 756 { |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
757 Json::Value* targetValue = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
758 Json::Value* targetType = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
759 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
760 switch (format) |
1687 | 761 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
762 case DicomToJsonFormat_Short: |
1860
c7d70f659190
DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1854
diff
changeset
|
763 case DicomToJsonFormat_Human: |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
764 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
765 assert(target.type() == Json::nullValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
766 targetValue = ⌖ |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
767 break; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
768 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
769 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
770 case DicomToJsonFormat_Full: |
0 | 771 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
772 assert(target.type() == Json::objectValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
773 target["Value"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
774 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
775 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
776 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
777 break; |
0 | 778 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
779 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
780 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
781 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 782 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
783 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
784 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
785 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
786 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
787 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
788 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
789 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
790 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
791 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
792 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
793 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
794 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
795 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
796 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
797 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
798 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
799 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
800 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
801 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
802 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
803 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
804 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
805 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
806 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
807 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
808 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
809 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
810 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
811 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
812 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
813 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
814 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
815 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
816 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
817 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
818 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
819 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
820 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
821 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
822 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
823 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
824 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
825 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
826 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
827 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
828 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
829 } |
1687 | 830 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
831 |
1687 | 832 |
2126 | 833 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
834 DcmElement& element, | |
835 DicomToJsonFormat format, | |
836 DicomToJsonFlags flags, | |
837 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
838 Encoding encoding, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
839 const std::set<DicomTag>& ignoreTagLength) |
1687 | 840 { |
1691 | 841 if (parent.type() == Json::nullValue) |
842 { | |
843 parent = Json::objectValue; | |
844 } | |
845 | |
846 assert(parent.type() == Json::objectValue); | |
1687 | 847 Json::Value& target = PrepareNode(parent, element, format); |
848 | |
849 if (element.isLeaf()) | |
850 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
851 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
852 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
853 (element, flags, 0, encoding, ignoreTagLength)); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
854 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
855 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
856 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
857 LeafValueToJson(target, *v, format, flags, maxStringLength); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
858 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
859 else |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
860 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
861 LeafValueToJson(target, *v, format, flags, 0); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
862 } |
0 | 863 } |
864 else | |
865 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
866 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
867 target = Json::arrayValue; |
0 | 868 |
869 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
870 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 871 // etc. are not." The following dynamic_cast is thus OK. |
0 | 872 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
873 | |
874 for (unsigned long i = 0; i < sequence.card(); i++) | |
875 { | |
876 DcmItem* child = sequence.getItem(i); | |
1687 | 877 Json::Value& v = target.append(Json::objectValue); |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
878 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, ignoreTagLength); |
1687 | 879 } |
0 | 880 } |
881 } | |
882 | |
883 | |
2126 | 884 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
885 DcmItem& item, | |
886 DicomToJsonFormat format, | |
887 DicomToJsonFlags flags, | |
888 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
889 Encoding encoding, |
e4045b3c9772
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890 const std::set<DicomTag>& ignoreTagLength) |
1686 | 891 { |
1688
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892 assert(parent.type() == Json::objectValue); |
1686 | 893 |
894 for (unsigned long i = 0; i < item.card(); i++) | |
895 { | |
896 DcmElement* element = item.getElement(i); | |
1735
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897 if (element == NULL) |
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898 { |
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|
899 throw OrthancException(ErrorCode_InternalError); |
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900 } |
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|
901 |
1818
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ParsedDicomFile::CreateFromJson
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902 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
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|
903 |
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|
904 /*element->getTag().isPrivate()*/ |
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905 if (tag.IsPrivate() && |
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906 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
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|
907 { |
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908 continue; |
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909 } |
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910 |
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911 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
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912 { |
1736
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913 DictionaryLocker locker; |
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914 if (locker->findEntry(element->getTag(), NULL) == NULL) |
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|
915 { |
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|
916 continue; |
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917 } |
1735
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918 } |
1736
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919 |
1739
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920 DcmEVR evr = element->getTag().getEVR(); |
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921 if (evr == EVR_OB || |
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922 evr == EVR_OF || |
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|
923 evr == EVR_OW || |
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924 evr == EVR_UN || |
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925 evr == EVR_ox) |
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|
926 { |
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927 // This is a binary tag |
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928 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
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929 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
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|
930 { |
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|
931 continue; |
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|
932 } |
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|
933 } |
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|
934 |
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935 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, |
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936 maxStringLength, encoding, ignoreTagLength); |
1686 | 937 } |
938 } | |
939 | |
940 | |
2126 | 941 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
942 DcmDataset& dataset, | |
943 DicomToJsonFormat format, | |
944 DicomToJsonFlags flags, | |
2131 | 945 unsigned int maxStringLength, |
2409
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946 Encoding defaultEncoding, |
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947 const std::set<DicomTag>& ignoreTagLength) |
0 | 948 { |
2131 | 949 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
2126 | 950 |
1688
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951 target = Json::objectValue; |
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952 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, ignoreTagLength); |
0 | 953 } |
954 | |
955 | |
2126 | 956 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
957 DcmMetaInfo& dataset, | |
958 DicomToJsonFormat format, | |
959 DicomToJsonFlags flags, | |
960 unsigned int maxStringLength) | |
1831
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961 { |
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962 std::set<DicomTag> ignoreTagLength; |
1831
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963 target = Json::objectValue; |
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964 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, ignoreTagLength); |
1831
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|
965 } |
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966 |
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967 |
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968 |
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969 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 970 { |
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971 { |
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972 // Some patches for important tags because of different DICOM |
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973 // dictionaries between DCMTK versions |
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974 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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975 std::string n = tmp.GetMainTagsName(); |
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976 if (n.size() != 0) |
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977 { |
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978 return n; |
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979 } |
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980 // End of patches |
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981 } |
106 | 982 |
305
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983 #if 0 |
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984 // This version explicitly calls the dictionary |
0 | 985 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
986 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
987 | |
306
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988 std::string s(DcmTag_ERROR_TagName); |
0 | 989 if (entry != NULL) |
990 { | |
991 s = std::string(entry->getTagName()); | |
992 } | |
993 | |
994 dcmDataDict.unlock(); | |
995 return s; | |
305
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996 #else |
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997 const char* name = tag.getTagName(); |
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998 if (name == NULL) |
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999 { |
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1000 return DcmTag_ERROR_TagName; |
305
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1001 } |
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1002 else |
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1003 { |
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1004 return std::string(name); |
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1005 } |
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1006 #endif |
0 | 1007 } |
1008 | |
1009 | |
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1010 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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1011 const std::string& privateCreator) |
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1012 { |
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1013 DcmTag tag(t.GetGroup(), t.GetElement()); |
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1014 |
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1015 if (!privateCreator.empty()) |
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1016 { |
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1017 tag.setPrivateCreator(privateCreator.c_str()); |
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1018 } |
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1019 |
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1020 return GetTagNameInternal(tag); |
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1021 } |
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1022 |
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1023 |
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1024 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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1025 { |
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1026 // Copy the tag to ensure const-correctness of DcmElement. Note |
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1027 // that the private creator information is also copied. |
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1028 DcmTag tag(element.getTag()); |
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1029 |
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1030 return GetTagNameInternal(tag); |
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1031 } |
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1032 |
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1033 |
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1034 |
304 | 1035 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 1036 { |
304 | 1037 if (strlen(name) == 9 && |
1038 isxdigit(name[0]) && | |
1039 isxdigit(name[1]) && | |
1040 isxdigit(name[2]) && | |
1041 isxdigit(name[3]) && | |
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1042 (name[4] == '-' || name[4] == ',') && |
304 | 1043 isxdigit(name[5]) && |
1044 isxdigit(name[6]) && | |
1045 isxdigit(name[7]) && | |
1046 isxdigit(name[8])) | |
1047 { | |
1048 uint16_t group = GetTagValue(name); | |
1049 uint16_t element = GetTagValue(name + 5); | |
1050 return DicomTag(group, element); | |
1051 } | |
1052 | |
1861
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1053 if (strlen(name) == 8 && |
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1054 isxdigit(name[0]) && |
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1055 isxdigit(name[1]) && |
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1056 isxdigit(name[2]) && |
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1057 isxdigit(name[3]) && |
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1058 isxdigit(name[4]) && |
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1059 isxdigit(name[5]) && |
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1060 isxdigit(name[6]) && |
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1061 isxdigit(name[7])) |
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1062 { |
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1063 uint16_t group = GetTagValue(name); |
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1064 uint16_t element = GetTagValue(name + 4); |
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1065 return DicomTag(group, element); |
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1066 } |
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1067 |
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1068 #if 0 |
0 | 1069 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1070 const DcmDictEntry* entry = dict.findEntry(name); | |
1071 | |
1072 if (entry == NULL) | |
1073 { | |
1074 dcmDataDict.unlock(); | |
1582
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1075 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1076 } |
1077 else | |
1078 { | |
1079 DcmTagKey key = entry->getKey(); | |
1080 DicomTag tag(key.getGroup(), key.getElement()); | |
1081 dcmDataDict.unlock(); | |
1082 return tag; | |
1083 } | |
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1084 #else |
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1085 DcmTag tag; |
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1086 if (DcmTag::findTagFromName(name, tag).good()) |
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1087 { |
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1088 return DicomTag(tag.getGTag(), tag.getETag()); |
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1089 } |
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1090 else |
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1091 { |
2470 | 1092 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\""; |
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1093 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1094 } |
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1095 #endif |
0 | 1096 } |
1097 | |
1098 | |
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1099 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1100 { |
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1101 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1102 return tmp.isUnknownVR(); |
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1103 } |
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1104 |
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1105 |
0 | 1106 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1107 const DicomMap& values, |
1108 bool simplify) | |
0 | 1109 { |
1110 if (result.type() != Json::objectValue) | |
1111 { | |
62 | 1112 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1113 } |
1114 | |
1115 result.clear(); | |
1116 | |
1117 for (DicomMap::Map::const_iterator | |
656 | 1118 it = values.map_.begin(); it != values.map_.end(); ++it) |
0 | 1119 { |
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1120 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1121 const std::string tagName = GetTagName(it->first, ""); |
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1122 |
1368 | 1123 if (simplify) |
1124 { | |
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1125 if (it->second->IsNull()) |
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1126 { |
2115
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1127 result[tagName] = Json::nullValue; |
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1128 } |
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1129 else |
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1130 { |
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1131 // TODO IsBinary |
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1132 result[tagName] = it->second->GetContent(); |
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1133 } |
1368 | 1134 } |
1135 else | |
1136 { | |
1137 Json::Value value = Json::objectValue; | |
1138 | |
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1139 value["Name"] = tagName; |
1368 | 1140 |
1141 if (it->second->IsNull()) | |
1142 { | |
1143 value["Type"] = "Null"; | |
1144 value["Value"] = Json::nullValue; | |
1145 } | |
1146 else | |
1147 { | |
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1148 // TODO IsBinary |
1368 | 1149 value["Type"] = "String"; |
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1150 value["Value"] = it->second->GetContent(); |
1368 | 1151 } |
1152 | |
1153 result[it->first.Format()] = value; | |
1154 } | |
0 | 1155 } |
1156 } | |
176 | 1157 |
1158 | |
788 | 1159 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1160 { |
1161 char uid[100]; | |
1162 | |
1163 switch (level) | |
1164 { | |
788 | 1165 case ResourceType_Patient: |
311 | 1166 // The "PatientID" field is of type LO (Long String), 64 |
1167 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1168 // as a random PatientID. | |
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1169 return Toolbox::GenerateUuid(); |
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1170 |
788 | 1171 case ResourceType_Instance: |
302
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1172 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1173 |
788 | 1174 case ResourceType_Series: |
302
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1175 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1176 |
788 | 1177 case ResourceType_Study: |
302
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1178 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1179 |
302
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1180 default: |
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1181 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1182 } |
1183 } | |
1184 | |
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1185 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
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1186 DcmDataset& dataSet) |
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1187 { |
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1188 // Determine the transfer syntax which shall be used to write the |
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1189 // information to the file. We always switch to the Little Endian |
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1190 // syntax, with explicit length. |
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1191 |
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1192 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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1193 |
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1194 |
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1195 /** |
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1196 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1197 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1198 * dataset into memory. We now keep the original transfer syntax |
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1199 * (if available). |
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1200 **/ |
1004
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1201 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
661
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1202 if (xfer == EXS_Unknown) |
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1203 { |
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1204 // No information about the original transfer syntax: This is |
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1205 // most probably a DICOM dataset that was read from memory. |
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1206 xfer = EXS_LittleEndianExplicit; |
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1207 } |
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1208 |
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1209 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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1210 |
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1211 // Create the meta-header information |
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1212 DcmFileFormat ff(&dataSet); |
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1213 ff.validateMetaInfo(xfer); |
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1214 ff.removeInvalidGroups(); |
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1215 |
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1216 // Create a memory buffer with the proper size |
1876
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truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1217 { |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1218 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*) |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1219 buffer.resize(estimatedSize); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1220 } |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1221 |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1222 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1223 |
661
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1224 // Fill the memory buffer with the meta-header and the dataset |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1225 ff.transferInit(); |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1226 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1227 /*opt_groupLength*/ EGL_recalcGL, |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1228 /*opt_paddingType*/ EPD_withoutPadding); |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1229 ff.transferEnd(); |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1230 |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1231 if (c.good()) |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1232 { |
1876
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1233 // The DICOM file is successfully written, truncate the target |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1234 // buffer if its size was overestimated by (*) |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1235 ob.flush(); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1236 |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1237 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1238 if (effectiveSize < buffer.size()) |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1239 { |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1240 buffer.resize(effectiveSize); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1241 } |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1242 |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1243 return true; |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1244 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1245 else |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1246 { |
1876
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1247 // Error |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1248 buffer.clear(); |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1249 return false; |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1250 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1251 } |
1360 | 1252 |
1253 | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1254 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1255 { |
1256 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1257 return Convert(t.getEVR()); |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1258 } |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1259 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1260 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1261 { |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1262 switch (vr) |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1263 { |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1264 case EVR_AE: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1265 return ValueRepresentation_ApplicationEntity; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1266 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1267 case EVR_AS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1268 return ValueRepresentation_AgeString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1269 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1270 case EVR_AT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1271 return ValueRepresentation_AttributeTag; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1272 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1273 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1274 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1275 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1276 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1277 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1278 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1279 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1280 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1281 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1282 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1283 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1284 |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1285 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1286 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1287 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1288 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1289 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1290 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1291 case EVR_IS: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1292 return ValueRepresentation_IntegerString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1293 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1294 case EVR_LO: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1295 return ValueRepresentation_LongString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1296 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1297 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1298 return ValueRepresentation_LongText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1299 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1300 case EVR_OB: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1301 return ValueRepresentation_OtherByte; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1302 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1303 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1304 /*case EVR_OD: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1305 return ValueRepresentation_OtherDouble;*/ |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1306 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1307 case EVR_OF: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1308 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1309 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1310 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1311 /*case EVR_OL: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1312 return ValueRepresentation_OtherLong;*/ |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1313 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1314 case EVR_OW: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1315 return ValueRepresentation_OtherWord; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1316 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1317 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1318 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1319 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1320 case EVR_SH: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1321 return ValueRepresentation_ShortString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1322 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1323 case EVR_SL: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1324 return ValueRepresentation_SignedLong; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1325 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1326 case EVR_SQ: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1327 return ValueRepresentation_Sequence; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1328 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1329 case EVR_SS: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1330 return ValueRepresentation_SignedShort; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1331 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1332 case EVR_ST: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1333 return ValueRepresentation_ShortText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1334 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1335 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1336 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1337 |
2006
6301bbcbcaed
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parents:
1998
diff
changeset
|
1338 // Not supported as of DCMTK 3.6.0 |
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1339 /*case EVR_UC: |
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1340 return ValueRepresentation_UnlimitedCharacters;*/ |
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1341 |
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1342 case EVR_UI: |
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1343 return ValueRepresentation_UniqueIdentifier; |
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1344 |
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1345 case EVR_UL: |
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1346 return ValueRepresentation_UnsignedLong; |
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1347 |
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1348 case EVR_UN: |
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1349 return ValueRepresentation_Unknown; |
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1350 |
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1351 // Not supported as of DCMTK 3.6.0 |
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1352 /*case EVR_UR: |
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1353 return ValueRepresentation_UniversalResource;*/ |
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1354 |
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1355 case EVR_US: |
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1356 return ValueRepresentation_UnsignedShort; |
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1357 |
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1358 case EVR_UT: |
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1359 return ValueRepresentation_UnlimitedText; |
1792 | 1360 |
1417
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1361 default: |
2006
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1362 return ValueRepresentation_NotSupported; |
1417
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1363 } |
1360 | 1364 } |
1365 | |
1689 | 1366 |
1693
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1367 static bool IsBinaryTag(const DcmTag& key) |
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1368 { |
1818
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1369 return (key.isUnknownVR() || |
1739
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1370 key.getEVR() == EVR_OB || |
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1371 key.getEVR() == EVR_OF || |
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1372 key.getEVR() == EVR_OW || |
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1373 key.getEVR() == EVR_UN || |
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1374 key.getEVR() == EVR_ox); |
1693
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1375 } |
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1376 |
1689 | 1377 |
1378 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag) | |
1379 { | |
1380 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1381 | |
1818
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1382 if (tag.IsPrivate() || |
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|
1383 IsBinaryTag(key)) |
1693
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1384 { |
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1385 return new DcmOtherByteOtherWord(key); |
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1386 } |
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1387 |
1689 | 1388 switch (key.getEVR()) |
1389 { | |
1390 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1391 | |
1392 /** | |
1739
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|
1393 * Binary types, handled above |
1689 | 1394 **/ |
1395 | |
1396 case EVR_OB: // other byte | |
1397 case EVR_OF: // other float | |
1398 case EVR_OW: // other word | |
1399 case EVR_UN: // unknown value representation | |
1739
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1400 case EVR_ox: // OB or OW depending on context |
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|
1401 throw OrthancException(ErrorCode_InternalError); |
1689 | 1402 |
1403 | |
1404 /** | |
1405 * String types. | |
1406 * http://support.dcmtk.org/docs/classDcmByteString.html | |
1407 **/ | |
1408 | |
1409 case EVR_AS: // age string | |
1410 return new DcmAgeString(key); | |
1411 | |
1412 case EVR_AE: // application entity title | |
1413 return new DcmApplicationEntity(key); | |
1414 | |
1415 case EVR_CS: // code string | |
1416 return new DcmCodeString(key); | |
1417 | |
1418 case EVR_DA: // date string | |
1419 return new DcmDate(key); | |
1420 | |
1421 case EVR_DT: // date time string | |
1422 return new DcmDateTime(key); | |
1423 | |
1424 case EVR_DS: // decimal string | |
1425 return new DcmDecimalString(key); | |
1426 | |
1427 case EVR_IS: // integer string | |
1428 return new DcmIntegerString(key); | |
1429 | |
1430 case EVR_TM: // time string | |
1431 return new DcmTime(key); | |
1432 | |
1433 case EVR_UI: // unique identifier | |
1434 return new DcmUniqueIdentifier(key); | |
1435 | |
1436 case EVR_ST: // short text | |
1437 return new DcmShortText(key); | |
1438 | |
1439 case EVR_LO: // long string | |
1440 return new DcmLongString(key); | |
1441 | |
1442 case EVR_LT: // long text | |
1443 return new DcmLongText(key); | |
1444 | |
1445 case EVR_UT: // unlimited text | |
1446 return new DcmUnlimitedText(key); | |
1447 | |
1448 case EVR_SH: // short string | |
1449 return new DcmShortString(key); | |
1450 | |
1451 case EVR_PN: // person name | |
1452 return new DcmPersonName(key); | |
1453 | |
1454 | |
1455 /** | |
1456 * Numerical types | |
1457 **/ | |
1458 | |
1459 case EVR_SL: // signed long | |
1460 return new DcmSignedLong(key); | |
1461 | |
1462 case EVR_SS: // signed short | |
1463 return new DcmSignedShort(key); | |
1464 | |
1465 case EVR_UL: // unsigned long | |
1466 return new DcmUnsignedLong(key); | |
1467 | |
1468 case EVR_US: // unsigned short | |
1469 return new DcmUnsignedShort(key); | |
1470 | |
1471 case EVR_FL: // float single-precision | |
1472 return new DcmFloatingPointSingle(key); | |
1473 | |
1474 case EVR_FD: // float double-precision | |
1475 return new DcmFloatingPointDouble(key); | |
1476 | |
1477 | |
1478 /** | |
1479 * Sequence types, should never occur at this point. | |
1480 **/ | |
1481 | |
1482 case EVR_SQ: // sequence of items | |
1483 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1484 | |
1485 | |
1486 /** | |
1739
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1487 * TODO |
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1488 **/ |
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1489 |
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|
1490 case EVR_AT: // attribute tag |
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|
1491 throw OrthancException(ErrorCode_NotImplemented); |
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1492 |
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|
1493 |
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|
1494 /** |
1689 | 1495 * Internal to DCMTK. |
1496 **/ | |
1497 | |
1498 case EVR_xs: // SS or US depending on context | |
1499 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1500 case EVR_na: // na="not applicable", for data which has no VR | |
1501 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1502 case EVR_item: // used internally for items | |
1503 case EVR_metainfo: // used internally for meta info datasets | |
1504 case EVR_dataset: // used internally for datasets | |
1505 case EVR_fileFormat: // used internally for DICOM files | |
1506 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1507 case EVR_dirRecord: // used internally for DICOMDIR records | |
1508 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1509 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1510 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1511 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1512 case EVR_OverlayData: // used internally for overlay data | |
1513 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1514 default: | |
1515 break; | |
1516 } | |
1517 | |
1518 throw OrthancException(ErrorCode_InternalError); | |
1519 } | |
1520 | |
1521 | |
1522 | |
1523 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1524 const DicomTag& tag, | |
1695 | 1525 const std::string& utf8Value, |
1818
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|
1526 bool decodeDataUriScheme, |
1695 | 1527 Encoding dicomEncoding) |
1689 | 1528 { |
1529 std::string binary; | |
1695 | 1530 const std::string* decoded = &utf8Value; |
1689 | 1531 |
1818
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1532 if (decodeDataUriScheme && |
1695 | 1533 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
1689 | 1534 { |
1535 std::string mime; | |
1981
4b545a8b1f95
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1536 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
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1537 { |
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diff
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|
1538 throw OrthancException(ErrorCode_BadFileFormat); |
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1539 } |
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1540 |
1695 | 1541 decoded = &binary; |
1542 } | |
1543 else if (dicomEncoding != Encoding_Utf8) | |
1544 { | |
1545 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1546 decoded = &binary; |
1547 } | |
1548 | |
1693
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1549 DcmTag key(tag.GetGroup(), tag.GetElement()); |
1689 | 1550 |
1818
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1551 if (tag.IsPrivate() || |
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|
1552 IsBinaryTag(key)) |
1689 | 1553 { |
1554 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good()) | |
1555 { | |
1556 return; | |
1557 } | |
1558 else | |
1559 { | |
1560 throw OrthancException(ErrorCode_InternalError); | |
1561 } | |
1562 } | |
1563 | |
1564 bool ok = false; | |
1565 | |
1566 try | |
1567 { | |
1568 switch (key.getEVR()) | |
1569 { | |
1570 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1571 | |
1572 /** | |
1573 * TODO. | |
1574 **/ | |
1575 | |
1576 case EVR_OB: // other byte | |
1577 case EVR_OF: // other float | |
1578 case EVR_OW: // other word | |
1579 case EVR_AT: // attribute tag | |
1580 throw OrthancException(ErrorCode_NotImplemented); | |
1581 | |
1582 case EVR_UN: // unknown value representation | |
1583 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1584 | |
1585 | |
1586 /** | |
1587 * String types. | |
1588 **/ | |
1589 | |
1590 case EVR_DS: // decimal string | |
1591 case EVR_IS: // integer string | |
1592 case EVR_AS: // age string | |
1593 case EVR_DA: // date string | |
1594 case EVR_DT: // date time string | |
1595 case EVR_TM: // time string | |
1596 case EVR_AE: // application entity title | |
1597 case EVR_CS: // code string | |
1598 case EVR_SH: // short string | |
1599 case EVR_LO: // long string | |
1600 case EVR_ST: // short text | |
1601 case EVR_LT: // long text | |
1602 case EVR_UT: // unlimited text | |
1603 case EVR_PN: // person name | |
1604 case EVR_UI: // unique identifier | |
1605 { | |
1606 ok = element.putString(decoded->c_str()).good(); | |
1607 break; | |
1608 } | |
1609 | |
1610 | |
1611 /** | |
1612 * Numerical types | |
1613 **/ | |
1614 | |
1615 case EVR_SL: // signed long | |
1616 { | |
1617 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1618 break; | |
1619 } | |
1620 | |
1621 case EVR_SS: // signed short | |
1622 { | |
1623 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1624 break; | |
1625 } | |
1626 | |
1627 case EVR_UL: // unsigned long | |
1628 { | |
1629 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1630 break; | |
1631 } | |
1632 | |
1633 case EVR_US: // unsigned short | |
1634 { | |
1635 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1636 break; | |
1637 } | |
1638 | |
1639 case EVR_FL: // float single-precision | |
1640 { | |
1641 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1642 break; | |
1643 } | |
1644 | |
1645 case EVR_FD: // float double-precision | |
1646 { | |
1647 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1648 break; | |
1649 } | |
1650 | |
1651 | |
1652 /** | |
1653 * Sequence types, should never occur at this point. | |
1654 **/ | |
1655 | |
1656 case EVR_SQ: // sequence of items | |
1657 { | |
1658 ok = false; | |
1659 break; | |
1660 } | |
1661 | |
1662 | |
1663 /** | |
1664 * Internal to DCMTK. | |
1665 **/ | |
1666 | |
1667 case EVR_ox: // OB or OW depending on context | |
1668 case EVR_xs: // SS or US depending on context | |
1669 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1670 case EVR_na: // na="not applicable", for data which has no VR | |
1671 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1672 case EVR_item: // used internally for items | |
1673 case EVR_metainfo: // used internally for meta info datasets | |
1674 case EVR_dataset: // used internally for datasets | |
1675 case EVR_fileFormat: // used internally for DICOM files | |
1676 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1677 case EVR_dirRecord: // used internally for DICOMDIR records | |
1678 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1679 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1680 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1681 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1682 case EVR_OverlayData: // used internally for overlay data | |
1683 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1684 default: | |
1685 break; | |
1686 } | |
1687 } | |
1688 catch (boost::bad_lexical_cast&) | |
1689 { | |
1690 ok = false; | |
1691 } | |
1692 | |
1693 if (!ok) | |
1694 { | |
2216
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1695 LOG(ERROR) << "While creating a DICOM instance, tag (" << tag.Format() |
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1696 << ") has out-of-range value: \"" << *decoded << "\""; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1697 throw OrthancException(ErrorCode_BadFileFormat); |
1689 | 1698 } |
1699 } | |
1700 | |
1701 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1702 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1703 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1704 bool decodeDataUriScheme, |
1695 | 1705 Encoding dicomEncoding) |
1689 | 1706 { |
1707 std::auto_ptr<DcmElement> element; | |
1708 | |
1690 | 1709 switch (value.type()) |
1689 | 1710 { |
1690 | 1711 case Json::stringValue: |
1712 element.reset(CreateElementForTag(tag)); | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1713 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1714 break; |
1715 | |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1716 case Json::nullValue: |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1717 element.reset(CreateElementForTag(tag)); |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1718 FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding); |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1719 break; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1720 |
1690 | 1721 case Json::arrayValue: |
1722 { | |
1723 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1724 if (key.getEVR() != EVR_SQ) | |
1725 { | |
1726 throw OrthancException(ErrorCode_BadParameterType); | |
1727 } | |
1728 | |
2287
9f3414878c02
Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2275
diff
changeset
|
1729 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key); |
1690 | 1730 element.reset(sequence); |
1731 | |
1732 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1733 { | |
1734 std::auto_ptr<DcmItem> item(new DcmItem); | |
1735 | |
1736 Json::Value::Members members = value[i].getMemberNames(); | |
1737 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1738 { | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1739 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding)); |
1690 | 1740 } |
1741 | |
1742 sequence->append(item.release()); | |
1743 } | |
1744 | |
1745 break; | |
1746 } | |
1747 | |
1748 default: | |
1749 throw OrthancException(ErrorCode_BadParameterType); | |
1689 | 1750 } |
1751 | |
1752 return element.release(); | |
1753 } | |
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1754 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1755 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1756 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1757 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1758 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1759 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1760 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1761 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1762 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1763 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1764 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1765 DcmPixelSequence* pixelSequence = NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1766 if (!pixelData.getEncapsulatedRepresentation |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1767 (dataset.getOriginalXfer(), NULL, pixelSequence).good()) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1768 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1769 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1770 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1771 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1772 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1773 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1774 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1775 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1776 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1777 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1778 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1779 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1780 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1781 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1782 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1783 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1784 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1785 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1786 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1787 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1788 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1789 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1790 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1791 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1792 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1793 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1794 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1795 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1796 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1797 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1798 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1799 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1800 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1801 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1802 throw OrthancException(ErrorCode_BadRequest); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1803 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1804 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1805 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1806 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1807 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1808 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1812 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1813 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1815 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1816 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1817 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1818 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1819 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1820 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1821 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1822 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1823 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1824 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1825 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1826 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1827 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1828 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1829 bool decodeDataUriScheme, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 std::auto_ptr<DcmDataset> result(new DcmDataset); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1848 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1849 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1850 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1851 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1852 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1853 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1854 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1855 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1856 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1857 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1858 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1859 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1860 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1861 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1862 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1863 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1864 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1865 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1866 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1867 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1868 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1869 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1870 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1871 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1872 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1873 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1874 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1875 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1876 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1877 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1878 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1879 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1880 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1881 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1882 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1883 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1884 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1885 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1886 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1887 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1888 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1889 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1890 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1891 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1892 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1893 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1894 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1895 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1896 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1897 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1898 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1899 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1900 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1901 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1902 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1903 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1904 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1905 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1906 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1907 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1908 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1909 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1910 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1911 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1912 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1913 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1914 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1915 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1916 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1917 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1918 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1919 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1920 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1921 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1922 result->transferInit(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1923 if (!result->read(is).good()) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1924 { |
2431
14537babc1e6
print error if unable to parse DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1925 LOG(ERROR) << "Cannot parse an invalid DICOM file (size: " << size << " bytes)"; |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1926 throw OrthancException(ErrorCode_BadFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1927 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1928 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1929 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1930 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1931 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1932 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1933 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1934 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1935 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1936 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1937 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1938 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1939 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1940 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1941 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1942 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1943 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1944 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1945 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1946 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1947 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1948 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1949 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1950 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1951 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1952 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1953 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1954 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1955 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1956 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1957 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1958 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1959 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1960 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1961 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1962 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1963 Encoding source, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1964 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1965 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1966 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1967 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1968 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1969 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1970 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1971 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1972 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1973 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1974 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1975 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1976 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1977 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1978 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1979 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1980 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1981 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1982 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1983 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1984 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1985 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1986 std::string a = Toolbox::ConvertToUtf8(c, source); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1987 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1988 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1989 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1990 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1991 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1992 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1993 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1994 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1995 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1996 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1997 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1998 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1999 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2000 ChangeStringEncoding(*sequence.getItem(j), source, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2001 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2002 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2003 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2004 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2005 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2006 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2007 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2008 bool FromDcmtkBridge::LookupTransferSyntax(std::string& result, |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2009 DcmFileFormat& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2010 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2011 const char* value = NULL; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2012 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2013 if (dicom.getMetaInfo() != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2014 dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2015 value != NULL) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2016 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2017 result.assign(value); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2018 return true; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2019 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2020 else |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2021 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2022 return false; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2023 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2024 } |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2025 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2026 |
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
2027 #if ORTHANC_ENABLE_LUA == 1 |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2028 void FromDcmtkBridge::ExecuteToDicom(DicomMap& target, |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2029 LuaFunctionCall& call) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2030 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2031 Json::Value output; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2032 call.ExecuteToJson(output, true /* keep strings */); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2033 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2034 target.Clear(); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2035 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2036 if (output.type() == Json::arrayValue && |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2037 output.size() == 0) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2038 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2039 // This case happens for empty tables |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2040 return; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2041 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2042 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2043 if (output.type() != Json::objectValue) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2044 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2045 LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table"; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2046 throw OrthancException(ErrorCode_LuaBadOutput); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2047 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2048 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2049 Json::Value::Members members = output.getMemberNames(); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2050 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2051 for (size_t i = 0; i < members.size(); i++) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2052 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2053 if (output[members[i]].type() != Json::stringValue) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2054 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2055 LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table mapping names of DICOM tags to strings"; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2056 throw OrthancException(ErrorCode_LuaBadOutput); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2057 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2058 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2059 DicomTag tag(ParseTag(members[i])); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2060 target.SetValue(tag, output[members[i]].asString(), false); |
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dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
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2061 } |
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2062 } |
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
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2063 #endif |
2381
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2064 |
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2065 |
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2066 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
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2067 DcmItem& dataset) |
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2068 { |
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2069 ExtractDicomSummary(target, dataset, |
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2070 ORTHANC_MAXIMUM_TAG_LENGTH, |
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2071 GetDefaultDicomEncoding()); |
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2072 } |
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2073 |
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2074 |
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2075 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
2409
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2076 DcmDataset& dataset, |
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2077 const std::set<DicomTag>& ignoreTagLength) |
2381
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2078 { |
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2079 ExtractDicomAsJson(target, dataset, |
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2080 DicomToJsonFormat_Full, |
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2081 DicomToJsonFlags_Default, |
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2082 ORTHANC_MAXIMUM_TAG_LENGTH, |
2409
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2083 GetDefaultDicomEncoding(), |
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2084 ignoreTagLength); |
2381
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2085 } |
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2086 |
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2087 |
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2088 void FromDcmtkBridge::InitializeCodecs() |
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2089 { |
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2090 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
2528
832217e4e872
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2091 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK"; |
2381
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2092 DJLSDecoderRegistration::registerCodecs(); |
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2093 #endif |
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2094 |
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2095 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
2528
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|
2096 LOG(INFO) << "Registering JPEG codecs in DCMTK"; |
2381
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2097 DJDecoderRegistration::registerCodecs(); |
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2098 #endif |
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2099 } |
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2100 |
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2101 |
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2102 void FromDcmtkBridge::FinalizeCodecs() |
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2103 { |
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2104 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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2105 // Unregister JPEG-LS codecs |
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2106 DJLSDecoderRegistration::cleanup(); |
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2107 #endif |
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2108 |
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2109 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2110 // Unregister JPEG codecs |
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2111 DJDecoderRegistration::cleanup(); |
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2112 #endif |
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2113 } |
2499
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2114 |
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|
2115 |
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2116 |
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2117 // Forward declaration |
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2118 static void ApplyVisitorToElement(DcmElement& element, |
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2119 ITagVisitor& visitor, |
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2120 const std::vector<DicomTag>& parentTags, |
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2121 const std::vector<size_t>& parentIndexes, |
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2122 Encoding encoding); |
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2123 |
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|
2124 static void ApplyVisitorToDataset(DcmItem& dataset, |
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2125 ITagVisitor& visitor, |
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2126 const std::vector<DicomTag>& parentTags, |
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2127 const std::vector<size_t>& parentIndexes, |
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2128 Encoding encoding) |
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|
2129 { |
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|
2130 assert(parentTags.size() == parentIndexes.size()); |
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2131 |
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2132 for (unsigned long i = 0; i < dataset.card(); i++) |
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2133 { |
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2134 DcmElement* element = dataset.getElement(i); |
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2135 if (element == NULL) |
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2136 { |
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2137 throw OrthancException(ErrorCode_InternalError); |
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2138 } |
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2139 else |
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2140 { |
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2141 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding); |
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2142 } |
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2143 } |
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2144 } |
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2145 |
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2146 |
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2147 static void ApplyVisitorToLeaf(DcmElement& element, |
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2148 ITagVisitor& visitor, |
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2149 const std::vector<DicomTag>& parentTags, |
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2150 const std::vector<size_t>& parentIndexes, |
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2151 const DicomTag& tag, |
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2152 Encoding encoding) |
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2153 { |
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2154 // TODO - Merge this function with ConvertLeafElement() |
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2155 |
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2156 assert(element.isLeaf()); |
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2157 |
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2158 DcmEVR evr = element.getTag().getEVR(); |
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2159 ValueRepresentation vr = FromDcmtkBridge::Convert(evr); |
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2160 |
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2161 char *c = NULL; |
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2162 if (element.isaString() && |
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2163 element.getString(c).good()) |
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2164 { |
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2165 std::string utf8; |
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2166 |
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2167 if (c != NULL) // This case corresponds to the empty string |
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2168 { |
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2169 std::string s(c); |
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2170 utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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2171 } |
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diff
changeset
|
2172 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2173 std::string newValue; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2174 ITagVisitor::Action action = visitor.VisitString |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2175 (newValue, parentTags, parentIndexes, tag, vr, utf8); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2176 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2177 switch (action) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2178 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2179 case ITagVisitor::Action_None: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2180 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2181 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2182 case ITagVisitor::Action_Replace: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2183 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2184 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding); |
2522
ce2dfba9417c
fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2513
diff
changeset
|
2185 if (element.putString(s.c_str()) != EC_Normal) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2186 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2187 LOG(ERROR) << "Cannot replace value of tag: " << tag.Format(); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2188 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2189 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2190 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2191 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2192 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2193 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2194 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2195 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2196 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2197 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2198 return; // We're done |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2199 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2200 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2201 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2202 try |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2203 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2204 // http://support.dcmtk.org/docs/dcvr_8h-source.html |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2205 switch (element.getVR()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2206 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2207 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2208 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2209 * Deal with binary data (including PixelData). |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2210 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2211 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2212 case EVR_OB: // other byte |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2213 case EVR_OF: // other float |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2214 case EVR_OW: // other word |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2215 case EVR_UN: // unknown value representation |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2216 case EVR_ox: // OB or OW depending on context |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2217 case EVR_DS: // decimal string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2218 case EVR_IS: // integer string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2219 case EVR_AS: // age string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2220 case EVR_DA: // date string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2221 case EVR_DT: // date time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2222 case EVR_TM: // time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2223 case EVR_AE: // application entity title |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2224 case EVR_CS: // code string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2225 case EVR_SH: // short string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2226 case EVR_LO: // long string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2227 case EVR_ST: // short text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2228 case EVR_LT: // long text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2229 case EVR_UT: // unlimited text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2230 case EVR_PN: // person name |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2231 case EVR_UI: // unique identifier |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2232 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2233 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2234 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2235 Uint8* data = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2236 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2237 if (element.getUint8Array(data) == EC_Normal) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2238 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2239 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength()); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2240 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2241 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2242 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2243 visitor.VisitUnknown(parentTags, parentIndexes, tag, vr); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2244 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2245 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2246 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2247 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2248 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2249 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2250 * Numeric types |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2251 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2252 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2253 case EVR_SL: // signed long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2254 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2255 Sint32 f; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2256 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2257 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2258 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2259 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2260 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2261 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2262 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2263 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2264 case EVR_SS: // signed short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2265 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2266 Sint16 f; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2267 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2268 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2269 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2270 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2271 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2272 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2273 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2274 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2275 case EVR_UL: // unsigned long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2276 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2277 Uint32 f; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2278 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2279 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2280 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2281 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2282 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2283 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2284 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2285 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2286 case EVR_US: // unsigned short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2287 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2288 Uint16 f; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2289 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2290 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2291 visitor.VisitInteger(parentTags, parentIndexes, tag, vr, f); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2292 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2293 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2294 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2295 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2296 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2297 case EVR_FL: // float single-precision |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2298 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2299 Float32 f; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2300 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2301 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2302 visitor.VisitDouble(parentTags, parentIndexes, tag, vr, f); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2303 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2304 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2305 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2306 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2307 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2308 case EVR_FD: // float double-precision |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2309 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2310 Float64 f; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2311 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2312 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2313 visitor.VisitDouble(parentTags, parentIndexes, tag, vr, f); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2314 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2315 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2316 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2317 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2318 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2319 |
83b8b6743531
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2320 /** |
83b8b6743531
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2321 * Attribute tag. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2322 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2323 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2324 case EVR_AT: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2325 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2326 DcmTagKey tagKey; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2327 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tagKey, 0).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2328 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2329 DicomTag t(tagKey.getGroup(), tagKey.getElement()); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2330 visitor.VisitAttribute(parentTags, parentIndexes, tag, vr, t); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2331 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2332 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2333 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2334 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2335 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2336 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2337 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2338 * Sequence types, should never occur at this point because of |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2339 * "element.isLeaf()". |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2340 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2341 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2342 case EVR_SQ: // sequence of items |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2343 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2344 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2345 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2346 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2347 * Internal to DCMTK. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2348 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2349 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2350 case EVR_xs: // SS or US depending on context |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2351 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2352 case EVR_na: // na="not applicable", for data which has no VR |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2353 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2354 case EVR_item: // used internally for items |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2355 case EVR_metainfo: // used internally for meta info datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2356 case EVR_dataset: // used internally for datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2357 case EVR_fileFormat: // used internally for DICOM files |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2358 case EVR_dicomDir: // used internally for DICOMDIR objects |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2359 case EVR_dirRecord: // used internally for DICOMDIR records |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2360 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2361 case EVR_pixelItem: // used internally for pixel items in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2362 case EVR_PixelData: // used internally for uncompressed pixeld data |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2363 case EVR_OverlayData: // used internally for overlay data |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2364 visitor.VisitUnknown(parentTags, parentIndexes, tag, vr); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2365 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2366 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2367 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2368 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2369 * Default case. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2370 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2371 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2372 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2373 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2374 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2375 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2376 catch (boost::bad_lexical_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2377 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2378 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2379 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2380 catch (std::bad_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2381 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2382 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2383 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2384 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2385 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2386 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2387 static void ApplyVisitorToElement(DcmElement& element, |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2388 ITagVisitor& visitor, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2389 const std::vector<DicomTag>& parentTags, |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2390 const std::vector<size_t>& parentIndexes, |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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changeset
|
2391 Encoding encoding) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2392 { |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2393 assert(parentTags.size() == parentIndexes.size()); |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2394 |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2395 DicomTag tag(FromDcmtkBridge::Convert(element.getTag())); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2396 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2397 if (element.isLeaf()) |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2398 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2399 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2400 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2401 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2402 { |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2403 // "All subclasses of DcmElement except for DcmSequenceOfItems |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2404 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
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2405 // etc. are not." The following dynamic_cast is thus OK. |
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2406 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
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2407 |
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2408 std::vector<DicomTag> tags = parentTags; |
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2409 std::vector<size_t> indexes = parentIndexes; |
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2410 tags.push_back(tag); |
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2411 indexes.push_back(0); |
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2412 |
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2413 for (unsigned long i = 0; i < sequence.card(); i++) |
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2414 { |
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2415 indexes.back() = static_cast<size_t>(i); |
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2416 DcmItem* child = sequence.getItem(i); |
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2417 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding); |
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2418 } |
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2419 } |
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2420 } |
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2421 |
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2422 |
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2423 void FromDcmtkBridge::Apply(DcmItem& dataset, |
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2424 ITagVisitor& visitor, |
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2425 Encoding defaultEncoding) |
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2426 { |
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2427 std::vector<DicomTag> parentTags; |
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2428 std::vector<size_t> parentIndexes; |
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2429 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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2430 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding); |
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2431 } |
0 | 2432 } |