Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.cpp @ 5311:79fa77e9fa0d am-experimental
merge default -> am-experimental
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Fri, 16 Jun 2023 09:26:33 +0200 |
| parents | 9504de20d43d |
| children |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 790 | 7 * |
| 8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
| 790 | 12 * |
| 13 * This program is distributed in the hope that it will be useful, but | |
| 14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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16 * Lesser General Public License for more details. |
| 790 | 17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
| 790 | 21 **/ |
| 22 | |
| 23 | |
| 24 | |
| 25 /*========================================================================= | |
| 26 | |
| 27 This file is based on portions of the following project: | |
| 28 | |
| 29 Program: GDCM (Grassroots DICOM). A DICOM library | |
| 30 Module: http://gdcm.sourceforge.net/Copyright.html | |
| 31 | |
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32 Copyright (c) 2006-2011 Mathieu Malaterre |
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33 Copyright (c) 1993-2005 CREATIS |
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34 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) |
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35 All rights reserved. |
| 790 | 36 |
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37 Redistribution and use in source and binary forms, with or without |
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38 modification, are permitted provided that the following conditions are met: |
| 790 | 39 |
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40 * Redistributions of source code must retain the above copyright notice, |
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41 this list of conditions and the following disclaimer. |
| 790 | 42 |
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43 * Redistributions in binary form must reproduce the above copyright notice, |
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44 this list of conditions and the following disclaimer in the documentation |
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45 and/or other materials provided with the distribution. |
| 790 | 46 |
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47 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any |
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48 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to |
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49 endorse or promote products derived from this software without specific |
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50 prior written permission. |
| 790 | 51 |
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52 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' |
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53 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
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54 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE |
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55 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR |
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56 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
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57 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
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58 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
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59 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
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60 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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61 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 790 | 62 |
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63 =========================================================================*/ |
| 790 | 64 |
| 65 | |
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66 #include "../PrecompiledHeaders.h" |
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67 |
| 790 | 68 #ifndef NOMINMAX |
| 69 #define NOMINMAX | |
| 70 #endif | |
| 71 | |
| 72 #include "ParsedDicomFile.h" | |
| 73 | |
| 74 #include "FromDcmtkBridge.h" | |
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75 #include "Internals/DicomFrameIndex.h" |
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76 #include "Internals/DicomImageDecoder.h" |
| 790 | 77 #include "ToDcmtkBridge.h" |
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78 |
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79 #include "../Images/Image.h" |
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80 #include "../Images/ImageProcessing.h" |
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81 #include "../Images/PamReader.h" |
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82 #include "../Logging.h" |
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83 #include "../OrthancException.h" |
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84 #include "../SerializationToolbox.h" |
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85 #include "../Toolbox.h" |
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86 |
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87 #if ORTHANC_SANDBOXED == 0 |
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88 # include "../SystemToolbox.h" |
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89 #endif |
| 790 | 90 |
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91 #if ORTHANC_ENABLE_JPEG == 1 |
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92 # include "../Images/JpegReader.h" |
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93 #endif |
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94 |
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95 #if ORTHANC_ENABLE_PNG == 1 |
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96 # include "../Images/PngReader.h" |
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97 #endif |
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98 |
| 790 | 99 #include <list> |
| 100 #include <limits> | |
| 101 | |
| 102 #include <boost/lexical_cast.hpp> | |
| 103 | |
| 104 #include <dcmtk/dcmdata/dcchrstr.h> | |
| 105 #include <dcmtk/dcmdata/dcdicent.h> | |
| 106 #include <dcmtk/dcmdata/dcdict.h> | |
| 107 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 108 #include <dcmtk/dcmdata/dcuid.h> | |
| 109 #include <dcmtk/dcmdata/dcmetinf.h> | |
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110 #include <dcmtk/dcmdata/dcdeftag.h> |
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111 #include <dcmtk/dcmdata/dcswap.h> |
| 790 | 112 |
| 113 #include <dcmtk/dcmdata/dcvrae.h> | |
| 114 #include <dcmtk/dcmdata/dcvras.h> | |
| 115 #include <dcmtk/dcmdata/dcvrcs.h> | |
| 116 #include <dcmtk/dcmdata/dcvrda.h> | |
| 117 #include <dcmtk/dcmdata/dcvrds.h> | |
| 118 #include <dcmtk/dcmdata/dcvrdt.h> | |
| 119 #include <dcmtk/dcmdata/dcvrfd.h> | |
| 120 #include <dcmtk/dcmdata/dcvrfl.h> | |
| 121 #include <dcmtk/dcmdata/dcvris.h> | |
| 122 #include <dcmtk/dcmdata/dcvrlo.h> | |
| 123 #include <dcmtk/dcmdata/dcvrlt.h> | |
| 124 #include <dcmtk/dcmdata/dcvrpn.h> | |
| 125 #include <dcmtk/dcmdata/dcvrsh.h> | |
| 126 #include <dcmtk/dcmdata/dcvrsl.h> | |
| 127 #include <dcmtk/dcmdata/dcvrss.h> | |
| 128 #include <dcmtk/dcmdata/dcvrst.h> | |
| 129 #include <dcmtk/dcmdata/dcvrtm.h> | |
| 130 #include <dcmtk/dcmdata/dcvrui.h> | |
| 131 #include <dcmtk/dcmdata/dcvrul.h> | |
| 132 #include <dcmtk/dcmdata/dcvrus.h> | |
| 133 #include <dcmtk/dcmdata/dcvrut.h> | |
| 134 #include <dcmtk/dcmdata/dcpixel.h> | |
| 135 #include <dcmtk/dcmdata/dcpixseq.h> | |
| 136 #include <dcmtk/dcmdata/dcpxitem.h> | |
| 137 | |
| 138 | |
| 139 #include <boost/math/special_functions/round.hpp> | |
| 140 #include <dcmtk/dcmdata/dcostrmb.h> | |
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141 #include <boost/algorithm/string/predicate.hpp> |
| 790 | 142 |
| 143 | |
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144 #if DCMTK_VERSION_NUMBER <= 360 |
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145 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
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146 #endif |
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147 |
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148 |
| 790 | 149 |
| 150 namespace Orthanc | |
| 151 { | |
| 794 | 152 struct ParsedDicomFile::PImpl |
| 153 { | |
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154 std::unique_ptr<DcmFileFormat> file_; |
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155 std::unique_ptr<DicomFrameIndex> frameIndex_; |
| 794 | 156 }; |
| 157 | |
| 158 | |
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159 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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160 static void ParseTagAndGroup(DcmTagKey& key, |
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161 const std::string& tag) |
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162 { |
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163 DicomTag t = FromDcmtkBridge::ParseTag(tag); |
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164 key = DcmTagKey(t.GetGroup(), t.GetElement()); |
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165 } |
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166 |
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167 |
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168 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, |
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169 E_TransferSyntax transferSyntax) |
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170 { |
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171 DcmPixelSequence* pixelSequence = NULL; |
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172 if (pixelData.getEncapsulatedRepresentation |
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173 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) |
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174 { |
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175 return pixelSequence->card(); |
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176 } |
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177 else |
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178 { |
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179 return 1; |
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180 } |
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181 } |
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182 |
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183 |
| 790 | 184 static void SendPathValueForDictionary(RestApiOutput& output, |
| 185 DcmItem& dicom) | |
| 186 { | |
| 187 Json::Value v = Json::arrayValue; | |
| 188 | |
| 189 for (unsigned long i = 0; i < dicom.card(); i++) | |
| 190 { | |
| 191 DcmElement* element = dicom.getElement(i); | |
| 192 if (element) | |
| 193 { | |
| 194 char buf[16]; | |
| 195 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
| 196 v.append(buf); | |
| 197 } | |
| 198 } | |
| 199 | |
| 200 output.AnswerJson(v); | |
| 201 } | |
| 202 | |
| 203 | |
| 204 static void SendSequence(RestApiOutput& output, | |
| 205 DcmSequenceOfItems& sequence) | |
| 206 { | |
| 207 // This element is a sequence | |
| 208 Json::Value v = Json::arrayValue; | |
| 209 | |
| 210 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 211 { | |
| 212 v.append(boost::lexical_cast<std::string>(i)); | |
| 213 } | |
| 214 | |
| 215 output.AnswerJson(v); | |
| 216 } | |
| 217 | |
| 218 | |
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219 namespace |
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221 class DicomFieldStream : public IHttpStreamAnswer |
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222 { |
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223 private: |
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224 DcmElement& element_; |
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225 uint32_t length_; |
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226 uint32_t offset_; |
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227 std::string chunk_; |
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228 size_t chunkSize_; |
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229 |
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230 public: |
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231 DicomFieldStream(DcmElement& element, |
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232 E_TransferSyntax transferSyntax) : |
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233 element_(element), |
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234 length_(element.getLength(transferSyntax)), |
| 1616 | 235 offset_(0), |
| 236 chunkSize_(0) | |
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237 { |
| 1521 | 238 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB |
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239 chunk_.resize(CHUNK_SIZE); |
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240 } |
| 790 | 241 |
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242 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
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243 bool /*deflateAllowed*/) |
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244 ORTHANC_OVERRIDE |
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245 { |
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246 // No support for compression |
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247 return HttpCompression_None; |
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248 } |
| 790 | 249 |
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250 virtual bool HasContentFilename(std::string& filename) ORTHANC_OVERRIDE |
| 790 | 251 { |
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252 return false; |
| 790 | 253 } |
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254 |
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255 virtual std::string GetContentType() ORTHANC_OVERRIDE |
| 790 | 256 { |
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257 return EnumerationToString(MimeType_Binary); |
| 790 | 258 } |
| 259 | |
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260 virtual uint64_t GetContentLength() ORTHANC_OVERRIDE |
| 790 | 261 { |
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262 return length_; |
| 790 | 263 } |
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264 |
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265 virtual bool ReadNextChunk() ORTHANC_OVERRIDE |
| 790 | 266 { |
| 1520 | 267 assert(offset_ <= length_); |
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268 |
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269 if (offset_ == length_) |
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270 { |
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271 return false; |
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272 } |
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273 else |
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274 { |
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275 if (length_ - offset_ < chunk_.size()) |
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276 { |
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277 chunkSize_ = length_ - offset_; |
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278 } |
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279 else |
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280 { |
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281 chunkSize_ = chunk_.size(); |
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282 } |
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283 |
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284 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
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285 |
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286 offset_ += chunkSize_; |
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287 |
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288 if (!cond.good()) |
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289 { |
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290 throw OrthancException(ErrorCode_InternalError, |
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291 "Error while sending a DICOM field: " + |
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292 std::string(cond.text())); |
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293 } |
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294 |
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295 return true; |
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296 } |
| 790 | 297 } |
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298 |
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299 virtual const char *GetChunkContent() ORTHANC_OVERRIDE |
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300 { |
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301 return chunk_.c_str(); |
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302 } |
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303 |
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304 virtual size_t GetChunkSize() ORTHANC_OVERRIDE |
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305 { |
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306 return chunkSize_; |
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307 } |
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308 }; |
| 790 | 309 } |
| 310 | |
| 311 | |
| 312 static bool AnswerPixelData(RestApiOutput& output, | |
| 313 DcmItem& dicom, | |
| 314 E_TransferSyntax transferSyntax, | |
| 315 const std::string* blockUri) | |
| 316 { | |
| 317 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
| 318 DICOM_TAG_PIXEL_DATA.GetElement()); | |
| 319 | |
| 320 DcmElement *element = NULL; | |
| 321 if (!dicom.findAndGetElement(k, element).good() || | |
| 322 element == NULL) | |
| 323 { | |
| 324 return false; | |
| 325 } | |
| 326 | |
| 327 try | |
| 328 { | |
| 329 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
| 330 if (blockUri == NULL) | |
| 331 { | |
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332 // The user asks how many blocks are present in this pixel data |
| 790 | 333 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
| 334 | |
| 335 Json::Value result(Json::arrayValue); | |
| 336 for (unsigned int i = 0; i < blocks; i++) | |
| 337 { | |
| 338 result.append(boost::lexical_cast<std::string>(i)); | |
| 339 } | |
| 340 | |
| 341 output.AnswerJson(result); | |
| 342 return true; | |
| 343 } | |
| 344 | |
| 345 | |
| 346 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
| 347 | |
| 348 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
| 349 { | |
| 350 DcmPixelSequence* pixelSequence = NULL; | |
| 351 if (pixelData.getEncapsulatedRepresentation | |
| 352 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 353 { | |
| 354 // This is the case for JPEG transfer syntaxes | |
| 355 if (block < pixelSequence->card()) | |
| 356 { | |
| 357 DcmPixelItem* pixelItem = NULL; | |
| 358 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
| 359 { | |
| 360 if (pixelItem->getLength() == 0) | |
| 361 { | |
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362 output.AnswerBuffer(NULL, 0, MimeType_Binary); |
| 790 | 363 return true; |
| 364 } | |
| 365 | |
| 366 Uint8* buffer = NULL; | |
| 367 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
| 368 { | |
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369 output.AnswerBuffer(buffer, pixelItem->getLength(), MimeType_Binary); |
| 790 | 370 return true; |
| 371 } | |
| 372 } | |
| 373 } | |
| 374 } | |
| 375 else | |
| 376 { | |
| 377 // This is the case for raw, uncompressed image buffers | |
| 378 assert(*blockUri == "0"); | |
|
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379 DicomFieldStream stream(*element, transferSyntax); |
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380 output.AnswerStream(stream); |
| 790 | 381 } |
| 382 } | |
| 383 } | |
| 384 catch (boost::bad_lexical_cast&) | |
| 385 { | |
| 386 // The URI entered by the user is not a number | |
| 387 } | |
| 388 catch (std::bad_cast&) | |
| 389 { | |
| 390 // This should never happen | |
| 391 } | |
| 392 | |
| 393 return false; | |
| 394 } | |
| 395 | |
| 396 | |
| 397 static void SendPathValueForLeaf(RestApiOutput& output, | |
| 398 const std::string& tag, | |
| 399 DcmItem& dicom, | |
| 400 E_TransferSyntax transferSyntax) | |
| 401 { | |
| 402 DcmTagKey k; | |
| 403 ParseTagAndGroup(k, tag); | |
| 404 | |
| 405 DcmSequenceOfItems* sequence = NULL; | |
| 406 if (dicom.findAndGetSequence(k, sequence).good() && | |
| 407 sequence != NULL && | |
| 408 sequence->getVR() == EVR_SQ) | |
| 409 { | |
| 410 SendSequence(output, *sequence); | |
| 411 return; | |
| 412 } | |
| 413 | |
| 414 DcmElement* element = NULL; | |
| 415 if (dicom.findAndGetElement(k, element).good() && | |
| 416 element != NULL && | |
| 417 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
| 418 element->getVR() != EVR_SQ) | |
| 419 { | |
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420 DicomFieldStream stream(*element, transferSyntax); |
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421 output.AnswerStream(stream); |
| 790 | 422 } |
| 423 } | |
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424 #endif |
| 790 | 425 |
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426 |
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427 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 428 void ParsedDicomFile::SendPathValue(RestApiOutput& output, |
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429 const UriComponents& uri) const |
| 790 | 430 { |
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431 DcmItem* dicom = GetDcmtkObjectConst().getDataset(); |
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432 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
| 790 | 433 |
| 434 // Special case: Accessing the pixel data | |
| 435 if (uri.size() == 1 || | |
| 436 uri.size() == 2) | |
| 437 { | |
| 438 DcmTagKey tag; | |
| 439 ParseTagAndGroup(tag, uri[0]); | |
| 440 | |
| 441 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
| 442 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
| 443 { | |
| 444 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
| 445 return; | |
| 446 } | |
| 447 } | |
| 448 | |
| 449 // Go down in the tag hierarchy according to the URI | |
| 450 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
| 451 { | |
| 452 size_t index; | |
| 453 try | |
| 454 { | |
| 455 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
| 456 } | |
| 457 catch (boost::bad_lexical_cast&) | |
| 458 { | |
| 459 return; | |
| 460 } | |
| 461 | |
| 462 DcmTagKey k; | |
| 463 DcmItem *child = NULL; | |
| 464 ParseTagAndGroup(k, uri[2 * pos]); | |
| 465 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
| 466 child == NULL) | |
| 467 { | |
| 468 return; | |
| 469 } | |
| 470 | |
| 471 dicom = child; | |
| 472 } | |
| 473 | |
| 474 // We have reached the end of the URI | |
| 475 if (uri.size() % 2 == 0) | |
| 476 { | |
| 477 SendPathValueForDictionary(output, *dicom); | |
| 478 } | |
| 479 else | |
| 480 { | |
| 481 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
| 482 } | |
| 483 } | |
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484 #endif |
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485 |
| 790 | 486 |
| 487 void ParsedDicomFile::Remove(const DicomTag& tag) | |
| 488 { | |
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489 RemovePath(DicomPath(tag)); |
| 790 | 490 } |
| 491 | |
| 492 | |
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493 void ParsedDicomFile::Clear(const DicomTag& tag, |
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494 bool onlyIfExists) |
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495 { |
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496 ClearPath(DicomPath(tag), onlyIfExists); |
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497 } |
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498 |
| 790 | 499 |
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500 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
| 790 | 501 { |
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502 InvalidateCache(); |
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503 |
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504 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
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505 |
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506 // Loop over the dataset to detect its private tags |
| 790 | 507 typedef std::list<DcmElement*> Tags; |
| 508 Tags privateTags; | |
| 509 | |
| 510 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 511 { | |
| 512 DcmElement* element = dataset.getElement(i); | |
| 513 DcmTag tag(element->getTag()); | |
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514 |
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515 // Is this a private tag? |
| 1694 | 516 if (tag.isPrivate()) |
| 790 | 517 { |
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518 bool remove = true; |
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519 |
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520 // Check whether this private tag is to be kept |
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521 if (toKeep != NULL) |
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522 { |
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523 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
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524 if (toKeep->find(tmp) != toKeep->end()) |
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525 { |
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526 remove = false; // Keep it |
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527 } |
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528 } |
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529 |
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530 if (remove) |
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531 { |
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532 privateTags.push_back(element); |
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533 } |
| 790 | 534 } |
| 535 } | |
| 536 | |
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537 // Loop over the detected private tags to remove them |
| 790 | 538 for (Tags::iterator it = privateTags.begin(); |
| 539 it != privateTags.end(); ++it) | |
| 540 { | |
| 541 DcmElement* tmp = dataset.remove(*it); | |
| 542 if (tmp != NULL) | |
| 543 { | |
| 544 delete tmp; | |
| 545 } | |
| 546 } | |
| 547 } | |
| 548 | |
| 549 | |
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550 static void InsertInternal(DcmDataset& dicom, |
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551 DcmElement* element) |
| 790 | 552 { |
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553 OFCondition cond = dicom.insert(element, false, false); |
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554 if (!cond.good()) |
| 790 | 555 { |
| 556 // This field already exists | |
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557 delete element; |
| 790 | 558 throw OrthancException(ErrorCode_InternalError); |
| 559 } | |
| 560 } | |
| 561 | |
| 562 | |
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563 void ParsedDicomFile::Insert(const DicomTag& tag, |
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564 const Json::Value& value, |
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565 bool decodeDataUriScheme, |
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566 const std::string& privateCreator) |
| 790 | 567 { |
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568 if (tag.GetElement() == 0x0000) |
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569 { |
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570 // Prevent manually modifying generic group length tags: This is |
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571 // handled by DCMTK serialization |
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572 return; |
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573 } |
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574 |
|
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575 if (GetDcmtkObject().getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
|
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576 { |
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577 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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578 } |
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579 |
|
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580 if (decodeDataUriScheme && |
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581 value.type() == Json::stringValue && |
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582 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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583 tag == DICOM_TAG_PIXEL_DATA)) |
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584 { |
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585 if (EmbedContentInternal(value.asString())) |
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586 { |
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587 return; |
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588 } |
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589 } |
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590 |
|
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591 InvalidateCache(); |
|
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592 |
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593 bool hasCodeExtensions; |
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594 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
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595 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
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596 InsertInternal(*GetDcmtkObject().getDataset(), element.release()); |
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597 } |
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598 |
| 790 | 599 |
|
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600 void ParsedDicomFile::ReplacePlainString(const DicomTag& tag, |
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601 const std::string& utf8Value) |
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602 { |
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603 if (tag.IsPrivate()) |
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604 { |
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605 throw OrthancException(ErrorCode_InternalError, |
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606 "Cannot apply this function to private tags: " + tag.Format()); |
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607 } |
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608 else |
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609 { |
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610 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent, |
|
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611 "" /* not a private tag, so no private creator */); |
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612 } |
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613 } |
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614 |
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615 |
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616 void ParsedDicomFile::SetIfAbsent(const DicomTag& tag, |
|
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617 const std::string& utf8Value) |
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618 { |
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619 std::string currentValue; |
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620 if (!GetTagValue(currentValue, tag)) |
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621 { |
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622 ReplacePlainString(tag, utf8Value); |
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623 } |
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624 } |
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625 |
|
4296
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626 void ParsedDicomFile::RemovePrivateTags() |
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627 { |
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628 RemovePrivateTagsInternal(NULL); |
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629 } |
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630 |
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631 void ParsedDicomFile::RemovePrivateTags(const std::set<DicomTag> &toKeep) |
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632 { |
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633 RemovePrivateTagsInternal(&toKeep); |
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634 } |
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635 |
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636 |
|
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637 static bool CanReplaceProceed(DcmDataset& dicom, |
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638 const DcmTagKey& tag, |
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639 DicomReplaceMode mode) |
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640 { |
| 1979 | 641 if (dicom.findAndDeleteElement(tag).good()) |
| 790 | 642 { |
| 1979 | 643 // This tag was existing, it has been deleted |
| 644 return true; | |
| 645 } | |
| 646 else | |
| 647 { | |
| 648 // This tag was absent, act wrt. the specified "mode" | |
| 790 | 649 switch (mode) |
| 650 { | |
| 651 case DicomReplaceMode_InsertIfAbsent: | |
| 1979 | 652 return true; |
| 790 | 653 |
| 654 case DicomReplaceMode_ThrowIfAbsent: | |
|
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655 throw OrthancException(ErrorCode_InexistentItem, "Cannot replace inexistent tag: " + |
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656 FromDcmtkBridge::GetTagName(DicomTag(tag.getGroup(), tag.getElement()), "")); |
| 790 | 657 |
| 658 case DicomReplaceMode_IgnoreIfAbsent: | |
| 1979 | 659 return false; |
| 660 | |
| 661 default: | |
| 662 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 790 | 663 } |
| 664 } | |
|
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665 } |
|
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666 |
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667 |
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668 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
| 1695 | 669 const std::string& utf8Value, |
|
1818
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670 bool decodeDataUriScheme) |
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671 { |
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672 if (tag != DICOM_TAG_SOP_CLASS_UID && |
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673 tag != DICOM_TAG_SOP_INSTANCE_UID) |
| 790 | 674 { |
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675 return; |
| 790 | 676 } |
| 677 | |
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678 std::string binary; |
| 1695 | 679 const std::string* decoded = &utf8Value; |
|
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680 |
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681 if (decodeDataUriScheme && |
|
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682 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
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683 { |
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684 std::string mime; |
|
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685 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
|
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686 { |
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687 throw OrthancException(ErrorCode_BadFileFormat); |
|
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688 } |
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|
689 |
|
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690 decoded = &binary; |
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691 } |
| 1695 | 692 else |
| 693 { | |
|
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|
694 bool hasCodeExtensions; |
|
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695 Encoding encoding = DetectEncoding(hasCodeExtensions); |
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696 if (encoding != Encoding_Utf8) |
| 1695 | 697 { |
| 698 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
| 699 decoded = &binary; | |
| 700 } | |
| 701 } | |
| 790 | 702 |
| 703 /** | |
| 704 * dcmodify will automatically correct 'Media Storage SOP Class | |
| 705 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
| 706 * you make changes to the related tags in the dataset ('SOP Class | |
| 707 * UID' and 'SOP Instance UID') via insert or modify mode | |
| 708 * options. You can disable this behaviour by using the -nmu | |
| 709 * option. | |
| 710 **/ | |
| 711 | |
| 712 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
| 713 { | |
|
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|
714 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
| 790 | 715 } |
| 716 | |
| 717 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
| 718 { | |
|
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719 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
|
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720 } |
|
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721 } |
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|
722 |
|
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|
723 |
|
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|
724 void ParsedDicomFile::Replace(const DicomTag& tag, |
| 1695 | 725 const std::string& utf8Value, |
|
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|
726 bool decodeDataUriScheme, |
|
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727 DicomReplaceMode mode, |
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|
728 const std::string& privateCreator) |
|
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729 { |
|
2797
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|
730 if (tag.GetElement() == 0x0000) |
|
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|
731 { |
|
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|
732 // Prevent manually modifying generic group length tags: This is |
|
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|
733 // handled by DCMTK serialization |
|
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|
734 return; |
|
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|
735 } |
|
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|
736 else |
|
1982
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|
737 { |
|
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|
738 InvalidateCache(); |
|
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739 |
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|
740 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
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|
741 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
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742 { |
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743 // Either the tag was previously existing (and now removed), or |
|
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|
744 // the replace mode was set to "InsertIfAbsent" |
|
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745 |
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746 if (decodeDataUriScheme && |
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747 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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748 tag == DICOM_TAG_PIXEL_DATA)) |
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|
749 { |
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750 if (EmbedContentInternal(utf8Value)) |
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|
751 { |
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752 return; |
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753 } |
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754 } |
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755 |
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756 std::unique_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag, privateCreator)); |
| 1979 | 757 |
|
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758 if (!utf8Value.empty()) |
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759 { |
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760 bool hasCodeExtensions; |
|
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761 Encoding encoding = DetectEncoding(hasCodeExtensions); |
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762 FromDcmtkBridge::FillElementWithString(*element, utf8Value, decodeDataUriScheme, encoding); |
|
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763 } |
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764 |
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765 InsertInternal(dicom, element.release()); |
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766 |
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767 if (tag == DICOM_TAG_SOP_CLASS_UID || |
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768 tag == DICOM_TAG_SOP_INSTANCE_UID) |
|
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769 { |
|
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770 if (decodeDataUriScheme && |
|
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771 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
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772 { |
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773 std::string mime, decoded; |
|
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774 if (!Toolbox::DecodeDataUriScheme(mime, decoded, utf8Value)) |
|
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775 { |
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776 throw OrthancException(ErrorCode_BadFileFormat); |
|
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777 } |
|
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778 else |
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779 { |
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780 UpdateStorageUid(tag, decoded, false); |
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781 } |
|
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782 } |
|
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783 else |
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784 { |
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785 UpdateStorageUid(tag, utf8Value, false); |
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786 } |
|
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787 } |
|
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788 } |
| 1979 | 789 } |
|
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790 } |
|
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|
791 |
|
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changeset
|
792 |
|
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|
793 void ParsedDicomFile::Replace(const DicomTag& tag, |
|
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|
794 const Json::Value& value, |
|
1818
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795 bool decodeDataUriScheme, |
|
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796 DicomReplaceMode mode, |
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797 const std::string& privateCreator) |
|
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798 { |
|
2797
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799 if (tag.GetElement() == 0x0000) |
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800 { |
|
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801 // Prevent manually modifying generic group length tags: This is |
|
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802 // handled by DCMTK serialization |
|
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changeset
|
803 return; |
|
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804 } |
|
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805 else if (value.type() == Json::stringValue) |
|
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parents:
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|
806 { |
|
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|
807 Replace(tag, value.asString(), decodeDataUriScheme, mode, privateCreator); |
|
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808 } |
|
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809 else |
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810 { |
| 1979 | 811 if (tag == DICOM_TAG_SOP_CLASS_UID || |
| 812 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
|
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813 { |
|
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814 // Must be a string |
|
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815 throw OrthancException(ErrorCode_BadParameterType); |
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816 } |
|
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817 |
|
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818 InvalidateCache(); |
| 1979 | 819 |
|
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820 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
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821 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
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822 { |
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823 // Either the tag was previously existing (and now removed), or |
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824 // the replace mode was set to "InsertIfAbsent" |
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825 |
|
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826 bool hasCodeExtensions; |
|
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827 Encoding encoding = DetectEncoding(hasCodeExtensions); |
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828 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
|
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829 } |
| 790 | 830 } |
| 831 } | |
| 832 | |
| 833 | |
|
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|
834 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
|
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835 void ParsedDicomFile::Answer(RestApiOutput& output) const |
| 790 | 836 { |
| 837 std::string serialized; | |
|
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838 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *GetDcmtkObjectConst().getDataset())) |
| 790 | 839 { |
|
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840 output.AnswerBuffer(serialized, MimeType_Dicom); |
| 790 | 841 } |
| 842 } | |
|
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|
843 #endif |
| 790 | 844 |
| 845 | |
| 846 bool ParsedDicomFile::GetTagValue(std::string& value, | |
|
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847 const DicomTag& tag) const |
| 790 | 848 { |
| 849 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
|
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850 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
|
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851 |
|
1818
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852 if (tag.IsPrivate() || |
|
1655
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diff
changeset
|
853 FromDcmtkBridge::IsUnknownTag(tag) || |
|
1556
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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854 tag == DICOM_TAG_PIXEL_DATA || |
|
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855 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
| 790 | 856 { |
|
1307
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Fix replacement and insertion of private DICOM tags
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changeset
|
857 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
|
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changeset
|
858 long unsigned int count = 0; |
| 790 | 859 |
|
1307
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Fix replacement and insertion of private DICOM tags
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changeset
|
860 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
|
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Fix replacement and insertion of private DICOM tags
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|
861 { |
|
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Fix replacement and insertion of private DICOM tags
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862 if (count > 0) |
|
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|
863 { |
|
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Fix replacement and insertion of private DICOM tags
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|
864 assert(data != NULL); |
|
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changeset
|
865 value.assign(reinterpret_cast<const char*>(data), count); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
866 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
867 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
868 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
869 value.clear(); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
870 } |
| 790 | 871 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
872 return true; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
873 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
874 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
875 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
876 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
877 } |
| 790 | 878 } |
| 879 else | |
| 880 { | |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
881 DcmElement* element = NULL; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
882 if (!dataset.findAndGetElement(k, element).good() || |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
883 element == NULL) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
884 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
885 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
886 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
887 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
888 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
889 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
890 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
891 std::set<DicomTag> tmp; |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
892 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
893 (*element, DicomToJsonFlags_Default, |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
894 0, encoding, hasCodeExtensions, tmp)); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
895 |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
896 if (v.get() == NULL || |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
897 v->IsNull()) |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
898 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
899 value = ""; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
900 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
901 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
902 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
903 // TODO v->IsBinary() |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
904 value = v->GetContent(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
905 } |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
906 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
907 return true; |
| 790 | 908 } |
| 909 } | |
| 910 | |
| 911 | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
912 DicomInstanceHasher ParsedDicomFile::GetHasher() const |
| 790 | 913 { |
| 914 std::string patientId, studyUid, seriesUid, instanceUid; | |
| 915 | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
916 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID)) |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
917 { |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
918 /** |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
919 * If "PatientID" is absent, be tolerant by considering it |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
920 * equals the empty string, then proceed. In Orthanc <= 1.5.6, |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
921 * an exception "Bad file format" was generated. |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
922 * https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
| 3853 | 923 * https://hg.orthanc-server.com/orthanc/rev/4c45e018bd3de3cfa21d6efc6734673aaaee4435 |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
924 **/ |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
925 patientId.clear(); |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
926 } |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
927 |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
928 if (!GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || |
| 790 | 929 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || |
| 930 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
| 931 { | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
932 throw OrthancException(ErrorCode_BadFileFormat, "missing StudyInstanceUID, SeriesInstanceUID or SOPInstanceUID"); |
| 790 | 933 } |
| 934 | |
| 935 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
| 936 } | |
| 937 | |
| 938 | |
| 939 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
| 940 { | |
|
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
941 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDcmtkObject().getDataset())) |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
942 { |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
943 throw OrthancException(ErrorCode_InternalError, "Cannot write DICOM file to memory"); |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
944 } |
| 790 | 945 } |
| 946 | |
| 947 | |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
948 #if ORTHANC_SANDBOXED == 0 |
| 790 | 949 void ParsedDicomFile::SaveToFile(const std::string& path) |
| 950 { | |
| 951 // TODO Avoid using a temporary memory buffer, write directly on disk | |
| 952 std::string content; | |
| 953 SaveToMemoryBuffer(content); | |
| 2140 | 954 SystemToolbox::WriteFile(content, path); |
| 790 | 955 } |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
956 #endif |
| 790 | 957 |
| 958 | |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
959 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
| 790 | 960 { |
| 794 | 961 pimpl_->file_.reset(new DcmFileFormat); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
962 |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
963 if (createIdentifiers) |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
964 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
965 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
966 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
967 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
968 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
969 } |
| 790 | 970 } |
| 971 | |
| 791 | 972 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
973 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
974 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
975 bool permissive, |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
976 const std::string& defaultPrivateCreator, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
977 const std::map<uint16_t, std::string>& privateCreators) |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
978 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
979 pimpl_->file_.reset(new DcmFileFormat); |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
980 InvalidateCache(); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
981 |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
982 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
983 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
984 if (tmp == NULL) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
985 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
986 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
987 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
988 else if (tmp->IsBinary()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
989 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
990 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
991 "Invalid binary string in the SpecificCharacterSet (0008,0005) tag"); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
992 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
993 else if (tmp->IsNull() || |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
994 tmp->GetContent().empty()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
995 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
996 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
997 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
998 else |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
999 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1000 Encoding encoding; |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1001 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1002 if (GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1003 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1004 SetEncoding(encoding); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1005 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1006 else |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1007 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1008 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1009 "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" + |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1010 tmp->GetContent() + "\""); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1011 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1012 } |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1013 |
|
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1014 for (DicomMap::Content::const_iterator |
|
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1015 it = source.content_.begin(); it != source.content_.end(); ++it) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1016 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1017 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1018 !it->second->IsNull()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1019 { |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1020 try |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1021 { |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1022 // Same as "ReplacePlainString()", but with support for private creator |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1023 const std::string& utf8Value = it->second->GetContent(); |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1024 |
| 4039 | 1025 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(it->first.GetGroup()); |
| 1026 | |
| 1027 if (it->first.IsPrivate() && | |
| 1028 found != privateCreators.end()) | |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1029 { |
| 4039 | 1030 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, found->second); |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1031 } |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1032 else |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1033 { |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1034 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator); |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1035 } |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1036 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1037 catch (OrthancException&) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1038 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1039 if (!permissive) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1040 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1041 throw; |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1042 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1043 } |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1044 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1045 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1046 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1047 |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1048 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1049 Encoding defaultEncoding, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1050 bool permissive) : |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1051 pimpl_(new PImpl) |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1052 { |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1053 std::map<uint16_t, std::string> noPrivateCreators; |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1054 CreateFromDicomMap(map, defaultEncoding, permissive, "" /* no default private creator */, noPrivateCreators); |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1055 } |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1056 |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
1057 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1058 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1059 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1060 bool permissive, |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1061 const std::string& defaultPrivateCreator, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1062 const std::map<uint16_t, std::string>& privateCreators) : |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1063 pimpl_(new PImpl) |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1064 { |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1065 CreateFromDicomMap(map, defaultEncoding, permissive, defaultPrivateCreator, privateCreators); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1066 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1067 |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1068 |
|
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1069 ParsedDicomFile::ParsedDicomFile(const void* content, |
|
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1070 size_t size) : pimpl_(new PImpl) |
| 791 | 1071 { |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1072 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
| 791 | 1073 } |
| 1074 | |
| 794 | 1075 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
| 791 | 1076 { |
| 1077 if (content.size() == 0) | |
| 1078 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1079 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
| 791 | 1080 } |
| 1081 else | |
| 1082 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1083 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
| 791 | 1084 } |
| 1085 } | |
| 792 | 1086 |
| 1087 | |
| 4200 | 1088 ParsedDicomFile::ParsedDicomFile(const ParsedDicomFile& other, |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1089 bool keepSopInstanceUid) : |
| 794 | 1090 pimpl_(new PImpl) |
| 792 | 1091 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1092 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.GetDcmtkObjectConst().clone())); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1093 |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1094 if (!keepSopInstanceUid) |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1095 { |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1096 // Create a new instance-level identifier |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1097 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1098 } |
| 792 | 1099 } |
| 1100 | |
| 1101 | |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1102 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1103 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1104 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1105 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1106 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1107 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1108 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1109 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1110 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1111 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1112 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1113 |
|
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1114 ParsedDicomFile::ParsedDicomFile(DcmFileFormat* dicom) : pimpl_(new PImpl) |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1115 { |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1116 pimpl_->file_.reset(dicom); // No cloning |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1117 } |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1118 |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1119 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1120 DcmFileFormat& ParsedDicomFile::GetDcmtkObjectConst() const |
| 793 | 1121 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1122 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1123 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1124 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1125 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1126 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1127 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1128 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1129 return *pimpl_->file_; |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1130 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1131 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1132 |
| 4297 | 1133 ParsedDicomFile *ParsedDicomFile::AcquireDcmtkObject(DcmFileFormat *dicom) // No clone here |
|
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1134 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1135 return new ParsedDicomFile(dicom); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1136 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1137 |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1138 DcmFileFormat &ParsedDicomFile::GetDcmtkObject() |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1139 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1140 return GetDcmtkObjectConst(); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1141 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1142 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1143 |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1144 DcmFileFormat* ParsedDicomFile::ReleaseDcmtkObject() |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1145 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1146 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1147 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1148 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1149 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1150 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1151 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1152 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1153 pimpl_->frameIndex_.reset(NULL); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1154 return pimpl_->file_.release(); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1155 } |
| 793 | 1156 } |
| 1157 | |
| 1158 | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1159 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) const |
| 793 | 1160 { |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1161 return new ParsedDicomFile(*this, keepSopInstanceUid); |
| 793 | 1162 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1163 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1164 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1165 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1166 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1167 std::string mimeString, content; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1168 if (!Toolbox::DecodeDataUriScheme(mimeString, content, dataUriScheme)) |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1169 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1170 return false; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1171 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1172 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1173 Toolbox::ToLowerCase(mimeString); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1174 MimeType mime = StringToMimeType(mimeString); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1175 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1176 switch (mime) |
| 1562 | 1177 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1178 case MimeType_Png: |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1179 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1180 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1181 break; |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1182 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1183 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1184 "Orthanc was compiled without support of PNG"); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1185 #endif |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1186 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1187 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1188 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1189 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1190 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1191 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1192 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1193 "Orthanc was compiled without support of JPEG"); |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1194 #endif |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1195 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1196 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1197 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1198 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1199 |
|
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1200 case MimeType_Binary: |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1201 EmbedImage(mime, content); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1202 break; |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1203 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1204 case MimeType_Pdf: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1205 EmbedPdf(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1206 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1207 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1208 default: |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1209 throw OrthancException(ErrorCode_NotImplemented, |
| 2989 | 1210 "Unsupported MIME type for the content of a new DICOM file: " + |
| 1211 std::string(EnumerationToString(mime))); | |
| 1562 | 1212 } |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1213 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1214 return true; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1215 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1216 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1217 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1218 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1219 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1220 if (!EmbedContentInternal(dataUriScheme)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1221 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1222 throw OrthancException(ErrorCode_BadFileFormat); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1223 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1224 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1225 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1226 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1227 void ParsedDicomFile::EmbedImage(MimeType mime, |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1228 const std::string& content) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1229 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1230 switch (mime) |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1231 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1232 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1233 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1234 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1235 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1236 JpegReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1237 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1238 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1239 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1240 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1241 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1242 |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1243 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1244 case MimeType_Png: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1245 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1246 PngReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1247 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1248 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1249 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1250 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1251 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1252 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1253 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1254 { |
|
4211
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1255 // "true" means "enforce memory alignment": This is slower, |
|
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1256 // but possibly avoids crash related to non-aligned memory access |
|
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1257 PamReader reader(true); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1258 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1259 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1260 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1261 } |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1262 |
|
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1263 case MimeType_Binary: |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1264 EmbedRawPixelData(content); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1265 break; |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1266 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1267 default: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1268 throw OrthancException(ErrorCode_NotImplemented); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1269 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1270 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1271 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1272 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1273 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1274 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1275 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1276 accessor.GetFormat() != PixelFormat_Grayscale16 && |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1277 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1278 accessor.GetFormat() != PixelFormat_RGB24 && |
|
5054
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1279 accessor.GetFormat() != PixelFormat_RGBA32 && |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1280 accessor.GetFormat() != PixelFormat_RGBA64) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1281 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1282 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1283 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1284 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1285 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1286 |
|
5054
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1287 if (accessor.GetFormat() == PixelFormat_RGBA32 || |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1288 accessor.GetFormat() == PixelFormat_RGBA64) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1289 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1290 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1291 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1292 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1293 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1294 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1295 Remove(DICOM_TAG_PIXEL_DATA); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1296 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1297 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1298 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1299 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1300 // The "Number of frames" must only be present in multi-frame images |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1301 //ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1302 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1303 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1304 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1305 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1306 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1307 else |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1308 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1309 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1310 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1311 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1312 unsigned int bytesPerPixel = 0; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1313 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1314 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1315 { |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1316 case PixelFormat_Grayscale8: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1317 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1318 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1319 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1320 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1321 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1322 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1323 bytesPerPixel = 1; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1324 break; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1325 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1326 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1327 case PixelFormat_RGBA32: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1328 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1329 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1330 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1331 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1332 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1333 bytesPerPixel = 3; |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1334 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1335 // "Planar configuration" must only present if "Samples per |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1336 // Pixel" is greater than 1 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1337 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1338 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1339 break; |
|
5054
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1340 |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1341 case PixelFormat_RGBA64: |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1342 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1343 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1344 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1345 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1346 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1347 bytesPerPixel = 6; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1348 |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1349 // "Planar configuration" must only present if "Samples per |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1350 // Pixel" is greater than 1 |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1351 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1352 |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1353 break; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1354 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1355 case PixelFormat_Grayscale16: |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1356 case PixelFormat_SignedGrayscale16: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1357 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1358 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1359 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1360 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1361 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1362 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1363 bytesPerPixel = 2; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1364 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1365 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1366 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1367 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1368 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1369 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1370 assert(bytesPerPixel != 0); |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1371 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1372 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1373 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1374 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1375 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1376 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1377 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1378 Uint8* target = NULL; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1379 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1380 |
|
4278
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1381 const unsigned int height = accessor.GetHeight(); |
|
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1382 const unsigned int width = accessor.GetWidth(); |
|
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1383 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1384 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1385 Uint8* q = target; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1386 for (unsigned int y = 0; y < height; y++) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1387 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1388 switch (accessor.GetFormat()) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1389 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1390 case PixelFormat_RGB24: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1391 case PixelFormat_Grayscale8: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1392 case PixelFormat_Grayscale16: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1393 case PixelFormat_SignedGrayscale16: |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1394 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1395 memcpy(q, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1396 q += pitch; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1397 break; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1398 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1399 |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1400 case PixelFormat_RGBA32: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1401 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1402 // The alpha channel is not supported by the DICOM standard |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1403 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1404 for (unsigned int x = 0; x < width; x++, q += 3, source += 4) |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1405 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1406 q[0] = source[0]; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1407 q[1] = source[1]; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1408 q[2] = source[2]; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1409 } |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1410 |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1411 break; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1412 } |
|
5054
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1413 |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1414 case PixelFormat_RGBA64: |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1415 { |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1416 // The alpha channel is not supported by the DICOM standard |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1417 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1418 for (unsigned int x = 0; x < width; x++, q += 6, source += 8) |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1419 { |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1420 q[0] = source[0]; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1421 q[1] = source[1]; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1422 q[2] = source[2]; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1423 q[3] = source[3]; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1424 q[4] = source[4]; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1425 q[5] = source[5]; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1426 } |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1427 |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1428 break; |
|
255b02c68908
Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents:
4956
diff
changeset
|
1429 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1430 |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1431 default: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1432 throw OrthancException(ErrorCode_NotImplemented); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1433 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
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parents:
799
diff
changeset
|
1434 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1435 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1436 |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1437 static const Endianness ENDIANNESS = Toolbox::DetectEndianness(); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1438 if (ENDIANNESS == Endianness_Big && |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1439 (accessor.GetFormat() == PixelFormat_Grayscale16 || |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1440 accessor.GetFormat() == PixelFormat_SignedGrayscale16)) |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1441 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1442 // New in Orthanc 1.9.1 |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1443 assert(pitch % 2 == 0); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1444 swapBytes(target, accessor.GetHeight() * pitch, sizeof(uint16_t)); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1445 } |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1446 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1447 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good()) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1448 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1449 throw OrthancException(ErrorCode_InternalError); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1450 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1451 } |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1452 |
|
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1453 void ParsedDicomFile::EmbedRawPixelData(const std::string& content) |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1454 { |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1455 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1456 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1457 |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1458 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1459 |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1460 Uint8* target = NULL; |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1461 pixels->createUint8Array(content.size(), target); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1462 memcpy(target, content.c_str(), content.size()); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1463 |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1464 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good()) |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1465 { |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1466 throw OrthancException(ErrorCode_InternalError); |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1467 } |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1468 } |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1469 |
|
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
1470 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1471 Encoding ParsedDicomFile::DetectEncoding(bool& hasCodeExtensions) const |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1472 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1473 return FromDcmtkBridge::DetectEncoding(hasCodeExtensions, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1474 *GetDcmtkObjectConst().getDataset(), |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1475 GetDefaultDicomEncoding()); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1476 } |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1477 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1478 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1479 void ParsedDicomFile::SetEncoding(Encoding encoding) |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1480 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1481 if (encoding == Encoding_Windows1251) |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1482 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1483 // This Cyrillic codepage is not officially supported by the |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1484 // DICOM standard. Do not set the SpecificCharacterSet tag. |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1485 return; |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1486 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1487 |
|
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1488 std::string s = GetDicomSpecificCharacterSet(encoding); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1489 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1490 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1491 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1492 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1493 DicomToJsonFormat format, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1494 DicomToJsonFlags flags, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1495 unsigned int maxStringLength) const |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1496 { |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1497 std::set<DicomTag> ignoreTagLength; |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1498 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1499 format, flags, maxStringLength, ignoreTagLength); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1500 } |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1501 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1502 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1503 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1504 DicomToJsonFormat format, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1505 DicomToJsonFlags flags, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1506 unsigned int maxStringLength, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1507 const std::set<DicomTag>& ignoreTagLength) const |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1508 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1509 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1510 format, flags, maxStringLength, ignoreTagLength); |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1511 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1512 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1513 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1514 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1515 DicomToJsonFormat format) const |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1516 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1517 FromDcmtkBridge::ExtractHeaderAsJson(target, *GetDcmtkObjectConst().getMetaInfo(), format, DicomToJsonFlags_None, 0); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1518 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1519 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1520 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1521 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1522 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1523 DcmTag key(tag.GetGroup(), tag.GetElement()); |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1524 return GetDcmtkObjectConst().getDataset()->tagExists(key); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1525 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1526 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1527 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1528 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1529 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1530 if (pdf.size() < 5 || // (*) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1531 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1532 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1533 throw OrthancException(ErrorCode_BadFileFormat, "Not a PDF file"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1534 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1535 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1536 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1537 |
|
4884
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1538 // In Orthanc <= 1.9.7, the "Modality" would have always be overwritten as "OT" |
|
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1539 // https://groups.google.com/g/orthanc-users/c/eNSddNrQDtM/m/wc1HahimAAAJ |
|
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1540 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1541 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
|
4884
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1542 SetIfAbsent(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
|
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1543 SetIfAbsent(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
|
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1544 SetIfAbsent(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), MIME_PDF); |
|
d7d5d63985c8
allow custom value for "Modality" in /tools/create-dicom for PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4870
diff
changeset
|
1545 //SetIfAbsent(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1546 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1547 std::unique_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1548 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1549 size_t s = pdf.size(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1550 if (s & 1) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1551 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1552 // The size of the buffer must be even |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1553 s += 1; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1554 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1555 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1556 Uint8* bytes = NULL; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1557 OFCondition result = element->createUint8Array(s, bytes); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1558 if (!result.good() || bytes == NULL) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1559 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1560 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1561 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1562 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1563 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1564 bytes[s - 1] = 0; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1565 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1566 memcpy(bytes, pdf.c_str(), pdf.size()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1567 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1568 DcmPolymorphOBOW* obj = element.release(); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1569 result = GetDcmtkObject().getDataset()->insert(obj); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1570 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1571 if (!result.good()) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1572 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1573 delete obj; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1574 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1575 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1576 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1577 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1578 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1579 bool ParsedDicomFile::ExtractPdf(std::string& pdf) const |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1580 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1581 std::string sop, mime; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1582 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1583 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1584 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1585 sop != UID_EncapsulatedPDFStorage || |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1586 mime != MIME_PDF) |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1587 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1588 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1589 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1590 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1591 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1592 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1593 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1594 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1595 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1596 // Strip the possible pad byte at the end of file, because the |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1597 // encapsulated documents must always have an even length. The PDF |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1598 // format expects files to end with %%EOF followed by CR/LF. If |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1599 // the last character of the file is not a CR or LF, we assume it |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1600 // is a pad byte and remove it. |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1601 if (pdf.size() > 0) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1602 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1603 char last = *pdf.rbegin(); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1604 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1605 if (last != 10 && last != 13) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1606 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1607 pdf.resize(pdf.size() - 1); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1608 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1609 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1610 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1611 return true; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1612 } |
|
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1613 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1614 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1615 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1616 DicomFromJsonFlags flags, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1617 const std::string& privateCreator) |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1618 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1619 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1620 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1621 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1622 std::unique_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1623 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding())); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1624 |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1625 const Json::Value::Members tags = json.getMemberNames(); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1626 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1627 for (size_t i = 0; i < tags.size(); i++) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1628 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1629 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1630 const Json::Value& value = json[tags[i]]; |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1631 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1632 if (tag == DICOM_TAG_PIXEL_DATA || |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1633 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1634 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1635 if (value.type() != Json::stringValue) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1636 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1637 throw OrthancException(ErrorCode_BadRequest); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1638 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1639 else |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1640 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1641 result->EmbedContent(value.asString()); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1642 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1643 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1644 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1645 { |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1646 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent, privateCreator); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1647 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1648 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1649 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1650 return result.release(); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1651 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1652 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1653 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1654 void ParsedDicomFile::GetRawFrame(std::string& target, |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1655 MimeType& mime, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1656 unsigned int frameId) const |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1657 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1658 if (pimpl_->frameIndex_.get() == NULL) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1659 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1660 assert(pimpl_->file_ != NULL && |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1661 GetDcmtkObjectConst().getDataset() != NULL); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1662 pimpl_->frameIndex_.reset(new DicomFrameIndex(*GetDcmtkObjectConst().getDataset())); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1663 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1664 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1665 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1666 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1667 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1668 switch (transferSyntax) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1669 { |
|
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1670 case EXS_JPEGProcess1: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1671 mime = MimeType_Jpeg; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1672 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1673 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1674 case EXS_JPEG2000LosslessOnly: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1675 case EXS_JPEG2000: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1676 mime = MimeType_Jpeg2000; |
| 2016 | 1677 break; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1678 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1679 default: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1680 mime = MimeType_Binary; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1681 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1682 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1683 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1684 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1685 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1686 void ParsedDicomFile::InvalidateCache() |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1687 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1688 pimpl_->frameIndex_.reset(NULL); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1689 } |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1690 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1691 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1692 unsigned int ParsedDicomFile::GetFramesCount() const |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1693 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1694 assert(pimpl_->file_ != NULL && |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1695 GetDcmtkObjectConst().getDataset() != NULL); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1696 return DicomFrameIndex::GetFramesCount(*GetDcmtkObjectConst().getDataset()); |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1697 } |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1698 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1699 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1700 void ParsedDicomFile::ChangeEncoding(Encoding target) |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1701 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1702 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1703 Encoding source = DetectEncoding(hasCodeExtensions); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1704 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1705 if (source != target) // Avoid unnecessary conversion |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1706 { |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1707 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1708 FromDcmtkBridge::ChangeStringEncoding(*GetDcmtkObject().getDataset(), source, hasCodeExtensions, target); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1709 } |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1710 } |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1711 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1712 |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1713 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1714 unsigned int maxTagLength) const |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1715 { |
|
4137
6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4136
diff
changeset
|
1716 std::set<DicomTag> ignoreTagLength; |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1717 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1718 maxTagLength, ignoreTagLength); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1719 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1720 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1721 |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1722 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1723 unsigned int maxTagLength, |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1724 const std::set<DicomTag>& ignoreTagLength) const |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1725 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1726 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1727 maxTagLength, ignoreTagLength); |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1728 } |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1729 |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1730 |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1731 bool ParsedDicomFile::LookupTransferSyntax(DicomTransferSyntax& result) const |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1732 { |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1733 return FromDcmtkBridge::LookupOrthancTransferSyntax(result, GetDcmtkObjectConst()); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1734 } |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1735 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1736 |
|
e002430baa41
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1737 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
|
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Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
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|
1738 { |
|
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|
1739 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1740 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
|
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|
1741 |
|
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|
1742 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
|
2281
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|
1743 |
|
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|
1744 const char *c = NULL; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1745 if (dataset.findAndGetString(k, c).good() && |
|
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Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
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|
1746 c != NULL) |
|
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|
1747 { |
|
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|
1748 result = StringToPhotometricInterpretation(c); |
|
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|
1749 return true; |
|
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|
1750 } |
|
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|
1751 else |
|
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|
1752 { |
|
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|
1753 return false; |
|
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|
1754 } |
|
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|
1755 } |
|
2499
83b8b6743531
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|
1756 |
|
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|
1757 |
|
5303
9504de20d43d
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Alain Mazy <am@osimis.io>
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|
1758 void ParsedDicomFile::Apply(ITagVisitor& visitor, bool injectEmptyPixelData) const |
|
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|
1759 { |
|
5303
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|
1760 DcmItem& dataset = *GetDcmtkObjectConst().getDataset(); |
|
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Alain Mazy <am@osimis.io>
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1761 |
|
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|
1762 if (injectEmptyPixelData) |
|
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|
1763 { |
|
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|
1764 DcmTag emptyPixelData(DCM_PixelData, EVR_PixelData); |
|
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|
1765 if (!dataset.insertEmptyElement(emptyPixelData, false).good()) |
|
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|
1766 { |
|
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|
1767 throw OrthancException(ErrorCode_InternalError); |
|
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|
1768 } |
|
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|
1769 } |
|
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|
1770 |
|
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|
1771 FromDcmtkBridge::Apply(*GetDcmtkObjectConst().getDataset(), visitor, GetDefaultDicomEncoding()); |
|
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1772 } |
|
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|
1773 |
|
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|
1774 |
|
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1775 ImageAccessor* ParsedDicomFile::DecodeFrame(unsigned int frame) const |
|
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1776 { |
|
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1777 if (GetDcmtkObjectConst().getDataset() == NULL) |
|
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1778 { |
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1779 throw OrthancException(ErrorCode_InternalError); |
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1780 } |
|
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1781 else |
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1782 { |
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1783 return DicomImageDecoder::Decode(*GetDcmtkObjectConst().getDataset(), frame); |
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1784 } |
|
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1785 } |
|
4273
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1786 |
|
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1787 |
|
4683
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|
1788 static bool HasGenericGroupLength(const DicomPath& path) |
|
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1789 { |
|
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1790 for (size_t i = 0; i < path.GetPrefixLength(); i++) |
|
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|
1791 { |
|
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1792 if (path.GetPrefixTag(i).GetElement() == 0x0000) |
|
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1793 { |
|
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1794 return true; |
|
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1795 } |
|
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1796 } |
|
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1797 |
|
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1798 return (path.GetFinalTag().GetElement() == 0x0000); |
|
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1799 } |
|
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1800 |
|
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1801 |
|
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1802 void ParsedDicomFile::ReplacePath(const DicomPath& path, |
|
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|
1803 const Json::Value& value, |
|
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1804 bool decodeDataUriScheme, |
|
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1805 DicomReplaceMode mode, |
|
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1806 const std::string& privateCreator) |
|
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1807 { |
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1808 if (HasGenericGroupLength(path)) |
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1809 { |
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1810 // Prevent manually modifying generic group length tags: This is |
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1811 // handled by DCMTK serialization |
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1812 return; |
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1813 } |
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1814 else if (path.GetPrefixLength() == 0) |
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1815 { |
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1816 Replace(path.GetFinalTag(), value, decodeDataUriScheme, mode, privateCreator); |
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1817 } |
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1818 else |
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1819 { |
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1820 InvalidateCache(); |
|
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1821 |
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1822 bool hasCodeExtensions; |
|
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1823 Encoding encoding = DetectEncoding(hasCodeExtensions); |
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1824 std::unique_ptr<DcmElement> element( |
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1825 FromDcmtkBridge::FromJson(path.GetFinalTag(), value, decodeDataUriScheme, encoding, privateCreator)); |
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1826 |
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1827 FromDcmtkBridge::ReplacePath(*GetDcmtkObject().getDataset(), path, *element, mode); |
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1828 } |
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1829 } |
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1830 |
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1831 |
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1832 void ParsedDicomFile::RemovePath(const DicomPath& path) |
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1833 { |
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1834 InvalidateCache(); |
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1835 FromDcmtkBridge::RemovePath(*GetDcmtkObject().getDataset(), path); |
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1836 } |
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1837 |
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1838 |
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1839 void ParsedDicomFile::ClearPath(const DicomPath& path, |
|
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1840 bool onlyIfExists) |
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1841 { |
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1842 if (HasGenericGroupLength(path)) |
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1843 { |
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1844 // Prevent manually modifying generic group length tags: This is |
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1845 // handled by DCMTK serialization |
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1846 return; |
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1847 } |
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1848 else |
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1849 { |
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1850 InvalidateCache(); |
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1851 FromDcmtkBridge::ClearPath(*GetDcmtkObject().getDataset(), path, onlyIfExists); |
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1852 } |
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1853 } |
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1854 |
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1855 |
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1856 bool ParsedDicomFile::LookupSequenceItem(DicomMap& target, |
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1857 const DicomPath& path, |
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1858 size_t sequenceIndex) const |
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1859 { |
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1860 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
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1861 return FromDcmtkBridge::LookupSequenceItem(target, dataset, path, sequenceIndex); |
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1862 } |
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1863 |
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1864 |
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1865 void ParsedDicomFile::GetDefaultWindowing(double& windowCenter, |
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1866 double& windowWidth, |
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1867 unsigned int frame) const |
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1868 { |
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1869 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
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1870 |
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1871 const char* wc = NULL; |
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1872 const char* ww = NULL; |
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1873 DcmItem *item1 = NULL; |
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1874 DcmItem *item2 = NULL; |
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1875 |
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1876 if (dataset.findAndGetString(DCM_WindowCenter, wc).good() && |
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1877 dataset.findAndGetString(DCM_WindowWidth, ww).good() && |
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1878 wc != NULL && |
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1879 ww != NULL && |
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1880 SerializationToolbox::ParseFirstDouble(windowCenter, wc) && |
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1881 SerializationToolbox::ParseFirstDouble(windowWidth, ww)) |
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1882 { |
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1883 return; // OK |
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1884 } |
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1885 else if (dataset.findAndGetSequenceItem(DCM_PerFrameFunctionalGroupsSequence, item1, frame).good() && |
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1886 item1 != NULL && |
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1887 item1->findAndGetSequenceItem(DCM_FrameVOILUTSequence, item2, 0).good() && |
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1888 item2 != NULL && |
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1889 item2->findAndGetString(DCM_WindowCenter, wc).good() && |
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1890 item2->findAndGetString(DCM_WindowWidth, ww).good() && |
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1891 wc != NULL && |
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1892 ww != NULL && |
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1893 SerializationToolbox::ParseFirstDouble(windowCenter, wc) && |
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1894 SerializationToolbox::ParseFirstDouble(windowWidth, ww)) |
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1895 { |
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1896 // New in Orthanc 1.9.7, to deal with Philips multiframe images |
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1897 // (cf. private mail from Tomas Kenda on 2021-08-17) |
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1898 return; // OK |
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1899 } |
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1900 else |
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1901 { |
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1902 Uint16 bitsStored = 0; |
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1903 if (!dataset.findAndGetUint16(DCM_BitsStored, bitsStored).good() || |
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1904 bitsStored == 0) |
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1905 { |
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1906 bitsStored = 8; // Rough assumption |
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1907 } |
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1908 |
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1909 windowWidth = static_cast<double>(1 << bitsStored); |
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1910 windowCenter = windowWidth / 2.0f; |
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1911 } |
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1912 } |
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1913 |
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1914 |
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1915 void ParsedDicomFile::GetRescale(double& rescaleIntercept, |
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1916 double& rescaleSlope, |
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1917 unsigned int frame) const |
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1918 { |
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1919 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
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1920 |
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1921 const char* sopClassUid = NULL; |
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1922 const char* intercept = NULL; |
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1923 const char* slope = NULL; |
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1924 DcmItem *item1 = NULL; |
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1925 DcmItem *item2 = NULL; |
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1926 |
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1927 if (dataset.findAndGetString(DCM_SOPClassUID, sopClassUid).good() && |
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1928 sopClassUid != NULL && |
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1929 std::string(sopClassUid) == std::string(UID_RTDoseStorage)) |
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1930 { |
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1931 // We must not take the rescale value into account in the case of doses |
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1932 rescaleIntercept = 0; |
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1933 rescaleSlope = 1; |
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1934 } |
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1935 else if (dataset.findAndGetString(DCM_RescaleIntercept, intercept).good() && |
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1936 dataset.findAndGetString(DCM_RescaleSlope, slope).good() && |
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1937 intercept != NULL && |
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1938 slope != NULL && |
| 4781 | 1939 SerializationToolbox::ParseDouble(rescaleIntercept, intercept) && |
| 1940 SerializationToolbox::ParseDouble(rescaleSlope, slope)) | |
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changeset
|
1941 { |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
1942 return; // OK |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
1943 } |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
1944 else if (dataset.findAndGetSequenceItem(DCM_PerFrameFunctionalGroupsSequence, item1, frame).good() && |
|
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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|
1945 item1 != NULL && |
|
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
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|
1946 item1->findAndGetSequenceItem(DCM_PixelValueTransformationSequence, item2, 0).good() && |
|
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
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|
1947 item2 != NULL && |
|
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
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|
1948 item2->findAndGetString(DCM_RescaleIntercept, intercept).good() && |
|
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Support detection of windowing and rescale in Philips multiframe images
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1949 item2->findAndGetString(DCM_RescaleSlope, slope).good() && |
|
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
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|
1950 intercept != NULL && |
|
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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|
1951 slope != NULL && |
| 4781 | 1952 SerializationToolbox::ParseDouble(rescaleIntercept, intercept) && |
| 1953 SerializationToolbox::ParseDouble(rescaleSlope, slope)) | |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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|
1954 { |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
1955 // New in Orthanc 1.9.7, to deal with Philips multiframe images |
|
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Support detection of windowing and rescale in Philips multiframe images
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1956 // (cf. private mail from Tomas Kenda on 2021-08-17) |
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1957 return; // OK |
|
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1958 } |
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1959 else |
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1960 { |
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1961 rescaleIntercept = 0; |
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1962 rescaleSlope = 1; |
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1963 } |
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1964 } |
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1965 |
|
4771
9f207131c7f4
added ParsedDicomFile::LookupSubSequence()
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changeset
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1966 |
|
4947
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added ParsedDicomFile::DecodeAllOverlays()
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changeset
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1967 void ParsedDicomFile::ListOverlays(std::set<uint16_t>& groups) const |
|
4945
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1968 { |
|
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1969 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
|
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1970 |
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1971 // "Repeating Groups shall only be allowed in the even Groups (6000-601E,eeee)" |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1972 // https://dicom.nema.org/medical/dicom/2021e/output/chtml/part05/sect_7.6.html |
|
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changeset
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1973 |
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1974 for (uint16_t group = 0x6000; group <= 0x601e; group += 2) |
|
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1975 { |
|
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1976 if (dataset.tagExists(DcmTagKey(group, 0x0010))) |
|
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1977 { |
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1978 groups.insert(group); |
|
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1979 } |
|
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1980 } |
|
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1981 } |
|
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changeset
|
1982 |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1983 |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1984 static unsigned int Ceiling(unsigned int a, |
|
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added ParsedDicomFile::DecodeOverlay()
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|
1985 unsigned int b) |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1986 { |
|
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changeset
|
1987 if (a % b == 0) |
|
6a59dc426f93
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changeset
|
1988 { |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1989 return a / b; |
|
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1990 } |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1991 else |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1992 { |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1993 return a / b + 1; |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1994 } |
|
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changeset
|
1995 } |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1996 |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1997 |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1998 ImageAccessor* ParsedDicomFile::DecodeOverlay(int& originX, |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
1999 int& originY, |
|
4947
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added ParsedDicomFile::DecodeAllOverlays()
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diff
changeset
|
2000 uint16_t group) const |
|
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changeset
|
2001 { |
|
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added ParsedDicomFile::DecodeOverlay()
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parents:
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diff
changeset
|
2002 // https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.9.2.html |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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changeset
|
2003 |
|
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added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2004 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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changeset
|
2005 |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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changeset
|
2006 Uint16 rows, columns, bitsAllocated, bitPosition; |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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changeset
|
2007 const Sint16* origin = NULL; |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
2008 unsigned long originSize = 0; |
| 4956 | 2009 DcmElement* overlayElement = NULL; |
|
4955
1610e56cadfb
fix ParsedDicomFile::DecodeOverlay() for WebAssembly
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parents:
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diff
changeset
|
2010 Uint8* overlayData = NULL; |
|
4945
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
2011 |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2012 if (dataset.findAndGetUint16(DcmTagKey(group, 0x0010), rows).good() && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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changeset
|
2013 dataset.findAndGetUint16(DcmTagKey(group, 0x0011), columns).good() && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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diff
changeset
|
2014 dataset.findAndGetSint16Array(DcmTagKey(group, 0x0050), origin, &originSize).good() && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2015 origin != NULL && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2016 originSize == 2 && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2017 dataset.findAndGetUint16(DcmTagKey(group, 0x0100), bitsAllocated).good() && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2018 bitsAllocated == 1 && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2019 dataset.findAndGetUint16(DcmTagKey(group, 0x0102), bitPosition).good() && |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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parents:
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diff
changeset
|
2020 bitPosition == 0 && |
| 4956 | 2021 dataset.findAndGetElement(DcmTagKey(group, 0x3000), overlayElement).good() && |
| 2022 overlayElement != NULL && | |
| 2023 overlayElement->getUint8Array(overlayData).good() && | |
|
4945
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parents:
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changeset
|
2024 overlayData != NULL) |
|
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added ParsedDicomFile::DecodeOverlay()
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parents:
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changeset
|
2025 { |
|
4955
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parents:
4947
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changeset
|
2026 /** |
|
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parents:
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changeset
|
2027 * WARNING - It might seem easier to use |
|
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changeset
|
2028 * "dataset.findAndGetUint8Array()" that directly gives the size |
|
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changeset
|
2029 * of the overlay data (using the "count" parameter), instead of |
|
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changeset
|
2030 * "dataset.findAndGetElement()". Unfortunately, this does *not* |
|
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changeset
|
2031 * work with Emscripten/WebAssembly, that reports a "count" that |
|
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changeset
|
2032 * is half the number of bytes, presumably because of |
|
1610e56cadfb
fix ParsedDicomFile::DecodeOverlay() for WebAssembly
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parents:
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changeset
|
2033 * discrepancies in the way sizeof are computed inside DCMTK. |
|
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changeset
|
2034 * The method "getLengthField()" reports the correct number of |
|
1610e56cadfb
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parents:
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changeset
|
2035 * bytes, even if targeting WebAssembly. |
|
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changeset
|
2036 **/ |
|
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changeset
|
2037 |
|
4945
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changeset
|
2038 unsigned int expectedSize = Ceiling(rows * columns, 8); |
| 4956 | 2039 if (overlayElement->getLengthField() < expectedSize) |
|
4945
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
2040 { |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
2041 throw OrthancException(ErrorCode_CorruptedFile, "Overlay doesn't have a valid number of bits"); |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
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changeset
|
2042 } |
|
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changeset
|
2043 |
|
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added ParsedDicomFile::DecodeOverlay()
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changeset
|
2044 originX = origin[1]; |
|
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changeset
|
2045 originY = origin[0]; |
|
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|
2046 |
|
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changeset
|
2047 std::unique_ptr<ImageAccessor> overlay(new Image(Orthanc::PixelFormat_Grayscale8, columns, rows, false)); |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2048 |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2049 unsigned int posBit = 0; |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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4912
diff
changeset
|
2050 for (int y = 0; y < rows; y++) |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2051 { |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2052 uint8_t* target = reinterpret_cast<uint8_t*>(overlay->GetRow(y)); |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2053 |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2054 for (int x = 0; x < columns; x++) |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2055 { |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2056 uint8_t source = overlayData[posBit / 8]; |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2057 uint8_t mask = 1 << (posBit % 8); |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2058 |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2059 *target = ((source & mask) ? 255 : 0); |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2060 |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2061 target++; |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2062 posBit++; |
|
6a59dc426f93
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changeset
|
2063 } |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2064 } |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2065 |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2066 return overlay.release(); |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2067 } |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2068 else |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2069 { |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2070 throw OrthancException(ErrorCode_CorruptedFile, "Invalid overlay"); |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2071 } |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2072 } |
|
6a59dc426f93
added ParsedDicomFile::DecodeOverlay()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2073 |
|
6a59dc426f93
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2074 |
|
4947
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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4945
diff
changeset
|
2075 ImageAccessor* ParsedDicomFile::DecodeAllOverlays(int& originX, |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2076 int& originY) const |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2077 { |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2078 std::set<uint16_t> groups; |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2079 ListOverlays(groups); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2080 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2081 if (groups.empty()) |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2082 { |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2083 originX = 0; |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2084 originY = 0; |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2085 return new Image(PixelFormat_Grayscale8, 0, 0, false); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2086 } |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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4945
diff
changeset
|
2087 else |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2088 { |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2089 std::set<uint16_t>::const_iterator it = groups.begin(); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2090 assert(it != groups.end()); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2091 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2092 std::unique_ptr<ImageAccessor> result(DecodeOverlay(originX, originY, *it)); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2093 assert(result.get() != NULL); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2094 ++it; |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2095 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2096 int right = originX + static_cast<int>(result->GetWidth()); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2097 int bottom = originY + static_cast<int>(result->GetHeight()); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2098 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2099 while (it != groups.end()) |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2100 { |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2101 int ox, oy; |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2102 std::unique_ptr<ImageAccessor> overlay(DecodeOverlay(ox, oy, *it)); |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2103 assert(overlay.get() != NULL); |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2104 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2105 int mergedX = std::min(originX, ox); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2106 int mergedY = std::min(originY, oy); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2107 right = std::max(right, ox + static_cast<int>(overlay->GetWidth())); |
|
dfbe764995cf
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changeset
|
2108 bottom = std::max(bottom, oy + static_cast<int>(overlay->GetHeight())); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2109 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2110 assert(right >= mergedX && bottom >= mergedY); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2111 unsigned int width = static_cast<unsigned int>(right - mergedX); |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2112 unsigned int height = static_cast<unsigned int>(bottom - mergedY); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2113 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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4945
diff
changeset
|
2114 std::unique_ptr<ImageAccessor> merged(new Image(PixelFormat_Grayscale8, width, height, false)); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2115 ImageProcessing::Set(*merged, 0); |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2116 |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2117 ImageAccessor a; |
|
dfbe764995cf
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2118 merged->GetRegion(a, originX - mergedX, originY - mergedY, result->GetWidth(), result->GetHeight()); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2119 ImageProcessing::Maximum(a, *result); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2120 |
|
dfbe764995cf
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changeset
|
2121 merged->GetRegion(a, ox - mergedX, oy - mergedY, overlay->GetWidth(), overlay->GetHeight()); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2122 ImageProcessing::Maximum(a, *overlay); |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2123 |
|
dfbe764995cf
added ParsedDicomFile::DecodeAllOverlays()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2124 originX = mergedX; |
|
dfbe764995cf
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changeset
|
2125 originY = mergedY; |
|
dfbe764995cf
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changeset
|
2126 result.reset(merged.release()); |
|
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changeset
|
2127 |
|
dfbe764995cf
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diff
changeset
|
2128 ++it; |
|
dfbe764995cf
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changeset
|
2129 } |
|
dfbe764995cf
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changeset
|
2130 |
|
dfbe764995cf
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changeset
|
2131 return result.release(); |
|
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changeset
|
2132 } |
|
dfbe764995cf
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changeset
|
2133 } |
|
dfbe764995cf
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changeset
|
2134 |
|
dfbe764995cf
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changeset
|
2135 |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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changeset
|
2136 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
|
0034f855c023
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2137 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore |
|
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
2138 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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changeset
|
2139 DicomToJsonFormat format, |
|
0034f855c023
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changeset
|
2140 DicomToJsonFlags flags, |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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changeset
|
2141 unsigned int maxStringLength) |
|
0034f855c023
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changeset
|
2142 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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changeset
|
2143 return const_cast<const ParsedDicomFile&>(*this).DatasetToJson(target, format, flags, maxStringLength); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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changeset
|
2144 } |
|
0034f855c023
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changeset
|
2145 |
|
0034f855c023
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changeset
|
2146 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
|
0034f855c023
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changeset
|
2147 { |
|
0034f855c023
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changeset
|
2148 return const_cast<ParsedDicomFile&>(*this).GetDcmtkObject(); |
|
0034f855c023
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changeset
|
2149 } |
|
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2150 |
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2151 void ParsedDicomFile::Apply(ITagVisitor& visitor) |
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2152 { |
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2153 const_cast<const ParsedDicomFile&>(*this).Apply(visitor); |
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2154 } |
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2155 |
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2156 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) |
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2157 { |
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2158 return const_cast<const ParsedDicomFile&>(*this).Clone(keepSopInstanceUid); |
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2159 } |
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2160 |
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2161 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
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2162 { |
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2163 return const_cast<const ParsedDicomFile&>(*this).LookupTransferSyntax(result); |
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2164 } |
|
4507
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2165 |
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2166 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) const |
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2167 { |
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2168 DicomTransferSyntax s; |
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2169 if (LookupTransferSyntax(s)) |
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2170 { |
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2171 result = GetTransferSyntaxUid(s); |
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2172 return true; |
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2173 } |
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2174 else |
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2175 { |
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2176 return false; |
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2177 } |
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2178 } |
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4273
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2179 |
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2180 bool ParsedDicomFile::GetTagValue(std::string& value, |
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2181 const DicomTag& tag) |
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2182 { |
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2183 return const_cast<const ParsedDicomFile&>(*this).GetTagValue(value, tag); |
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2184 } |
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2185 #endif |
| 790 | 2186 } |