annotate OrthancServer/ParsedDicomFile.cpp @ 1980:ebce5f456b8e

new error code: ErrorCode_AlreadyExistingTag
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 22 Apr 2016 08:57:33 +0200
parents 9e0f408db796
children 4b545a8b1f95
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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Sebastien Jodogne <s.jodogne@gmail.com>
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33
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34 /*=========================================================================
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35
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36 This file is based on portions of the following project:
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37
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38 Program: GDCM (Grassroots DICOM). A DICOM library
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39 Module: http://gdcm.sourceforge.net/Copyright.html
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40
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41 Copyright (c) 2006-2011 Mathieu Malaterre
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42 Copyright (c) 1993-2005 CREATIS
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43 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
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44 All rights reserved.
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45
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46 Redistribution and use in source and binary forms, with or without
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47 modification, are permitted provided that the following conditions are met:
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48
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49 * Redistributions of source code must retain the above copyright notice,
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50 this list of conditions and the following disclaimer.
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51
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52 * Redistributions in binary form must reproduce the above copyright notice,
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53 this list of conditions and the following disclaimer in the documentation
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54 and/or other materials provided with the distribution.
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55
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56 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
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57 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
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58 endorse or promote products derived from this software without specific
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59 prior written permission.
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60
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61 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
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62 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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63 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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64 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
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65 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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66 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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67 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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68 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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69 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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70 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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71
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72 =========================================================================*/
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73
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74
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75 #include "PrecompiledHeadersServer.h"
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76
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77 #ifndef NOMINMAX
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78 #define NOMINMAX
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79 #endif
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80
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81 #include "ParsedDicomFile.h"
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82
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83 #include "OrthancInitialization.h"
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84 #include "ServerToolbox.h"
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85 #include "FromDcmtkBridge.h"
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86 #include "ToDcmtkBridge.h"
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87 #include "Internals/DicomFrameIndex.h"
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88 #include "../Core/Images/JpegReader.h"
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89 #include "../Core/Images/PngReader.h"
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90 #include "../Core/Logging.h"
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91 #include "../Core/OrthancException.h"
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92 #include "../Core/Toolbox.h"
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93 #include "../Core/Uuid.h"
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94
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95 #include <list>
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96 #include <limits>
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97
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98 #include <boost/lexical_cast.hpp>
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99
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100 #include <dcmtk/dcmdata/dcchrstr.h>
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101 #include <dcmtk/dcmdata/dcdicent.h>
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102 #include <dcmtk/dcmdata/dcdict.h>
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103 #include <dcmtk/dcmdata/dcfilefo.h>
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104 #include <dcmtk/dcmdata/dcuid.h>
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105 #include <dcmtk/dcmdata/dcmetinf.h>
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106 #include <dcmtk/dcmdata/dcdeftag.h>
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107
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108 #include <dcmtk/dcmdata/dcvrae.h>
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109 #include <dcmtk/dcmdata/dcvras.h>
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110 #include <dcmtk/dcmdata/dcvrcs.h>
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111 #include <dcmtk/dcmdata/dcvrda.h>
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112 #include <dcmtk/dcmdata/dcvrds.h>
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113 #include <dcmtk/dcmdata/dcvrdt.h>
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114 #include <dcmtk/dcmdata/dcvrfd.h>
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115 #include <dcmtk/dcmdata/dcvrfl.h>
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116 #include <dcmtk/dcmdata/dcvris.h>
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117 #include <dcmtk/dcmdata/dcvrlo.h>
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118 #include <dcmtk/dcmdata/dcvrlt.h>
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119 #include <dcmtk/dcmdata/dcvrpn.h>
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120 #include <dcmtk/dcmdata/dcvrsh.h>
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121 #include <dcmtk/dcmdata/dcvrsl.h>
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122 #include <dcmtk/dcmdata/dcvrss.h>
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123 #include <dcmtk/dcmdata/dcvrst.h>
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124 #include <dcmtk/dcmdata/dcvrtm.h>
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125 #include <dcmtk/dcmdata/dcvrui.h>
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126 #include <dcmtk/dcmdata/dcvrul.h>
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127 #include <dcmtk/dcmdata/dcvrus.h>
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128 #include <dcmtk/dcmdata/dcvrut.h>
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129 #include <dcmtk/dcmdata/dcpixel.h>
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130 #include <dcmtk/dcmdata/dcpixseq.h>
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131 #include <dcmtk/dcmdata/dcpxitem.h>
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132
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133
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134 #include <boost/math/special_functions/round.hpp>
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135 #include <dcmtk/dcmdata/dcostrmb.h>
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136 #include <boost/algorithm/string/predicate.hpp>
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137
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138
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139 #if DCMTK_VERSION_NUMBER <= 360
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140 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax
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141 #endif
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142
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143
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144 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream";
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145
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146
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147
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148 namespace Orthanc
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149 {
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150 struct ParsedDicomFile::PImpl
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151 {
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152 std::auto_ptr<DcmFileFormat> file_;
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153 std::auto_ptr<DicomFrameIndex> frameIndex_;
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154 };
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155
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156
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157 static void SendPathValueForDictionary(RestApiOutput& output,
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158 DcmItem& dicom)
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159 {
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160 Json::Value v = Json::arrayValue;
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161
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162 for (unsigned long i = 0; i < dicom.card(); i++)
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163 {
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164 DcmElement* element = dicom.getElement(i);
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165 if (element)
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166 {
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167 char buf[16];
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168 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag());
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169 v.append(buf);
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170 }
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171 }
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172
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173 output.AnswerJson(v);
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174 }
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175
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176 static inline uint16_t GetCharValue(char c)
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177 {
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178 if (c >= '0' && c <= '9')
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179 return c - '0';
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180 else if (c >= 'a' && c <= 'f')
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181 return c - 'a' + 10;
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182 else if (c >= 'A' && c <= 'F')
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183 return c - 'A' + 10;
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184 else
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185 return 0;
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186 }
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187
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188 static inline uint16_t GetTagValue(const char* c)
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189 {
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190 return ((GetCharValue(c[0]) << 12) +
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191 (GetCharValue(c[1]) << 8) +
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192 (GetCharValue(c[2]) << 4) +
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193 GetCharValue(c[3]));
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194 }
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195
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196 static void ParseTagAndGroup(DcmTagKey& key,
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197 const std::string& tag)
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198 {
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199 DicomTag t = FromDcmtkBridge::ParseTag(tag);
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200 key = DcmTagKey(t.GetGroup(), t.GetElement());
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201 }
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202
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203
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204 static void SendSequence(RestApiOutput& output,
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205 DcmSequenceOfItems& sequence)
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206 {
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207 // This element is a sequence
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208 Json::Value v = Json::arrayValue;
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209
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210 for (unsigned long i = 0; i < sequence.card(); i++)
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211 {
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212 v.append(boost::lexical_cast<std::string>(i));
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213 }
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214
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215 output.AnswerJson(v);
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216 }
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217
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218
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219 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData,
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220 E_TransferSyntax transferSyntax)
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221 {
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222 DcmPixelSequence* pixelSequence = NULL;
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223 if (pixelData.getEncapsulatedRepresentation
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224 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
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225 {
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226 return pixelSequence->card();
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227 }
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228 else
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229 {
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230 return 1;
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231 }
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232 }
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233
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234
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235 namespace
790
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236 {
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237 class DicomFieldStream : public IHttpStreamAnswer
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238 {
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239 private:
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240 DcmElement& element_;
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241 uint32_t length_;
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242 uint32_t offset_;
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243 std::string chunk_;
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244 size_t chunkSize_;
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245
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246 public:
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247 DicomFieldStream(DcmElement& element,
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248 E_TransferSyntax transferSyntax) :
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249 element_(element),
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250 length_(element.getLength(transferSyntax)),
1616
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251 offset_(0),
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252 chunkSize_(0)
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253 {
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254 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB
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255 chunk_.resize(CHUNK_SIZE);
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256 }
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257
1523
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258 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/,
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259 bool /*deflateAllowed*/)
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260 {
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261 // No support for compression
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262 return HttpCompression_None;
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263 }
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264
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265 virtual bool HasContentFilename(std::string& filename)
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266 {
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267 return false;
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268 }
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269
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diff changeset
270 virtual std::string GetContentType()
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271 {
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272 return "";
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diff changeset
273 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
275 virtual uint64_t GetContentLength()
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
277 return length_;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
279
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
280 virtual bool ReadNextChunk()
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 {
1520
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1519
diff changeset
282 assert(offset_ <= length_);
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
283
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
284 if (offset_ == length_)
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
285 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
286 return false;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
287 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
288 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
289 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
290 if (length_ - offset_ < chunk_.size())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
291 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
292 chunkSize_ = length_ - offset_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
293 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
294 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
295 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
296 chunkSize_ = chunk_.size();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
297 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
298
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
299 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
300
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
301 offset_ += chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
302
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
303 if (!cond.good())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
304 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
305 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
306 throw OrthancException(ErrorCode_InternalError);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
307 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
308
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
309 return true;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
310 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
312
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
313 virtual const char *GetChunkContent()
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
314 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
315 return chunk_.c_str();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
316 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
317
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
318 virtual size_t GetChunkSize()
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
319 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
320 return chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
321 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
322 };
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 static bool AnswerPixelData(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 E_TransferSyntax transferSyntax,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 const std::string* blockUri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(),
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 DICOM_TAG_PIXEL_DATA.GetElement());
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 DcmElement *element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 if (!dicom.findAndGetElement(k, element).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 element == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 if (blockUri == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 {
1913
41e402cd7b3a do not generate RC files for non-Windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
346 // The user asks how many blocks are present in this pixel data
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 Json::Value result(Json::arrayValue);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 for (unsigned int i = 0; i < blocks; i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 result.append(boost::lexical_cast<std::string>(i));
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 output.AnswerJson(result);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 if (block < GetPixelDataBlockCount(pixelData, transferSyntax))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 DcmPixelSequence* pixelSequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 if (pixelData.getEncapsulatedRepresentation
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 // This is the case for JPEG transfer syntaxes
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 if (block < pixelSequence->card())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 DcmPixelItem* pixelItem = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 if (pixelItem->getLength() == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 Uint8* buffer = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 if (pixelItem->getUint8Array(buffer).good() && buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 // This is the case for raw, uncompressed image buffers
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 assert(*blockUri == "0");
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
393 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
394 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 // The URI entered by the user is not a number
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 catch (std::bad_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 // This should never happen
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 static void SendPathValueForLeaf(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 const std::string& tag,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 E_TransferSyntax transferSyntax)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 ParseTagAndGroup(k, tag);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 DcmSequenceOfItems* sequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 if (dicom.findAndGetSequence(k, sequence).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 sequence != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 sequence->getVR() == EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 SendSequence(output, *sequence);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 DcmElement* element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 if (dicom.findAndGetElement(k, element).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 element != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 element->getVR() != EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
435 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
436 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 void ParsedDicomFile::SendPathValue(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 const UriComponents& uri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
443 DcmItem* dicom = pimpl_->file_->getDataset();
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
444 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer();
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 // Special case: Accessing the pixel data
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 if (uri.size() == 1 ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 uri.size() == 2)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 DcmTagKey tag;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 ParseTagAndGroup(tag, uri[0]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 // Go down in the tag hierarchy according to the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 for (size_t pos = 0; pos < uri.size() / 2; pos++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 size_t index;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 DcmItem *child = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 ParseTagAndGroup(k, uri[2 * pos]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 if (!dicom->findAndGetSequenceItem(k, child, index).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 child == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 dicom = child;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 // We have reached the end of the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 if (uri.size() % 2 == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 SendPathValueForDictionary(output, *dicom);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 void ParsedDicomFile::Remove(const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
500 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
501
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 DcmTagKey key(tag.GetGroup(), tag.GetElement());
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
503 DcmElement* element = pimpl_->file_->getDataset()->remove(key);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 if (element != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 delete element;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
512 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
514 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
515
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
516 DcmDataset& dataset = *pimpl_->file_->getDataset();
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
517
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
518 // Loop over the dataset to detect its private tags
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 typedef std::list<DcmElement*> Tags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 Tags privateTags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 for (unsigned long i = 0; i < dataset.card(); i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 DcmElement* element = dataset.getElement(i);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 DcmTag tag(element->getTag());
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
526
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
527 // Is this a private tag?
1694
06d579e82bb8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
528 if (tag.isPrivate())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
530 bool remove = true;
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
531
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
532 // Check whether this private tag is to be kept
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
533 if (toKeep != NULL)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
534 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
535 DicomTag tmp = FromDcmtkBridge::Convert(tag);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
536 if (toKeep->find(tmp) != toKeep->end())
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
537 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
538 remove = false; // Keep it
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
539 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
540 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
541
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
542 if (remove)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
543 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
544 privateTags.push_back(element);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
545 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
549 // Loop over the detected private tags to remove them
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 for (Tags::iterator it = privateTags.begin();
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 it != privateTags.end(); ++it)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 DcmElement* tmp = dataset.remove(*it);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 if (tmp != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 delete tmp;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
562 static void InsertInternal(DcmDataset& dicom,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
563 DcmElement* element)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
565 OFCondition cond = dicom.insert(element, false, false);
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
566 if (!cond.good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 // This field already exists
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
569 delete element;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 throw OrthancException(ErrorCode_InternalError);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
575 void ParsedDicomFile::Insert(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
576 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
577 bool decodeDataUriScheme)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578 {
1980
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
579 if (pimpl_->file_->getDataset()->tagExists(ToDcmtkBridge::Convert(tag)))
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
580 {
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
581 throw OrthancException(ErrorCode_AlreadyExistingTag);
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
582 }
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
583
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
584 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
585
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
586 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding()));
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
587 InsertInternal(*pimpl_->file_->getDataset(), element.release());
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
588 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
589
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
590
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
591 static bool IsReplaceAllowed(DcmDataset& dicom,
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
592 const DcmTagKey& tag,
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
593 DicomReplaceMode mode)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
594 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
595 if (dicom.findAndDeleteElement(tag).good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
597 // This tag was existing, it has been deleted
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
598 return true;
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
599 }
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
600 else
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
601 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
602 // This tag was absent, act wrt. the specified "mode"
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 switch (mode)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 case DicomReplaceMode_InsertIfAbsent:
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
606 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608 case DicomReplaceMode_ThrowIfAbsent:
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 throw OrthancException(ErrorCode_InexistentItem);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 case DicomReplaceMode_IgnoreIfAbsent:
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
612 return false;
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
613
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
614 default:
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
615 throw OrthancException(ErrorCode_ParameterOutOfRange);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
618 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
619
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
620
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
621 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
622 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
623 bool decodeDataUriScheme)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
624 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
625 if (tag != DICOM_TAG_SOP_CLASS_UID &&
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
626 tag != DICOM_TAG_SOP_INSTANCE_UID)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
628 return;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
630
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
631 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
632 const std::string* decoded = &utf8Value;
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
633
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
634 if (decodeDataUriScheme &&
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
635 boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
636 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
637 std::string mime;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
638 Toolbox::DecodeDataUriScheme(mime, binary, utf8Value);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
639 decoded = &binary;
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
640 }
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
641 else
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
642 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
643 Encoding encoding = GetEncoding();
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
644 if (GetEncoding() != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
645 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
646 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding);
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
647 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
648 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
649 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 /**
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652 * dcmodify will automatically correct 'Media Storage SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
653 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
654 * you make changes to the related tags in the dataset ('SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
655 * UID' and 'SOP Instance UID') via insert or modify mode
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 * options. You can disable this behaviour by using the -nmu
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
657 * option.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
658 **/
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
660 if (tag == DICOM_TAG_SOP_CLASS_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
661 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
662 Replace(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded, DicomReplaceMode_InsertIfAbsent);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
663 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
664
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
665 if (tag == DICOM_TAG_SOP_INSTANCE_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
666 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
667 Replace(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded, DicomReplaceMode_InsertIfAbsent);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
668 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
669 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
670
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
671
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
672 void ParsedDicomFile::Replace(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
673 const std::string& utf8Value,
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
674 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
675 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
676 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
677
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
678 std::auto_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag));
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
679 FromDcmtkBridge::FillElementWithString(*element, tag, utf8Value, false, GetEncoding());
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
680
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
681 DcmDataset& dicom = *pimpl_->file_->getDataset();
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
682 if (IsReplaceAllowed(dicom, element->getTag(), mode))
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
683 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
684 // Either the tag was previously existing, or the replace mode
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
685 // was set to "InsertIfAbsent"
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
686 InsertInternal(dicom, element.release());
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
687 UpdateStorageUid(tag, utf8Value, false);
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
688 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
689 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
690
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
691
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
692 void ParsedDicomFile::Replace(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
693 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
694 bool decodeDataUriScheme,
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
695 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
696 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
697 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
698
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
699 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding()));
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
700
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
701 DcmDataset& dicom = *pimpl_->file_->getDataset();
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
702 if (IsReplaceAllowed(dicom, element->getTag(), mode))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
703 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
704 // Either the tag was previously existing, or the replace mode
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
705 // was set to "InsertIfAbsent"
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
706 InsertInternal(dicom, element.release());
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
707
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
708 if (tag == DICOM_TAG_SOP_CLASS_UID ||
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
709 tag == DICOM_TAG_SOP_INSTANCE_UID)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
710 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
711 if (value.type() != Json::stringValue)
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
712 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
713 throw OrthancException(ErrorCode_BadParameterType);
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
714 }
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
715
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
716 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
717 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
718 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
719 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
720
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
721
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
722 void ParsedDicomFile::Answer(RestApiOutput& output)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
723 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
724 std::string serialized;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
725 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *pimpl_->file_->getDataset()))
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
726 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
727 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
728 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
729 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
730
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
731
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
732
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
733 bool ParsedDicomFile::GetTagValue(std::string& value,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
734 const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
735 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
736 DcmTagKey k(tag.GetGroup(), tag.GetElement());
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
737 DcmDataset& dataset = *pimpl_->file_->getDataset();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
738
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
739 if (tag.IsPrivate() ||
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1641
diff changeset
740 FromDcmtkBridge::IsUnknownTag(tag) ||
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
741 tag == DICOM_TAG_PIXEL_DATA ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
742 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
743 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
744 const Uint8* data = NULL; // This is freed in the destructor of the dataset
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
745 long unsigned int count = 0;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
746
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
747 if (dataset.findAndGetUint8Array(k, data, &count).good())
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
748 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
749 if (count > 0)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
750 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
751 assert(data != NULL);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
752 value.assign(reinterpret_cast<const char*>(data), count);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
753 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
754 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
755 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
756 value.clear();
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
757 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
758
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
759 return true;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
760 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
761 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
762 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
763 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
764 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
765 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
766 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
767 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
768 DcmElement* element = NULL;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
769 if (!dataset.findAndGetElement(k, element).good() ||
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
770 element == NULL)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
771 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
772 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
773 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
774
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
775 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
776 (*element, DicomToJsonFlags_Default,
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
777 ORTHANC_MAXIMUM_TAG_LENGTH, GetEncoding()));
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
778
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
779 if (v.get() == NULL ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
780 v->IsNull())
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
781 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
782 value = "";
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
783 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
784 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
785 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
786 // TODO v->IsBinary()
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
787 value = v->GetContent();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
788 }
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
789
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
790 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
791 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
792 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
793
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
794
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
795 DicomInstanceHasher ParsedDicomFile::GetHasher()
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
796 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
797 std::string patientId, studyUid, seriesUid, instanceUid;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
798
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
799 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
800 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
802 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
803 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
804 throw OrthancException(ErrorCode_BadFileFormat);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
805 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
806
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
807 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
808 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
809
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
810
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
811 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
812 {
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
813 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *pimpl_->file_->getDataset());
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
814 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
815
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
816
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
817 void ParsedDicomFile::SaveToFile(const std::string& path)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
818 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
819 // TODO Avoid using a temporary memory buffer, write directly on disk
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
820 std::string content;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
821 SaveToMemoryBuffer(content);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
822 Toolbox::WriteFile(content, path);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
823 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
824
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
825
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
826 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
827 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
828 pimpl_->file_.reset(new DcmFileFormat);
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
829
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
830 if (createIdentifiers)
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
831 {
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
832 Replace(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
833 Replace(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
834 Replace(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
835 Replace(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
836 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
837 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
838
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
839
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
840 ParsedDicomFile::ParsedDicomFile(const DicomMap& map) : pimpl_(new PImpl)
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
841 {
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
842 std::auto_ptr<DcmDataset> dataset(ToDcmtkBridge::Convert(map));
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
843
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
844 // NOTE: This implies an unnecessary memory copy of the dataset, but no way to get around
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
845 // http://support.dcmtk.org/redmine/issues/544
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
846 std::auto_ptr<DcmFileFormat> fileFormat(new DcmFileFormat(dataset.get()));
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
847
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
848 pimpl_->file_.reset(fileFormat.release());
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
849 }
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
850
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
851
1800
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
852 ParsedDicomFile::ParsedDicomFile(const void* content,
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
853 size_t size) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
854 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
855 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
856 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
857
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
858 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
859 {
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
860 if (content.size() == 0)
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
861 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
862 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
863 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
864 else
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
865 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
866 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size()));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
867 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
868 }
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
869
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
870
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
871 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other) :
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
872 pimpl_(new PImpl)
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
873 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
874 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.pimpl_->file_->clone()));
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
875
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
876 // Create a new instance-level identifier
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
877 Replace(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
878 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
879
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
880
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
881 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
882 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
883 pimpl_->file_.reset(new DcmFileFormat(&dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
884 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
885
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
886
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
887 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
888 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
889 pimpl_->file_.reset(new DcmFileFormat(dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
890 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
891
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
892
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
893 ParsedDicomFile::~ParsedDicomFile()
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
894 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
895 delete pimpl_;
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
896 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
897
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
898
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
899 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
900 {
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
901 return *pimpl_->file_.get();
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
902 }
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
903
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
904
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
905 ParsedDicomFile* ParsedDicomFile::Clone()
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
906 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
907 return new ParsedDicomFile(*this);
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
908 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
909
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
910
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
911 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme)
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
912 {
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
913 std::string mime, content;
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
914 Toolbox::DecodeDataUriScheme(mime, content, dataUriScheme);
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
915 Toolbox::ToLowerCase(mime);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
916
1781
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
917 if (mime == "image/png" ||
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
918 mime == "image/jpeg")
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
919 {
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
920 EmbedImage(mime, content);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
921 }
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
922 else if (mime == "application/pdf")
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
923 {
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
924 EmbedPdf(content);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
925 }
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
926 else
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
927 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
928 LOG(ERROR) << "Unsupported MIME type for the content of a new DICOM file: " << mime;
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
929 throw OrthancException(ErrorCode_NotImplemented);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
930 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
931 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
932
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
933
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
934 void ParsedDicomFile::EmbedImage(const std::string& mime,
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
935 const std::string& content)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
936 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
937 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
938
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
939 if (mime == "image/png")
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
940 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
941 PngReader reader;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
942 reader.ReadFromMemory(content);
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
943 EmbedImage(reader);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
944 }
1781
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
945 else if (mime == "image/jpeg")
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
946 {
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
947 JpegReader reader;
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
948 reader.ReadFromMemory(content);
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
949 EmbedImage(reader);
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
950 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
951 else
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
952 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
953 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
954 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
955 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
956
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
957
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
958 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
959 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
960 if (accessor.GetFormat() != PixelFormat_Grayscale8 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
961 accessor.GetFormat() != PixelFormat_Grayscale16 &&
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
962 accessor.GetFormat() != PixelFormat_SignedGrayscale16 &&
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
963 accessor.GetFormat() != PixelFormat_RGB24 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
964 accessor.GetFormat() != PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
965 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
966 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
967 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
968
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
969 if (accessor.GetFormat() == PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
970 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
971 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
972 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
973
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
974 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
975
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
976 Remove(DICOM_TAG_PIXEL_DATA);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
977 Replace(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth()));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
978 Replace(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight()));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
979 Replace(DICOM_TAG_SAMPLES_PER_PIXEL, "1");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
980 Replace(DICOM_TAG_NUMBER_OF_FRAMES, "1");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
981
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
982 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16)
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
983 {
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
984 Replace(DICOM_TAG_PIXEL_REPRESENTATION, "1");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
985 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
986 else
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
987 {
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
988 Replace(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
989 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
990
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
991 Replace(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
992 Replace(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
993
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
994 unsigned int bytesPerPixel = 0;
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
995
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
996 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
997 {
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
998 case PixelFormat_Grayscale8:
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
999 Replace(DICOM_TAG_BITS_ALLOCATED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1000 Replace(DICOM_TAG_BITS_STORED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1001 Replace(DICOM_TAG_HIGH_BIT, "7");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1002 bytesPerPixel = 1;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1003 break;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1004
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1005 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1006 case PixelFormat_RGBA32:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1007 Replace(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1008 Replace(DICOM_TAG_SAMPLES_PER_PIXEL, "3");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1009 Replace(DICOM_TAG_BITS_ALLOCATED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1010 Replace(DICOM_TAG_BITS_STORED, "8");
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1011 Replace(DICOM_TAG_HIGH_BIT, "7");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1012 bytesPerPixel = 3;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1013 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1014
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1015 case PixelFormat_Grayscale16:
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1016 case PixelFormat_SignedGrayscale16:
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1017 Replace(DICOM_TAG_BITS_ALLOCATED, "16");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1018 Replace(DICOM_TAG_BITS_STORED, "16");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1019 Replace(DICOM_TAG_HIGH_BIT, "15");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1020 bytesPerPixel = 2;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1021 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1022
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1023 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1024 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1025 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1026
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1027 assert(bytesPerPixel != 0);
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1028
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1029 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(),
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1030 DICOM_TAG_PIXEL_DATA.GetElement());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1031
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1032 std::auto_ptr<DcmPixelData> pixels(new DcmPixelData(key));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1033
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1034 unsigned int pitch = accessor.GetWidth() * bytesPerPixel;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1035 Uint8* target = NULL;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1036 pixels->createUint8Array(accessor.GetHeight() * pitch, target);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1037
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1038 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1039 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1040 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1041 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1042 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1043 case PixelFormat_Grayscale8:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1044 case PixelFormat_Grayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1045 case PixelFormat_SignedGrayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1046 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1047 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1048 target += pitch;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1049 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1050 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1051
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1052 case PixelFormat_RGBA32:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1053 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1054 // The alpha channel is not supported by the DICOM standard
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1055 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1056 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1057 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1058 target[0] = source[0];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1059 target[1] = source[1];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1060 target[2] = source[2];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1061 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1062
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1063 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1064 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1065
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1066 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1067 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1068 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1069 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1070
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1071 if (!pimpl_->file_->getDataset()->insert(pixels.release(), false, false).good())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1072 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1073 throw OrthancException(ErrorCode_InternalError);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1074 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1075 }
874
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1076
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1077
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1078 Encoding ParsedDicomFile::GetEncoding() const
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1079 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1080 return FromDcmtkBridge::DetectEncoding(*pimpl_->file_->getDataset(),
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1081 Configuration::GetDefaultEncoding());
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1082 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1083
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1084
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1085 void ParsedDicomFile::SetEncoding(Encoding encoding)
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1086 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1087 if (encoding == Encoding_Windows1251)
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1088 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1089 // This Cyrillic codepage is not officially supported by the
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1090 // DICOM standard. Do not set the SpecificCharacterSet tag.
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1091 return;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1092 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1093
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
1094 std::string s = GetDicomSpecificCharacterSet(encoding);
1091
a66224eec125 encoding tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1090
diff changeset
1095 Replace(DICOM_TAG_SPECIFIC_CHARACTER_SET, s, DicomReplaceMode_InsertIfAbsent);
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1096 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1097
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1662
diff changeset
1098 void ParsedDicomFile::ToJson(Json::Value& target,
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1662
diff changeset
1099 DicomToJsonFormat format,
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1100 DicomToJsonFlags flags,
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1662
diff changeset
1101 unsigned int maxStringLength)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1102 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1103 FromDcmtkBridge::ToJson(target, *pimpl_->file_->getDataset(),
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1104 format, flags, maxStringLength,
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1105 Configuration::GetDefaultEncoding());
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1106 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1107
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1108
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1109 void ParsedDicomFile::HeaderToJson(Json::Value& target,
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1110 DicomToJsonFormat format)
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1111 {
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1112 FromDcmtkBridge::ToJson(target, *pimpl_->file_->getMetaInfo(), format, DicomToJsonFlags_None, 0);
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1113 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1114
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1115
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1116 bool ParsedDicomFile::HasTag(const DicomTag& tag) const
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1117 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1118 DcmTag key(tag.GetGroup(), tag.GetElement());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1119 return pimpl_->file_->getDataset()->tagExists(key);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1120 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1121
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1122
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1123 void ParsedDicomFile::EmbedPdf(const std::string& pdf)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1124 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1125 if (pdf.size() < 5 || // (*)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1126 strncmp("%PDF-", pdf.c_str(), 5) != 0)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1127 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1128 LOG(ERROR) << "Not a PDF file";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1129 throw OrthancException(ErrorCode_BadFileFormat);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1130 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1131
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1132 Replace(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1133 Replace(FromDcmtkBridge::Convert(DCM_Modality), "OT");
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1134 Replace(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD");
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1135 Replace(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), "application/pdf");
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
1136 //Replace(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1137
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1138 std::auto_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1139
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1140 size_t s = pdf.size();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1141 if (s & 1)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1142 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1143 // The size of the buffer must be even
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1144 s += 1;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1145 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1146
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1147 Uint8* bytes = NULL;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1148 OFCondition result = element->createUint8Array(s, bytes);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1149 if (!result.good() || bytes == NULL)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1150 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1151 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1152 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1153
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1154 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) )
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1155 bytes[s - 1] = 0;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1156
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1157 memcpy(bytes, pdf.c_str(), pdf.size());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1158
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1159 DcmPolymorphOBOW* obj = element.release();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1160 result = pimpl_->file_->getDataset()->insert(obj);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1161
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1162 if (!result.good())
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1163 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1164 delete obj;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1165 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1166 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1167 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1168
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1169
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1170 bool ParsedDicomFile::ExtractPdf(std::string& pdf)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1171 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1172 std::string sop, mime;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1173
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1174 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1175 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1176 sop != UID_EncapsulatedPDFStorage ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1177 mime != "application/pdf")
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1178 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1179 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1180 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1181
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1182 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT))
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1183 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1184 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1185 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1186
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1187 // Strip the possible pad byte at the end of file, because the
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1188 // encapsulated documents must always have an even length. The PDF
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1189 // format expects files to end with %%EOF followed by CR/LF. If
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1190 // the last character of the file is not a CR or LF, we assume it
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1191 // is a pad byte and remove it.
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1192 if (pdf.size() > 0)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1193 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1194 char last = *pdf.rbegin();
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1195
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1196 if (last != 10 && last != 13)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1197 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1198 pdf.resize(pdf.size() - 1);
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1199 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1200 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1201
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1202 return true;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1203 }
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1204
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1205
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1206 void ParsedDicomFile::Convert(DicomMap& tags)
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1207 {
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
1208 FromDcmtkBridge::Convert(tags, *pimpl_->file_->getDataset(),
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
1209 ORTHANC_MAXIMUM_TAG_LENGTH,
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1210 Configuration::GetDefaultEncoding());
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1211 }
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1212
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1213
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1214 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json,
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1215 DicomFromJsonFlags flags)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1216 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1217 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1218 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1219
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1220 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers));
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1221 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, Configuration::GetDefaultEncoding()));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1222
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1223 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1224
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1225 for (size_t i = 0; i < tags.size(); i++)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1226 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1227 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1228 const Json::Value& value = json[tags[i]];
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1229
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1230 if (tag == DICOM_TAG_PIXEL_DATA ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1231 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1232 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1233 if (value.type() != Json::stringValue)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1234 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1235 throw OrthancException(ErrorCode_BadRequest);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1236 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1237 else
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1238 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1239 result->EmbedContent(value.asString());
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1240 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1241 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1242 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1243 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1244 result->Replace(tag, value, decodeDataUriScheme);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1245 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1246 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1247
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1248 return result.release();
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1249 }
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1250
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1251
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1252 void ParsedDicomFile::GetRawFrame(std::string& target,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1253 std::string& mime,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1254 unsigned int frameId)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1255 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1256 if (pimpl_->frameIndex_.get() == NULL)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1257 {
1956
fc16ee04e71b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
1258 pimpl_->frameIndex_.reset(new DicomFrameIndex(*pimpl_->file_));
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1259 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1260
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1261 pimpl_->frameIndex_->GetRawFrame(target, frameId);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1262
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1263 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1264 switch (transferSyntax)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1265 {
1946
40b7a0176305 fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
1266 case EXS_JPEGProcess1:
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1267 mime = "image/jpeg";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1268 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1269
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1270 case EXS_JPEG2000LosslessOnly:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1271 case EXS_JPEG2000:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1272 mime = "image/jp2";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1273
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1274 default:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1275 mime = "application/octet-stream";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1276 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1277 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1278 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1279
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1280
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1281 void ParsedDicomFile::InvalidateCache()
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1282 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1283 pimpl_->frameIndex_.reset(NULL);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1284 }
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1285
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1286
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1287 unsigned int ParsedDicomFile::GetFramesCount() const
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1288 {
1956
fc16ee04e71b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
1289 return DicomFrameIndex::GetFramesCount(*pimpl_->file_);
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1290 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1291 }