Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.cpp @ 4831:7053502fbf97
added copyright UCLouvain
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 25 Nov 2021 19:01:11 +0100 |
| parents | 235d3a9f8dec |
| children | 02d77189d8ba |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2021 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 790 | 7 * |
| 8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
| 790 | 12 * |
| 13 * This program is distributed in the hope that it will be useful, but | |
| 14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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16 * Lesser General Public License for more details. |
| 790 | 17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
| 790 | 21 **/ |
| 22 | |
| 23 | |
| 24 | |
| 25 /*========================================================================= | |
| 26 | |
| 27 This file is based on portions of the following project: | |
| 28 | |
| 29 Program: GDCM (Grassroots DICOM). A DICOM library | |
| 30 Module: http://gdcm.sourceforge.net/Copyright.html | |
| 31 | |
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32 Copyright (c) 2006-2011 Mathieu Malaterre |
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33 Copyright (c) 1993-2005 CREATIS |
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34 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) |
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35 All rights reserved. |
| 790 | 36 |
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37 Redistribution and use in source and binary forms, with or without |
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38 modification, are permitted provided that the following conditions are met: |
| 790 | 39 |
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40 * Redistributions of source code must retain the above copyright notice, |
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41 this list of conditions and the following disclaimer. |
| 790 | 42 |
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43 * Redistributions in binary form must reproduce the above copyright notice, |
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44 this list of conditions and the following disclaimer in the documentation |
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45 and/or other materials provided with the distribution. |
| 790 | 46 |
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47 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any |
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48 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to |
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49 endorse or promote products derived from this software without specific |
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50 prior written permission. |
| 790 | 51 |
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52 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' |
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53 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
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54 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE |
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55 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR |
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56 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
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57 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
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58 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
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59 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
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60 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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61 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 790 | 62 |
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63 =========================================================================*/ |
| 790 | 64 |
| 65 | |
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66 #include "../PrecompiledHeaders.h" |
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67 |
| 790 | 68 #ifndef NOMINMAX |
| 69 #define NOMINMAX | |
| 70 #endif | |
| 71 | |
| 72 #include "ParsedDicomFile.h" | |
| 73 | |
| 74 #include "FromDcmtkBridge.h" | |
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75 #include "Internals/DicomFrameIndex.h" |
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76 #include "Internals/DicomImageDecoder.h" |
| 790 | 77 #include "ToDcmtkBridge.h" |
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78 |
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79 #include "../Images/PamReader.h" |
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80 #include "../Logging.h" |
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81 #include "../OrthancException.h" |
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82 #include "../SerializationToolbox.h" |
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83 #include "../Toolbox.h" |
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84 |
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85 #if ORTHANC_SANDBOXED == 0 |
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86 # include "../SystemToolbox.h" |
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87 #endif |
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89 #if ORTHANC_ENABLE_JPEG == 1 |
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90 # include "../Images/JpegReader.h" |
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91 #endif |
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92 |
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93 #if ORTHANC_ENABLE_PNG == 1 |
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94 # include "../Images/PngReader.h" |
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95 #endif |
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96 |
| 790 | 97 #include <list> |
| 98 #include <limits> | |
| 99 | |
| 100 #include <boost/lexical_cast.hpp> | |
| 101 | |
| 102 #include <dcmtk/dcmdata/dcchrstr.h> | |
| 103 #include <dcmtk/dcmdata/dcdicent.h> | |
| 104 #include <dcmtk/dcmdata/dcdict.h> | |
| 105 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 106 #include <dcmtk/dcmdata/dcuid.h> | |
| 107 #include <dcmtk/dcmdata/dcmetinf.h> | |
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108 #include <dcmtk/dcmdata/dcdeftag.h> |
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109 #include <dcmtk/dcmdata/dcswap.h> |
| 790 | 110 |
| 111 #include <dcmtk/dcmdata/dcvrae.h> | |
| 112 #include <dcmtk/dcmdata/dcvras.h> | |
| 113 #include <dcmtk/dcmdata/dcvrcs.h> | |
| 114 #include <dcmtk/dcmdata/dcvrda.h> | |
| 115 #include <dcmtk/dcmdata/dcvrds.h> | |
| 116 #include <dcmtk/dcmdata/dcvrdt.h> | |
| 117 #include <dcmtk/dcmdata/dcvrfd.h> | |
| 118 #include <dcmtk/dcmdata/dcvrfl.h> | |
| 119 #include <dcmtk/dcmdata/dcvris.h> | |
| 120 #include <dcmtk/dcmdata/dcvrlo.h> | |
| 121 #include <dcmtk/dcmdata/dcvrlt.h> | |
| 122 #include <dcmtk/dcmdata/dcvrpn.h> | |
| 123 #include <dcmtk/dcmdata/dcvrsh.h> | |
| 124 #include <dcmtk/dcmdata/dcvrsl.h> | |
| 125 #include <dcmtk/dcmdata/dcvrss.h> | |
| 126 #include <dcmtk/dcmdata/dcvrst.h> | |
| 127 #include <dcmtk/dcmdata/dcvrtm.h> | |
| 128 #include <dcmtk/dcmdata/dcvrui.h> | |
| 129 #include <dcmtk/dcmdata/dcvrul.h> | |
| 130 #include <dcmtk/dcmdata/dcvrus.h> | |
| 131 #include <dcmtk/dcmdata/dcvrut.h> | |
| 132 #include <dcmtk/dcmdata/dcpixel.h> | |
| 133 #include <dcmtk/dcmdata/dcpixseq.h> | |
| 134 #include <dcmtk/dcmdata/dcpxitem.h> | |
| 135 | |
| 136 | |
| 137 #include <boost/math/special_functions/round.hpp> | |
| 138 #include <dcmtk/dcmdata/dcostrmb.h> | |
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139 #include <boost/algorithm/string/predicate.hpp> |
| 790 | 140 |
| 141 | |
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142 #if DCMTK_VERSION_NUMBER <= 360 |
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143 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
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144 #endif |
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145 |
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146 |
| 790 | 147 |
| 148 namespace Orthanc | |
| 149 { | |
| 794 | 150 struct ParsedDicomFile::PImpl |
| 151 { | |
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152 std::unique_ptr<DcmFileFormat> file_; |
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153 std::unique_ptr<DicomFrameIndex> frameIndex_; |
| 794 | 154 }; |
| 155 | |
| 156 | |
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157 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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158 static void ParseTagAndGroup(DcmTagKey& key, |
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159 const std::string& tag) |
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160 { |
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161 DicomTag t = FromDcmtkBridge::ParseTag(tag); |
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162 key = DcmTagKey(t.GetGroup(), t.GetElement()); |
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163 } |
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164 |
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165 |
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166 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, |
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167 E_TransferSyntax transferSyntax) |
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168 { |
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169 DcmPixelSequence* pixelSequence = NULL; |
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170 if (pixelData.getEncapsulatedRepresentation |
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171 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) |
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172 { |
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173 return pixelSequence->card(); |
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174 } |
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175 else |
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176 { |
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177 return 1; |
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178 } |
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179 } |
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180 |
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181 |
| 790 | 182 static void SendPathValueForDictionary(RestApiOutput& output, |
| 183 DcmItem& dicom) | |
| 184 { | |
| 185 Json::Value v = Json::arrayValue; | |
| 186 | |
| 187 for (unsigned long i = 0; i < dicom.card(); i++) | |
| 188 { | |
| 189 DcmElement* element = dicom.getElement(i); | |
| 190 if (element) | |
| 191 { | |
| 192 char buf[16]; | |
| 193 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
| 194 v.append(buf); | |
| 195 } | |
| 196 } | |
| 197 | |
| 198 output.AnswerJson(v); | |
| 199 } | |
| 200 | |
| 201 | |
| 202 static void SendSequence(RestApiOutput& output, | |
| 203 DcmSequenceOfItems& sequence) | |
| 204 { | |
| 205 // This element is a sequence | |
| 206 Json::Value v = Json::arrayValue; | |
| 207 | |
| 208 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 209 { | |
| 210 v.append(boost::lexical_cast<std::string>(i)); | |
| 211 } | |
| 212 | |
| 213 output.AnswerJson(v); | |
| 214 } | |
| 215 | |
| 216 | |
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217 namespace |
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219 class DicomFieldStream : public IHttpStreamAnswer |
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220 { |
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221 private: |
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222 DcmElement& element_; |
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223 uint32_t length_; |
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224 uint32_t offset_; |
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225 std::string chunk_; |
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226 size_t chunkSize_; |
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227 |
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228 public: |
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229 DicomFieldStream(DcmElement& element, |
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230 E_TransferSyntax transferSyntax) : |
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231 element_(element), |
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232 length_(element.getLength(transferSyntax)), |
| 1616 | 233 offset_(0), |
| 234 chunkSize_(0) | |
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235 { |
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237 chunk_.resize(CHUNK_SIZE); |
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238 } |
| 790 | 239 |
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240 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
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241 bool /*deflateAllowed*/) |
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242 ORTHANC_OVERRIDE |
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243 { |
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244 // No support for compression |
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245 return HttpCompression_None; |
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246 } |
| 790 | 247 |
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248 virtual bool HasContentFilename(std::string& filename) ORTHANC_OVERRIDE |
| 790 | 249 { |
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250 return false; |
| 790 | 251 } |
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252 |
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253 virtual std::string GetContentType() ORTHANC_OVERRIDE |
| 790 | 254 { |
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255 return EnumerationToString(MimeType_Binary); |
| 790 | 256 } |
| 257 | |
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258 virtual uint64_t GetContentLength() ORTHANC_OVERRIDE |
| 790 | 259 { |
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260 return length_; |
| 790 | 261 } |
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262 |
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263 virtual bool ReadNextChunk() ORTHANC_OVERRIDE |
| 790 | 264 { |
| 1520 | 265 assert(offset_ <= length_); |
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266 |
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267 if (offset_ == length_) |
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268 { |
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269 return false; |
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270 } |
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271 else |
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272 { |
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273 if (length_ - offset_ < chunk_.size()) |
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274 { |
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275 chunkSize_ = length_ - offset_; |
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276 } |
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277 else |
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278 { |
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279 chunkSize_ = chunk_.size(); |
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280 } |
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281 |
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282 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
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283 |
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284 offset_ += chunkSize_; |
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285 |
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286 if (!cond.good()) |
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287 { |
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288 throw OrthancException(ErrorCode_InternalError, |
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289 "Error while sending a DICOM field: " + |
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290 std::string(cond.text())); |
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291 } |
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292 |
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293 return true; |
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294 } |
| 790 | 295 } |
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296 |
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297 virtual const char *GetChunkContent() ORTHANC_OVERRIDE |
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298 { |
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299 return chunk_.c_str(); |
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300 } |
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301 |
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302 virtual size_t GetChunkSize() ORTHANC_OVERRIDE |
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303 { |
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304 return chunkSize_; |
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305 } |
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306 }; |
| 790 | 307 } |
| 308 | |
| 309 | |
| 310 static bool AnswerPixelData(RestApiOutput& output, | |
| 311 DcmItem& dicom, | |
| 312 E_TransferSyntax transferSyntax, | |
| 313 const std::string* blockUri) | |
| 314 { | |
| 315 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
| 316 DICOM_TAG_PIXEL_DATA.GetElement()); | |
| 317 | |
| 318 DcmElement *element = NULL; | |
| 319 if (!dicom.findAndGetElement(k, element).good() || | |
| 320 element == NULL) | |
| 321 { | |
| 322 return false; | |
| 323 } | |
| 324 | |
| 325 try | |
| 326 { | |
| 327 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
| 328 if (blockUri == NULL) | |
| 329 { | |
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330 // The user asks how many blocks are present in this pixel data |
| 790 | 331 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
| 332 | |
| 333 Json::Value result(Json::arrayValue); | |
| 334 for (unsigned int i = 0; i < blocks; i++) | |
| 335 { | |
| 336 result.append(boost::lexical_cast<std::string>(i)); | |
| 337 } | |
| 338 | |
| 339 output.AnswerJson(result); | |
| 340 return true; | |
| 341 } | |
| 342 | |
| 343 | |
| 344 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
| 345 | |
| 346 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
| 347 { | |
| 348 DcmPixelSequence* pixelSequence = NULL; | |
| 349 if (pixelData.getEncapsulatedRepresentation | |
| 350 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 351 { | |
| 352 // This is the case for JPEG transfer syntaxes | |
| 353 if (block < pixelSequence->card()) | |
| 354 { | |
| 355 DcmPixelItem* pixelItem = NULL; | |
| 356 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
| 357 { | |
| 358 if (pixelItem->getLength() == 0) | |
| 359 { | |
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360 output.AnswerBuffer(NULL, 0, MimeType_Binary); |
| 790 | 361 return true; |
| 362 } | |
| 363 | |
| 364 Uint8* buffer = NULL; | |
| 365 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
| 366 { | |
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367 output.AnswerBuffer(buffer, pixelItem->getLength(), MimeType_Binary); |
| 790 | 368 return true; |
| 369 } | |
| 370 } | |
| 371 } | |
| 372 } | |
| 373 else | |
| 374 { | |
| 375 // This is the case for raw, uncompressed image buffers | |
| 376 assert(*blockUri == "0"); | |
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377 DicomFieldStream stream(*element, transferSyntax); |
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378 output.AnswerStream(stream); |
| 790 | 379 } |
| 380 } | |
| 381 } | |
| 382 catch (boost::bad_lexical_cast&) | |
| 383 { | |
| 384 // The URI entered by the user is not a number | |
| 385 } | |
| 386 catch (std::bad_cast&) | |
| 387 { | |
| 388 // This should never happen | |
| 389 } | |
| 390 | |
| 391 return false; | |
| 392 } | |
| 393 | |
| 394 | |
| 395 static void SendPathValueForLeaf(RestApiOutput& output, | |
| 396 const std::string& tag, | |
| 397 DcmItem& dicom, | |
| 398 E_TransferSyntax transferSyntax) | |
| 399 { | |
| 400 DcmTagKey k; | |
| 401 ParseTagAndGroup(k, tag); | |
| 402 | |
| 403 DcmSequenceOfItems* sequence = NULL; | |
| 404 if (dicom.findAndGetSequence(k, sequence).good() && | |
| 405 sequence != NULL && | |
| 406 sequence->getVR() == EVR_SQ) | |
| 407 { | |
| 408 SendSequence(output, *sequence); | |
| 409 return; | |
| 410 } | |
| 411 | |
| 412 DcmElement* element = NULL; | |
| 413 if (dicom.findAndGetElement(k, element).good() && | |
| 414 element != NULL && | |
| 415 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
| 416 element->getVR() != EVR_SQ) | |
| 417 { | |
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418 DicomFieldStream stream(*element, transferSyntax); |
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419 output.AnswerStream(stream); |
| 790 | 420 } |
| 421 } | |
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422 #endif |
| 790 | 423 |
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424 |
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425 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 426 void ParsedDicomFile::SendPathValue(RestApiOutput& output, |
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427 const UriComponents& uri) const |
| 790 | 428 { |
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429 DcmItem* dicom = GetDcmtkObjectConst().getDataset(); |
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430 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
| 790 | 431 |
| 432 // Special case: Accessing the pixel data | |
| 433 if (uri.size() == 1 || | |
| 434 uri.size() == 2) | |
| 435 { | |
| 436 DcmTagKey tag; | |
| 437 ParseTagAndGroup(tag, uri[0]); | |
| 438 | |
| 439 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
| 440 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
| 441 { | |
| 442 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
| 443 return; | |
| 444 } | |
| 445 } | |
| 446 | |
| 447 // Go down in the tag hierarchy according to the URI | |
| 448 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
| 449 { | |
| 450 size_t index; | |
| 451 try | |
| 452 { | |
| 453 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
| 454 } | |
| 455 catch (boost::bad_lexical_cast&) | |
| 456 { | |
| 457 return; | |
| 458 } | |
| 459 | |
| 460 DcmTagKey k; | |
| 461 DcmItem *child = NULL; | |
| 462 ParseTagAndGroup(k, uri[2 * pos]); | |
| 463 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
| 464 child == NULL) | |
| 465 { | |
| 466 return; | |
| 467 } | |
| 468 | |
| 469 dicom = child; | |
| 470 } | |
| 471 | |
| 472 // We have reached the end of the URI | |
| 473 if (uri.size() % 2 == 0) | |
| 474 { | |
| 475 SendPathValueForDictionary(output, *dicom); | |
| 476 } | |
| 477 else | |
| 478 { | |
| 479 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
| 480 } | |
| 481 } | |
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482 #endif |
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483 |
| 790 | 484 |
| 485 void ParsedDicomFile::Remove(const DicomTag& tag) | |
| 486 { | |
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487 RemovePath(DicomPath(tag)); |
| 790 | 488 } |
| 489 | |
| 490 | |
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491 void ParsedDicomFile::Clear(const DicomTag& tag, |
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492 bool onlyIfExists) |
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493 { |
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494 ClearPath(DicomPath(tag), onlyIfExists); |
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495 } |
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496 |
| 790 | 497 |
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498 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
| 790 | 499 { |
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500 InvalidateCache(); |
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501 |
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502 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
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503 |
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504 // Loop over the dataset to detect its private tags |
| 790 | 505 typedef std::list<DcmElement*> Tags; |
| 506 Tags privateTags; | |
| 507 | |
| 508 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 509 { | |
| 510 DcmElement* element = dataset.getElement(i); | |
| 511 DcmTag tag(element->getTag()); | |
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512 |
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513 // Is this a private tag? |
| 1694 | 514 if (tag.isPrivate()) |
| 790 | 515 { |
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516 bool remove = true; |
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517 |
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518 // Check whether this private tag is to be kept |
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519 if (toKeep != NULL) |
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520 { |
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521 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
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522 if (toKeep->find(tmp) != toKeep->end()) |
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523 { |
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524 remove = false; // Keep it |
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525 } |
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526 } |
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527 |
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528 if (remove) |
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529 { |
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530 privateTags.push_back(element); |
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531 } |
| 790 | 532 } |
| 533 } | |
| 534 | |
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535 // Loop over the detected private tags to remove them |
| 790 | 536 for (Tags::iterator it = privateTags.begin(); |
| 537 it != privateTags.end(); ++it) | |
| 538 { | |
| 539 DcmElement* tmp = dataset.remove(*it); | |
| 540 if (tmp != NULL) | |
| 541 { | |
| 542 delete tmp; | |
| 543 } | |
| 544 } | |
| 545 } | |
| 546 | |
| 547 | |
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548 static void InsertInternal(DcmDataset& dicom, |
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549 DcmElement* element) |
| 790 | 550 { |
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551 OFCondition cond = dicom.insert(element, false, false); |
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552 if (!cond.good()) |
| 790 | 553 { |
| 554 // This field already exists | |
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555 delete element; |
| 790 | 556 throw OrthancException(ErrorCode_InternalError); |
| 557 } | |
| 558 } | |
| 559 | |
| 560 | |
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561 void ParsedDicomFile::Insert(const DicomTag& tag, |
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562 const Json::Value& value, |
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563 bool decodeDataUriScheme, |
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564 const std::string& privateCreator) |
| 790 | 565 { |
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566 if (tag.GetElement() == 0x0000) |
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567 { |
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568 // Prevent manually modifying generic group length tags: This is |
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569 // handled by DCMTK serialization |
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570 return; |
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571 } |
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572 |
|
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573 if (GetDcmtkObject().getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
|
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574 { |
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575 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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576 } |
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577 |
|
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578 if (decodeDataUriScheme && |
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579 value.type() == Json::stringValue && |
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580 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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581 tag == DICOM_TAG_PIXEL_DATA)) |
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582 { |
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583 if (EmbedContentInternal(value.asString())) |
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584 { |
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585 return; |
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586 } |
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587 } |
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588 |
|
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589 InvalidateCache(); |
|
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590 |
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591 bool hasCodeExtensions; |
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592 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
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593 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
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594 InsertInternal(*GetDcmtkObject().getDataset(), element.release()); |
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595 } |
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596 |
| 790 | 597 |
|
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598 void ParsedDicomFile::ReplacePlainString(const DicomTag& tag, |
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599 const std::string& utf8Value) |
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600 { |
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601 if (tag.IsPrivate()) |
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602 { |
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603 throw OrthancException(ErrorCode_InternalError, |
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604 "Cannot apply this function to private tags: " + tag.Format()); |
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605 } |
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606 else |
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607 { |
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608 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent, |
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609 "" /* not a private tag, so no private creator */); |
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610 } |
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611 } |
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612 |
|
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613 |
|
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614 void ParsedDicomFile::SetIfAbsent(const DicomTag& tag, |
|
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615 const std::string& utf8Value) |
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616 { |
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617 std::string currentValue; |
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618 if (!GetTagValue(currentValue, tag)) |
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619 { |
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620 ReplacePlainString(tag, utf8Value); |
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621 } |
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622 } |
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623 |
|
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624 void ParsedDicomFile::RemovePrivateTags() |
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625 { |
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626 RemovePrivateTagsInternal(NULL); |
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627 } |
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628 |
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629 void ParsedDicomFile::RemovePrivateTags(const std::set<DicomTag> &toKeep) |
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630 { |
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631 RemovePrivateTagsInternal(&toKeep); |
|
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632 } |
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633 |
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634 |
|
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635 static bool CanReplaceProceed(DcmDataset& dicom, |
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636 const DcmTagKey& tag, |
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637 DicomReplaceMode mode) |
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638 { |
| 1979 | 639 if (dicom.findAndDeleteElement(tag).good()) |
| 790 | 640 { |
| 1979 | 641 // This tag was existing, it has been deleted |
| 642 return true; | |
| 643 } | |
| 644 else | |
| 645 { | |
| 646 // This tag was absent, act wrt. the specified "mode" | |
| 790 | 647 switch (mode) |
| 648 { | |
| 649 case DicomReplaceMode_InsertIfAbsent: | |
| 1979 | 650 return true; |
| 790 | 651 |
| 652 case DicomReplaceMode_ThrowIfAbsent: | |
|
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653 throw OrthancException(ErrorCode_InexistentItem, "Cannot replace inexistent tag: " + |
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654 FromDcmtkBridge::GetTagName(DicomTag(tag.getGroup(), tag.getElement()), "")); |
| 790 | 655 |
| 656 case DicomReplaceMode_IgnoreIfAbsent: | |
| 1979 | 657 return false; |
| 658 | |
| 659 default: | |
| 660 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 790 | 661 } |
| 662 } | |
|
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663 } |
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664 |
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665 |
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666 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
| 1695 | 667 const std::string& utf8Value, |
|
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668 bool decodeDataUriScheme) |
|
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669 { |
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670 if (tag != DICOM_TAG_SOP_CLASS_UID && |
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671 tag != DICOM_TAG_SOP_INSTANCE_UID) |
| 790 | 672 { |
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673 return; |
| 790 | 674 } |
| 675 | |
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676 std::string binary; |
| 1695 | 677 const std::string* decoded = &utf8Value; |
|
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678 |
|
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679 if (decodeDataUriScheme && |
|
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680 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
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681 { |
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682 std::string mime; |
|
1981
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683 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
|
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684 { |
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685 throw OrthancException(ErrorCode_BadFileFormat); |
|
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686 } |
|
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|
687 |
|
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688 decoded = &binary; |
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689 } |
| 1695 | 690 else |
| 691 { | |
|
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692 bool hasCodeExtensions; |
|
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693 Encoding encoding = DetectEncoding(hasCodeExtensions); |
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694 if (encoding != Encoding_Utf8) |
| 1695 | 695 { |
| 696 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
| 697 decoded = &binary; | |
| 698 } | |
| 699 } | |
| 790 | 700 |
| 701 /** | |
| 702 * dcmodify will automatically correct 'Media Storage SOP Class | |
| 703 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
| 704 * you make changes to the related tags in the dataset ('SOP Class | |
| 705 * UID' and 'SOP Instance UID') via insert or modify mode | |
| 706 * options. You can disable this behaviour by using the -nmu | |
| 707 * option. | |
| 708 **/ | |
| 709 | |
| 710 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
| 711 { | |
|
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|
712 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
| 790 | 713 } |
| 714 | |
| 715 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
| 716 { | |
|
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717 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
|
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|
718 } |
|
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719 } |
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|
720 |
|
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|
721 |
|
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|
722 void ParsedDicomFile::Replace(const DicomTag& tag, |
| 1695 | 723 const std::string& utf8Value, |
|
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diff
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|
724 bool decodeDataUriScheme, |
|
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725 DicomReplaceMode mode, |
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|
726 const std::string& privateCreator) |
|
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727 { |
|
2797
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|
728 if (tag.GetElement() == 0x0000) |
|
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|
729 { |
|
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2521
diff
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|
730 // Prevent manually modifying generic group length tags: This is |
|
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|
731 // handled by DCMTK serialization |
|
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|
732 return; |
|
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|
733 } |
|
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734 else |
|
1982
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|
735 { |
|
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|
736 InvalidateCache(); |
|
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|
737 |
|
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|
738 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
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|
739 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
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|
740 { |
|
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|
741 // Either the tag was previously existing (and now removed), or |
|
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|
742 // the replace mode was set to "InsertIfAbsent" |
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|
743 |
|
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744 if (decodeDataUriScheme && |
|
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745 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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746 tag == DICOM_TAG_PIXEL_DATA)) |
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747 { |
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748 if (EmbedContentInternal(utf8Value)) |
|
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749 { |
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750 return; |
|
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751 } |
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752 } |
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changeset
|
753 |
|
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754 std::unique_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag, privateCreator)); |
| 1979 | 755 |
|
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756 if (!utf8Value.empty()) |
|
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757 { |
|
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758 bool hasCodeExtensions; |
|
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759 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
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760 FromDcmtkBridge::FillElementWithString(*element, utf8Value, decodeDataUriScheme, encoding); |
|
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761 } |
|
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762 |
|
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763 InsertInternal(dicom, element.release()); |
|
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764 |
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765 if (tag == DICOM_TAG_SOP_CLASS_UID || |
|
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changeset
|
766 tag == DICOM_TAG_SOP_INSTANCE_UID) |
|
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diff
changeset
|
767 { |
|
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changeset
|
768 if (decodeDataUriScheme && |
|
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769 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
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changeset
|
770 { |
|
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771 std::string mime, decoded; |
|
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772 if (!Toolbox::DecodeDataUriScheme(mime, decoded, utf8Value)) |
|
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773 { |
|
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|
774 throw OrthancException(ErrorCode_BadFileFormat); |
|
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775 } |
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776 else |
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777 { |
|
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778 UpdateStorageUid(tag, decoded, false); |
|
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779 } |
|
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780 } |
|
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781 else |
|
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|
782 { |
|
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|
783 UpdateStorageUid(tag, utf8Value, false); |
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784 } |
|
1982
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Modification of instances can now replace PixelData
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785 } |
|
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Modification of instances can now replace PixelData
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|
786 } |
| 1979 | 787 } |
|
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788 } |
|
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789 |
|
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changeset
|
790 |
|
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|
791 void ParsedDicomFile::Replace(const DicomTag& tag, |
|
558b25228a23
creation of tag hierarchy from json
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|
792 const Json::Value& value, |
|
1818
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ParsedDicomFile::CreateFromJson
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793 bool decodeDataUriScheme, |
|
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794 DicomReplaceMode mode, |
|
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795 const std::string& privateCreator) |
|
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796 { |
|
2797
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797 if (tag.GetElement() == 0x0000) |
|
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798 { |
|
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Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
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799 // Prevent manually modifying generic group length tags: This is |
|
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800 // handled by DCMTK serialization |
|
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801 return; |
|
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Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
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|
802 } |
|
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803 else if (value.type() == Json::stringValue) |
|
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Modification of instances can now replace PixelData
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|
804 { |
|
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|
805 Replace(tag, value.asString(), decodeDataUriScheme, mode, privateCreator); |
|
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|
806 } |
|
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|
807 else |
|
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diff
changeset
|
808 { |
| 1979 | 809 if (tag == DICOM_TAG_SOP_CLASS_UID || |
| 810 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
|
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|
811 { |
|
4683
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812 // Must be a string |
|
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813 throw OrthancException(ErrorCode_BadParameterType); |
|
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|
814 } |
|
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|
815 |
|
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816 InvalidateCache(); |
| 1979 | 817 |
|
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changeset
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818 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
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819 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
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820 { |
|
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changeset
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821 // Either the tag was previously existing (and now removed), or |
|
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822 // the replace mode was set to "InsertIfAbsent" |
|
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823 |
|
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824 bool hasCodeExtensions; |
|
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825 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
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826 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
|
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827 } |
| 790 | 828 } |
| 829 } | |
| 830 | |
| 831 | |
|
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|
832 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
|
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833 void ParsedDicomFile::Answer(RestApiOutput& output) const |
| 790 | 834 { |
| 835 std::string serialized; | |
|
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836 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *GetDcmtkObjectConst().getDataset())) |
| 790 | 837 { |
|
3901
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|
838 output.AnswerBuffer(serialized, MimeType_Dicom); |
| 790 | 839 } |
| 840 } | |
|
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changeset
|
841 #endif |
| 790 | 842 |
| 843 | |
| 844 bool ParsedDicomFile::GetTagValue(std::string& value, | |
|
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changeset
|
845 const DicomTag& tag) const |
| 790 | 846 { |
| 847 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
|
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changeset
|
848 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
|
1307
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Fix replacement and insertion of private DICOM tags
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|
849 |
|
1818
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ParsedDicomFile::CreateFromJson
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diff
changeset
|
850 if (tag.IsPrivate() || |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
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diff
changeset
|
851 FromDcmtkBridge::IsUnknownTag(tag) || |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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diff
changeset
|
852 tag == DICOM_TAG_PIXEL_DATA || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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diff
changeset
|
853 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
| 790 | 854 { |
|
1307
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Fix replacement and insertion of private DICOM tags
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diff
changeset
|
855 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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diff
changeset
|
856 long unsigned int count = 0; |
| 790 | 857 |
|
1307
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Fix replacement and insertion of private DICOM tags
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diff
changeset
|
858 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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diff
changeset
|
859 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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|
860 if (count > 0) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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diff
changeset
|
861 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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changeset
|
862 assert(data != NULL); |
|
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Fix replacement and insertion of private DICOM tags
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diff
changeset
|
863 value.assign(reinterpret_cast<const char*>(data), count); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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diff
changeset
|
864 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
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diff
changeset
|
865 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
866 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
867 value.clear(); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
868 } |
| 790 | 869 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
870 return true; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
871 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
872 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
873 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
874 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
875 } |
| 790 | 876 } |
| 877 else | |
| 878 { | |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
879 DcmElement* element = NULL; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
880 if (!dataset.findAndGetElement(k, element).good() || |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
881 element == NULL) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
882 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
883 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
884 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
885 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
886 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
887 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
888 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
889 std::set<DicomTag> tmp; |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
890 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
891 (*element, DicomToJsonFlags_Default, |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
892 0, encoding, hasCodeExtensions, tmp)); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
893 |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
894 if (v.get() == NULL || |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
895 v->IsNull()) |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
896 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
897 value = ""; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
898 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
899 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
900 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
901 // TODO v->IsBinary() |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
902 value = v->GetContent(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
903 } |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
904 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
905 return true; |
| 790 | 906 } |
| 907 } | |
| 908 | |
| 909 | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
910 DicomInstanceHasher ParsedDicomFile::GetHasher() const |
| 790 | 911 { |
| 912 std::string patientId, studyUid, seriesUid, instanceUid; | |
| 913 | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
914 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID)) |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
915 { |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
916 /** |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
917 * If "PatientID" is absent, be tolerant by considering it |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
918 * equals the empty string, then proceed. In Orthanc <= 1.5.6, |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
919 * an exception "Bad file format" was generated. |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
920 * https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
| 3853 | 921 * https://hg.orthanc-server.com/orthanc/rev/4c45e018bd3de3cfa21d6efc6734673aaaee4435 |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
922 **/ |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
923 patientId.clear(); |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
924 } |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
925 |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
926 if (!GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || |
| 790 | 927 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || |
| 928 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
| 929 { | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
930 throw OrthancException(ErrorCode_BadFileFormat, "missing StudyInstanceUID, SeriesInstanceUID or SOPInstanceUID"); |
| 790 | 931 } |
| 932 | |
| 933 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
| 934 } | |
| 935 | |
| 936 | |
| 937 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
| 938 { | |
|
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
939 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDcmtkObject().getDataset())) |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
940 { |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
941 throw OrthancException(ErrorCode_InternalError, "Cannot write DICOM file to memory"); |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
942 } |
| 790 | 943 } |
| 944 | |
| 945 | |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
946 #if ORTHANC_SANDBOXED == 0 |
| 790 | 947 void ParsedDicomFile::SaveToFile(const std::string& path) |
| 948 { | |
| 949 // TODO Avoid using a temporary memory buffer, write directly on disk | |
| 950 std::string content; | |
| 951 SaveToMemoryBuffer(content); | |
| 2140 | 952 SystemToolbox::WriteFile(content, path); |
| 790 | 953 } |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
954 #endif |
| 790 | 955 |
| 956 | |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
957 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
| 790 | 958 { |
| 794 | 959 pimpl_->file_.reset(new DcmFileFormat); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
960 |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
961 if (createIdentifiers) |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
962 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
963 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
964 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
965 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
966 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
967 } |
| 790 | 968 } |
| 969 | |
| 791 | 970 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
971 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
972 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
973 bool permissive, |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
974 const std::string& defaultPrivateCreator, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
975 const std::map<uint16_t, std::string>& privateCreators) |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
976 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
977 pimpl_->file_.reset(new DcmFileFormat); |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
978 InvalidateCache(); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
979 |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
980 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
981 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
982 if (tmp == NULL) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
983 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
984 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
985 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
986 else if (tmp->IsBinary()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
987 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
988 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
989 "Invalid binary string in the SpecificCharacterSet (0008,0005) tag"); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
990 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
991 else if (tmp->IsNull() || |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
992 tmp->GetContent().empty()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
993 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
994 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
995 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
996 else |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
997 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
998 Encoding encoding; |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
999 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1000 if (GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1001 { |
|
2846
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simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1002 SetEncoding(encoding); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1003 } |
|
2202
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Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1004 else |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1005 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1006 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1007 "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" + |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1008 tmp->GetContent() + "\""); |
|
2202
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Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1009 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1010 } |
|
2846
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simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1011 |
|
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1012 for (DicomMap::Content::const_iterator |
|
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1013 it = source.content_.begin(); it != source.content_.end(); ++it) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
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parents:
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diff
changeset
|
1014 { |
|
2846
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simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1015 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
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parents:
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changeset
|
1016 !it->second->IsNull()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1017 { |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1018 try |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1019 { |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1020 // Same as "ReplacePlainString()", but with support for private creator |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1021 const std::string& utf8Value = it->second->GetContent(); |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1022 |
| 4039 | 1023 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(it->first.GetGroup()); |
| 1024 | |
| 1025 if (it->first.IsPrivate() && | |
| 1026 found != privateCreators.end()) | |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1027 { |
| 4039 | 1028 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, found->second); |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1029 } |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1030 else |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1031 { |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1032 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator); |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1033 } |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1034 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1035 catch (OrthancException&) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
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parents:
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diff
changeset
|
1036 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
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parents:
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diff
changeset
|
1037 if (!permissive) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1038 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
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parents:
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diff
changeset
|
1039 throw; |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
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parents:
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diff
changeset
|
1040 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
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parents:
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diff
changeset
|
1041 } |
|
2846
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simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1042 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1043 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
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parents:
2142
diff
changeset
|
1044 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
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parents:
2142
diff
changeset
|
1045 |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1046 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1047 Encoding defaultEncoding, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1048 bool permissive) : |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1049 pimpl_(new PImpl) |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1050 { |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1051 std::map<uint16_t, std::string> noPrivateCreators; |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1052 CreateFromDicomMap(map, defaultEncoding, permissive, "" /* no default private creator */, noPrivateCreators); |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1053 } |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1054 |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
1055 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1056 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1057 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1058 bool permissive, |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1059 const std::string& defaultPrivateCreator, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1060 const std::map<uint16_t, std::string>& privateCreators) : |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1061 pimpl_(new PImpl) |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1062 { |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1063 CreateFromDicomMap(map, defaultEncoding, permissive, defaultPrivateCreator, privateCreators); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1064 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1065 |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1066 |
|
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1067 ParsedDicomFile::ParsedDicomFile(const void* content, |
|
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1068 size_t size) : pimpl_(new PImpl) |
| 791 | 1069 { |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1070 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
| 791 | 1071 } |
| 1072 | |
| 794 | 1073 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
| 791 | 1074 { |
| 1075 if (content.size() == 0) | |
| 1076 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1077 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
| 791 | 1078 } |
| 1079 else | |
| 1080 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1081 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
| 791 | 1082 } |
| 1083 } | |
| 792 | 1084 |
| 1085 | |
| 4200 | 1086 ParsedDicomFile::ParsedDicomFile(const ParsedDicomFile& other, |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1087 bool keepSopInstanceUid) : |
| 794 | 1088 pimpl_(new PImpl) |
| 792 | 1089 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1090 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.GetDcmtkObjectConst().clone())); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1091 |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1092 if (!keepSopInstanceUid) |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1093 { |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1094 // Create a new instance-level identifier |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1095 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1096 } |
| 792 | 1097 } |
| 1098 | |
| 1099 | |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1100 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
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diff
changeset
|
1101 { |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
1787
diff
changeset
|
1102 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1103 } |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
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diff
changeset
|
1104 |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
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changeset
|
1105 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1106 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1107 { |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
1787
diff
changeset
|
1108 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
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changeset
|
1109 } |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
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changeset
|
1110 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1111 |
|
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1112 ParsedDicomFile::ParsedDicomFile(DcmFileFormat* dicom) : pimpl_(new PImpl) |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1113 { |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1114 pimpl_->file_.reset(dicom); // No cloning |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1115 } |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1116 |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1117 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1118 DcmFileFormat& ParsedDicomFile::GetDcmtkObjectConst() const |
| 793 | 1119 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1120 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1121 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1122 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1123 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1124 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1125 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1126 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1127 return *pimpl_->file_; |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1128 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1129 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1130 |
| 4297 | 1131 ParsedDicomFile *ParsedDicomFile::AcquireDcmtkObject(DcmFileFormat *dicom) // No clone here |
|
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1132 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1133 return new ParsedDicomFile(dicom); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1134 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1135 |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1136 DcmFileFormat &ParsedDicomFile::GetDcmtkObject() |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1137 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1138 return GetDcmtkObjectConst(); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1139 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1140 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1141 |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1142 DcmFileFormat* ParsedDicomFile::ReleaseDcmtkObject() |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1143 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1144 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1145 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1146 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1147 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1148 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1149 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1150 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1151 pimpl_->frameIndex_.reset(NULL); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1152 return pimpl_->file_.release(); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1153 } |
| 793 | 1154 } |
| 1155 | |
| 1156 | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1157 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) const |
| 793 | 1158 { |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1159 return new ParsedDicomFile(*this, keepSopInstanceUid); |
| 793 | 1160 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1161 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1162 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1163 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1164 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1165 std::string mimeString, content; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1166 if (!Toolbox::DecodeDataUriScheme(mimeString, content, dataUriScheme)) |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1167 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1168 return false; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1169 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1170 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1171 Toolbox::ToLowerCase(mimeString); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1172 MimeType mime = StringToMimeType(mimeString); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1173 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1174 switch (mime) |
| 1562 | 1175 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1176 case MimeType_Png: |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1177 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1178 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1179 break; |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1180 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1181 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1182 "Orthanc was compiled without support of PNG"); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1183 #endif |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1184 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1185 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1186 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1187 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1188 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1189 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1190 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1191 "Orthanc was compiled without support of JPEG"); |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1192 #endif |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1193 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1194 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1195 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1196 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1197 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1198 case MimeType_Pdf: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1199 EmbedPdf(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1200 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1201 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1202 default: |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1203 throw OrthancException(ErrorCode_NotImplemented, |
| 2989 | 1204 "Unsupported MIME type for the content of a new DICOM file: " + |
| 1205 std::string(EnumerationToString(mime))); | |
| 1562 | 1206 } |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1207 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1208 return true; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1209 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1210 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1211 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1212 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1213 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1214 if (!EmbedContentInternal(dataUriScheme)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1215 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1216 throw OrthancException(ErrorCode_BadFileFormat); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1217 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1218 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1219 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1220 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1221 void ParsedDicomFile::EmbedImage(MimeType mime, |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1222 const std::string& content) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1223 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1224 switch (mime) |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1225 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1226 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1227 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1228 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1229 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1230 JpegReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1231 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1232 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1233 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1234 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1235 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1236 |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1237 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1238 case MimeType_Png: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1239 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1240 PngReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1241 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1242 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1243 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1244 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1245 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1246 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1247 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1248 { |
|
4211
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1249 // "true" means "enforce memory alignment": This is slower, |
|
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1250 // but possibly avoids crash related to non-aligned memory access |
|
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1251 PamReader reader(true); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1252 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1253 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1254 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1255 } |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1256 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1257 default: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1258 throw OrthancException(ErrorCode_NotImplemented); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1259 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1260 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1261 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1262 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1263 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1264 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1265 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1266 accessor.GetFormat() != PixelFormat_Grayscale16 && |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1267 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1268 accessor.GetFormat() != PixelFormat_RGB24 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1269 accessor.GetFormat() != PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1270 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1271 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1272 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1273 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1274 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1275 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1276 if (accessor.GetFormat() == PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1277 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1278 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1279 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1280 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1281 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1282 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1283 Remove(DICOM_TAG_PIXEL_DATA); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1284 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1285 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1286 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1287 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1288 // The "Number of frames" must only be present in multi-frame images |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1289 //ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1290 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1291 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1292 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1293 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1294 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1295 else |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1296 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1297 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1298 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1299 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1300 unsigned int bytesPerPixel = 0; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1301 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1302 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1303 { |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1304 case PixelFormat_Grayscale8: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1305 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1306 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1307 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1308 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1309 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1310 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1311 bytesPerPixel = 1; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1312 break; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1313 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1314 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1315 case PixelFormat_RGBA32: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1316 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1317 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1318 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1319 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1320 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1321 bytesPerPixel = 3; |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1322 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1323 // "Planar configuration" must only present if "Samples per |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1324 // Pixel" is greater than 1 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1325 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1326 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1327 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1328 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1329 case PixelFormat_Grayscale16: |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1330 case PixelFormat_SignedGrayscale16: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1331 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1332 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1333 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1334 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1335 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1336 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1337 bytesPerPixel = 2; |
|
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1338 break; |
|
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diff
changeset
|
1339 |
|
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1340 default: |
|
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diff
changeset
|
1341 throw OrthancException(ErrorCode_NotImplemented); |
|
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diff
changeset
|
1342 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1343 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1344 assert(bytesPerPixel != 0); |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1345 |
|
800
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1346 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
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generation of DICOM images from PNG files
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diff
changeset
|
1347 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
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parents:
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diff
changeset
|
1348 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1349 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
800
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diff
changeset
|
1350 |
|
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parents:
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diff
changeset
|
1351 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
|
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diff
changeset
|
1352 Uint8* target = NULL; |
|
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generation of DICOM images from PNG files
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parents:
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diff
changeset
|
1353 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
|
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parents:
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diff
changeset
|
1354 |
|
4278
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1355 const unsigned int height = accessor.GetHeight(); |
|
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1356 const unsigned int width = accessor.GetWidth(); |
|
9279de56a405
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1357 |
|
800
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generation of DICOM images from PNG files
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diff
changeset
|
1358 { |
|
4532
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1359 Uint8* q = target; |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1360 for (unsigned int y = 0; y < height; y++) |
|
800
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diff
changeset
|
1361 { |
|
4532
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1362 switch (accessor.GetFormat()) |
|
800
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parents:
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diff
changeset
|
1363 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1364 case PixelFormat_RGB24: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1365 case PixelFormat_Grayscale8: |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1366 case PixelFormat_Grayscale16: |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1367 case PixelFormat_SignedGrayscale16: |
|
800
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parents:
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diff
changeset
|
1368 { |
|
4532
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1369 memcpy(q, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1370 q += pitch; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1371 break; |
|
800
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parents:
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diff
changeset
|
1372 } |
|
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generation of DICOM images from PNG files
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diff
changeset
|
1373 |
|
4532
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1374 case PixelFormat_RGBA32: |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1375 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1376 // The alpha channel is not supported by the DICOM standard |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1377 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
11bfea08341a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1378 for (unsigned int x = 0; x < width; x++, q += 3, source += 4) |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1379 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1380 q[0] = source[0]; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1381 q[1] = source[1]; |
|
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changeset
|
1382 q[2] = source[2]; |
|
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changeset
|
1383 } |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1384 |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
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parents:
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diff
changeset
|
1385 break; |
|
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diff
changeset
|
1386 } |
|
800
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diff
changeset
|
1387 |
|
4532
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1388 default: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
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diff
changeset
|
1389 throw OrthancException(ErrorCode_NotImplemented); |
|
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diff
changeset
|
1390 } |
|
800
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diff
changeset
|
1391 } |
|
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diff
changeset
|
1392 } |
|
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diff
changeset
|
1393 |
|
4532
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diff
changeset
|
1394 static const Endianness ENDIANNESS = Toolbox::DetectEndianness(); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1395 if (ENDIANNESS == Endianness_Big && |
|
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diff
changeset
|
1396 (accessor.GetFormat() == PixelFormat_Grayscale16 || |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
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diff
changeset
|
1397 accessor.GetFormat() == PixelFormat_SignedGrayscale16)) |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
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diff
changeset
|
1398 { |
|
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diff
changeset
|
1399 // New in Orthanc 1.9.1 |
|
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1400 assert(pitch % 2 == 0); |
|
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diff
changeset
|
1401 swapBytes(target, accessor.GetHeight() * pitch, sizeof(uint16_t)); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
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diff
changeset
|
1402 } |
|
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diff
changeset
|
1403 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1404 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good()) |
|
800
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parents:
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diff
changeset
|
1405 { |
|
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diff
changeset
|
1406 throw OrthancException(ErrorCode_InternalError); |
|
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changeset
|
1407 } |
|
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changeset
|
1408 } |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1409 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1410 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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3060
diff
changeset
|
1411 Encoding ParsedDicomFile::DetectEncoding(bool& hasCodeExtensions) const |
|
956
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primitives for proper encoding handling
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diff
changeset
|
1412 { |
|
3217
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1413 return FromDcmtkBridge::DetectEncoding(hasCodeExtensions, |
|
4203
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parents:
4200
diff
changeset
|
1414 *GetDcmtkObjectConst().getDataset(), |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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2380
diff
changeset
|
1415 GetDefaultDicomEncoding()); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1416 } |
|
1090
e494ceb8d763
support more encodings
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diff
changeset
|
1417 |
|
e494ceb8d763
support more encodings
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parents:
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diff
changeset
|
1418 |
|
e494ceb8d763
support more encodings
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parents:
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diff
changeset
|
1419 void ParsedDicomFile::SetEncoding(Encoding encoding) |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1420 { |
|
1558
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fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1421 if (encoding == Encoding_Windows1251) |
|
1090
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parents:
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diff
changeset
|
1422 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1423 // This Cyrillic codepage is not officially supported by the |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1424 // DICOM standard. Do not set the SpecificCharacterSet tag. |
|
124de28b32ed
fix encodings of newly created dicom files
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parents:
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diff
changeset
|
1425 return; |
|
1090
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1426 } |
|
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support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1427 |
|
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1428 std::string s = GetDicomSpecificCharacterSet(encoding); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1429 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
|
1090
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support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1430 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1431 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1432 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1433 DicomToJsonFormat format, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1434 DicomToJsonFlags flags, |
|
4203
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improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1435 unsigned int maxStringLength) const |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1436 { |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1437 std::set<DicomTag> ignoreTagLength; |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1438 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1439 format, flags, maxStringLength, ignoreTagLength); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1440 } |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1441 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1442 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1443 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1444 DicomToJsonFormat format, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1445 DicomToJsonFlags flags, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1446 unsigned int maxStringLength, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1447 const std::set<DicomTag>& ignoreTagLength) const |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1448 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1449 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1450 format, flags, maxStringLength, ignoreTagLength); |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1451 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1452 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1453 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1454 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1455 DicomToJsonFormat format) const |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1456 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1457 FromDcmtkBridge::ExtractHeaderAsJson(target, *GetDcmtkObjectConst().getMetaInfo(), format, DicomToJsonFlags_None, 0); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1458 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1459 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1460 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1461 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1462 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1463 DcmTag key(tag.GetGroup(), tag.GetElement()); |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1464 return GetDcmtkObjectConst().getDataset()->tagExists(key); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1465 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1466 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1467 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1468 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1469 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1470 if (pdf.size() < 5 || // (*) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1471 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1472 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1473 throw OrthancException(ErrorCode_BadFileFormat, "Not a PDF file"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1474 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1475 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1476 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1477 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1478 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1479 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1480 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1481 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), MIME_PDF); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1482 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1483 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1484 std::unique_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1485 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1486 size_t s = pdf.size(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1487 if (s & 1) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1488 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1489 // The size of the buffer must be even |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1490 s += 1; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1491 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1492 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1493 Uint8* bytes = NULL; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1494 OFCondition result = element->createUint8Array(s, bytes); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1495 if (!result.good() || bytes == NULL) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1496 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1497 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1498 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1499 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1500 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1501 bytes[s - 1] = 0; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1502 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1503 memcpy(bytes, pdf.c_str(), pdf.size()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1504 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1505 DcmPolymorphOBOW* obj = element.release(); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1506 result = GetDcmtkObject().getDataset()->insert(obj); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1507 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1508 if (!result.good()) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1509 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1510 delete obj; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1511 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1512 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1513 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1514 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1515 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1516 bool ParsedDicomFile::ExtractPdf(std::string& pdf) const |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1517 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1518 std::string sop, mime; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1519 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1520 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1521 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1522 sop != UID_EncapsulatedPDFStorage || |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1523 mime != MIME_PDF) |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1524 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1525 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1526 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1527 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1528 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1529 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1530 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1531 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1532 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1533 // Strip the possible pad byte at the end of file, because the |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1534 // encapsulated documents must always have an even length. The PDF |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1535 // format expects files to end with %%EOF followed by CR/LF. If |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1536 // the last character of the file is not a CR or LF, we assume it |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1537 // is a pad byte and remove it. |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1538 if (pdf.size() > 0) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1539 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1540 char last = *pdf.rbegin(); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1541 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1542 if (last != 10 && last != 13) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1543 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1544 pdf.resize(pdf.size() - 1); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1545 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1546 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1547 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1548 return true; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1549 } |
|
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1550 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1551 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1552 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1553 DicomFromJsonFlags flags, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1554 const std::string& privateCreator) |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1555 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1556 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1557 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1558 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1559 std::unique_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1560 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding())); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1561 |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1562 const Json::Value::Members tags = json.getMemberNames(); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1563 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1564 for (size_t i = 0; i < tags.size(); i++) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1565 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1566 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1567 const Json::Value& value = json[tags[i]]; |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1568 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1569 if (tag == DICOM_TAG_PIXEL_DATA || |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1570 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1571 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1572 if (value.type() != Json::stringValue) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1573 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1574 throw OrthancException(ErrorCode_BadRequest); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1575 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1576 else |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1577 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1578 result->EmbedContent(value.asString()); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1579 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1580 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1581 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1582 { |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1583 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent, privateCreator); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1584 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1585 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1586 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1587 return result.release(); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1588 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1589 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1590 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1591 void ParsedDicomFile::GetRawFrame(std::string& target, |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1592 MimeType& mime, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1593 unsigned int frameId) const |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1594 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1595 if (pimpl_->frameIndex_.get() == NULL) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1596 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1597 assert(pimpl_->file_ != NULL && |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1598 GetDcmtkObjectConst().getDataset() != NULL); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1599 pimpl_->frameIndex_.reset(new DicomFrameIndex(*GetDcmtkObjectConst().getDataset())); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1600 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1601 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1602 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1603 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1604 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1605 switch (transferSyntax) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1606 { |
|
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1607 case EXS_JPEGProcess1: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1608 mime = MimeType_Jpeg; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1609 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1610 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1611 case EXS_JPEG2000LosslessOnly: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1612 case EXS_JPEG2000: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1613 mime = MimeType_Jpeg2000; |
| 2016 | 1614 break; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1615 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1616 default: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1617 mime = MimeType_Binary; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1618 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1619 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1620 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1621 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1622 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1623 void ParsedDicomFile::InvalidateCache() |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1624 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1625 pimpl_->frameIndex_.reset(NULL); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1626 } |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1627 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1628 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1629 unsigned int ParsedDicomFile::GetFramesCount() const |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1630 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1631 assert(pimpl_->file_ != NULL && |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1632 GetDcmtkObjectConst().getDataset() != NULL); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1633 return DicomFrameIndex::GetFramesCount(*GetDcmtkObjectConst().getDataset()); |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1634 } |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1635 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1636 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1637 void ParsedDicomFile::ChangeEncoding(Encoding target) |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1638 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1639 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1640 Encoding source = DetectEncoding(hasCodeExtensions); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1641 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1642 if (source != target) // Avoid unnecessary conversion |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1643 { |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1644 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1645 FromDcmtkBridge::ChangeStringEncoding(*GetDcmtkObject().getDataset(), source, hasCodeExtensions, target); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1646 } |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1647 } |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1648 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1649 |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1650 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1651 unsigned int maxTagLength) const |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1652 { |
|
4137
6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4136
diff
changeset
|
1653 std::set<DicomTag> ignoreTagLength; |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1654 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1655 maxTagLength, ignoreTagLength); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1656 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1657 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1658 |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1659 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1660 unsigned int maxTagLength, |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1661 const std::set<DicomTag>& ignoreTagLength) const |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1662 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1663 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1664 maxTagLength, ignoreTagLength); |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1665 } |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1666 |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1667 |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1668 bool ParsedDicomFile::LookupTransferSyntax(DicomTransferSyntax& result) const |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1669 { |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1670 return FromDcmtkBridge::LookupOrthancTransferSyntax(result, GetDcmtkObjectConst()); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1671 } |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1672 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1673 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1674 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1675 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1676 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1677 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1678 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1679 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1680 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1681 const char *c = NULL; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1682 if (dataset.findAndGetString(k, c).good() && |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1683 c != NULL) |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1684 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1685 result = StringToPhotometricInterpretation(c); |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1686 return true; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1687 } |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1688 else |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1689 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1690 return false; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1691 } |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1692 } |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1693 |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1694 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1695 void ParsedDicomFile::Apply(ITagVisitor& visitor) const |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1696 { |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1697 FromDcmtkBridge::Apply(*GetDcmtkObjectConst().getDataset(), visitor, GetDefaultDicomEncoding()); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1698 } |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1699 |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1700 |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1701 ImageAccessor* ParsedDicomFile::DecodeFrame(unsigned int frame) const |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1702 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1703 if (GetDcmtkObjectConst().getDataset() == NULL) |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1704 { |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1705 throw OrthancException(ErrorCode_InternalError); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1706 } |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1707 else |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1708 { |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1709 return DicomImageDecoder::Decode(*GetDcmtkObjectConst().getDataset(), frame); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1710 } |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1711 } |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1712 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1713 |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1714 static bool HasGenericGroupLength(const DicomPath& path) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1715 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1716 for (size_t i = 0; i < path.GetPrefixLength(); i++) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1717 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1718 if (path.GetPrefixTag(i).GetElement() == 0x0000) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1719 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1720 return true; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1721 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1722 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1723 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1724 return (path.GetFinalTag().GetElement() == 0x0000); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1725 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1726 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1727 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1728 void ParsedDicomFile::ReplacePath(const DicomPath& path, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1729 const Json::Value& value, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1730 bool decodeDataUriScheme, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1731 DicomReplaceMode mode, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1732 const std::string& privateCreator) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1733 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1734 if (HasGenericGroupLength(path)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1735 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1736 // Prevent manually modifying generic group length tags: This is |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1737 // handled by DCMTK serialization |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1738 return; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1739 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1740 else if (path.GetPrefixLength() == 0) |
|
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|
1741 { |
|
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|
1742 Replace(path.GetFinalTag(), value, decodeDataUriScheme, mode, privateCreator); |
|
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|
1743 } |
|
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|
1744 else |
|
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|
1745 { |
|
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|
1746 InvalidateCache(); |
|
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diff
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|
1747 |
|
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diff
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|
1748 bool hasCodeExtensions; |
|
7182f5732480
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diff
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|
1749 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
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|
1750 std::unique_ptr<DcmElement> element( |
|
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|
1751 FromDcmtkBridge::FromJson(path.GetFinalTag(), value, decodeDataUriScheme, encoding, privateCreator)); |
|
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diff
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|
1752 |
|
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diff
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|
1753 FromDcmtkBridge::ReplacePath(*GetDcmtkObject().getDataset(), path, *element, mode); |
|
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diff
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|
1754 } |
|
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diff
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|
1755 } |
|
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diff
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|
1756 |
|
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diff
changeset
|
1757 |
|
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diff
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|
1758 void ParsedDicomFile::RemovePath(const DicomPath& path) |
|
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|
1759 { |
|
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diff
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|
1760 InvalidateCache(); |
|
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diff
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|
1761 FromDcmtkBridge::RemovePath(*GetDcmtkObject().getDataset(), path); |
|
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diff
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|
1762 } |
|
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diff
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|
1763 |
|
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diff
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|
1764 |
|
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diff
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|
1765 void ParsedDicomFile::ClearPath(const DicomPath& path, |
|
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diff
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|
1766 bool onlyIfExists) |
|
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|
1767 { |
|
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|
1768 if (HasGenericGroupLength(path)) |
|
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diff
changeset
|
1769 { |
|
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diff
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|
1770 // Prevent manually modifying generic group length tags: This is |
|
7182f5732480
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diff
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|
1771 // handled by DCMTK serialization |
|
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|
1772 return; |
|
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diff
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|
1773 } |
|
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diff
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|
1774 else |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1775 { |
|
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diff
changeset
|
1776 InvalidateCache(); |
|
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diff
changeset
|
1777 FromDcmtkBridge::ClearPath(*GetDcmtkObject().getDataset(), path, onlyIfExists); |
|
7182f5732480
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diff
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|
1778 } |
|
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diff
changeset
|
1779 } |
|
7182f5732480
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1780 |
|
7182f5732480
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diff
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|
1781 |
|
4777
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diff
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|
1782 bool ParsedDicomFile::LookupSequenceItem(DicomMap& target, |
|
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|
1783 const DicomPath& path, |
|
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|
1784 size_t sequenceIndex) const |
|
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|
1785 { |
|
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|
1786 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
|
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|
1787 return FromDcmtkBridge::LookupSequenceItem(target, dataset, path, sequenceIndex); |
|
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|
1788 } |
|
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diff
changeset
|
1789 |
|
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diff
changeset
|
1790 |
|
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diff
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|
1791 void ParsedDicomFile::GetDefaultWindowing(double& windowCenter, |
|
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|
1792 double& windowWidth, |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1793 unsigned int frame) const |
|
4771
9f207131c7f4
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1794 { |
|
9f207131c7f4
added ParsedDicomFile::LookupSubSequence()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1795 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
|
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diff
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|
1796 |
|
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diff
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|
1797 const char* wc = NULL; |
|
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diff
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|
1798 const char* ww = NULL; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1799 DcmItem *item1 = NULL; |
|
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|
1800 DcmItem *item2 = NULL; |
|
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|
1801 |
|
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|
1802 if (dataset.findAndGetString(DCM_WindowCenter, wc).good() && |
|
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diff
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|
1803 dataset.findAndGetString(DCM_WindowWidth, ww).good() && |
|
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diff
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|
1804 wc != NULL && |
|
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diff
changeset
|
1805 ww != NULL && |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1806 SerializationToolbox::ParseFirstDouble(windowCenter, wc) && |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1807 SerializationToolbox::ParseFirstDouble(windowWidth, ww)) |
|
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|
1808 { |
|
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|
1809 return; // OK |
|
3b78ba359db3
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1810 } |
|
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|
1811 else if (dataset.findAndGetSequenceItem(DCM_PerFrameFunctionalGroupsSequence, item1, frame).good() && |
|
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|
1812 item1 != NULL && |
|
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1813 item1->findAndGetSequenceItem(DCM_FrameVOILUTSequence, item2, 0).good() && |
|
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|
1814 item2 != NULL && |
|
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1815 item2->findAndGetString(DCM_WindowCenter, wc).good() && |
|
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|
1816 item2->findAndGetString(DCM_WindowWidth, ww).good() && |
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1817 wc != NULL && |
|
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1818 ww != NULL && |
|
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1819 SerializationToolbox::ParseFirstDouble(windowCenter, wc) && |
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1820 SerializationToolbox::ParseFirstDouble(windowWidth, ww)) |
|
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1821 { |
|
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1822 // New in Orthanc 1.9.7, to deal with Philips multiframe images |
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1823 // (cf. private mail from Tomas Kenda on 2021-08-17) |
|
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1824 return; // OK |
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1825 } |
|
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1826 else |
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1827 { |
|
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1828 Uint16 bitsStored = 0; |
|
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1829 if (!dataset.findAndGetUint16(DCM_BitsStored, bitsStored).good() || |
|
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|
1830 bitsStored == 0) |
|
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1831 { |
|
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1832 bitsStored = 8; // Rough assumption |
|
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1833 } |
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1834 |
|
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|
1835 windowWidth = static_cast<double>(1 << bitsStored); |
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1836 windowCenter = windowWidth / 2.0f; |
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1837 } |
|
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1838 } |
|
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1839 |
|
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1840 |
|
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|
1841 void ParsedDicomFile::GetRescale(double& rescaleIntercept, |
|
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1842 double& rescaleSlope, |
|
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|
1843 unsigned int frame) const |
|
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1844 { |
|
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1845 DcmDataset& dataset = *const_cast<ParsedDicomFile&>(*this).GetDcmtkObject().getDataset(); |
|
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1846 |
|
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|
1847 const char* sopClassUid = NULL; |
|
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1848 const char* intercept = NULL; |
|
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1849 const char* slope = NULL; |
|
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1850 DcmItem *item1 = NULL; |
|
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1851 DcmItem *item2 = NULL; |
|
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1852 |
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1853 if (dataset.findAndGetString(DCM_SOPClassUID, sopClassUid).good() && |
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1854 sopClassUid != NULL && |
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1855 std::string(sopClassUid) == std::string(UID_RTDoseStorage)) |
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1856 { |
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1857 // We must not take the rescale value into account in the case of doses |
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1858 rescaleIntercept = 0; |
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1859 rescaleSlope = 1; |
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1860 } |
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1861 else if (dataset.findAndGetString(DCM_RescaleIntercept, intercept).good() && |
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1862 dataset.findAndGetString(DCM_RescaleSlope, slope).good() && |
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1863 intercept != NULL && |
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1864 slope != NULL && |
| 4781 | 1865 SerializationToolbox::ParseDouble(rescaleIntercept, intercept) && |
| 1866 SerializationToolbox::ParseDouble(rescaleSlope, slope)) | |
|
4777
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1867 { |
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1868 return; // OK |
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1869 } |
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1870 else if (dataset.findAndGetSequenceItem(DCM_PerFrameFunctionalGroupsSequence, item1, frame).good() && |
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1871 item1 != NULL && |
|
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1872 item1->findAndGetSequenceItem(DCM_PixelValueTransformationSequence, item2, 0).good() && |
|
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1873 item2 != NULL && |
|
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1874 item2->findAndGetString(DCM_RescaleIntercept, intercept).good() && |
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1875 item2->findAndGetString(DCM_RescaleSlope, slope).good() && |
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1876 intercept != NULL && |
|
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1877 slope != NULL && |
| 4781 | 1878 SerializationToolbox::ParseDouble(rescaleIntercept, intercept) && |
| 1879 SerializationToolbox::ParseDouble(rescaleSlope, slope)) | |
|
4777
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1880 { |
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1881 // New in Orthanc 1.9.7, to deal with Philips multiframe images |
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1882 // (cf. private mail from Tomas Kenda on 2021-08-17) |
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1883 return; // OK |
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1884 } |
|
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1885 else |
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1886 { |
|
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1887 rescaleIntercept = 0; |
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1888 rescaleSlope = 1; |
|
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1889 } |
|
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1890 } |
|
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1891 |
|
4771
9f207131c7f4
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1892 |
|
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1893 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
|
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1894 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore |
|
4296
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Sebastien Jodogne <s.jodogne@gmail.com>
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1895 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
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1896 DicomToJsonFormat format, |
|
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1897 DicomToJsonFlags flags, |
|
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1898 unsigned int maxStringLength) |
|
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1899 { |
|
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1900 return const_cast<const ParsedDicomFile&>(*this).DatasetToJson(target, format, flags, maxStringLength); |
|
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1901 } |
|
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1902 |
|
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1903 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
|
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1904 { |
|
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1905 return const_cast<ParsedDicomFile&>(*this).GetDcmtkObject(); |
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1906 } |
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1907 |
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1908 void ParsedDicomFile::Apply(ITagVisitor& visitor) |
|
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1909 { |
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1910 const_cast<const ParsedDicomFile&>(*this).Apply(visitor); |
|
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1911 } |
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1912 |
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1913 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) |
|
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1914 { |
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1915 return const_cast<const ParsedDicomFile&>(*this).Clone(keepSopInstanceUid); |
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1916 } |
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1917 |
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1918 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
|
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1919 { |
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1920 return const_cast<const ParsedDicomFile&>(*this).LookupTransferSyntax(result); |
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1921 } |
|
4507
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1922 |
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1923 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) const |
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1924 { |
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1925 DicomTransferSyntax s; |
|
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1926 if (LookupTransferSyntax(s)) |
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1927 { |
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1928 result = GetTransferSyntaxUid(s); |
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1929 return true; |
|
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1930 } |
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1931 else |
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1932 { |
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1933 return false; |
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1934 } |
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1935 } |
|
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1936 |
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1937 bool ParsedDicomFile::GetTagValue(std::string& value, |
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1938 const DicomTag& tag) |
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1939 { |
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1940 return const_cast<const ParsedDicomFile&>(*this).GetTagValue(value, tag); |
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1941 } |
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|
1942 #endif |
| 790 | 1943 } |