Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.cpp @ 4532:11bfea08341a Orthanc-1.9.1
fix ParsedDicomImage::EmbedImage() on big-endian
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 25 Feb 2021 16:52:32 +0100 |
parents | 8f9090b137f1 |
children | 94147ce2f097 |
rev | line source |
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790 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
790 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
790 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
790 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
790 | 20 **/ |
21 | |
22 | |
23 | |
24 /*========================================================================= | |
25 | |
26 This file is based on portions of the following project: | |
27 | |
28 Program: GDCM (Grassroots DICOM). A DICOM library | |
29 Module: http://gdcm.sourceforge.net/Copyright.html | |
30 | |
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31 Copyright (c) 2006-2011 Mathieu Malaterre |
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32 Copyright (c) 1993-2005 CREATIS |
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33 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) |
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34 All rights reserved. |
790 | 35 |
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36 Redistribution and use in source and binary forms, with or without |
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37 modification, are permitted provided that the following conditions are met: |
790 | 38 |
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39 * Redistributions of source code must retain the above copyright notice, |
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40 this list of conditions and the following disclaimer. |
790 | 41 |
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42 * Redistributions in binary form must reproduce the above copyright notice, |
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43 this list of conditions and the following disclaimer in the documentation |
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44 and/or other materials provided with the distribution. |
790 | 45 |
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46 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any |
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47 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to |
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48 endorse or promote products derived from this software without specific |
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49 prior written permission. |
790 | 50 |
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51 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' |
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52 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
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53 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE |
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54 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR |
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55 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
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56 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
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57 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
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58 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
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59 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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60 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
790 | 61 |
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62 =========================================================================*/ |
790 | 63 |
64 | |
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65 #include "../PrecompiledHeaders.h" |
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66 |
790 | 67 #ifndef NOMINMAX |
68 #define NOMINMAX | |
69 #endif | |
70 | |
71 #include "ParsedDicomFile.h" | |
72 | |
73 #include "FromDcmtkBridge.h" | |
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74 #include "Internals/DicomFrameIndex.h" |
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75 #include "Internals/DicomImageDecoder.h" |
790 | 76 #include "ToDcmtkBridge.h" |
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77 |
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78 #include "../Images/PamReader.h" |
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79 #include "../Logging.h" |
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80 #include "../OrthancException.h" |
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81 #include "../Toolbox.h" |
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82 |
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83 #if ORTHANC_SANDBOXED == 0 |
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84 # include "../SystemToolbox.h" |
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85 #endif |
790 | 86 |
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87 #if ORTHANC_ENABLE_JPEG == 1 |
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88 # include "../Images/JpegReader.h" |
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89 #endif |
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90 |
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91 #if ORTHANC_ENABLE_PNG == 1 |
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92 # include "../Images/PngReader.h" |
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93 #endif |
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94 |
790 | 95 #include <list> |
96 #include <limits> | |
97 | |
98 #include <boost/lexical_cast.hpp> | |
99 | |
100 #include <dcmtk/dcmdata/dcchrstr.h> | |
101 #include <dcmtk/dcmdata/dcdicent.h> | |
102 #include <dcmtk/dcmdata/dcdict.h> | |
103 #include <dcmtk/dcmdata/dcfilefo.h> | |
104 #include <dcmtk/dcmdata/dcuid.h> | |
105 #include <dcmtk/dcmdata/dcmetinf.h> | |
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106 #include <dcmtk/dcmdata/dcdeftag.h> |
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107 #include <dcmtk/dcmdata/dcswap.h> |
790 | 108 |
109 #include <dcmtk/dcmdata/dcvrae.h> | |
110 #include <dcmtk/dcmdata/dcvras.h> | |
111 #include <dcmtk/dcmdata/dcvrcs.h> | |
112 #include <dcmtk/dcmdata/dcvrda.h> | |
113 #include <dcmtk/dcmdata/dcvrds.h> | |
114 #include <dcmtk/dcmdata/dcvrdt.h> | |
115 #include <dcmtk/dcmdata/dcvrfd.h> | |
116 #include <dcmtk/dcmdata/dcvrfl.h> | |
117 #include <dcmtk/dcmdata/dcvris.h> | |
118 #include <dcmtk/dcmdata/dcvrlo.h> | |
119 #include <dcmtk/dcmdata/dcvrlt.h> | |
120 #include <dcmtk/dcmdata/dcvrpn.h> | |
121 #include <dcmtk/dcmdata/dcvrsh.h> | |
122 #include <dcmtk/dcmdata/dcvrsl.h> | |
123 #include <dcmtk/dcmdata/dcvrss.h> | |
124 #include <dcmtk/dcmdata/dcvrst.h> | |
125 #include <dcmtk/dcmdata/dcvrtm.h> | |
126 #include <dcmtk/dcmdata/dcvrui.h> | |
127 #include <dcmtk/dcmdata/dcvrul.h> | |
128 #include <dcmtk/dcmdata/dcvrus.h> | |
129 #include <dcmtk/dcmdata/dcvrut.h> | |
130 #include <dcmtk/dcmdata/dcpixel.h> | |
131 #include <dcmtk/dcmdata/dcpixseq.h> | |
132 #include <dcmtk/dcmdata/dcpxitem.h> | |
133 | |
134 | |
135 #include <boost/math/special_functions/round.hpp> | |
136 #include <dcmtk/dcmdata/dcostrmb.h> | |
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137 #include <boost/algorithm/string/predicate.hpp> |
790 | 138 |
139 | |
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140 #if DCMTK_VERSION_NUMBER <= 360 |
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141 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
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142 #endif |
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143 |
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144 |
790 | 145 |
146 namespace Orthanc | |
147 { | |
794 | 148 struct ParsedDicomFile::PImpl |
149 { | |
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150 std::unique_ptr<DcmFileFormat> file_; |
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151 std::unique_ptr<DicomFrameIndex> frameIndex_; |
794 | 152 }; |
153 | |
154 | |
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155 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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156 static void ParseTagAndGroup(DcmTagKey& key, |
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157 const std::string& tag) |
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158 { |
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159 DicomTag t = FromDcmtkBridge::ParseTag(tag); |
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160 key = DcmTagKey(t.GetGroup(), t.GetElement()); |
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161 } |
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162 |
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163 |
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164 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, |
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165 E_TransferSyntax transferSyntax) |
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166 { |
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167 DcmPixelSequence* pixelSequence = NULL; |
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168 if (pixelData.getEncapsulatedRepresentation |
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169 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) |
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170 { |
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171 return pixelSequence->card(); |
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172 } |
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173 else |
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174 { |
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175 return 1; |
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176 } |
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177 } |
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178 |
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179 |
790 | 180 static void SendPathValueForDictionary(RestApiOutput& output, |
181 DcmItem& dicom) | |
182 { | |
183 Json::Value v = Json::arrayValue; | |
184 | |
185 for (unsigned long i = 0; i < dicom.card(); i++) | |
186 { | |
187 DcmElement* element = dicom.getElement(i); | |
188 if (element) | |
189 { | |
190 char buf[16]; | |
191 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
192 v.append(buf); | |
193 } | |
194 } | |
195 | |
196 output.AnswerJson(v); | |
197 } | |
198 | |
199 | |
200 static void SendSequence(RestApiOutput& output, | |
201 DcmSequenceOfItems& sequence) | |
202 { | |
203 // This element is a sequence | |
204 Json::Value v = Json::arrayValue; | |
205 | |
206 for (unsigned long i = 0; i < sequence.card(); i++) | |
207 { | |
208 v.append(boost::lexical_cast<std::string>(i)); | |
209 } | |
210 | |
211 output.AnswerJson(v); | |
212 } | |
213 | |
214 | |
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215 namespace |
790 | 216 { |
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217 class DicomFieldStream : public IHttpStreamAnswer |
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218 { |
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219 private: |
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220 DcmElement& element_; |
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221 uint32_t length_; |
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222 uint32_t offset_; |
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223 std::string chunk_; |
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224 size_t chunkSize_; |
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225 |
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226 public: |
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227 DicomFieldStream(DcmElement& element, |
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228 E_TransferSyntax transferSyntax) : |
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229 element_(element), |
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230 length_(element.getLength(transferSyntax)), |
1616 | 231 offset_(0), |
232 chunkSize_(0) | |
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233 { |
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235 chunk_.resize(CHUNK_SIZE); |
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236 } |
790 | 237 |
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238 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
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239 bool /*deflateAllowed*/) |
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240 ORTHANC_OVERRIDE |
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241 { |
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242 // No support for compression |
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243 return HttpCompression_None; |
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244 } |
790 | 245 |
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246 virtual bool HasContentFilename(std::string& filename) ORTHANC_OVERRIDE |
790 | 247 { |
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248 return false; |
790 | 249 } |
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250 |
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251 virtual std::string GetContentType() ORTHANC_OVERRIDE |
790 | 252 { |
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253 return EnumerationToString(MimeType_Binary); |
790 | 254 } |
255 | |
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256 virtual uint64_t GetContentLength() ORTHANC_OVERRIDE |
790 | 257 { |
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258 return length_; |
790 | 259 } |
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260 |
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261 virtual bool ReadNextChunk() ORTHANC_OVERRIDE |
790 | 262 { |
1520 | 263 assert(offset_ <= length_); |
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264 |
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265 if (offset_ == length_) |
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266 { |
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267 return false; |
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268 } |
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269 else |
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270 { |
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271 if (length_ - offset_ < chunk_.size()) |
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272 { |
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273 chunkSize_ = length_ - offset_; |
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274 } |
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275 else |
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276 { |
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277 chunkSize_ = chunk_.size(); |
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278 } |
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279 |
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280 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
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281 |
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282 offset_ += chunkSize_; |
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283 |
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284 if (!cond.good()) |
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285 { |
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286 throw OrthancException(ErrorCode_InternalError, |
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287 "Error while sending a DICOM field: " + |
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288 std::string(cond.text())); |
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289 } |
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290 |
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291 return true; |
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292 } |
790 | 293 } |
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294 |
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295 virtual const char *GetChunkContent() ORTHANC_OVERRIDE |
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296 { |
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297 return chunk_.c_str(); |
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298 } |
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299 |
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300 virtual size_t GetChunkSize() ORTHANC_OVERRIDE |
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301 { |
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302 return chunkSize_; |
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303 } |
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304 }; |
790 | 305 } |
306 | |
307 | |
308 static bool AnswerPixelData(RestApiOutput& output, | |
309 DcmItem& dicom, | |
310 E_TransferSyntax transferSyntax, | |
311 const std::string* blockUri) | |
312 { | |
313 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
314 DICOM_TAG_PIXEL_DATA.GetElement()); | |
315 | |
316 DcmElement *element = NULL; | |
317 if (!dicom.findAndGetElement(k, element).good() || | |
318 element == NULL) | |
319 { | |
320 return false; | |
321 } | |
322 | |
323 try | |
324 { | |
325 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
326 if (blockUri == NULL) | |
327 { | |
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328 // The user asks how many blocks are present in this pixel data |
790 | 329 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
330 | |
331 Json::Value result(Json::arrayValue); | |
332 for (unsigned int i = 0; i < blocks; i++) | |
333 { | |
334 result.append(boost::lexical_cast<std::string>(i)); | |
335 } | |
336 | |
337 output.AnswerJson(result); | |
338 return true; | |
339 } | |
340 | |
341 | |
342 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
343 | |
344 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
345 { | |
346 DcmPixelSequence* pixelSequence = NULL; | |
347 if (pixelData.getEncapsulatedRepresentation | |
348 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
349 { | |
350 // This is the case for JPEG transfer syntaxes | |
351 if (block < pixelSequence->card()) | |
352 { | |
353 DcmPixelItem* pixelItem = NULL; | |
354 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
355 { | |
356 if (pixelItem->getLength() == 0) | |
357 { | |
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358 output.AnswerBuffer(NULL, 0, MimeType_Binary); |
790 | 359 return true; |
360 } | |
361 | |
362 Uint8* buffer = NULL; | |
363 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
364 { | |
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365 output.AnswerBuffer(buffer, pixelItem->getLength(), MimeType_Binary); |
790 | 366 return true; |
367 } | |
368 } | |
369 } | |
370 } | |
371 else | |
372 { | |
373 // This is the case for raw, uncompressed image buffers | |
374 assert(*blockUri == "0"); | |
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375 DicomFieldStream stream(*element, transferSyntax); |
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376 output.AnswerStream(stream); |
790 | 377 } |
378 } | |
379 } | |
380 catch (boost::bad_lexical_cast&) | |
381 { | |
382 // The URI entered by the user is not a number | |
383 } | |
384 catch (std::bad_cast&) | |
385 { | |
386 // This should never happen | |
387 } | |
388 | |
389 return false; | |
390 } | |
391 | |
392 | |
393 static void SendPathValueForLeaf(RestApiOutput& output, | |
394 const std::string& tag, | |
395 DcmItem& dicom, | |
396 E_TransferSyntax transferSyntax) | |
397 { | |
398 DcmTagKey k; | |
399 ParseTagAndGroup(k, tag); | |
400 | |
401 DcmSequenceOfItems* sequence = NULL; | |
402 if (dicom.findAndGetSequence(k, sequence).good() && | |
403 sequence != NULL && | |
404 sequence->getVR() == EVR_SQ) | |
405 { | |
406 SendSequence(output, *sequence); | |
407 return; | |
408 } | |
409 | |
410 DcmElement* element = NULL; | |
411 if (dicom.findAndGetElement(k, element).good() && | |
412 element != NULL && | |
413 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
414 element->getVR() != EVR_SQ) | |
415 { | |
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416 DicomFieldStream stream(*element, transferSyntax); |
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417 output.AnswerStream(stream); |
790 | 418 } |
419 } | |
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420 #endif |
790 | 421 |
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422 |
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423 static inline uint16_t GetCharValue(char c) |
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424 { |
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425 if (c >= '0' && c <= '9') |
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426 return c - '0'; |
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427 else if (c >= 'a' && c <= 'f') |
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428 return c - 'a' + 10; |
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429 else if (c >= 'A' && c <= 'F') |
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430 return c - 'A' + 10; |
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431 else |
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432 return 0; |
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433 } |
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434 |
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435 |
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436 static inline uint16_t GetTagValue(const char* c) |
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437 { |
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438 return ((GetCharValue(c[0]) << 12) + |
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439 (GetCharValue(c[1]) << 8) + |
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440 (GetCharValue(c[2]) << 4) + |
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441 GetCharValue(c[3])); |
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442 } |
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443 |
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444 |
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445 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
790 | 446 void ParsedDicomFile::SendPathValue(RestApiOutput& output, |
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447 const UriComponents& uri) const |
790 | 448 { |
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449 DcmItem* dicom = GetDcmtkObjectConst().getDataset(); |
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450 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
790 | 451 |
452 // Special case: Accessing the pixel data | |
453 if (uri.size() == 1 || | |
454 uri.size() == 2) | |
455 { | |
456 DcmTagKey tag; | |
457 ParseTagAndGroup(tag, uri[0]); | |
458 | |
459 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
460 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
461 { | |
462 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
463 return; | |
464 } | |
465 } | |
466 | |
467 // Go down in the tag hierarchy according to the URI | |
468 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
469 { | |
470 size_t index; | |
471 try | |
472 { | |
473 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
474 } | |
475 catch (boost::bad_lexical_cast&) | |
476 { | |
477 return; | |
478 } | |
479 | |
480 DcmTagKey k; | |
481 DcmItem *child = NULL; | |
482 ParseTagAndGroup(k, uri[2 * pos]); | |
483 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
484 child == NULL) | |
485 { | |
486 return; | |
487 } | |
488 | |
489 dicom = child; | |
490 } | |
491 | |
492 // We have reached the end of the URI | |
493 if (uri.size() % 2 == 0) | |
494 { | |
495 SendPathValueForDictionary(output, *dicom); | |
496 } | |
497 else | |
498 { | |
499 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
500 } | |
501 } | |
2394
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502 #endif |
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503 |
790 | 504 |
505 void ParsedDicomFile::Remove(const DicomTag& tag) | |
506 { | |
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507 InvalidateCache(); |
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508 |
790 | 509 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
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510 DcmElement* element = GetDcmtkObject().getDataset()->remove(key); |
790 | 511 if (element != NULL) |
512 { | |
513 delete element; | |
514 } | |
515 } | |
516 | |
517 | |
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518 void ParsedDicomFile::Clear(const DicomTag& tag, |
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519 bool onlyIfExists) |
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520 { |
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521 if (tag.GetElement() == 0x0000) |
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522 { |
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523 // Prevent manually modifying generic group length tags: This is |
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524 // handled by DCMTK serialization |
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525 return; |
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526 } |
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527 |
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528 InvalidateCache(); |
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529 |
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530 DcmItem* dicom = GetDcmtkObject().getDataset(); |
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531 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
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532 |
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533 if (onlyIfExists && |
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534 !dicom->tagExists(key)) |
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535 { |
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536 // The tag is non-existing, do not clear it |
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537 } |
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538 else |
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539 { |
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540 if (!dicom->insertEmptyElement(key, OFTrue /* replace old value */).good()) |
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541 { |
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542 throw OrthancException(ErrorCode_InternalError); |
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543 } |
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544 } |
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545 } |
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546 |
790 | 547 |
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548 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
790 | 549 { |
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550 InvalidateCache(); |
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551 |
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552 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
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553 |
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554 // Loop over the dataset to detect its private tags |
790 | 555 typedef std::list<DcmElement*> Tags; |
556 Tags privateTags; | |
557 | |
558 for (unsigned long i = 0; i < dataset.card(); i++) | |
559 { | |
560 DcmElement* element = dataset.getElement(i); | |
561 DcmTag tag(element->getTag()); | |
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562 |
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563 // Is this a private tag? |
1694 | 564 if (tag.isPrivate()) |
790 | 565 { |
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566 bool remove = true; |
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567 |
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568 // Check whether this private tag is to be kept |
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569 if (toKeep != NULL) |
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570 { |
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571 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
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572 if (toKeep->find(tmp) != toKeep->end()) |
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573 { |
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574 remove = false; // Keep it |
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575 } |
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576 } |
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577 |
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578 if (remove) |
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579 { |
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580 privateTags.push_back(element); |
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581 } |
790 | 582 } |
583 } | |
584 | |
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585 // Loop over the detected private tags to remove them |
790 | 586 for (Tags::iterator it = privateTags.begin(); |
587 it != privateTags.end(); ++it) | |
588 { | |
589 DcmElement* tmp = dataset.remove(*it); | |
590 if (tmp != NULL) | |
591 { | |
592 delete tmp; | |
593 } | |
594 } | |
595 } | |
596 | |
597 | |
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598 static void InsertInternal(DcmDataset& dicom, |
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599 DcmElement* element) |
790 | 600 { |
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601 OFCondition cond = dicom.insert(element, false, false); |
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602 if (!cond.good()) |
790 | 603 { |
604 // This field already exists | |
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605 delete element; |
790 | 606 throw OrthancException(ErrorCode_InternalError); |
607 } | |
608 } | |
609 | |
610 | |
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611 void ParsedDicomFile::Insert(const DicomTag& tag, |
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612 const Json::Value& value, |
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613 bool decodeDataUriScheme, |
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614 const std::string& privateCreator) |
790 | 615 { |
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616 if (tag.GetElement() == 0x0000) |
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617 { |
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618 // Prevent manually modifying generic group length tags: This is |
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619 // handled by DCMTK serialization |
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620 return; |
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621 } |
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|
622 |
3944
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preparing simplified interface for IDicomTranscoder
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changeset
|
623 if (GetDcmtkObject().getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
1980
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
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parents:
1979
diff
changeset
|
624 { |
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
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parents:
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diff
changeset
|
625 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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parents:
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diff
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|
626 } |
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new error code: ErrorCode_AlreadyExistingTag
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diff
changeset
|
627 |
1982
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Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
628 if (decodeDataUriScheme && |
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Modification of instances can now replace PixelData
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diff
changeset
|
629 value.type() == Json::stringValue && |
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diff
changeset
|
630 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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Modification of instances can now replace PixelData
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diff
changeset
|
631 tag == DICOM_TAG_PIXEL_DATA)) |
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1981
diff
changeset
|
632 { |
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Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
633 if (EmbedContentInternal(value.asString())) |
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Modification of instances can now replace PixelData
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1981
diff
changeset
|
634 { |
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Modification of instances can now replace PixelData
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diff
changeset
|
635 return; |
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
636 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
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diff
changeset
|
637 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
638 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
639 InvalidateCache(); |
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|
640 |
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|
641 bool hasCodeExtensions; |
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|
642 Encoding encoding = DetectEncoding(hasCodeExtensions); |
3712
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replacing std::auto_ptr by std::unique_ptr
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643 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
3944
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|
644 InsertInternal(*GetDcmtkObject().getDataset(), element.release()); |
1693
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|
645 } |
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|
646 |
790 | 647 |
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648 void ParsedDicomFile::ReplacePlainString(const DicomTag& tag, |
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649 const std::string& utf8Value) |
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650 { |
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|
651 if (tag.IsPrivate()) |
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652 { |
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|
653 throw OrthancException(ErrorCode_InternalError, |
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654 "Cannot apply this function to private tags: " + tag.Format()); |
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|
655 } |
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656 else |
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|
657 { |
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|
658 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent, |
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diff
changeset
|
659 "" /* not a private tag, so no private creator */); |
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parents:
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|
660 } |
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|
661 } |
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diff
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|
662 |
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parents:
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|
663 |
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parents:
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diff
changeset
|
664 void ParsedDicomFile::SetIfAbsent(const DicomTag& tag, |
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changeset
|
665 const std::string& utf8Value) |
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parents:
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|
666 { |
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|
667 std::string currentValue; |
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changeset
|
668 if (!GetTagValue(currentValue, tag)) |
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|
669 { |
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|
670 ReplacePlainString(tag, utf8Value); |
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|
671 } |
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parents:
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|
672 } |
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changeset
|
673 |
4296
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changeset
|
674 void ParsedDicomFile::RemovePrivateTags() |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
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changeset
|
675 { |
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changeset
|
676 RemovePrivateTagsInternal(NULL); |
3b70a2e6a06c
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parents:
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diff
changeset
|
677 } |
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moving inline methods to source files for ABI compatibility
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parents:
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diff
changeset
|
678 |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
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4278
diff
changeset
|
679 void ParsedDicomFile::RemovePrivateTags(const std::set<DicomTag> &toKeep) |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
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parents:
4278
diff
changeset
|
680 { |
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moving inline methods to source files for ABI compatibility
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parents:
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diff
changeset
|
681 RemovePrivateTagsInternal(&toKeep); |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
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parents:
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diff
changeset
|
682 } |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
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parents:
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diff
changeset
|
683 |
3691
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parents:
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diff
changeset
|
684 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
685 static bool CanReplaceProceed(DcmDataset& dicom, |
b5d4f9c156ad
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parents:
1981
diff
changeset
|
686 const DcmTagKey& tag, |
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Modification of instances can now replace PixelData
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parents:
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diff
changeset
|
687 DicomReplaceMode mode) |
1693
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|
688 { |
1979 | 689 if (dicom.findAndDeleteElement(tag).good()) |
790 | 690 { |
1979 | 691 // This tag was existing, it has been deleted |
692 return true; | |
693 } | |
694 else | |
695 { | |
696 // This tag was absent, act wrt. the specified "mode" | |
790 | 697 switch (mode) |
698 { | |
699 case DicomReplaceMode_InsertIfAbsent: | |
1979 | 700 return true; |
790 | 701 |
702 case DicomReplaceMode_ThrowIfAbsent: | |
703 throw OrthancException(ErrorCode_InexistentItem); | |
704 | |
705 case DicomReplaceMode_IgnoreIfAbsent: | |
1979 | 706 return false; |
707 | |
708 default: | |
709 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
790 | 710 } |
711 } | |
1693
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parents:
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diff
changeset
|
712 } |
558b25228a23
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parents:
1689
diff
changeset
|
713 |
558b25228a23
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parents:
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diff
changeset
|
714 |
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parents:
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diff
changeset
|
715 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
1695 | 716 const std::string& utf8Value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
717 bool decodeDataUriScheme) |
1693
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diff
changeset
|
718 { |
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parents:
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diff
changeset
|
719 if (tag != DICOM_TAG_SOP_CLASS_UID && |
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diff
changeset
|
720 tag != DICOM_TAG_SOP_INSTANCE_UID) |
790 | 721 { |
1693
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diff
changeset
|
722 return; |
790 | 723 } |
724 | |
1693
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creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
725 std::string binary; |
1695 | 726 const std::string* decoded = &utf8Value; |
1693
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parents:
1689
diff
changeset
|
727 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
728 if (decodeDataUriScheme && |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
729 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
1693
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
730 { |
558b25228a23
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parents:
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diff
changeset
|
731 std::string mime; |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
732 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
733 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
734 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
735 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
736 |
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|
737 decoded = &binary; |
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diff
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|
738 } |
1695 | 739 else |
740 { | |
3217
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
741 bool hasCodeExtensions; |
cf8cbeb35f33
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diff
changeset
|
742 Encoding encoding = DetectEncoding(hasCodeExtensions); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
743 if (encoding != Encoding_Utf8) |
1695 | 744 { |
745 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
746 decoded = &binary; | |
747 } | |
748 } | |
790 | 749 |
750 /** | |
751 * dcmodify will automatically correct 'Media Storage SOP Class | |
752 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
753 * you make changes to the related tags in the dataset ('SOP Class | |
754 * UID' and 'SOP Instance UID') via insert or modify mode | |
755 * options. You can disable this behaviour by using the -nmu | |
756 * option. | |
757 **/ | |
758 | |
759 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
760 { | |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
761 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
790 | 762 } |
763 | |
764 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
765 { | |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
766 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
1693
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diff
changeset
|
767 } |
558b25228a23
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diff
changeset
|
768 } |
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diff
changeset
|
769 |
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diff
changeset
|
770 |
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parents:
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diff
changeset
|
771 void ParsedDicomFile::Replace(const DicomTag& tag, |
1695 | 772 const std::string& utf8Value, |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
773 bool decodeDataUriScheme, |
3691
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
774 DicomReplaceMode mode, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
775 const std::string& privateCreator) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
776 { |
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
777 if (tag.GetElement() == 0x0000) |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
778 { |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
779 // Prevent manually modifying generic group length tags: This is |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
780 // handled by DCMTK serialization |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
781 return; |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
782 } |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
783 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
784 InvalidateCache(); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
785 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
786 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
787 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
788 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
789 // Either the tag was previously existing (and now removed), or |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
790 // the replace mode was set to "InsertIfAbsent" |
1979 | 791 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
792 if (decodeDataUriScheme && |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
793 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
794 tag == DICOM_TAG_PIXEL_DATA)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
795 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
796 if (EmbedContentInternal(utf8Value)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
797 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
798 return; |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
799 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
800 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
801 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
802 std::unique_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag, privateCreator)); |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
803 |
3368
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
804 if (!utf8Value.empty()) |
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
805 { |
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
806 bool hasCodeExtensions; |
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
807 Encoding encoding = DetectEncoding(hasCodeExtensions); |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
808 FromDcmtkBridge::FillElementWithString(*element, utf8Value, decodeDataUriScheme, encoding); |
3368
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
809 } |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
810 |
1979 | 811 InsertInternal(dicom, element.release()); |
812 UpdateStorageUid(tag, utf8Value, false); | |
813 } | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
814 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
815 |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
816 |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
817 void ParsedDicomFile::Replace(const DicomTag& tag, |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
818 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
819 bool decodeDataUriScheme, |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
820 DicomReplaceMode mode, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
821 const std::string& privateCreator) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
822 { |
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
823 if (tag.GetElement() == 0x0000) |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
824 { |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
825 // Prevent manually modifying generic group length tags: This is |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
826 // handled by DCMTK serialization |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
827 return; |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
828 } |
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
829 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
830 InvalidateCache(); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
831 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
832 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
833 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
834 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
835 // Either the tag was previously existing (and now removed), or |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
836 // the replace mode was set to "InsertIfAbsent" |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
837 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
838 if (decodeDataUriScheme && |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
839 value.type() == Json::stringValue && |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
840 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
841 tag == DICOM_TAG_PIXEL_DATA)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
842 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
843 if (EmbedContentInternal(value.asString())) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
844 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
845 return; |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
846 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
847 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
848 |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
849 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
850 Encoding encoding = DetectEncoding(hasCodeExtensions); |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
851 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
1979 | 852 |
853 if (tag == DICOM_TAG_SOP_CLASS_UID || | |
854 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
855 { |
1979 | 856 if (value.type() != Json::stringValue) |
857 { | |
858 throw OrthancException(ErrorCode_BadParameterType); | |
859 } | |
860 | |
861 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme); | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
862 } |
790 | 863 } |
864 } | |
865 | |
866 | |
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
867 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
868 void ParsedDicomFile::Answer(RestApiOutput& output) const |
790 | 869 { |
870 std::string serialized; | |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
871 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *GetDcmtkObjectConst().getDataset())) |
790 | 872 { |
3901
603a7b86fa5f
route "/instances/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
873 output.AnswerBuffer(serialized, MimeType_Dicom); |
790 | 874 } |
875 } | |
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
876 #endif |
790 | 877 |
878 | |
879 bool ParsedDicomFile::GetTagValue(std::string& value, | |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
880 const DicomTag& tag) const |
790 | 881 { |
882 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
883 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
884 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
885 if (tag.IsPrivate() || |
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1641
diff
changeset
|
886 FromDcmtkBridge::IsUnknownTag(tag) || |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
887 tag == DICOM_TAG_PIXEL_DATA || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
888 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
790 | 889 { |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
890 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
f796207e3df1
Fix replacement and insertion of private DICOM tags
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parents:
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diff
changeset
|
891 long unsigned int count = 0; |
790 | 892 |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
893 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
894 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
895 if (count > 0) |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
896 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
897 assert(data != NULL); |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
898 value.assign(reinterpret_cast<const char*>(data), count); |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
899 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
900 else |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
901 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
902 value.clear(); |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
903 } |
790 | 904 |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
905 return true; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
906 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
907 else |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
908 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
909 return false; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
910 } |
790 | 911 } |
912 else | |
913 { | |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
914 DcmElement* element = NULL; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
915 if (!dataset.findAndGetElement(k, element).good() || |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
916 element == NULL) |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
917 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
918 return false; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
919 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
920 |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
921 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
922 Encoding encoding = DetectEncoding(hasCodeExtensions); |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
923 |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
924 std::set<DicomTag> tmp; |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
925 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
926 (*element, DicomToJsonFlags_Default, |
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
927 0, encoding, hasCodeExtensions, tmp)); |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
928 |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
929 if (v.get() == NULL || |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
930 v->IsNull()) |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
931 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
932 value = ""; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
933 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
934 else |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
935 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
936 // TODO v->IsBinary() |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
937 value = v->GetContent(); |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
938 } |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
939 |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
940 return true; |
790 | 941 } |
942 } | |
943 | |
944 | |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
945 DicomInstanceHasher ParsedDicomFile::GetHasher() const |
790 | 946 { |
947 std::string patientId, studyUid, seriesUid, instanceUid; | |
948 | |
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
949 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID)) |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
950 { |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
951 /** |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
952 * If "PatientID" is absent, be tolerant by considering it |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
953 * equals the empty string, then proceed. In Orthanc <= 1.5.6, |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
954 * an exception "Bad file format" was generated. |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
955 * https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
3853 | 956 * https://hg.orthanc-server.com/orthanc/rev/4c45e018bd3de3cfa21d6efc6734673aaaee4435 |
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
957 **/ |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
958 patientId.clear(); |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
959 } |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
960 |
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
961 if (!GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || |
790 | 962 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || |
963 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
964 { | |
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
965 throw OrthancException(ErrorCode_BadFileFormat, "missing StudyInstanceUID, SeriesInstanceUID or SOPInstanceUID"); |
790 | 966 } |
967 | |
968 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
969 } | |
970 | |
971 | |
972 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
973 { | |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
974 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDcmtkObject().getDataset())) |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
975 { |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
976 throw OrthancException(ErrorCode_InternalError, "Cannot write DICOM file to memory"); |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
977 } |
790 | 978 } |
979 | |
980 | |
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
981 #if ORTHANC_SANDBOXED == 0 |
790 | 982 void ParsedDicomFile::SaveToFile(const std::string& path) |
983 { | |
984 // TODO Avoid using a temporary memory buffer, write directly on disk | |
985 std::string content; | |
986 SaveToMemoryBuffer(content); | |
2140 | 987 SystemToolbox::WriteFile(content, path); |
790 | 988 } |
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
989 #endif |
790 | 990 |
991 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
992 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
790 | 993 { |
794 | 994 pimpl_->file_.reset(new DcmFileFormat); |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
995 |
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
996 if (createIdentifiers) |
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
997 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
998 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
999 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1000 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1001 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
1002 } |
790 | 1003 } |
1004 | |
791 | 1005 |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1006 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1007 Encoding defaultEncoding, |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1008 bool permissive, |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1009 const std::string& defaultPrivateCreator, |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1010 const std::map<uint16_t, std::string>& privateCreators) |
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
1011 { |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1012 pimpl_->file_.reset(new DcmFileFormat); |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1013 InvalidateCache(); |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1014 |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1015 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1016 |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1017 if (tmp == NULL) |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1018 { |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1019 SetEncoding(defaultEncoding); |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1020 } |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1021 else if (tmp->IsBinary()) |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1022 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1023 throw OrthancException(ErrorCode_ParameterOutOfRange, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1024 "Invalid binary string in the SpecificCharacterSet (0008,0005) tag"); |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1025 } |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1026 else if (tmp->IsNull() || |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1027 tmp->GetContent().empty()) |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1028 { |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1029 SetEncoding(defaultEncoding); |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1030 } |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1031 else |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1032 { |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1033 Encoding encoding; |
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1034 |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1035 if (GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1036 { |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1037 SetEncoding(encoding); |
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1038 } |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1039 else |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1040 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1041 throw OrthancException(ErrorCode_ParameterOutOfRange, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1042 "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1043 tmp->GetContent() + "\""); |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1044 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1045 } |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1046 |
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1047 for (DicomMap::Content::const_iterator |
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1048 it = source.content_.begin(); it != source.content_.end(); ++it) |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1049 { |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1050 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1051 !it->second->IsNull()) |
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1052 { |
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1053 try |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1054 { |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1055 // Same as "ReplacePlainString()", but with support for private creator |
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1056 const std::string& utf8Value = it->second->GetContent(); |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1057 |
4039 | 1058 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(it->first.GetGroup()); |
1059 | |
1060 if (it->first.IsPrivate() && | |
1061 found != privateCreators.end()) | |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1062 { |
4039 | 1063 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, found->second); |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1064 } |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1065 else |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1066 { |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1067 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator); |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1068 } |
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1069 } |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1070 catch (OrthancException&) |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1071 { |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1072 if (!permissive) |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1073 { |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1074 throw; |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1075 } |
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1076 } |
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1077 } |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1078 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1079 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1080 |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1081 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1082 Encoding defaultEncoding, |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1083 bool permissive) : |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1084 pimpl_(new PImpl) |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1085 { |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1086 std::map<uint16_t, std::string> noPrivateCreators; |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1087 CreateFromDicomMap(map, defaultEncoding, permissive, "" /* no default private creator */, noPrivateCreators); |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1088 } |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1089 |
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
1090 |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1091 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1092 Encoding defaultEncoding, |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1093 bool permissive, |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1094 const std::string& defaultPrivateCreator, |
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1095 const std::map<uint16_t, std::string>& privateCreators) : |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1096 pimpl_(new PImpl) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1097 { |
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1098 CreateFromDicomMap(map, defaultEncoding, permissive, defaultPrivateCreator, privateCreators); |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1099 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1100 |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1101 |
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1102 ParsedDicomFile::ParsedDicomFile(const void* content, |
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1103 size_t size) : pimpl_(new PImpl) |
791 | 1104 { |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1105 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
791 | 1106 } |
1107 | |
794 | 1108 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
791 | 1109 { |
1110 if (content.size() == 0) | |
1111 { | |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1112 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
791 | 1113 } |
1114 else | |
1115 { | |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1116 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
791 | 1117 } |
1118 } | |
792 | 1119 |
1120 | |
4200 | 1121 ParsedDicomFile::ParsedDicomFile(const ParsedDicomFile& other, |
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1122 bool keepSopInstanceUid) : |
794 | 1123 pimpl_(new PImpl) |
792 | 1124 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1125 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.GetDcmtkObjectConst().clone())); |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1126 |
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1127 if (!keepSopInstanceUid) |
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1128 { |
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1129 // Create a new instance-level identifier |
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1130 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1131 } |
792 | 1132 } |
1133 | |
1134 | |
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1135 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1136 { |
6a2d507ef064
getting rid of opaque data structures
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parents:
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diff
changeset
|
1137 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
6a2d507ef064
getting rid of opaque data structures
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parents:
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diff
changeset
|
1138 } |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1139 |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1140 |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1141 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
6a2d507ef064
getting rid of opaque data structures
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changeset
|
1142 { |
6a2d507ef064
getting rid of opaque data structures
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diff
changeset
|
1143 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1144 } |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1145 |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1146 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1147 ParsedDicomFile::ParsedDicomFile(DcmFileFormat* dicom) : pimpl_(new PImpl) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
1148 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
1149 pimpl_->file_.reset(dicom); // No cloning |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
1150 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
1151 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1152 |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1153 DcmFileFormat& ParsedDicomFile::GetDcmtkObjectConst() const |
793 | 1154 { |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1155 if (pimpl_->file_.get() == NULL) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1156 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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diff
changeset
|
1157 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
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3912
diff
changeset
|
1158 "ReleaseDcmtkObject() was called"); |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
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3912
diff
changeset
|
1159 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1160 else |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1161 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1162 return *pimpl_->file_; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1163 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1164 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1165 |
4297 | 1166 ParsedDicomFile *ParsedDicomFile::AcquireDcmtkObject(DcmFileFormat *dicom) // No clone here |
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1167 { |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1168 return new ParsedDicomFile(dicom); |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1169 } |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1170 |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1171 DcmFileFormat &ParsedDicomFile::GetDcmtkObject() |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1172 { |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1173 return GetDcmtkObjectConst(); |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1174 } |
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1175 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1176 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1177 DcmFileFormat* ParsedDicomFile::ReleaseDcmtkObject() |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1178 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1179 if (pimpl_->file_.get() == NULL) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1180 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1181 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1182 "ReleaseDcmtkObject() was called"); |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1183 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1184 else |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1185 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1186 pimpl_->frameIndex_.reset(NULL); |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1187 return pimpl_->file_.release(); |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1188 } |
793 | 1189 } |
1190 | |
1191 | |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1192 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) const |
793 | 1193 { |
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1194 return new ParsedDicomFile(*this, keepSopInstanceUid); |
793 | 1195 } |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1196 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1197 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1198 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1199 { |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1200 std::string mimeString, content; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1201 if (!Toolbox::DecodeDataUriScheme(mimeString, content, dataUriScheme)) |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1202 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1203 return false; |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1204 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1205 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1206 Toolbox::ToLowerCase(mimeString); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1207 MimeType mime = StringToMimeType(mimeString); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1208 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1209 switch (mime) |
1562 | 1210 { |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1211 case MimeType_Png: |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1212 #if ORTHANC_ENABLE_PNG == 1 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1213 EmbedImage(mime, content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1214 break; |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1215 #else |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1216 throw OrthancException(ErrorCode_NotImplemented, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1217 "Orthanc was compiled without support of PNG"); |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1218 #endif |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1219 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1220 case MimeType_Jpeg: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1221 #if ORTHANC_ENABLE_JPEG == 1 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1222 EmbedImage(mime, content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1223 break; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1224 #else |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1225 throw OrthancException(ErrorCode_NotImplemented, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1226 "Orthanc was compiled without support of JPEG"); |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1227 #endif |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1228 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1229 case MimeType_Pam: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1230 EmbedImage(mime, content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1231 break; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1232 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1233 case MimeType_Pdf: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1234 EmbedPdf(content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1235 break; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1236 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1237 default: |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1238 throw OrthancException(ErrorCode_NotImplemented, |
2989 | 1239 "Unsupported MIME type for the content of a new DICOM file: " + |
1240 std::string(EnumerationToString(mime))); | |
1562 | 1241 } |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1242 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1243 return true; |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1244 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1245 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1246 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1247 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1248 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1249 if (!EmbedContentInternal(dataUriScheme)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1250 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1251 throw OrthancException(ErrorCode_BadFileFormat); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1252 } |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1253 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1254 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1255 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1256 void ParsedDicomFile::EmbedImage(MimeType mime, |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1257 const std::string& content) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1258 { |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1259 switch (mime) |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1260 { |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1261 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1262 #if ORTHANC_ENABLE_JPEG == 1 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1263 case MimeType_Jpeg: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1264 { |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1265 JpegReader reader; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1266 reader.ReadFromMemory(content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1267 EmbedImage(reader); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1268 break; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1269 } |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1270 #endif |
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1271 |
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1272 #if ORTHANC_ENABLE_PNG == 1 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1273 case MimeType_Png: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1274 { |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1275 PngReader reader; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1276 reader.ReadFromMemory(content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1277 EmbedImage(reader); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1278 break; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1279 } |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1280 #endif |
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1281 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1282 case MimeType_Pam: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1283 { |
4211
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1284 // "true" means "enforce memory alignment": This is slower, |
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1285 // but possibly avoids crash related to non-aligned memory access |
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1286 PamReader reader(true); |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1287 reader.ReadFromMemory(content); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1288 EmbedImage(reader); |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1289 break; |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1290 } |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1291 |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1292 default: |
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1293 throw OrthancException(ErrorCode_NotImplemented); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1294 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1295 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1296 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1297 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1298 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1299 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1300 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1301 accessor.GetFormat() != PixelFormat_Grayscale16 && |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1302 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1303 accessor.GetFormat() != PixelFormat_RGB24 && |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1304 accessor.GetFormat() != PixelFormat_RGBA32) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1305 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1306 throw OrthancException(ErrorCode_NotImplemented); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1307 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1308 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1309 InvalidateCache(); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1310 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1311 if (accessor.GetFormat() == PixelFormat_RGBA32) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1312 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1313 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1314 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1315 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1316 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1317 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1318 Remove(DICOM_TAG_PIXEL_DATA); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1319 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1320 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1321 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1322 |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1323 // The "Number of frames" must only be present in multi-frame images |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1324 //ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1325 |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1326 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1327 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1328 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1329 } |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1330 else |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1331 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1332 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1333 } |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1334 |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1335 unsigned int bytesPerPixel = 0; |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1336 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1337 switch (accessor.GetFormat()) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1338 { |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1339 case PixelFormat_Grayscale8: |
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1340 // By default, grayscale images are MONOCHROME2 |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1341 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1342 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1343 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1344 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1345 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1346 bytesPerPixel = 1; |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1347 break; |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1348 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1349 case PixelFormat_RGB24: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1350 case PixelFormat_RGBA32: |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1351 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1352 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1353 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1354 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1355 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1356 bytesPerPixel = 3; |
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1357 |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1358 // "Planar configuration" must only present if "Samples per |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1359 // Pixel" is greater than 1 |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1360 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1361 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1362 break; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1363 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1364 case PixelFormat_Grayscale16: |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1365 case PixelFormat_SignedGrayscale16: |
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1366 // By default, grayscale images are MONOCHROME2 |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1367 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1368 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1369 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1370 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1371 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1372 bytesPerPixel = 2; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1373 break; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1374 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1375 default: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1376 throw OrthancException(ErrorCode_NotImplemented); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1377 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1378 |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1379 assert(bytesPerPixel != 0); |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1380 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1381 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1382 DICOM_TAG_PIXEL_DATA.GetElement()); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1383 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1384 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1385 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1386 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1387 Uint8* target = NULL; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1388 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1389 |
4278
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1390 const unsigned int height = accessor.GetHeight(); |
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1391 const unsigned int width = accessor.GetWidth(); |
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1392 |
800
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1393 { |
4532
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1394 Uint8* q = target; |
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1395 for (unsigned int y = 0; y < height; y++) |
800
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1396 { |
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1397 switch (accessor.GetFormat()) |
800
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1398 { |
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1399 case PixelFormat_RGB24: |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1400 case PixelFormat_Grayscale8: |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1401 case PixelFormat_Grayscale16: |
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1402 case PixelFormat_SignedGrayscale16: |
800
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generation of DICOM images from PNG files
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parents:
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diff
changeset
|
1403 { |
4532
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1404 memcpy(q, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1405 q += pitch; |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1406 break; |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1407 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1408 |
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1409 case PixelFormat_RGBA32: |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1410 { |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1411 // The alpha channel is not supported by the DICOM standard |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1412 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1413 for (unsigned int x = 0; x < width; x++, q += 3, source += 4) |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1414 { |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1415 q[0] = source[0]; |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1416 q[1] = source[1]; |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1417 q[2] = source[2]; |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1418 } |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1419 |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1420 break; |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1421 } |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1422 |
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1423 default: |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1424 throw OrthancException(ErrorCode_NotImplemented); |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1425 } |
800
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1426 } |
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generation of DICOM images from PNG files
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parents:
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diff
changeset
|
1427 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1428 |
4532
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fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1429 static const Endianness ENDIANNESS = Toolbox::DetectEndianness(); |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1430 if (ENDIANNESS == Endianness_Big && |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1431 (accessor.GetFormat() == PixelFormat_Grayscale16 || |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1432 accessor.GetFormat() == PixelFormat_SignedGrayscale16)) |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1433 { |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1434 // New in Orthanc 1.9.1 |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1435 assert(pitch % 2 == 0); |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1436 swapBytes(target, accessor.GetHeight() * pitch, sizeof(uint16_t)); |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1437 } |
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1438 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1439 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good()) |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1440 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1441 throw OrthancException(ErrorCode_InternalError); |
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1442 } |
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generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1443 } |
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1444 |
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1445 |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1446 Encoding ParsedDicomFile::DetectEncoding(bool& hasCodeExtensions) const |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1447 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1448 return FromDcmtkBridge::DetectEncoding(hasCodeExtensions, |
4203
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improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1449 *GetDcmtkObjectConst().getDataset(), |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1450 GetDefaultDicomEncoding()); |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1451 } |
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1452 |
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1453 |
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1454 void ParsedDicomFile::SetEncoding(Encoding encoding) |
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1455 { |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1456 if (encoding == Encoding_Windows1251) |
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1457 { |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1458 // This Cyrillic codepage is not officially supported by the |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1459 // DICOM standard. Do not set the SpecificCharacterSet tag. |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1460 return; |
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1461 } |
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1462 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1463 std::string s = GetDicomSpecificCharacterSet(encoding); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1464 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1465 } |
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1466 |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1467 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1468 DicomToJsonFormat format, |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1469 DicomToJsonFlags flags, |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1470 unsigned int maxStringLength) const |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1471 { |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1472 std::set<DicomTag> ignoreTagLength; |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1473 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1474 format, flags, maxStringLength, ignoreTagLength); |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1475 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1476 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1477 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1478 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1479 DicomToJsonFormat format, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1480 DicomToJsonFlags flags, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1481 unsigned int maxStringLength, |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1482 const std::set<DicomTag>& ignoreTagLength) const |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1483 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1484 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1485 format, flags, maxStringLength, ignoreTagLength); |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1486 } |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1487 |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1488 |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1489 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1490 DicomToJsonFormat format) const |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1491 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1492 FromDcmtkBridge::ExtractHeaderAsJson(target, *GetDcmtkObjectConst().getMetaInfo(), format, DicomToJsonFlags_None, 0); |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1493 } |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1494 |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1495 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1496 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1497 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1498 DcmTag key(tag.GetGroup(), tag.GetElement()); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1499 return GetDcmtkObjectConst().getDataset()->tagExists(key); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1500 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1501 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1502 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1503 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1504 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1505 if (pdf.size() < 5 || // (*) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1506 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1507 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1508 throw OrthancException(ErrorCode_BadFileFormat, "Not a PDF file"); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1509 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1510 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1511 InvalidateCache(); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1512 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1513 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1514 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1515 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1516 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), MIME_PDF); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1517 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1518 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1519 std::unique_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1520 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1521 size_t s = pdf.size(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1522 if (s & 1) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1523 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1524 // The size of the buffer must be even |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1525 s += 1; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1526 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1527 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1528 Uint8* bytes = NULL; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1529 OFCondition result = element->createUint8Array(s, bytes); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1530 if (!result.good() || bytes == NULL) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1531 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1532 throw OrthancException(ErrorCode_NotEnoughMemory); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1533 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1534 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1535 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1536 bytes[s - 1] = 0; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1537 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1538 memcpy(bytes, pdf.c_str(), pdf.size()); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1539 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1540 DcmPolymorphOBOW* obj = element.release(); |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1541 result = GetDcmtkObject().getDataset()->insert(obj); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1542 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1543 if (!result.good()) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1544 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1545 delete obj; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1546 throw OrthancException(ErrorCode_NotEnoughMemory); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1547 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1548 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1549 |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1550 |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1551 bool ParsedDicomFile::ExtractPdf(std::string& pdf) const |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1552 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1553 std::string sop, mime; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1554 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1555 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1556 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1557 sop != UID_EncapsulatedPDFStorage || |
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1558 mime != MIME_PDF) |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1559 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1560 return false; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1561 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1562 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1563 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1564 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1565 return false; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1566 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1567 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1568 // Strip the possible pad byte at the end of file, because the |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1569 // encapsulated documents must always have an even length. The PDF |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1570 // format expects files to end with %%EOF followed by CR/LF. If |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1571 // the last character of the file is not a CR or LF, we assume it |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1572 // is a pad byte and remove it. |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1573 if (pdf.size() > 0) |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1574 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1575 char last = *pdf.rbegin(); |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1576 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1577 if (last != 10 && last != 13) |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1578 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1579 pdf.resize(pdf.size() - 1); |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1580 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1581 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1582 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1583 return true; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1584 } |
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1585 |
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1586 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1587 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1588 DicomFromJsonFlags flags, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1589 const std::string& privateCreator) |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1590 { |
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1591 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1592 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1593 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1594 std::unique_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1595 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding())); |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1596 |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1597 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1598 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1599 for (size_t i = 0; i < tags.size(); i++) |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1600 { |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1601 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1602 const Json::Value& value = json[tags[i]]; |
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1603 |
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1604 if (tag == DICOM_TAG_PIXEL_DATA || |
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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1605 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
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ParsedDicomFile::CreateFromJson
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1606 { |
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ParsedDicomFile::CreateFromJson
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|
1607 if (value.type() != Json::stringValue) |
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1608 { |
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ParsedDicomFile::CreateFromJson
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|
1609 throw OrthancException(ErrorCode_BadRequest); |
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ParsedDicomFile::CreateFromJson
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1610 } |
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1611 else |
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ParsedDicomFile::CreateFromJson
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|
1612 { |
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ParsedDicomFile::CreateFromJson
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|
1613 result->EmbedContent(value.asString()); |
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1614 } |
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ParsedDicomFile::CreateFromJson
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1615 } |
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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1616 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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ParsedDicomFile::CreateFromJson
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diff
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|
1617 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1618 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent, privateCreator); |
1818
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ParsedDicomFile::CreateFromJson
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diff
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|
1619 } |
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ParsedDicomFile::CreateFromJson
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|
1620 } |
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|
1621 |
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1622 return result.release(); |
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1623 } |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
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|
1624 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1625 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
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|
1626 void ParsedDicomFile::GetRawFrame(std::string& target, |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1627 MimeType& mime, |
4203
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Sebastien Jodogne <s.jodogne@gmail.com>
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4200
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|
1628 unsigned int frameId) const |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1629 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1630 if (pimpl_->frameIndex_.get() == NULL) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1631 { |
3745
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Sebastien Jodogne <s.jodogne@gmail.com>
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3712
diff
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|
1632 assert(pimpl_->file_ != NULL && |
4203
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1633 GetDcmtkObjectConst().getDataset() != NULL); |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1634 pimpl_->frameIndex_.reset(new DicomFrameIndex(*GetDcmtkObjectConst().getDataset())); |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1635 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1913
diff
changeset
|
1636 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
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|
1637 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1638 |
4203
4d42408da117
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1639 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1640 switch (transferSyntax) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1641 { |
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1642 case EXS_JPEGProcess1: |
2908
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new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1643 mime = MimeType_Jpeg; |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1644 break; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1645 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1646 case EXS_JPEG2000LosslessOnly: |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1647 case EXS_JPEG2000: |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1648 mime = MimeType_Jpeg2000; |
2016 | 1649 break; |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1650 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1651 default: |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1652 mime = MimeType_Binary; |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1653 break; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1654 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1655 } |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1656 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1657 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1658 void ParsedDicomFile::InvalidateCache() |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1659 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1660 pimpl_->frameIndex_.reset(NULL); |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1661 } |
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1662 |
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1663 |
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1664 unsigned int ParsedDicomFile::GetFramesCount() const |
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1665 { |
3745
113a7b994a12
extracting the raw frame in the transcoder
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3712
diff
changeset
|
1666 assert(pimpl_->file_ != NULL && |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
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diff
changeset
|
1667 GetDcmtkObjectConst().getDataset() != NULL); |
4d42408da117
improving const-correctness in ParsedDicomFile
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parents:
4200
diff
changeset
|
1668 return DicomFrameIndex::GetFramesCount(*GetDcmtkObjectConst().getDataset()); |
1950
533ff46e944b
return a single raw frame from DICOM videos
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parents:
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diff
changeset
|
1669 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1670 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1671 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1672 void ParsedDicomFile::ChangeEncoding(Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1673 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1674 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1675 Encoding source = DetectEncoding(hasCodeExtensions); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1676 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1677 if (source != target) // Avoid unnecessary conversion |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1678 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1679 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1680 FromDcmtkBridge::ChangeStringEncoding(*GetDcmtkObject().getDataset(), source, hasCodeExtensions, target); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1681 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1682 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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parents:
2207
diff
changeset
|
1683 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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diff
changeset
|
1684 |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
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parents:
4137
diff
changeset
|
1685 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
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diff
changeset
|
1686 unsigned int maxTagLength) const |
2209
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1687 { |
4137
6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
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4136
diff
changeset
|
1688 std::set<DicomTag> ignoreTagLength; |
4203
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improving const-correctness in ParsedDicomFile
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parents:
4200
diff
changeset
|
1689 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1690 maxTagLength, ignoreTagLength); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1691 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2207
diff
changeset
|
1692 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1693 |
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1694 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1695 unsigned int maxTagLength, |
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1696 const std::set<DicomTag>& ignoreTagLength) const |
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
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3446
diff
changeset
|
1697 { |
4203
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parents:
4200
diff
changeset
|
1698 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1699 maxTagLength, ignoreTagLength); |
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1700 } |
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1701 |
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1702 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1703 bool ParsedDicomFile::LookupTransferSyntax(DicomTransferSyntax& result) const |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1704 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1705 return FromDcmtkBridge::LookupOrthancTransferSyntax(result, GetDcmtkObjectConst()); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1706 } |
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1707 |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1708 |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1709 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1710 { |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1711 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1712 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1713 |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1714 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1715 |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1716 const char *c = NULL; |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1717 if (dataset.findAndGetString(k, c).good() && |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1718 c != NULL) |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1719 { |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1720 result = StringToPhotometricInterpretation(c); |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1721 return true; |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1722 } |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1723 else |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1724 { |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1725 return false; |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1726 } |
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1727 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1728 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1729 |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1730 void ParsedDicomFile::Apply(ITagVisitor& visitor) const |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1731 { |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1732 FromDcmtkBridge::Apply(*GetDcmtkObjectConst().getDataset(), visitor, GetDefaultDicomEncoding()); |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1733 } |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1734 |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1735 |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1736 ImageAccessor* ParsedDicomFile::DecodeFrame(unsigned int frame) const |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1737 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1738 if (GetDcmtkObjectConst().getDataset() == NULL) |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1739 { |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1740 throw OrthancException(ErrorCode_InternalError); |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1741 } |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1742 else |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1743 { |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1744 return DicomImageDecoder::Decode(*GetDcmtkObjectConst().getDataset(), frame); |
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1745 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1746 } |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1747 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1748 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1749 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1750 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore |
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1751 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1752 DicomToJsonFormat format, |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1753 DicomToJsonFlags flags, |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1754 unsigned int maxStringLength) |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1755 { |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1756 return const_cast<const ParsedDicomFile&>(*this).DatasetToJson(target, format, flags, maxStringLength); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1757 } |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1758 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1759 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1760 { |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1761 return const_cast<ParsedDicomFile&>(*this).GetDcmtkObject(); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1762 } |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1763 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1764 void ParsedDicomFile::Apply(ITagVisitor& visitor) |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1765 { |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1766 const_cast<const ParsedDicomFile&>(*this).Apply(visitor); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1767 } |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1768 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1769 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1770 { |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1771 return const_cast<const ParsedDicomFile&>(*this).Clone(keepSopInstanceUid); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1772 } |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1773 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1774 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1775 { |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1776 return const_cast<const ParsedDicomFile&>(*this).LookupTransferSyntax(result); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1777 } |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1778 |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1779 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) const |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1780 { |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1781 DicomTransferSyntax s; |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1782 if (LookupTransferSyntax(s)) |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1783 { |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1784 result = GetTransferSyntaxUid(s); |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1785 return true; |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1786 } |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1787 else |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1788 { |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1789 return false; |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1790 } |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1791 } |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1792 |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1793 bool ParsedDicomFile::GetTagValue(std::string& value, |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1794 const DicomTag& tag) |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1795 { |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1796 return const_cast<const ParsedDicomFile&>(*this).GetTagValue(value, tag); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1797 } |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1798 #endif |
790 | 1799 } |