Mercurial > hg > orthanc
annotate Core/DicomParsing/FromDcmtkBridge.cpp @ 3198:7724ed267b5c
unit testing dicomweb conversion
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 06 Feb 2019 07:28:58 +0100 |
parents | 880e4161c312 |
children | 9316f341e40f |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
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33 |
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34 #include "../PrecompiledHeaders.h" |
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35 |
71 | 36 #ifndef NOMINMAX |
37 #define NOMINMAX | |
38 #endif | |
0 | 39 |
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40 #if !defined(ORTHANC_SANDBOXED) |
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41 # error The macro ORTHANC_SANDBOXED must be defined |
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42 #endif |
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43 |
3117 | 44 #if !defined(DCMTK_VERSION_NUMBER) |
45 # error The macro DCMTK_VERSION_NUMBER must be defined | |
46 #endif | |
47 | |
0 | 48 #include "FromDcmtkBridge.h" |
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49 #include "ToDcmtkBridge.h" |
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50 #include "../Logging.h" |
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51 #include "../Toolbox.h" |
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52 #include "../OrthancException.h" |
0 | 53 |
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54 #if ORTHANC_SANDBOXED == 0 |
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55 # include "../TemporaryFile.h" |
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56 #endif |
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57 |
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58 #include <list> |
71 | 59 #include <limits> |
60 | |
0 | 61 #include <boost/lexical_cast.hpp> |
1656 | 62 #include <boost/filesystem.hpp> |
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63 #include <boost/algorithm/string/predicate.hpp> |
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64 #include <boost/algorithm/string/join.hpp> |
0 | 65 |
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66 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 67 #include <dcmtk/dcmdata/dcdicent.h> |
68 #include <dcmtk/dcmdata/dcdict.h> | |
69 #include <dcmtk/dcmdata/dcfilefo.h> | |
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70 #include <dcmtk/dcmdata/dcostrmb.h> |
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71 #include <dcmtk/dcmdata/dcpixel.h> |
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72 #include <dcmtk/dcmdata/dcuid.h> |
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73 #include <dcmtk/dcmdata/dcistrmb.h> |
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74 |
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75 #include <dcmtk/dcmdata/dcvrae.h> |
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76 #include <dcmtk/dcmdata/dcvras.h> |
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77 #include <dcmtk/dcmdata/dcvrat.h> |
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78 #include <dcmtk/dcmdata/dcvrcs.h> |
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79 #include <dcmtk/dcmdata/dcvrda.h> |
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80 #include <dcmtk/dcmdata/dcvrds.h> |
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81 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 82 #include <dcmtk/dcmdata/dcvrfd.h> |
83 #include <dcmtk/dcmdata/dcvrfl.h> | |
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84 #include <dcmtk/dcmdata/dcvris.h> |
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85 #include <dcmtk/dcmdata/dcvrlo.h> |
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86 #include <dcmtk/dcmdata/dcvrlt.h> |
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87 #include <dcmtk/dcmdata/dcvrpn.h> |
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88 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 89 #include <dcmtk/dcmdata/dcvrsl.h> |
90 #include <dcmtk/dcmdata/dcvrss.h> | |
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91 #include <dcmtk/dcmdata/dcvrst.h> |
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92 #include <dcmtk/dcmdata/dcvrtm.h> |
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93 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 94 #include <dcmtk/dcmdata/dcvrul.h> |
95 #include <dcmtk/dcmdata/dcvrus.h> | |
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96 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 97 |
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98 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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99 # include <EmbeddedResources.h> |
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100 #endif |
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101 |
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102 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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103 # include <dcmtk/dcmjpeg/djdecode.h> |
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104 #endif |
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105 |
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106 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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107 # include <dcmtk/dcmjpls/djdecode.h> |
1930 | 108 #endif |
109 | |
110 | |
62 | 111 namespace Orthanc |
0 | 112 { |
1656 | 113 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
114 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
115 EmbeddedResources::FileResourceId resource) | |
116 { | |
2017 | 117 std::string content; |
118 EmbeddedResources::GetFileResource(content, resource); | |
1656 | 119 |
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120 #if ORTHANC_SANDBOXED == 0 |
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121 TemporaryFile tmp; |
2017 | 122 tmp.Write(content); |
1656 | 123 |
124 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
125 { | |
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126 throw OrthancException(ErrorCode_InternalError, |
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127 "Cannot read embedded dictionary. Under Windows, make sure that " |
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128 "your TEMP directory does not contain special characters."); |
1656 | 129 } |
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130 #else |
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131 if (!dictionary.loadFromMemory(content)) |
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132 { |
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133 throw OrthancException(ErrorCode_InternalError, |
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134 "Cannot read embedded dictionary. Under Windows, make sure that " |
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135 "your TEMP directory does not contain special characters."); |
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136 } |
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137 #endif |
1656 | 138 } |
139 | |
140 #else | |
141 static void LoadExternalDictionary(DcmDataDictionary& dictionary, | |
142 const std::string& directory, | |
143 const std::string& filename) | |
144 { | |
145 boost::filesystem::path p = directory; | |
146 p = p / filename; | |
147 | |
148 LOG(WARNING) << "Loading the external DICOM dictionary " << p; | |
149 | |
150 if (!dictionary.loadDictionary(p.string().c_str())) | |
151 { | |
152 throw OrthancException(ErrorCode_InternalError); | |
153 } | |
154 } | |
155 #endif | |
156 | |
157 | |
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158 namespace |
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159 { |
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160 class DictionaryLocker |
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161 { |
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162 private: |
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163 DcmDataDictionary& dictionary_; |
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164 |
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165 public: |
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166 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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167 { |
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168 } |
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169 |
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170 ~DictionaryLocker() |
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171 { |
3117 | 172 #if DCMTK_VERSION_NUMBER >= 364 |
173 dcmDataDict.wrunlock(); | |
174 #else | |
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175 dcmDataDict.unlock(); |
3117 | 176 #endif |
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177 } |
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178 |
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179 DcmDataDictionary& operator*() |
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180 { |
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181 return dictionary_; |
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182 } |
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183 |
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184 DcmDataDictionary* operator->() |
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185 { |
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186 return &dictionary_; |
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187 } |
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188 }; |
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189 |
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190 |
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191 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter) \ |
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192 \ |
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193 struct converter \ |
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194 { \ |
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195 typedef cType CType; \ |
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196 \ |
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197 static bool Apply(CType& result, \ |
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198 DcmElement& element, \ |
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199 size_t i) \ |
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200 { \ |
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201 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \ |
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202 } \ |
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203 }; |
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204 |
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205 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32) |
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206 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16) |
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207 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32) |
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208 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16) |
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209 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32) |
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210 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64) |
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211 |
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212 |
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213 template <typename F> |
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214 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element) |
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215 { |
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216 F f; |
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217 typename F::CType value; |
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218 |
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219 if (element.getLength() > sizeof(typename F::CType) |
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220 && (element.getLength() % sizeof(typename F::CType)) == 0) |
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221 { |
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222 size_t count = element.getLength() / sizeof(typename F::CType); |
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223 std::vector<std::string> strings; |
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224 for (size_t i = 0; i < count; i++) { |
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225 if (f.Apply(value, element, i)) { |
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226 strings.push_back(boost::lexical_cast<std::string>(value)); |
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227 } |
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228 } |
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229 return new DicomValue(boost::algorithm::join(strings, "\\"), false); |
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230 } |
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231 else if (f.Apply(value, element, 0)) { |
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232 return new DicomValue(boost::lexical_cast<std::string>(value), false); |
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233 } |
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234 else { |
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235 return new DicomValue; |
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236 } |
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237 } |
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238 |
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239 } |
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240 |
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241 |
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242 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 243 { |
2296 | 244 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER; |
245 | |
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246 { |
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247 DictionaryLocker locker; |
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248 |
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249 locker->clear(); |
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251 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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252 LOG(INFO) << "Loading the embedded dictionaries"; |
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253 /** |
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254 * Do not load DICONDE dictionary, it breaks the other tags. The |
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255 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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256 * dictionary is not loaded by storescu. |
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257 **/ |
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258 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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260 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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261 |
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262 if (loadPrivateDictionary) |
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263 { |
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264 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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265 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
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266 } |
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267 else |
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268 { |
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269 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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270 } |
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2364 | 272 #elif defined(__linux__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) || defined(__OpenBSD__) |
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273 std::string path = DCMTK_DICTIONARY_DIR; |
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275 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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276 if (env != NULL) |
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277 { |
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278 path = std::string(env); |
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279 } |
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281 LoadExternalDictionary(*locker, path, "dicom.dic"); |
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282 |
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283 if (loadPrivateDictionary) |
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284 { |
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285 LoadExternalDictionary(*locker, path, "private.dic"); |
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286 } |
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287 else |
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288 { |
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289 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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290 } |
1656 | 291 |
292 #else | |
293 #error Support your platform here | |
294 #endif | |
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295 } |
1656 | 296 |
297 /* make sure data dictionary is loaded */ | |
298 if (!dcmDataDict.isDictionaryLoaded()) | |
299 { | |
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300 throw OrthancException(ErrorCode_InternalError, |
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301 "No DICOM dictionary loaded, check environment variable: " + |
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302 std::string(DCM_DICT_ENVIRONMENT_VARIABLE)); |
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304 | |
305 { | |
306 // Test the dictionary with a simple DICOM tag | |
307 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
308 if (key.getEVR() != EVR_DS) | |
309 { | |
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310 throw OrthancException(ErrorCode_InternalError, |
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311 "The DICOM dictionary has not been correctly read"); |
1656 | 312 } |
313 } | |
314 } | |
315 | |
316 | |
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317 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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318 ValueRepresentation vr, |
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319 const std::string& name, |
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320 unsigned int minMultiplicity, |
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321 unsigned int maxMultiplicity, |
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322 const std::string& privateCreator) |
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323 { |
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324 if (minMultiplicity < 1) |
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325 { |
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326 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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327 } |
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328 |
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329 bool arbitrary = false; |
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330 if (maxMultiplicity == 0) |
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331 { |
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332 maxMultiplicity = DcmVariableVM; |
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333 arbitrary = true; |
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334 } |
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335 else if (maxMultiplicity < minMultiplicity) |
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336 { |
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337 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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338 } |
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339 |
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340 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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341 |
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342 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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343 << name << " (multiplicity: " << minMultiplicity << "-" |
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344 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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345 |
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346 std::auto_ptr<DcmDictEntry> entry; |
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347 if (privateCreator.empty()) |
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348 { |
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349 if (tag.GetGroup() % 2 == 1) |
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350 { |
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351 char buf[128]; |
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352 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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353 "but no private creator was associated with it", |
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354 tag.GetGroup(), tag.GetElement()); |
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355 LOG(WARNING) << buf; |
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356 } |
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357 |
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358 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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359 tag.GetElement(), |
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360 evr, name.c_str(), |
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361 static_cast<int>(minMultiplicity), |
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362 static_cast<int>(maxMultiplicity), |
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363 NULL /* version */, |
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364 OFTrue /* doCopyString */, |
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365 NULL /* private creator */)); |
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366 } |
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367 else |
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368 { |
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369 // "Private Data Elements have an odd Group Number that is not |
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370 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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371 // (FFFF,eeee)." |
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372 if (tag.GetGroup() % 2 == 0 /* even */ || |
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373 tag.GetGroup() == 0x0001 || |
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374 tag.GetGroup() == 0x0003 || |
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375 tag.GetGroup() == 0x0005 || |
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376 tag.GetGroup() == 0x0007 || |
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377 tag.GetGroup() == 0xffff) |
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378 { |
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379 char buf[128]; |
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380 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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381 tag.GetGroup(), tag.GetElement()); |
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382 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf)); |
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383 } |
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384 |
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385 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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386 tag.GetElement(), |
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387 evr, name.c_str(), |
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388 static_cast<int>(minMultiplicity), |
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389 static_cast<int>(maxMultiplicity), |
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390 "private" /* version */, |
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391 OFTrue /* doCopyString */, |
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392 privateCreator.c_str())); |
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393 } |
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394 |
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395 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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396 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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397 |
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398 { |
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399 DictionaryLocker locker; |
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400 |
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401 if (locker->findEntry(name.c_str())) |
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402 { |
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403 throw OrthancException(ErrorCode_AlreadyExistingTag, |
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404 "Cannot register two tags with the same symbolic name \"" + name + "\""); |
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405 } |
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406 |
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407 locker->addEntry(entry.release()); |
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408 } |
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409 } |
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410 |
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411 |
1936 | 412 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset, |
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413 Encoding defaultEncoding) |
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414 { |
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415 Encoding encoding = defaultEncoding; |
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416 |
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417 OFString tmp; |
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418 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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419 { |
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420 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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421 |
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422 if (characterSet.empty()) |
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423 { |
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424 // Empty specific character set tag: Use the default encoding |
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426 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
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428 // The specific character set is supported by the Orthanc core |
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430 else |
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432 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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433 << ", fallback to ASCII (remove all special characters)"; |
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434 encoding = Encoding_Ascii; |
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435 } |
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436 } |
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437 else |
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438 { |
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439 // No specific character set tag: Use the default encoding |
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440 } |
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441 |
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442 return encoding; |
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443 } |
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444 |
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445 |
2125 | 446 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
447 DcmItem& dataset, | |
448 unsigned int maxStringLength, | |
449 Encoding defaultEncoding) | |
0 | 450 { |
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451 std::set<DicomTag> ignoreTagLength; |
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452 |
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453 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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454 |
0 | 455 target.Clear(); |
456 for (unsigned long i = 0; i < dataset.card(); i++) | |
457 { | |
458 DcmElement* element = dataset.getElement(i); | |
459 if (element && element->isLeaf()) | |
460 { | |
461 target.SetValue(element->getTag().getGTag(), | |
462 element->getTag().getETag(), | |
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463 ConvertLeafElement(*element, DicomToJsonFlags_Default, |
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464 maxStringLength, encoding, ignoreTagLength)); |
0 | 465 } |
466 } | |
467 } | |
468 | |
469 | |
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470 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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471 { |
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472 return DicomTag(tag.getGTag(), tag.getETag()); |
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473 } |
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474 |
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475 |
0 | 476 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
477 { | |
478 return DicomTag(element.getGTag(), element.getETag()); | |
479 } | |
480 | |
481 | |
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482 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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483 DicomToJsonFlags flags, |
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484 unsigned int maxStringLength, |
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485 Encoding encoding, |
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486 const std::set<DicomTag>& ignoreTagLength) |
0 | 487 { |
488 if (!element.isLeaf()) | |
489 { | |
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490 // This function is only applicable to leaf elements |
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491 throw OrthancException(ErrorCode_BadParameterType); |
0 | 492 } |
493 | |
1818
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494 char *c = NULL; |
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495 if (element.isaString() && |
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496 element.getString(c).good()) |
0 | 497 { |
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498 if (c == NULL) // This case corresponds to the empty string |
0 | 499 { |
1818
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500 return new DicomValue("", false); |
0 | 501 } |
502 else | |
503 { | |
1818
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504 std::string s(c); |
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505 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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506 |
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507 if (maxStringLength != 0 && |
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508 utf8.size() > maxStringLength && |
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509 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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510 { |
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511 return new DicomValue; // Too long, create a NULL value |
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512 } |
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513 else |
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514 { |
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515 return new DicomValue(utf8, false); |
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516 } |
0 | 517 } |
518 } | |
519 | |
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520 |
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521 if (element.getVR() == EVR_UN) |
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522 { |
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523 // Unknown value representation: Lookup in the dictionary. This |
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524 // is notably the case for private tags registered with the |
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525 // "Dictionary" configuration option. |
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526 DictionaryLocker locker; |
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527 |
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528 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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529 element.getTag().getPrivateCreator()); |
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530 if (entry != NULL && |
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531 entry->getVR().isaString()) |
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532 { |
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533 Uint8* data = NULL; |
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534 |
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535 // At (*), we do not try and convert to UTF-8, as nothing says |
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536 // the encoding of the private tag is the same as that of the |
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537 // remaining of the DICOM dataset. Only go for ASCII strings. |
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538 |
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539 if (element.getUint8Array(data) == EC_Normal && |
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540 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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541 { |
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542 if (data == NULL) |
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543 { |
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544 return new DicomValue("", false); // Empty string |
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545 } |
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546 else if (maxStringLength != 0 && |
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547 element.getLength() > maxStringLength && |
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548 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
2129
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549 { |
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550 return new DicomValue; // Too long, create a NULL value |
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551 } |
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552 else |
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553 { |
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554 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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555 return new DicomValue(s, false); |
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556 } |
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557 } |
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558 } |
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559 } |
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560 |
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561 |
0 | 562 try |
563 { | |
564 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
565 switch (element.getVR()) | |
566 { | |
567 | |
568 /** | |
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569 * Deal with binary data (including PixelData). |
0 | 570 **/ |
306
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571 |
302
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572 case EVR_OB: // other byte |
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573 case EVR_OF: // other float |
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574 case EVR_OW: // other word |
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575 case EVR_UN: // unknown value representation |
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576 case EVR_ox: // OB or OW depending on context |
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577 case EVR_DS: // decimal string |
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578 case EVR_IS: // integer string |
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579 case EVR_AS: // age string |
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580 case EVR_DA: // date string |
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581 case EVR_DT: // date time string |
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582 case EVR_TM: // time string |
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583 case EVR_AE: // application entity title |
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584 case EVR_CS: // code string |
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585 case EVR_SH: // short string |
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586 case EVR_LO: // long string |
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587 case EVR_ST: // short text |
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588 case EVR_LT: // long text |
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589 case EVR_UT: // unlimited text |
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590 case EVR_PN: // person name |
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591 case EVR_UI: // unique identifier |
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592 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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593 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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594 { |
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595 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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596 { |
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597 Uint8* data = NULL; |
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598 if (element.getUint8Array(data) == EC_Normal) |
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599 { |
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600 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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601 } |
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602 } |
0 | 603 |
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604 return new DicomValue; |
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605 } |
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606 |
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607 /** |
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608 * Numeric types |
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609 **/ |
0 | 610 |
302
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611 case EVR_SL: // signed long |
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612 { |
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613 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element); |
302
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614 } |
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615 |
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616 case EVR_SS: // signed short |
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617 { |
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618 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element); |
302
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619 } |
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620 |
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621 case EVR_UL: // unsigned long |
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622 { |
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623 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element); |
302
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624 } |
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625 |
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626 case EVR_US: // unsigned short |
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627 { |
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628 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element); |
302
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629 } |
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630 |
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631 case EVR_FL: // float single-precision |
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632 { |
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633 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element); |
302
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634 } |
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635 |
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636 case EVR_FD: // float double-precision |
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637 { |
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638 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element); |
1131 | 639 } |
640 | |
641 | |
642 /** | |
643 * Attribute tag. | |
644 **/ | |
645 | |
646 case EVR_AT: | |
647 { | |
1147 | 648 DcmTagKey tag; |
649 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
650 { | |
651 DicomTag t(tag.getGroup(), tag.getElement()); | |
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652 return new DicomValue(t.Format(), false); |
1147 | 653 } |
1131 | 654 else |
1147 | 655 { |
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656 return new DicomValue; |
1147 | 657 } |
302
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658 } |
0 | 659 |
660 | |
661 /** | |
302
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662 * Sequence types, should never occur at this point because of |
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663 * "element.isLeaf()". |
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664 **/ |
0 | 665 |
302
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666 case EVR_SQ: // sequence of items |
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667 return new DicomValue; |
0 | 668 |
669 | |
302
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670 /** |
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671 * Internal to DCMTK. |
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672 **/ |
0 | 673 |
302
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674 case EVR_xs: // SS or US depending on context |
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675 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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676 case EVR_na: // na="not applicable", for data which has no VR |
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677 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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678 case EVR_item: // used internally for items |
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679 case EVR_metainfo: // used internally for meta info datasets |
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680 case EVR_dataset: // used internally for datasets |
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681 case EVR_fileFormat: // used internally for DICOM files |
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682 case EVR_dicomDir: // used internally for DICOMDIR objects |
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683 case EVR_dirRecord: // used internally for DICOMDIR records |
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684 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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685 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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686 case EVR_PixelData: // used internally for uncompressed pixeld data |
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687 case EVR_OverlayData: // used internally for overlay data |
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688 return new DicomValue; |
0 | 689 |
690 | |
302
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691 /** |
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692 * Default case. |
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693 **/ |
0 | 694 |
302
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695 default: |
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696 return new DicomValue; |
0 | 697 } |
698 } | |
2499
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699 catch (boost::bad_lexical_cast&) |
0 | 700 { |
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701 return new DicomValue; |
0 | 702 } |
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703 catch (std::bad_cast&) |
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704 { |
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705 return new DicomValue; |
306
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706 } |
0 | 707 } |
708 | |
709 | |
1687 | 710 static Json::Value& PrepareNode(Json::Value& parent, |
711 DcmElement& element, | |
712 DicomToJsonFormat format) | |
0 | 713 { |
1687 | 714 assert(parent.type() == Json::objectValue); |
0 | 715 |
35
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716 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
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717 const std::string formattedTag = tag.Format(); |
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718 |
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719 if (format == DicomToJsonFormat_Short) |
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720 { |
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721 parent[formattedTag] = Json::nullValue; |
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722 return parent[formattedTag]; |
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723 } |
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724 |
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725 // This code gives access to the name of the private tags |
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726 std::string tagName = FromDcmtkBridge::GetTagName(element); |
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727 |
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728 switch (format) |
0 | 729 { |
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730 case DicomToJsonFormat_Human: |
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731 parent[tagName] = Json::nullValue; |
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732 return parent[tagName]; |
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733 |
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734 case DicomToJsonFormat_Full: |
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735 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
736 parent[formattedTag] = Json::objectValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
737 Json::Value& node = parent[formattedTag]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
738 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
739 if (element.isLeaf()) |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
740 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
741 node["Name"] = tagName; |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
742 |
2076 | 743 if (element.getTag().getPrivateCreator() != NULL) |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
744 { |
2076 | 745 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
746 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
747 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
748 return node; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
749 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
750 else |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
751 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
752 node["Name"] = tagName; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
753 node["Type"] = "Sequence"; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
754 node["Value"] = Json::nullValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
755 return node["Value"]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
756 } |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
757 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
758 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
759 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
760 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 761 } |
762 } | |
763 | |
764 | |
765 static void LeafValueToJson(Json::Value& target, | |
766 const DicomValue& value, | |
767 DicomToJsonFormat format, | |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
768 DicomToJsonFlags flags, |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
769 unsigned int maxStringLength) |
1687 | 770 { |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
771 Json::Value* targetValue = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
772 Json::Value* targetType = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
773 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
774 switch (format) |
1687 | 775 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
776 case DicomToJsonFormat_Short: |
1860
c7d70f659190
DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1854
diff
changeset
|
777 case DicomToJsonFormat_Human: |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
778 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
779 assert(target.type() == Json::nullValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
780 targetValue = ⌖ |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
781 break; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
782 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
783 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
784 case DicomToJsonFormat_Full: |
0 | 785 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
786 assert(target.type() == Json::objectValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
787 target["Value"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
788 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
789 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
790 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
791 break; |
0 | 792 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
793 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
794 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
795 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 796 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
797 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
798 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
799 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
800 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
801 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
802 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
803 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
804 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
805 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
806 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
807 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
808 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
809 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
810 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
811 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
812 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
813 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
814 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
815 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
816 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
817 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
818 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
819 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
820 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
821 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
822 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
823 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
824 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
825 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
826 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
827 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
828 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
829 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
830 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
831 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
832 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
833 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
834 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
835 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
836 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
837 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
838 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
839 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
840 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
841 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
842 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
843 } |
1687 | 844 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
845 |
1687 | 846 |
2126 | 847 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
848 DcmElement& element, | |
849 DicomToJsonFormat format, | |
850 DicomToJsonFlags flags, | |
851 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
852 Encoding encoding, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
853 const std::set<DicomTag>& ignoreTagLength) |
1687 | 854 { |
1691 | 855 if (parent.type() == Json::nullValue) |
856 { | |
857 parent = Json::objectValue; | |
858 } | |
859 | |
860 assert(parent.type() == Json::objectValue); | |
1687 | 861 Json::Value& target = PrepareNode(parent, element, format); |
862 | |
863 if (element.isLeaf()) | |
864 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
865 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
866 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
867 (element, flags, 0, encoding, ignoreTagLength)); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
868 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
869 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
870 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
871 LeafValueToJson(target, *v, format, flags, maxStringLength); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
872 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
873 else |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
874 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
875 LeafValueToJson(target, *v, format, flags, 0); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
876 } |
0 | 877 } |
878 else | |
879 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
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880 assert(target.type() == Json::nullValue); |
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881 target = Json::arrayValue; |
0 | 882 |
883 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
884 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 885 // etc. are not." The following dynamic_cast is thus OK. |
0 | 886 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
887 | |
888 for (unsigned long i = 0; i < sequence.card(); i++) | |
889 { | |
890 DcmItem* child = sequence.getItem(i); | |
1687 | 891 Json::Value& v = target.append(Json::objectValue); |
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892 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, ignoreTagLength); |
1687 | 893 } |
0 | 894 } |
895 } | |
896 | |
897 | |
2126 | 898 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
899 DcmItem& item, | |
900 DicomToJsonFormat format, | |
901 DicomToJsonFlags flags, | |
902 unsigned int maxStringLength, | |
2409
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903 Encoding encoding, |
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904 const std::set<DicomTag>& ignoreTagLength) |
1686 | 905 { |
1688
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906 assert(parent.type() == Json::objectValue); |
1686 | 907 |
908 for (unsigned long i = 0; i < item.card(); i++) | |
909 { | |
910 DcmElement* element = item.getElement(i); | |
1735
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911 if (element == NULL) |
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912 { |
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913 throw OrthancException(ErrorCode_InternalError); |
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914 } |
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915 |
1818
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ParsedDicomFile::CreateFromJson
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916 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
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917 |
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918 /*element->getTag().isPrivate()*/ |
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919 if (tag.IsPrivate() && |
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920 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
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921 { |
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922 continue; |
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923 } |
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924 |
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925 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
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926 { |
1736
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927 DictionaryLocker locker; |
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928 if (locker->findEntry(element->getTag(), NULL) == NULL) |
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929 { |
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930 continue; |
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931 } |
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932 } |
1736
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933 |
1739
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934 DcmEVR evr = element->getTag().getEVR(); |
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935 if (evr == EVR_OB || |
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936 evr == EVR_OF || |
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937 evr == EVR_OW || |
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938 evr == EVR_UN || |
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939 evr == EVR_ox) |
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940 { |
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941 // This is a binary tag |
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942 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
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943 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
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944 { |
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945 continue; |
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946 } |
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947 } |
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948 |
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949 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, |
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950 maxStringLength, encoding, ignoreTagLength); |
1686 | 951 } |
952 } | |
953 | |
954 | |
2126 | 955 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
956 DcmDataset& dataset, | |
957 DicomToJsonFormat format, | |
958 DicomToJsonFlags flags, | |
2131 | 959 unsigned int maxStringLength, |
2409
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960 Encoding defaultEncoding, |
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961 const std::set<DicomTag>& ignoreTagLength) |
0 | 962 { |
2131 | 963 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
2126 | 964 |
1688
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965 target = Json::objectValue; |
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966 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, ignoreTagLength); |
0 | 967 } |
968 | |
969 | |
2126 | 970 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
971 DcmMetaInfo& dataset, | |
972 DicomToJsonFormat format, | |
973 DicomToJsonFlags flags, | |
974 unsigned int maxStringLength) | |
1831
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975 { |
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976 std::set<DicomTag> ignoreTagLength; |
1831
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977 target = Json::objectValue; |
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978 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, ignoreTagLength); |
1831
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979 } |
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980 |
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981 |
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982 |
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983 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 984 { |
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985 { |
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986 // Some patches for important tags because of different DICOM |
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987 // dictionaries between DCMTK versions |
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988 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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989 std::string n = tmp.GetMainTagsName(); |
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990 if (n.size() != 0) |
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991 { |
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992 return n; |
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993 } |
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994 // End of patches |
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995 } |
106 | 996 |
305
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997 #if 0 |
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998 // This version explicitly calls the dictionary |
0 | 999 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1000 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
1001 | |
306
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1002 std::string s(DcmTag_ERROR_TagName); |
0 | 1003 if (entry != NULL) |
1004 { | |
1005 s = std::string(entry->getTagName()); | |
1006 } | |
1007 | |
1008 dcmDataDict.unlock(); | |
1009 return s; | |
305
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1010 #else |
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1011 const char* name = tag.getTagName(); |
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1012 if (name == NULL) |
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1013 { |
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1014 return DcmTag_ERROR_TagName; |
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1015 } |
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1016 else |
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1017 { |
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1018 return std::string(name); |
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1019 } |
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1020 #endif |
0 | 1021 } |
1022 | |
1023 | |
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1024 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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1025 const std::string& privateCreator) |
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1026 { |
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1027 DcmTag tag(t.GetGroup(), t.GetElement()); |
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1028 |
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1029 if (!privateCreator.empty()) |
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1030 { |
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1031 tag.setPrivateCreator(privateCreator.c_str()); |
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1032 } |
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1033 |
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1034 return GetTagNameInternal(tag); |
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1035 } |
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1036 |
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1037 |
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1038 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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1039 { |
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1040 // Copy the tag to ensure const-correctness of DcmElement. Note |
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1041 // that the private creator information is also copied. |
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1042 DcmTag tag(element.getTag()); |
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1043 |
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1044 return GetTagNameInternal(tag); |
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1045 } |
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1046 |
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1047 |
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1048 |
304 | 1049 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 1050 { |
2662
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1051 DicomTag parsed(0, 0); |
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1052 if (DicomTag::ParseHexadecimal(parsed, name)) |
304 | 1053 { |
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1054 return parsed; |
1861
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1055 } |
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1056 |
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1057 #if 0 |
0 | 1058 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1059 const DcmDictEntry* entry = dict.findEntry(name); | |
1060 | |
1061 if (entry == NULL) | |
1062 { | |
1063 dcmDataDict.unlock(); | |
1582
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1064 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1065 } |
1066 else | |
1067 { | |
1068 DcmTagKey key = entry->getKey(); | |
1069 DicomTag tag(key.getGroup(), key.getElement()); | |
1070 dcmDataDict.unlock(); | |
1071 return tag; | |
1072 } | |
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1073 #else |
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1074 DcmTag tag; |
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1075 if (DcmTag::findTagFromName(name, tag).good()) |
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1076 { |
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1077 return DicomTag(tag.getGTag(), tag.getETag()); |
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1078 } |
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1079 else |
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1080 { |
2470 | 1081 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\""; |
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1082 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1083 } |
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1084 #endif |
0 | 1085 } |
1086 | |
1087 | |
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1088 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1089 { |
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1090 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1091 return tmp.isUnknownVR(); |
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1092 } |
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1093 |
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1094 |
0 | 1095 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1096 const DicomMap& values, |
1097 bool simplify) | |
0 | 1098 { |
1099 if (result.type() != Json::objectValue) | |
1100 { | |
62 | 1101 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1102 } |
1103 | |
1104 result.clear(); | |
1105 | |
1106 for (DicomMap::Map::const_iterator | |
656 | 1107 it = values.map_.begin(); it != values.map_.end(); ++it) |
0 | 1108 { |
2115
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1109 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1110 const std::string tagName = GetTagName(it->first, ""); |
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1111 |
1368 | 1112 if (simplify) |
1113 { | |
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1114 if (it->second->IsNull()) |
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1115 { |
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1116 result[tagName] = Json::nullValue; |
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1117 } |
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1118 else |
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1119 { |
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1120 // TODO IsBinary |
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1121 result[tagName] = it->second->GetContent(); |
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1122 } |
1368 | 1123 } |
1124 else | |
1125 { | |
1126 Json::Value value = Json::objectValue; | |
1127 | |
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1128 value["Name"] = tagName; |
1368 | 1129 |
1130 if (it->second->IsNull()) | |
1131 { | |
1132 value["Type"] = "Null"; | |
1133 value["Value"] = Json::nullValue; | |
1134 } | |
1135 else | |
1136 { | |
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1137 // TODO IsBinary |
1368 | 1138 value["Type"] = "String"; |
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1139 value["Value"] = it->second->GetContent(); |
1368 | 1140 } |
1141 | |
1142 result[it->first.Format()] = value; | |
1143 } | |
0 | 1144 } |
1145 } | |
176 | 1146 |
1147 | |
788 | 1148 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1149 { |
1150 char uid[100]; | |
1151 | |
1152 switch (level) | |
1153 { | |
788 | 1154 case ResourceType_Patient: |
311 | 1155 // The "PatientID" field is of type LO (Long String), 64 |
1156 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1157 // as a random PatientID. | |
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1158 return Toolbox::GenerateUuid(); |
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1159 |
788 | 1160 case ResourceType_Instance: |
302
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1161 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1162 |
788 | 1163 case ResourceType_Series: |
302
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1164 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1165 |
788 | 1166 case ResourceType_Study: |
302
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1167 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1168 |
302
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1169 default: |
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1170 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1171 } |
1172 } | |
1173 | |
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1174 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
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1175 DcmDataset& dataSet) |
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1176 { |
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1177 // Determine the transfer syntax which shall be used to write the |
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1178 // information to the file. We always switch to the Little Endian |
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1179 // syntax, with explicit length. |
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1180 |
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1181 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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1182 |
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1183 |
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1184 /** |
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1185 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1186 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1187 * dataset into memory. We now keep the original transfer syntax |
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1188 * (if available). |
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1189 **/ |
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1190 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
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1191 if (xfer == EXS_Unknown) |
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1192 { |
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1193 // No information about the original transfer syntax: This is |
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1194 // most probably a DICOM dataset that was read from memory. |
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1195 xfer = EXS_LittleEndianExplicit; |
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1196 } |
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1197 |
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1198 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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1199 |
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1200 // Create the meta-header information |
1004
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1201 DcmFileFormat ff(&dataSet); |
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1202 ff.validateMetaInfo(xfer); |
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1203 ff.removeInvalidGroups(); |
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1204 |
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1205 // Create a memory buffer with the proper size |
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1206 { |
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1207 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*) |
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1208 buffer.resize(estimatedSize); |
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1209 } |
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1210 |
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1211 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
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1212 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1213 // Fill the memory buffer with the meta-header and the dataset |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1214 ff.transferInit(); |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1215 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1216 /*opt_groupLength*/ EGL_recalcGL, |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1217 /*opt_paddingType*/ EPD_withoutPadding); |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1218 ff.transferEnd(); |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1219 |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1220 if (c.good()) |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1221 { |
1876
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1222 // The DICOM file is successfully written, truncate the target |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1223 // buffer if its size was overestimated by (*) |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1224 ob.flush(); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1225 |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1226 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1227 if (effectiveSize < buffer.size()) |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1228 { |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1229 buffer.resize(effectiveSize); |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1230 } |
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1231 |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1232 return true; |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1233 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1234 else |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1235 { |
1876
9b458e4484a1
truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1861
diff
changeset
|
1236 // Error |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1237 buffer.clear(); |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1238 return false; |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1239 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1240 } |
1360 | 1241 |
1242 | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1243 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1244 { |
1245 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1246 return Convert(t.getEVR()); |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1247 } |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1248 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1249 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1250 { |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1251 switch (vr) |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1252 { |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1253 case EVR_AE: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1254 return ValueRepresentation_ApplicationEntity; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1255 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1256 case EVR_AS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1257 return ValueRepresentation_AgeString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1258 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1259 case EVR_AT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1260 return ValueRepresentation_AttributeTag; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1261 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1262 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1263 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1264 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1265 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1266 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1267 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1268 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1269 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1270 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1271 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1272 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1273 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1274 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1275 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1276 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1277 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1278 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1279 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1280 case EVR_IS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1281 return ValueRepresentation_IntegerString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1282 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1283 case EVR_LO: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1284 return ValueRepresentation_LongString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1285 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1286 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1287 return ValueRepresentation_LongText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1288 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1289 case EVR_OB: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1290 return ValueRepresentation_OtherByte; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1291 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1292 #if DCMTK_VERSION_NUMBER >= 362 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1293 case EVR_OD: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1294 return ValueRepresentation_OtherDouble; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1295 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1296 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1297 case EVR_OF: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1298 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1299 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1300 #if DCMTK_VERSION_NUMBER >= 362 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1301 case EVR_OL: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1302 return ValueRepresentation_OtherLong; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1303 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1304 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1305 case EVR_OW: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1306 return ValueRepresentation_OtherWord; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1307 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1308 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1309 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1310 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1311 case EVR_SH: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1312 return ValueRepresentation_ShortString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1313 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1314 case EVR_SL: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1315 return ValueRepresentation_SignedLong; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1316 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1317 case EVR_SQ: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1318 return ValueRepresentation_Sequence; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1319 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1320 case EVR_SS: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1321 return ValueRepresentation_SignedShort; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1322 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1323 case EVR_ST: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1324 return ValueRepresentation_ShortText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1325 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1326 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1327 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1328 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1329 #if DCMTK_VERSION_NUMBER >= 362 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1330 case EVR_UC: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1331 return ValueRepresentation_UnlimitedCharacters; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1332 #endif |
2006
6301bbcbcaed
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parents:
1998
diff
changeset
|
1333 |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1334 case EVR_UI: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1335 return ValueRepresentation_UniqueIdentifier; |
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1336 |
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1337 case EVR_UL: |
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1338 return ValueRepresentation_UnsignedLong; |
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1339 |
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1340 case EVR_UN: |
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1341 return ValueRepresentation_Unknown; |
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1342 |
3198
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1343 #if DCMTK_VERSION_NUMBER >= 362 |
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1344 case EVR_UR: |
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1345 return ValueRepresentation_UniversalResource; |
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1346 #endif |
2006
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1347 |
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1348 case EVR_US: |
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1349 return ValueRepresentation_UnsignedShort; |
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1350 |
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1351 case EVR_UT: |
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1352 return ValueRepresentation_UnlimitedText; |
1792 | 1353 |
1417
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1354 default: |
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1355 return ValueRepresentation_NotSupported; |
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1356 } |
1360 | 1357 } |
1358 | |
1689 | 1359 |
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1360 static bool IsBinaryTag(const DcmTag& key) |
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1361 { |
1818
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ParsedDicomFile::CreateFromJson
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1362 return (key.isUnknownVR() || |
1739
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1363 key.getEVR() == EVR_OB || |
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1364 key.getEVR() == EVR_OF || |
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1365 key.getEVR() == EVR_OW || |
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1366 key.getEVR() == EVR_UN || |
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1367 key.getEVR() == EVR_ox); |
1693
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1368 } |
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1369 |
1689 | 1370 |
1371 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag) | |
1372 { | |
1373 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1374 | |
1818
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1375 if (tag.IsPrivate() || |
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|
1376 IsBinaryTag(key)) |
1693
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|
1377 { |
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|
1378 return new DcmOtherByteOtherWord(key); |
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1379 } |
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1380 |
1689 | 1381 switch (key.getEVR()) |
1382 { | |
1383 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1384 | |
1385 /** | |
1739
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|
1386 * Binary types, handled above |
1689 | 1387 **/ |
1388 | |
1389 case EVR_OB: // other byte | |
1390 case EVR_OF: // other float | |
1391 case EVR_OW: // other word | |
1392 case EVR_UN: // unknown value representation | |
1739
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|
1393 case EVR_ox: // OB or OW depending on context |
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|
1394 throw OrthancException(ErrorCode_InternalError); |
1689 | 1395 |
1396 | |
1397 /** | |
1398 * String types. | |
1399 * http://support.dcmtk.org/docs/classDcmByteString.html | |
1400 **/ | |
1401 | |
1402 case EVR_AS: // age string | |
1403 return new DcmAgeString(key); | |
1404 | |
1405 case EVR_AE: // application entity title | |
1406 return new DcmApplicationEntity(key); | |
1407 | |
1408 case EVR_CS: // code string | |
1409 return new DcmCodeString(key); | |
1410 | |
1411 case EVR_DA: // date string | |
1412 return new DcmDate(key); | |
1413 | |
1414 case EVR_DT: // date time string | |
1415 return new DcmDateTime(key); | |
1416 | |
1417 case EVR_DS: // decimal string | |
1418 return new DcmDecimalString(key); | |
1419 | |
1420 case EVR_IS: // integer string | |
1421 return new DcmIntegerString(key); | |
1422 | |
1423 case EVR_TM: // time string | |
1424 return new DcmTime(key); | |
1425 | |
1426 case EVR_UI: // unique identifier | |
1427 return new DcmUniqueIdentifier(key); | |
1428 | |
1429 case EVR_ST: // short text | |
1430 return new DcmShortText(key); | |
1431 | |
1432 case EVR_LO: // long string | |
1433 return new DcmLongString(key); | |
1434 | |
1435 case EVR_LT: // long text | |
1436 return new DcmLongText(key); | |
1437 | |
1438 case EVR_UT: // unlimited text | |
1439 return new DcmUnlimitedText(key); | |
1440 | |
1441 case EVR_SH: // short string | |
1442 return new DcmShortString(key); | |
1443 | |
1444 case EVR_PN: // person name | |
1445 return new DcmPersonName(key); | |
1446 | |
1447 | |
1448 /** | |
1449 * Numerical types | |
1450 **/ | |
1451 | |
1452 case EVR_SL: // signed long | |
1453 return new DcmSignedLong(key); | |
1454 | |
1455 case EVR_SS: // signed short | |
1456 return new DcmSignedShort(key); | |
1457 | |
1458 case EVR_UL: // unsigned long | |
1459 return new DcmUnsignedLong(key); | |
1460 | |
1461 case EVR_US: // unsigned short | |
1462 return new DcmUnsignedShort(key); | |
1463 | |
1464 case EVR_FL: // float single-precision | |
1465 return new DcmFloatingPointSingle(key); | |
1466 | |
1467 case EVR_FD: // float double-precision | |
1468 return new DcmFloatingPointDouble(key); | |
1469 | |
1470 | |
1471 /** | |
1472 * Sequence types, should never occur at this point. | |
1473 **/ | |
1474 | |
1475 case EVR_SQ: // sequence of items | |
1476 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1477 | |
1478 | |
1479 /** | |
1739
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1480 * TODO |
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1481 **/ |
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1482 |
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1483 case EVR_AT: // attribute tag |
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|
1484 throw OrthancException(ErrorCode_NotImplemented); |
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1485 |
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1486 |
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|
1487 /** |
1689 | 1488 * Internal to DCMTK. |
1489 **/ | |
1490 | |
1491 case EVR_xs: // SS or US depending on context | |
1492 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1493 case EVR_na: // na="not applicable", for data which has no VR | |
1494 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1495 case EVR_item: // used internally for items | |
1496 case EVR_metainfo: // used internally for meta info datasets | |
1497 case EVR_dataset: // used internally for datasets | |
1498 case EVR_fileFormat: // used internally for DICOM files | |
1499 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1500 case EVR_dirRecord: // used internally for DICOMDIR records | |
1501 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1502 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1503 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1504 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1505 case EVR_OverlayData: // used internally for overlay data | |
1506 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1507 default: | |
1508 break; | |
1509 } | |
1510 | |
1511 throw OrthancException(ErrorCode_InternalError); | |
1512 } | |
1513 | |
1514 | |
1515 | |
1516 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1517 const DicomTag& tag, | |
1695 | 1518 const std::string& utf8Value, |
1818
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1519 bool decodeDataUriScheme, |
1695 | 1520 Encoding dicomEncoding) |
1689 | 1521 { |
1522 std::string binary; | |
1695 | 1523 const std::string* decoded = &utf8Value; |
1689 | 1524 |
1818
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|
1525 if (decodeDataUriScheme && |
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diff
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|
1526 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
1689 | 1527 { |
1528 std::string mime; | |
1981
4b545a8b1f95
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diff
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1529 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
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1530 { |
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diff
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|
1531 throw OrthancException(ErrorCode_BadFileFormat); |
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1532 } |
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diff
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|
1533 |
1695 | 1534 decoded = &binary; |
1535 } | |
1536 else if (dicomEncoding != Encoding_Utf8) | |
1537 { | |
1538 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1539 decoded = &binary; |
1540 } | |
1541 | |
1693
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1542 DcmTag key(tag.GetGroup(), tag.GetElement()); |
1689 | 1543 |
1818
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|
1544 if (tag.IsPrivate() || |
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|
1545 IsBinaryTag(key)) |
1689 | 1546 { |
1547 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good()) | |
1548 { | |
1549 return; | |
1550 } | |
1551 else | |
1552 { | |
1553 throw OrthancException(ErrorCode_InternalError); | |
1554 } | |
1555 } | |
1556 | |
1557 bool ok = false; | |
1558 | |
1559 try | |
1560 { | |
1561 switch (key.getEVR()) | |
1562 { | |
1563 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1564 | |
1565 /** | |
1566 * TODO. | |
1567 **/ | |
1568 | |
1569 case EVR_OB: // other byte | |
1570 case EVR_OF: // other float | |
1571 case EVR_OW: // other word | |
1572 case EVR_AT: // attribute tag | |
1573 throw OrthancException(ErrorCode_NotImplemented); | |
1574 | |
1575 case EVR_UN: // unknown value representation | |
1576 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1577 | |
1578 | |
1579 /** | |
1580 * String types. | |
1581 **/ | |
1582 | |
1583 case EVR_DS: // decimal string | |
1584 case EVR_IS: // integer string | |
1585 case EVR_AS: // age string | |
1586 case EVR_DA: // date string | |
1587 case EVR_DT: // date time string | |
1588 case EVR_TM: // time string | |
1589 case EVR_AE: // application entity title | |
1590 case EVR_CS: // code string | |
1591 case EVR_SH: // short string | |
1592 case EVR_LO: // long string | |
1593 case EVR_ST: // short text | |
1594 case EVR_LT: // long text | |
1595 case EVR_UT: // unlimited text | |
1596 case EVR_PN: // person name | |
1597 case EVR_UI: // unique identifier | |
1598 { | |
1599 ok = element.putString(decoded->c_str()).good(); | |
1600 break; | |
1601 } | |
1602 | |
1603 | |
1604 /** | |
1605 * Numerical types | |
1606 **/ | |
1607 | |
1608 case EVR_SL: // signed long | |
1609 { | |
1610 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1611 break; | |
1612 } | |
1613 | |
1614 case EVR_SS: // signed short | |
1615 { | |
1616 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1617 break; | |
1618 } | |
1619 | |
1620 case EVR_UL: // unsigned long | |
1621 { | |
1622 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1623 break; | |
1624 } | |
1625 | |
1626 case EVR_US: // unsigned short | |
1627 { | |
1628 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1629 break; | |
1630 } | |
1631 | |
1632 case EVR_FL: // float single-precision | |
1633 { | |
1634 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1635 break; | |
1636 } | |
1637 | |
1638 case EVR_FD: // float double-precision | |
1639 { | |
1640 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1641 break; | |
1642 } | |
1643 | |
1644 | |
1645 /** | |
1646 * Sequence types, should never occur at this point. | |
1647 **/ | |
1648 | |
1649 case EVR_SQ: // sequence of items | |
1650 { | |
1651 ok = false; | |
1652 break; | |
1653 } | |
1654 | |
1655 | |
1656 /** | |
1657 * Internal to DCMTK. | |
1658 **/ | |
1659 | |
1660 case EVR_ox: // OB or OW depending on context | |
1661 case EVR_xs: // SS or US depending on context | |
1662 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1663 case EVR_na: // na="not applicable", for data which has no VR | |
1664 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1665 case EVR_item: // used internally for items | |
1666 case EVR_metainfo: // used internally for meta info datasets | |
1667 case EVR_dataset: // used internally for datasets | |
1668 case EVR_fileFormat: // used internally for DICOM files | |
1669 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1670 case EVR_dirRecord: // used internally for DICOMDIR records | |
1671 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1672 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1673 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1674 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1675 case EVR_OverlayData: // used internally for overlay data | |
1676 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1677 default: | |
1678 break; | |
1679 } | |
1680 } | |
1681 catch (boost::bad_lexical_cast&) | |
1682 { | |
1683 ok = false; | |
1684 } | |
1685 | |
1686 if (!ok) | |
1687 { | |
2954
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1688 throw OrthancException(ErrorCode_BadFileFormat, |
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1689 "While creating a DICOM instance, tag (" + tag.Format() + |
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1690 ") has out-of-range value: \"" + (*decoded) + "\""); |
1689 | 1691 } |
1692 } | |
1693 | |
1694 | |
1693
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1695 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
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1696 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1697 bool decodeDataUriScheme, |
1695 | 1698 Encoding dicomEncoding) |
1689 | 1699 { |
1700 std::auto_ptr<DcmElement> element; | |
1701 | |
1690 | 1702 switch (value.type()) |
1689 | 1703 { |
1690 | 1704 case Json::stringValue: |
1705 element.reset(CreateElementForTag(tag)); | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1706 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1707 break; |
1708 | |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1709 case Json::nullValue: |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1710 element.reset(CreateElementForTag(tag)); |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1711 FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding); |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1712 break; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1713 |
1690 | 1714 case Json::arrayValue: |
1715 { | |
1716 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1717 if (key.getEVR() != EVR_SQ) | |
1718 { | |
1719 throw OrthancException(ErrorCode_BadParameterType); | |
1720 } | |
1721 | |
2287
9f3414878c02
Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2275
diff
changeset
|
1722 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key); |
1690 | 1723 element.reset(sequence); |
1724 | |
1725 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1726 { | |
1727 std::auto_ptr<DcmItem> item(new DcmItem); | |
1728 | |
2830 | 1729 switch (value[i].type()) |
1690 | 1730 { |
2830 | 1731 case Json::objectValue: |
1732 { | |
1733 Json::Value::Members members = value[i].getMemberNames(); | |
1734 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1735 { | |
1736 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding)); | |
1737 } | |
2831 | 1738 break; |
2830 | 1739 } |
1740 | |
1741 case Json::arrayValue: | |
2831 | 1742 { |
2830 | 1743 // Lua cannot disambiguate between an empty dictionary |
1744 // and an empty array | |
1745 if (value[i].size() != 0) | |
1746 { | |
1747 throw OrthancException(ErrorCode_BadParameterType); | |
1748 } | |
1749 break; | |
2831 | 1750 } |
2830 | 1751 |
1752 default: | |
1753 throw OrthancException(ErrorCode_BadParameterType); | |
1690 | 1754 } |
1755 | |
1756 sequence->append(item.release()); | |
1757 } | |
1758 | |
1759 break; | |
1760 } | |
1761 | |
1762 default: | |
1763 throw OrthancException(ErrorCode_BadParameterType); | |
1689 | 1764 } |
1765 | |
1766 return element.release(); | |
1767 } | |
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1768 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1769 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1770 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1771 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1772 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1773 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1774 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1775 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1776 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1777 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1778 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1779 DcmPixelSequence* pixelSequence = NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1780 if (!pixelData.getEncapsulatedRepresentation |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1781 (dataset.getOriginalXfer(), NULL, pixelSequence).good()) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1782 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1783 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1784 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1785 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1786 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1787 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1788 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1789 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1790 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1791 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1792 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1793 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1794 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1795 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1796 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1797 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1798 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1799 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1800 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1801 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1802 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1803 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1804 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1805 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1806 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1807 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1808 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1812 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1813 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1815 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1816 "Unknown encoding while creating DICOM from JSON: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1817 value.toStyledString()); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1818 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1819 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1820 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1821 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1822 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1823 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1824 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1825 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1826 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1827 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1828 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1829 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 bool decodeDataUriScheme, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 std::auto_ptr<DcmDataset> result(new DcmDataset); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1848 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1849 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1850 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1851 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1852 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1853 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1854 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1855 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1856 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1857 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1858 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1859 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1860 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1861 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1862 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1863 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1864 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1865 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1866 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1867 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1868 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1869 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1870 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1871 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1872 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1873 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1874 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1875 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1876 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1877 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1878 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1879 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1880 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1881 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1882 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1883 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1884 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1885 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1886 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1887 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1888 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1889 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1890 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1891 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1892 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1893 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1894 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1895 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1896 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1897 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1898 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1899 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1900 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1901 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1902 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1903 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1904 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1905 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1906 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1907 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1908 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1909 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1910 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1911 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1912 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1913 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1914 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1915 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1916 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1917 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1918 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1919 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1920 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1921 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1922 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1923 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1924 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1925 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1926 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1927 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1928 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1929 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1930 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1931 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1932 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1933 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1934 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1935 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1936 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1937 result->transferInit(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1938 if (!result->read(is).good()) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1939 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1940 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1941 "Cannot parse an invalid DICOM file (size: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1942 boost::lexical_cast<std::string>(size) + " bytes)"); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1943 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1944 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1945 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1946 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1947 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1948 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1949 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1950 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1951 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1952 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1953 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1954 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1955 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1956 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1957 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1958 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1959 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1960 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1961 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1962 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1963 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1964 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1965 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1966 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1967 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1968 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1969 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1970 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1971 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1972 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1973 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1974 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1975 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2172
diff
changeset
|
1976 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1977 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2172
diff
changeset
|
1978 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1979 Encoding source, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1980 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1981 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1982 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1983 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1984 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1985 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1986 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1987 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1988 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1989 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1990 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1991 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1992 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1993 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1994 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1995 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1996 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1997 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1998 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1999 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2000 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2001 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2002 std::string a = Toolbox::ConvertToUtf8(c, source); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2003 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2004 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2005 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2006 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2007 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2008 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2009 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2010 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2011 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2012 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2013 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2014 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2015 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2016 ChangeStringEncoding(*sequence.getItem(j), source, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2017 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2018 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2019 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2020 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2021 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2022 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2023 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2024 bool FromDcmtkBridge::LookupTransferSyntax(std::string& result, |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2025 DcmFileFormat& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2026 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2027 const char* value = NULL; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2028 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2029 if (dicom.getMetaInfo() != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2030 dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2031 value != NULL) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2032 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2033 result.assign(value); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2034 return true; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2035 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2036 else |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2037 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2038 return false; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2039 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2040 } |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2041 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2042 |
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
2043 #if ORTHANC_ENABLE_LUA == 1 |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2044 void FromDcmtkBridge::ExecuteToDicom(DicomMap& target, |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2045 LuaFunctionCall& call) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2046 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2047 Json::Value output; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2048 call.ExecuteToJson(output, true /* keep strings */); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2049 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2050 target.Clear(); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2051 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2052 if (output.type() == Json::arrayValue && |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2053 output.size() == 0) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2054 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2055 // This case happens for empty tables |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2056 return; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2057 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2058 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2059 if (output.type() != Json::objectValue) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2060 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2061 throw OrthancException(ErrorCode_LuaBadOutput, |
3156 | 2062 "Lua: The script must return a table"); |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2063 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2064 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2065 Json::Value::Members members = output.getMemberNames(); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2066 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2067 for (size_t i = 0; i < members.size(); i++) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2068 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2069 if (output[members[i]].type() != Json::stringValue) |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2070 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2071 throw OrthancException(ErrorCode_LuaBadOutput, |
3156 | 2072 "Lua: The script must return a table " |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2073 "mapping names of DICOM tags to strings"); |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2074 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2075 |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
diff
changeset
|
2076 DicomTag tag(ParseTag(members[i])); |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2216
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2077 target.SetValue(tag, output[members[i]].asString(), false); |
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dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
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2078 } |
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2079 } |
2232
3dd44baebc36
macro ORTHANC_ENABLE_LUA for orthanc-wsi
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2080 #endif |
2381
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2081 |
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2082 |
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2083 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
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2084 DcmItem& dataset) |
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2085 { |
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2086 ExtractDicomSummary(target, dataset, |
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2087 ORTHANC_MAXIMUM_TAG_LENGTH, |
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2088 GetDefaultDicomEncoding()); |
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2089 } |
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2090 |
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2091 |
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2092 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
2409
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2093 DcmDataset& dataset, |
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2094 const std::set<DicomTag>& ignoreTagLength) |
2381
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2095 { |
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2096 ExtractDicomAsJson(target, dataset, |
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2097 DicomToJsonFormat_Full, |
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2098 DicomToJsonFlags_Default, |
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2099 ORTHANC_MAXIMUM_TAG_LENGTH, |
2409
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2100 GetDefaultDicomEncoding(), |
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2101 ignoreTagLength); |
2381
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2102 } |
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2103 |
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2104 |
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2105 void FromDcmtkBridge::InitializeCodecs() |
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2106 { |
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2107 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
2528
832217e4e872
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2522
diff
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|
2108 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK"; |
2381
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2109 DJLSDecoderRegistration::registerCodecs(); |
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2110 #endif |
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2111 |
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2112 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
2528
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|
2113 LOG(INFO) << "Registering JPEG codecs in DCMTK"; |
2381
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2114 DJDecoderRegistration::registerCodecs(); |
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2115 #endif |
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2116 } |
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|
2117 |
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|
2118 |
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2119 void FromDcmtkBridge::FinalizeCodecs() |
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|
2120 { |
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2121 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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2122 // Unregister JPEG-LS codecs |
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2123 DJLSDecoderRegistration::cleanup(); |
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2124 #endif |
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2125 |
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2126 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2127 // Unregister JPEG codecs |
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2128 DJDecoderRegistration::cleanup(); |
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2129 #endif |
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2130 } |
2499
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2131 |
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|
2132 |
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|
2133 |
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2134 // Forward declaration |
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2135 static void ApplyVisitorToElement(DcmElement& element, |
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2136 ITagVisitor& visitor, |
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2137 const std::vector<DicomTag>& parentTags, |
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2138 const std::vector<size_t>& parentIndexes, |
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|
2139 Encoding encoding); |
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|
2140 |
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|
2141 static void ApplyVisitorToDataset(DcmItem& dataset, |
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|
2142 ITagVisitor& visitor, |
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|
2143 const std::vector<DicomTag>& parentTags, |
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|
2144 const std::vector<size_t>& parentIndexes, |
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|
2145 Encoding encoding) |
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|
2146 { |
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|
2147 assert(parentTags.size() == parentIndexes.size()); |
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|
2148 |
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|
2149 for (unsigned long i = 0; i < dataset.card(); i++) |
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2150 { |
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|
2151 DcmElement* element = dataset.getElement(i); |
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2152 if (element == NULL) |
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|
2153 { |
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|
2154 throw OrthancException(ErrorCode_InternalError); |
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2155 } |
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2156 else |
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2157 { |
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|
2158 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding); |
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2159 } |
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2160 } |
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2161 } |
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2162 |
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2163 |
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2164 static void ApplyVisitorToLeaf(DcmElement& element, |
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2165 ITagVisitor& visitor, |
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2166 const std::vector<DicomTag>& parentTags, |
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2167 const std::vector<size_t>& parentIndexes, |
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2168 const DicomTag& tag, |
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2169 Encoding encoding) |
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2170 { |
3198
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2171 // TODO - Merge this function, that is more recent, with ConvertLeafElement() |
2499
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2172 |
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2173 assert(element.isLeaf()); |
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2174 |
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2175 DcmEVR evr = element.getTag().getEVR(); |
3198
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2176 |
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2177 |
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2178 /** |
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2179 * Fix the EVR for types internal to DCMTK |
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2180 **/ |
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2181 |
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2182 if (evr == EVR_ox) // OB or OW depending on context |
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2183 { |
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2184 evr = EVR_OB; |
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2185 } |
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2186 |
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2187 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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2188 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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|
2189 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2190 evr = EVR_UN; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2191 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2192 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2193 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2194 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2195 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2196 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2197 * Deal with binary data (including PixelData). |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2198 **/ |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2199 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2200 if (evr == EVR_OB || // other byte |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2201 evr == EVR_OF || // other float |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2202 #if DCMTK_VERSION_NUMBER >= 362 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2203 evr == EVR_OD || // other double |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2204 evr == EVR_OL || // other long |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2205 #endif |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2206 evr == EVR_OW || // other word |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2207 evr == EVR_UN) // unknown value representation |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2208 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2209 Uint8* data = NULL; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2210 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2211 if (element.getUint8Array(data) == EC_Normal) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2212 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2213 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength()); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2214 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2215 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2216 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2217 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2218 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2219 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2220 return; // We're done |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2221 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2222 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2223 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2224 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2225 * Deal with plain strings (and convert them to UTF-8) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2226 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2227 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2228 char *c = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2229 if (element.isaString() && |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2230 element.getString(c).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2231 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2232 std::string utf8; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2233 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2234 if (c != NULL) // This case corresponds to the empty string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2235 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2236 std::string s(c); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2237 utf8 = Toolbox::ConvertToUtf8(s, encoding); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2238 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2239 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2240 std::string newValue; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2241 ITagVisitor::Action action = visitor.VisitString |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2242 (newValue, parentTags, parentIndexes, tag, vr, utf8); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2243 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2244 switch (action) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2245 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2246 case ITagVisitor::Action_None: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2247 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2248 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2249 case ITagVisitor::Action_Replace: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2250 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2251 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding); |
2522
ce2dfba9417c
fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2513
diff
changeset
|
2252 if (element.putString(s.c_str()) != EC_Normal) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2253 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2254 throw OrthancException(ErrorCode_InternalError, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2255 "Cannot replace value of tag: " + tag.Format()); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2256 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2257 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2258 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2259 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2260 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2261 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2262 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2263 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2264 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2265 return; // We're done |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2266 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2267 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2268 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2269 try |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2270 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2271 // http://support.dcmtk.org/docs/dcvr_8h-source.html |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2272 switch (evr) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2273 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2274 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2275 /** |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2276 * Plain string values. |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
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diff
changeset
|
2277 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2278 |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2279 case EVR_DS: // decimal string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2280 case EVR_IS: // integer string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2281 case EVR_AS: // age string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2282 case EVR_DA: // date string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2283 case EVR_DT: // date time string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2284 case EVR_TM: // time string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2285 case EVR_AE: // application entity title |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2286 case EVR_CS: // code string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2287 case EVR_SH: // short string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2288 case EVR_LO: // long string |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2289 case EVR_ST: // short text |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2290 case EVR_LT: // long text |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2291 case EVR_UT: // unlimited text |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2292 case EVR_PN: // person name |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2293 case EVR_UI: // unique identifier |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2294 { |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2295 Uint8* data = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2296 |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2297 if (element.getUint8Array(data) == EC_Normal) |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
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diff
changeset
|
2298 { |
3198
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unit testing dicomweb conversion
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parents:
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diff
changeset
|
2299 const Uint32 length = element.getLength(); |
7724ed267b5c
unit testing dicomweb conversion
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parents:
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diff
changeset
|
2300 Uint32 l = 0; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2301 while (l < length && |
7724ed267b5c
unit testing dicomweb conversion
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parents:
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diff
changeset
|
2302 data[l] != 0) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2303 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2304 l++; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2305 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2306 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2307 if (l == length) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2308 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2309 // Not a null-terminated plain string |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2310 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2311 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2312 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2313 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2314 std::string ignored; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2315 std::string s(reinterpret_cast<const char*>(data), l); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2316 ITagVisitor::Action action = visitor.VisitString |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2317 (ignored, parentTags, parentIndexes, tag, vr, |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2318 Toolbox::ConvertToUtf8(s, encoding)); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2319 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2320 if (action != ITagVisitor::Action_None) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2321 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2322 LOG(WARNING) << "Cannot replace this string tag: " |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2323 << FromDcmtkBridge::GetTagName(element) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2324 << " (" << tag.Format() << ")"; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2325 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2326 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2327 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2328 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2329 { |
3195 | 2330 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2331 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2332 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2333 return; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2334 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2335 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2336 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2337 * Numeric types |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2338 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2339 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2340 case EVR_SL: // signed long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2341 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2342 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2343 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2344 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2345 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2346 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2347 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2348 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2349 Sint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2350 if (content.getSint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2351 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2352 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2353 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2354 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2355 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2356 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2357 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2358 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2359 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2360 case EVR_SS: // signed short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2361 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2362 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2363 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2364 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2365 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2366 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2367 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2368 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2369 Sint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2370 if (content.getSint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2371 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2372 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2373 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2374 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2375 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2376 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2377 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2378 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2379 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2380 case EVR_UL: // unsigned long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2381 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2382 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2383 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2384 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2385 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2386 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2387 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2388 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2389 Uint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2390 if (content.getUint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2391 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2392 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2393 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2394 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2395 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2396 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2397 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2398 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2399 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2400 case EVR_US: // unsigned short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2401 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2402 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2403 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2404 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2405 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2406 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2407 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2408 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2409 Uint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2410 if (content.getUint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2411 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2412 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2413 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2414 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2415 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2416 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2417 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2418 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2419 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2420 case EVR_FL: // float single-precision |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2421 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2422 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2423 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2424 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2425 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2426 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2427 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2428 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2429 Float32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2430 if (content.getFloat32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2431 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2432 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2433 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2434 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2435 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2436 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2437 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2438 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2439 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2440 case EVR_FD: // float double-precision |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2441 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2442 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2443 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2444 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2445 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2446 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2447 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2448 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2449 Float64 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2450 if (content.getFloat64(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2451 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2452 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2453 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2454 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2455 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2456 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2457 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2458 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2459 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2460 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2461 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2462 * Attribute tag. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2463 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2464 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2465 case EVR_AT: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2466 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2467 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2468 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2469 std::vector<DicomTag> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2470 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2471 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2472 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2473 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2474 DcmTagKey f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2475 if (content.getTagVal(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2476 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2477 DicomTag t(f.getGroup(), f.getElement()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2478 values.push_back(t); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2479 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2480 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2481 |
3195 | 2482 assert(vr == ValueRepresentation_AttributeTag); |
2483 visitor.VisitAttributes(parentTags, parentIndexes, tag, values); | |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2484 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2485 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2486 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2487 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2488 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2489 * Sequence types, should never occur at this point because of |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2490 * "element.isLeaf()". |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2491 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2492 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2493 case EVR_SQ: // sequence of items |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2494 { |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2495 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2496 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2497 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2498 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2499 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2500 * Internal to DCMTK. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2501 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2502 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2503 case EVR_xs: // SS or US depending on context |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2504 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2505 case EVR_na: // na="not applicable", for data which has no VR |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2506 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2507 case EVR_item: // used internally for items |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2508 case EVR_metainfo: // used internally for meta info datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2509 case EVR_dataset: // used internally for datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2510 case EVR_fileFormat: // used internally for DICOM files |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2511 case EVR_dicomDir: // used internally for DICOMDIR objects |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2512 case EVR_dirRecord: // used internally for DICOMDIR records |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2513 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2514 case EVR_pixelItem: // used internally for pixel items in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2515 case EVR_PixelData: // used internally for uncompressed pixeld data |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2516 case EVR_OverlayData: // used internally for overlay data |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2517 { |
3195 | 2518 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2519 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2520 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2521 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2522 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2523 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2524 * Default case. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2525 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2526 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2527 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2528 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2529 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2530 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2531 catch (boost::bad_lexical_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2532 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2533 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2534 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2535 catch (std::bad_cast&) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2536 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2537 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2538 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2539 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2540 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2541 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2542 static void ApplyVisitorToElement(DcmElement& element, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2543 ITagVisitor& visitor, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2544 const std::vector<DicomTag>& parentTags, |
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2545 const std::vector<size_t>& parentIndexes, |
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2546 Encoding encoding) |
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2547 { |
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2548 assert(parentTags.size() == parentIndexes.size()); |
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2549 |
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2550 DicomTag tag(FromDcmtkBridge::Convert(element.getTag())); |
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2551 |
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2552 if (element.isLeaf()) |
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2553 { |
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2554 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding); |
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2555 } |
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2556 else |
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2557 { |
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2558 // "All subclasses of DcmElement except for DcmSequenceOfItems |
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2559 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
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2560 // etc. are not." The following dynamic_cast is thus OK. |
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2561 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
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2562 |
3195 | 2563 if (sequence.card() == 0) |
2564 { | |
2565 visitor.VisitEmptySequence(parentTags, parentIndexes, tag); | |
2566 } | |
2567 else | |
2499
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2568 { |
3195 | 2569 std::vector<DicomTag> tags = parentTags; |
2570 std::vector<size_t> indexes = parentIndexes; | |
2571 tags.push_back(tag); | |
2572 indexes.push_back(0); | |
2573 | |
2574 for (unsigned long i = 0; i < sequence.card(); i++) | |
2575 { | |
2576 indexes.back() = static_cast<size_t>(i); | |
2577 DcmItem* child = sequence.getItem(i); | |
2578 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding); | |
2579 } | |
2499
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2580 } |
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2581 } |
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2582 } |
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2583 |
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2584 |
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2585 void FromDcmtkBridge::Apply(DcmItem& dataset, |
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2586 ITagVisitor& visitor, |
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2587 Encoding defaultEncoding) |
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2588 { |
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2589 std::vector<DicomTag> parentTags; |
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2590 std::vector<size_t> parentIndexes; |
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2591 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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2592 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding); |
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2593 } |
0 | 2594 } |