Mercurial > hg > orthanc
annotate Core/DicomParsing/FromDcmtkBridge.h @ 3009:750de70b3603
make "/tools/create-dicom" more tolerant to invalid specific character set
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 13 Dec 2018 17:19:50 +0100 |
parents | 83b8b6743531 |
children | 4e43e67f8ecf |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
34 #pragma once | |
35 | |
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36 #include "ITagVisitor.h" |
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37 #include "../DicomFormat/DicomElement.h" |
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38 #include "../DicomFormat/DicomMap.h" |
791 | 39 |
0 | 40 #include <dcmtk/dcmdata/dcdatset.h> |
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41 #include <dcmtk/dcmdata/dcmetinf.h> |
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42 #include <dcmtk/dcmdata/dcpixseq.h> |
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43 #include <dcmtk/dcmdata/dcfilefo.h> |
0 | 44 #include <json/json.h> |
45 | |
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46 #if !defined(ORTHANC_ENABLE_LUA) |
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47 # error The macro ORTHANC_ENABLE_LUA must be defined |
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48 #endif |
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49 |
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50 #if ORTHANC_ENABLE_DCMTK != 1 |
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51 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
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52 #endif |
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53 |
2126 | 54 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
55 # include <gtest/gtest_prod.h> | |
56 #endif | |
57 | |
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58 #if ORTHANC_ENABLE_LUA == 1 |
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59 # include "../Lua/LuaFunctionCall.h" |
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60 #endif |
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61 |
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62 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
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63 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
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64 #endif |
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65 |
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66 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
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67 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
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68 #endif |
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69 |
2126 | 70 |
62 | 71 namespace Orthanc |
0 | 72 { |
2125 | 73 class FromDcmtkBridge : public boost::noncopyable |
0 | 74 { |
2126 | 75 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
76 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
77 #endif | |
78 | |
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79 friend class ParsedDicomFile; |
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80 |
2125 | 81 private: |
82 FromDcmtkBridge(); // Pure static class | |
83 | |
84 static void ExtractDicomSummary(DicomMap& target, | |
85 DcmItem& dataset, | |
86 unsigned int maxStringLength, | |
87 Encoding defaultEncoding); | |
88 | |
2126 | 89 static void DatasetToJson(Json::Value& parent, |
90 DcmItem& item, | |
91 DicomToJsonFormat format, | |
92 DicomToJsonFlags flags, | |
93 unsigned int maxStringLength, | |
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94 Encoding encoding, |
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95 const std::set<DicomTag>& ignoreTagLength); |
2126 | 96 |
97 static void ElementToJson(Json::Value& parent, | |
98 DcmElement& element, | |
99 DicomToJsonFormat format, | |
100 DicomToJsonFlags flags, | |
101 unsigned int maxStringLength, | |
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102 Encoding dicomEncoding, |
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103 const std::set<DicomTag>& ignoreTagLength); |
2126 | 104 |
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105 static void ExtractDicomAsJson(Json::Value& target, |
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106 DcmDataset& dataset, |
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107 DicomToJsonFormat format, |
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108 DicomToJsonFlags flags, |
2131 | 109 unsigned int maxStringLength, |
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110 Encoding defaultEncoding, |
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111 const std::set<DicomTag>& ignoreTagLength); |
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112 |
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113 static void ChangeStringEncoding(DcmItem& dataset, |
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114 Encoding source, |
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115 Encoding target); |
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116 |
0 | 117 public: |
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118 static void InitializeDictionary(bool loadPrivateDictionary); |
1656 | 119 |
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120 static void RegisterDictionaryTag(const DicomTag& tag, |
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121 ValueRepresentation vr, |
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122 const std::string& name, |
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123 unsigned int minMultiplicity, |
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124 unsigned int maxMultiplicity, |
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125 const std::string& privateCreator); |
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126 |
1936 | 127 static Encoding DetectEncoding(DcmItem& dataset, |
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128 Encoding defaultEncoding); |
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129 |
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130 static DicomTag Convert(const DcmTag& tag); |
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131 |
0 | 132 static DicomTag GetTag(const DcmElement& element); |
133 | |
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134 static bool IsUnknownTag(const DicomTag& tag); |
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135 |
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136 static DicomValue* ConvertLeafElement(DcmElement& element, |
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137 DicomToJsonFlags flags, |
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138 unsigned int maxStringLength, |
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139 Encoding encoding, |
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140 const std::set<DicomTag>& ignoreTagLength); |
0 | 141 |
2126 | 142 static void ExtractHeaderAsJson(Json::Value& target, |
143 DcmMetaInfo& header, | |
144 DicomToJsonFormat format, | |
145 DicomToJsonFlags flags, | |
146 unsigned int maxStringLength); | |
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147 |
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148 static std::string GetTagName(const DicomTag& tag, |
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149 const std::string& privateCreator); |
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150 |
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151 static std::string GetTagName(const DcmElement& element); |
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152 |
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153 static std::string GetTagName(const DicomElement& element) |
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154 { |
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155 return GetTagName(element.GetTag(), ""); |
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156 } |
0 | 157 |
304 | 158 static DicomTag ParseTag(const char* name); |
0 | 159 |
304 | 160 static DicomTag ParseTag(const std::string& name) |
0 | 161 { |
304 | 162 return ParseTag(name.c_str()); |
0 | 163 } |
164 | |
165 static bool HasTag(const DicomMap& fields, | |
166 const std::string& tagName) | |
167 { | |
304 | 168 return fields.HasTag(ParseTag(tagName)); |
0 | 169 } |
170 | |
171 static const DicomValue& GetValue(const DicomMap& fields, | |
172 const std::string& tagName) | |
173 { | |
304 | 174 return fields.GetValue(ParseTag(tagName)); |
0 | 175 } |
176 | |
177 static void SetValue(DicomMap& target, | |
178 const std::string& tagName, | |
179 DicomValue* value) | |
180 { | |
304 | 181 target.SetValue(ParseTag(tagName), value); |
0 | 182 } |
183 | |
184 static void ToJson(Json::Value& result, | |
1368 | 185 const DicomMap& values, |
186 bool simplify); | |
176 | 187 |
788 | 188 static std::string GenerateUniqueIdentifier(ResourceType level); |
291
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189 |
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190 static bool SaveToMemoryBuffer(std::string& buffer, |
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191 DcmDataset& dataSet); |
1360 | 192 |
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193 static ValueRepresentation Convert(DcmEVR vr); |
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194 |
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195 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
1689 | 196 |
197 static DcmElement* CreateElementForTag(const DicomTag& tag); | |
198 | |
199 static void FillElementWithString(DcmElement& element, | |
200 const DicomTag& tag, | |
1695 | 201 const std::string& utf8alue, // Encoded using UTF-8 |
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202 bool decodeDataUriScheme, |
1695 | 203 Encoding dicomEncoding); |
1689 | 204 |
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205 static DcmElement* FromJson(const DicomTag& tag, |
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206 const Json::Value& element, // Encoded using UTF-8 |
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207 bool decodeDataUriScheme, |
1695 | 208 Encoding dicomEncoding); |
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209 |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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210 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
1934
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FromDcmtkBridge::FromJson
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211 |
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FromDcmtkBridge::FromJson
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212 static Encoding ExtractEncoding(const Json::Value& json, |
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FromDcmtkBridge::FromJson
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213 Encoding defaultEncoding); |
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FromDcmtkBridge::FromJson
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214 |
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FromDcmtkBridge::FromJson
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215 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
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FromDcmtkBridge::FromJson
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216 bool generateIdentifiers, |
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FromDcmtkBridge::FromJson
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217 bool decodeDataUriScheme, |
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FromDcmtkBridge::FromJson
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218 Encoding defaultEncoding); |
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FromDcmtkBridge::LoadFromMemoryBuffer
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219 |
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FromDcmtkBridge::LoadFromMemoryBuffer
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220 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
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FromDcmtkBridge::LoadFromMemoryBuffer
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221 size_t size); |
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New URI "/modalities/.../move" to issue C-Move SCU requests
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222 |
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223 static void FromJson(DicomMap& values, |
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224 const Json::Value& result); |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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225 |
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226 static bool LookupTransferSyntax(std::string& result, |
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227 DcmFileFormat& dicom); |
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dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
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228 |
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macro ORTHANC_ENABLE_LUA for orthanc-wsi
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229 #if ORTHANC_ENABLE_LUA == 1 |
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230 static void ExecuteToDicom(DicomMap& target, |
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231 LuaFunctionCall& call); |
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macro ORTHANC_ENABLE_LUA for orthanc-wsi
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232 #endif |
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233 |
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234 static void ExtractDicomSummary(DicomMap& target, |
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235 DcmItem& dataset); |
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236 |
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237 static void ExtractDicomAsJson(Json::Value& target, |
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ignore-length argument if retrieving DICOM tags
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238 DcmDataset& dataset, |
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239 const std::set<DicomTag>& ignoreTagLength); |
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240 |
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241 static void InitializeCodecs(); |
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242 |
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243 static void FinalizeCodecs(); |
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ITagVisitor - for anonymization relationships
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244 |
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245 static void Apply(DcmItem& dataset, |
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246 ITagVisitor& visitor, |
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247 Encoding defaultEncoding); |
0 | 248 }; |
249 } |