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annotate OrthancServer/Sources/ServerContext.h @ 4685:693f049729ba

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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 08 Jun 2021 18:28:57 +0200
parents 66109d24d26e
children da1edb7d6332
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #include "IServerListener.h"
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37 #include "LuaScripting.h"
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38 #include "OrthancHttpHandler.h"
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39 #include "ServerIndex.h"
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40 #include "ServerJobs/IStorageCommitmentFactory.h"
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41
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42 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h"
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43 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h"
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44 #include "../../OrthancFramework/Sources/DicomParsing/IDicomTranscoder.h"
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45 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomCache.h"
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46 #include "../../OrthancFramework/Sources/MultiThreading/Semaphore.h"
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47
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48
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49 namespace Orthanc
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50 {
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51 class DicomInstanceToStore;
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52 class IStorageArea;
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53 class JobsEngine;
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54 class MetricsRegistry;
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55 class OrthancPlugins;
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56 class ParsedDicomFile;
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57 class RestApiOutput;
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58 class SetOfInstancesJob;
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59 class SharedArchive;
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60 class SharedMessageQueue;
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61 class StorageCommitmentReports;
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62
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63
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64 /**
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65 * This class is responsible for maintaining the storage area on the
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66 * filesystem (including compression), as well as the index of the
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67 * DICOM store. It implements the required locking mechanisms.
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68 **/
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69 class ServerContext :
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70 public IStorageCommitmentFactory,
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71 public IDicomTranscoder,
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72 private JobsRegistry::IObserver
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73 {
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74 friend class ServerIndex; // To access "RemoveFile()"
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75
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76 public:
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77 class ILookupVisitor : public boost::noncopyable
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78 {
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79 public:
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80 virtual ~ILookupVisitor()
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81 {
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82 }
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83
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84 virtual bool IsDicomAsJsonNeeded() const = 0;
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85
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86 virtual void MarkAsComplete() = 0;
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87
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88 // NB: "dicomAsJson" must *not* be deleted, and can be NULL if
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89 // "!IsDicomAsJsonNeeded()"
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90 virtual void Visit(const std::string& publicId,
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91 const std::string& instanceId,
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92 const DicomMap& mainDicomTags,
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93 const Json::Value* dicomAsJson) = 0;
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94 };
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95
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96
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97 private:
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98 class LuaServerListener : public IServerListener
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99 {
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100 private:
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101 ServerContext& context_;
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102
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103 public:
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104 explicit LuaServerListener(ServerContext& context) :
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105 context_(context)
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106 {
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107 }
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108
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109 virtual void SignalStoredInstance(const std::string& publicId,
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110 const DicomInstanceToStore& instance,
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111 const Json::Value& simplifiedTags) ORTHANC_OVERRIDE
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112 {
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113 context_.mainLua_.SignalStoredInstance(publicId, instance, simplifiedTags);
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114 }
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115
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116 virtual void SignalChange(const ServerIndexChange& change) ORTHANC_OVERRIDE
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117 {
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118 context_.mainLua_.SignalChange(change);
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119 }
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120
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121 virtual bool FilterIncomingInstance(const DicomInstanceToStore& instance,
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122 const Json::Value& simplified) ORTHANC_OVERRIDE
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123 {
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124 return context_.filterLua_.FilterIncomingInstance(instance, simplified);
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125 }
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126 };
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127
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128 class ServerListener
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129 {
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130 private:
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131 IServerListener *listener_;
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132 std::string description_;
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133
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134 public:
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135 ServerListener(IServerListener& listener,
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136 const std::string& description) :
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137 listener_(&listener),
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138 description_(description)
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139 {
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140 }
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141
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142 IServerListener& GetListener()
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143 {
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144 return *listener_;
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145 }
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146
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147 const std::string& GetDescription()
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148 {
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149 return description_;
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150 }
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151 };
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152
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153 typedef std::list<ServerListener> ServerListeners;
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154
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155
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156 static void ChangeThread(ServerContext* that,
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157 unsigned int sleepDelay);
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158
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159 static void SaveJobsThread(ServerContext* that,
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160 unsigned int sleepDelay);
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161
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162 void SaveJobsEngine();
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163
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164 virtual void SignalJobSubmitted(const std::string& jobId) ORTHANC_OVERRIDE;
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165
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166 virtual void SignalJobSuccess(const std::string& jobId) ORTHANC_OVERRIDE;
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167
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168 virtual void SignalJobFailure(const std::string& jobId) ORTHANC_OVERRIDE;
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169
224
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170 ServerIndex index_;
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171 IStorageArea& area_;
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172
236
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173 bool compressionEnabled_;
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174 bool storeMD5_;
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175
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176 Semaphore largeDicomThrottler_; // New in Orthanc 1.9.0 (notably for very large DICOM files in WSI)
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177 ParsedDicomCache dicomCache_;
224
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178
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179 LuaScripting mainLua_;
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180 LuaScripting filterLua_;
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181 LuaServerListener luaListener_;
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182 std::unique_ptr<SharedArchive> mediaArchive_;
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183
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184 // The "JobsEngine" must be *after* "LuaScripting", as
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185 // "LuaScripting" embeds "LuaJobManager" that registers as an
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186 // observer to "SequenceOfOperationsJob", whose lifetime
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187 // corresponds to that of "JobsEngine". It must also be after
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188 // "mediaArchive_", as jobs might access this archive.
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189 JobsEngine jobsEngine_;
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190
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191 #if ORTHANC_ENABLE_PLUGINS == 1
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192 OrthancPlugins* plugins_;
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193 #endif
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194
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195 ServerListeners listeners_;
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196 boost::shared_mutex listenersMutex_;
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197
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198 bool done_;
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199 bool haveJobsChanged_;
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200 bool isJobsEngineUnserialized_;
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201 SharedMessageQueue pendingChanges_;
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202 boost::thread changeThread_;
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203 boost::thread saveJobsThread_;
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204
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205 std::unique_ptr<SharedArchive> queryRetrieveArchive_;
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206 std::string defaultLocalAet_;
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207 OrthancHttpHandler httpHandler_;
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208 bool saveJobs_;
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209 FindStorageAccessMode findStorageAccessMode_;
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210 unsigned int limitFindInstances_;
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211 unsigned int limitFindResults_;
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212
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213 std::unique_ptr<MetricsRegistry> metricsRegistry_;
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214 bool isHttpServerSecure_;
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215 bool isExecuteLuaEnabled_;
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216 bool overwriteInstances_;
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217
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218 std::unique_ptr<StorageCommitmentReports> storageCommitmentReports_;
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219
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220 bool transcodeDicomProtocol_;
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221 std::unique_ptr<IDicomTranscoder> dcmtkTranscoder_;
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222 BuiltinDecoderTranscoderOrder builtinDecoderTranscoderOrder_;
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223 bool isIngestTranscoding_;
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224 DicomTransferSyntax ingestTransferSyntax_;
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225 bool ingestTranscodingOfUncompressed_;
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226 bool ingestTranscodingOfCompressed_;
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227
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228 // New in Orthanc 1.9.0
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229 DicomTransferSyntax preferredTransferSyntax_;
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230 boost::mutex dynamicOptionsMutex_;
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231 bool isUnknownSopClassAccepted_;
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232 std::set<DicomTransferSyntax> acceptedTransferSyntaxes_;
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233
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234 StoreStatus StoreAfterTranscoding(std::string& resultPublicId,
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235 DicomInstanceToStore& dicom,
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236 StoreInstanceMode mode);
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237
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238 void ApplyInternal(ILookupVisitor& visitor,
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239 const DatabaseLookup& lookup,
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240 ResourceType queryLevel,
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241 size_t since,
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242 size_t limit);
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243
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244 void PublishDicomCacheMetrics();
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245
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246 // This method must only be called from "ServerIndex"!
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247 void RemoveFile(const std::string& fileUuid,
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248 FileContentType type);
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249
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250 // This DicomModification object is intended to be used as a
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251 // "rules engine" when de-identifying logs for C-Find, C-Get, and
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diff changeset
252 // C-Move queries (new in Orthanc 1.8.2)
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253 DicomModification logsDeidentifierRules_;
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254 bool deidentifyLogs_;
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255
224
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256 public:
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257 class DicomCacheLocker : public boost::noncopyable
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258 {
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259 private:
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260 ServerContext& context_;
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261 std::string instancePublicId_;
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262 std::unique_ptr<ParsedDicomCache::Accessor> accessor_;
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263 std::unique_ptr<ParsedDicomFile> dicom_;
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264 size_t dicomSize_;
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265 std::unique_ptr<Semaphore::Locker> largeDicomLocker_;
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266
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diff changeset
267 public:
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268 DicomCacheLocker(ServerContext& context,
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269 const std::string& instancePublicId);
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270
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271 ~DicomCacheLocker();
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272
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273 ParsedDicomFile& GetDicom() const;
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274 };
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275
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276 ServerContext(IDatabaseWrapper& database,
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277 IStorageArea& area,
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278 bool unitTesting,
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279 size_t maxCompletedJobs);
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280
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281 ~ServerContext();
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282
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283 void SetupJobsEngine(bool unitTesting,
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284 bool loadJobsFromDatabase);
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285
224
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286 ServerIndex& GetIndex()
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287 {
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288 return index_;
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289 }
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290
236
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diff changeset
291 void SetCompressionEnabled(bool enabled);
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diff changeset
292
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293 bool IsCompressionEnabled() const
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294 {
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295 return compressionEnabled_;
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296 }
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297
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298 bool AddAttachment(int64_t& newRevision,
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299 const std::string& resourceId,
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300 FileContentType attachmentType,
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301 const void* data,
4627
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302 size_t size,
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303 bool hasOldRevision,
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66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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304 int64_t oldRevision,
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305 const std::string& oldMD5);
699
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diff changeset
306
1004
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307 StoreStatus Store(std::string& resultPublicId,
3814
023b2a9f3aa1 new enum: StoreInstanceMode
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diff changeset
308 DicomInstanceToStore& dicom,
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diff changeset
309 StoreInstanceMode mode);
1004
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diff changeset
310
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311 void AnswerAttachment(RestApiOutput& output,
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff changeset
312 const std::string& resourceId,
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diff changeset
313 FileContentType content);
226
8a26a8e85edf refactoring to read files
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diff changeset
314
1700
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315 void ChangeAttachmentCompression(const std::string& resourceId,
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diff changeset
316 FileContentType attachmentType,
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diff changeset
317 CompressionType compression);
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diff changeset
318
2124
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diff changeset
319 void ReadDicomAsJson(Json::Value& result,
2409
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320 const std::string& instancePublicId,
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diff changeset
321 const std::set<DicomTag>& ignoreTagLength);
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322
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diff changeset
323 void ReadDicomAsJson(Json::Value& result,
4511
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diff changeset
324 const std::string& instancePublicId);
227
209ca3f6db62 dicom-scu from rest
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diff changeset
325
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diff changeset
326 void ReadDicom(std::string& dicom,
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diff changeset
327 const std::string& instancePublicId);
2124
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diff changeset
328
4511
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diff changeset
329 bool ReadDicomUntilPixelData(std::string& dicom,
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diff changeset
330 const std::string& instancePublicId);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
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diff changeset
331
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
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diff changeset
332 // This method is for low-level operations on "/instances/.../attachments/..."
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff changeset
333 void ReadAttachment(std::string& result,
4627
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diff changeset
334 int64_t& revision,
2128
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diff changeset
335 const std::string& instancePublicId,
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diff changeset
336 FileContentType content,
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diff changeset
337 bool uncompressIfNeeded);
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
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diff changeset
338
695
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diff changeset
339 void SetStoreMD5ForAttachments(bool storeMD5);
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diff changeset
340
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diff changeset
341 bool IsStoreMD5ForAttachments() const
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diff changeset
342 {
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diff changeset
343 return storeMD5_;
695
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diff changeset
344 }
771
537837f50fbb refactoring
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diff changeset
345
2570
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diff changeset
346 JobsEngine& GetJobsEngine()
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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diff changeset
347 {
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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diff changeset
348 return jobsEngine_;
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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diff changeset
349 }
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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parents: 2447
diff changeset
350
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
351 bool DeleteResource(Json::Value& target,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
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diff changeset
352 const std::string& uuid,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
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diff changeset
353 ResourceType expectedType);
1189
6b9b02a16e99 NewChildInstance change type
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diff changeset
354
1198
1169528a9a5f refactoring
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parents: 1189
diff changeset
355 void SignalChange(const ServerIndexChange& change);
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1223
diff changeset
356
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
357 SharedArchive& GetQueryRetrieveArchive()
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parents: 1288
diff changeset
358 {
2940
4767d36679ed refactoring access to Orthanc configuration
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parents: 2876
diff changeset
359 return *queryRetrieveArchive_;
1368
b22ba8c5edbe query retrieve
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parents: 1288
diff changeset
360 }
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
361
2965
9c0b0a6d8b54 MediaArchiveSize configuration option
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parents: 2950
diff changeset
362 SharedArchive& GetMediaArchive()
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
363 {
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
364 return *mediaArchive_;
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
365 }
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
366
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
367 const std::string& GetDefaultLocalApplicationEntityTitle() const
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
368 {
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
369 return defaultLocalAet_;
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
370 }
1433
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parents: 1427
diff changeset
371
2617
912a767911b0 back to a single Lua context
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parents: 2616
diff changeset
372 LuaScripting& GetLuaScripting()
1433
461e7554bff7 refactoring: LuaScripting
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parents: 1427
diff changeset
373 {
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2673
diff changeset
374 return mainLua_;
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
375 }
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
376
1444
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
377 OrthancHttpHandler& GetHttpHandler()
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
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parents: 1436
diff changeset
378 {
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
379 return httpHandler_;
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
380 }
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
381
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
382 void Stop();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
383
3021
2cbafb5d5a62 renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3015
diff changeset
384 void Apply(ILookupVisitor& visitor,
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
385 const DatabaseLookup& lookup,
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
386 ResourceType queryLevel,
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
387 size_t since,
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
388 size_t limit);
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1753
diff changeset
389
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
390 bool LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
391 const std::string& publicId,
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4457
diff changeset
392 ResourceType level,
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
393 MetadataType type);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
394
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
395
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
396 /**
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
397 * Management of the plugins
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
398 **/
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
399
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
400 #if ORTHANC_ENABLE_PLUGINS == 1
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
401 void SetPlugins(OrthancPlugins& plugins);
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
402
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
403 void ResetPlugins();
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
404
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
405 const OrthancPlugins& GetPlugins() const;
1741
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
406
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
407 OrthancPlugins& GetPlugins();
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
408 #endif
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
409
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
410 bool HasPlugins() const;
2626
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
411
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
412 void AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
413 const std::string& publicId);
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
414
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
415 void SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
416
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
417 void SignalUpdatedPeers();
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
418
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
419 MetricsRegistry& GetMetricsRegistry()
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
420 {
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
421 return *metricsRegistry_;
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
422 }
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
423
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
424 void SetHttpServerSecure(bool isSecure)
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
425 {
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
426 isHttpServerSecure_ = isSecure;
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
427 }
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
428
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
429 bool IsHttpServerSecure() const
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
430 {
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
431 return isHttpServerSecure_;
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
432 }
3535
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
433
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
434 void SetExecuteLuaEnabled(bool enabled)
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
435 {
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
436 isExecuteLuaEnabled_ = enabled;
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
437 }
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
438
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
439 bool IsExecuteLuaEnabled() const
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
440 {
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
441 return isExecuteLuaEnabled_;
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
442 }
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
443
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
444 void SetOverwriteInstances(bool overwrite)
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
445 {
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
446 overwriteInstances_ = overwrite;
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
447 }
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
448
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
449 bool IsOverwriteInstances() const
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
450 {
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
451 return overwriteInstances_;
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
452 }
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3762
diff changeset
453
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
454 virtual IStorageCommitmentFactory::ILookupHandler*
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
455 CreateStorageCommitment(const std::string& jobId,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
456 const std::string& transactionUid,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
457 const std::vector<std::string>& sopClassUids,
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
458 const std::vector<std::string>& sopInstanceUids,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
459 const std::string& remoteAet,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
460 const std::string& calledAet) ORTHANC_OVERRIDE;
3736
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
461
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
462 StorageCommitmentReports& GetStorageCommitmentReports()
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
463 {
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
464 return *storageCommitmentReports_;
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
465 }
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
466
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
467 ImageAccessor* DecodeDicomFrame(const std::string& publicId,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
468 unsigned int frameIndex);
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
469
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
470 ImageAccessor* DecodeDicomFrame(const DicomInstanceToStore& dicom,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
471 unsigned int frameIndex);
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3916
diff changeset
472
3980
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
473 ImageAccessor* DecodeDicomFrame(const void* dicom,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
474 size_t size,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
475 unsigned int frameIndex);
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3959
diff changeset
476
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
477 void StoreWithTranscoding(std::string& sopClassUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
478 std::string& sopInstanceUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
479 DicomStoreUserConnection& connection,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
480 const std::string& dicom,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
481 bool hasMoveOriginator,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
482 const std::string& moveOriginatorAet,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
483 uint16_t moveOriginatorId);
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
484
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
485 // This method can be used even if the global option
3911
0ef7f4528be2 renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3910
diff changeset
486 // "TranscodeDicomProtocol" is set to "false"
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
487 virtual bool Transcode(DicomImage& target,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
488 DicomImage& source /* in, "GetParsed()" possibly modified */,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
489 const std::set<DicomTransferSyntax>& allowedSyntaxes,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
490 bool allowNewSopInstanceUid) ORTHANC_OVERRIDE;
3959
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
491
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
492 bool IsTranscodeDicomProtocol() const
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
493 {
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
494 return transcodeDicomProtocol_;
76a24be12912 c-get: support of transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
495 }
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4205
diff changeset
496
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
497 const std::string& GetDeidentifiedContent(const DicomElement& element) const;
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
498
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
499 void GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
500
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
501 void SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
502
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
503 bool IsUnknownSopClassAccepted();
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
504
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
505 void SetUnknownSopClassAccepted(bool accepted);
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 };
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }