Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestModalities.cpp @ 807:566a2fb3c1fb

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update/delete modalities
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 07 May 2014 15:54:23 +0200
parents 557575fd93e9
children 2d9a000aa3a6
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "OrthancRestApi.h"
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34
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35 #include "../OrthancInitialization.h"
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36 #include "../../Core/HttpClient.h"
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37 #include "../FromDcmtkBridge.h"
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38
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39 #include <glog/logging.h>
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40
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41 namespace Orthanc
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42 {
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43 // DICOM SCU ----------------------------------------------------------------
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44
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45 static bool MergeQueryAndTemplate(DicomMap& result,
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46 const std::string& postData)
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47 {
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48 Json::Value query;
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49 Json::Reader reader;
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50
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51 if (!reader.parse(postData, query) ||
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52 query.type() != Json::objectValue)
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53 {
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54 return false;
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55 }
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56
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57 Json::Value::Members members = query.getMemberNames();
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58 for (size_t i = 0; i < members.size(); i++)
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59 {
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60 DicomTag t = FromDcmtkBridge::ParseTag(members[i]);
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61 result.SetValue(t, query[members[i]].asString());
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62 }
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63
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64 return true;
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65 }
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66
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67 static void DicomFindPatient(RestApi::PostCall& call)
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68 {
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69 ServerContext& context = OrthancRestApi::GetContext(call);
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70
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71 DicomMap m;
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72 DicomMap::SetupFindPatientTemplate(m);
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73 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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74 {
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75 return;
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76 }
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77
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78 RemoteModalityParameters remote = GetModalityUsingSymbolicName(call.GetUriComponent("id", ""));
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79 ReusableDicomUserConnection::Locker locker(context.GetReusableDicomUserConnection(), remote);
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80
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81 DicomFindAnswers answers;
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82 locker.GetConnection().FindPatient(answers, m);
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83
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84 Json::Value result;
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85 answers.ToJson(result);
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86 call.GetOutput().AnswerJson(result);
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87 }
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88
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89 static void DicomFindStudy(RestApi::PostCall& call)
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90 {
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91 ServerContext& context = OrthancRestApi::GetContext(call);
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92
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93 DicomMap m;
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94 DicomMap::SetupFindStudyTemplate(m);
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95 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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96 {
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97 return;
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98 }
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99
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100 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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101 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2)
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102 {
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103 return;
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104 }
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105
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106 RemoteModalityParameters remote = GetModalityUsingSymbolicName(call.GetUriComponent("id", ""));
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107 ReusableDicomUserConnection::Locker locker(context.GetReusableDicomUserConnection(), remote);
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108
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109 DicomFindAnswers answers;
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110 locker.GetConnection().FindStudy(answers, m);
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111
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112 Json::Value result;
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113 answers.ToJson(result);
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114 call.GetOutput().AnswerJson(result);
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115 }
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116
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117 static void DicomFindSeries(RestApi::PostCall& call)
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118 {
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119 ServerContext& context = OrthancRestApi::GetContext(call);
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120
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121 DicomMap m;
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122 DicomMap::SetupFindSeriesTemplate(m);
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123 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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124 {
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125 return;
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126 }
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127
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128 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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129 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) ||
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130 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2)
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131 {
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132 return;
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133 }
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134
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135 RemoteModalityParameters remote = GetModalityUsingSymbolicName(call.GetUriComponent("id", ""));
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136 ReusableDicomUserConnection::Locker locker(context.GetReusableDicomUserConnection(), remote);
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137
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138 DicomFindAnswers answers;
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139 locker.GetConnection().FindSeries(answers, m);
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140
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141 Json::Value result;
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142 answers.ToJson(result);
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143 call.GetOutput().AnswerJson(result);
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144 }
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145
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146 static void DicomFindInstance(RestApi::PostCall& call)
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147 {
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148 ServerContext& context = OrthancRestApi::GetContext(call);
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149
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150 DicomMap m;
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151 DicomMap::SetupFindInstanceTemplate(m);
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152 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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153 {
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154 return;
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155 }
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156
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157 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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158 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) ||
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159 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2 ||
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160 m.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString().size() <= 2)
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161 {
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162 return;
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163 }
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164
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165 RemoteModalityParameters remote = GetModalityUsingSymbolicName(call.GetUriComponent("id", ""));
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166 ReusableDicomUserConnection::Locker locker(context.GetReusableDicomUserConnection(), remote);
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167
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168 DicomFindAnswers answers;
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169 locker.GetConnection().FindInstance(answers, m);
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170
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171 Json::Value result;
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172 answers.ToJson(result);
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173 call.GetOutput().AnswerJson(result);
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174 }
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175
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176 static void DicomFind(RestApi::PostCall& call)
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177 {
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178 ServerContext& context = OrthancRestApi::GetContext(call);
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179
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180 DicomMap m;
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181 DicomMap::SetupFindPatientTemplate(m);
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182 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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183 {
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184 return;
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185 }
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186
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187 RemoteModalityParameters remote = GetModalityUsingSymbolicName(call.GetUriComponent("id", ""));
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188 ReusableDicomUserConnection::Locker locker(context.GetReusableDicomUserConnection(), remote);
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189
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190 DicomFindAnswers patients;
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191 locker.GetConnection().FindPatient(patients, m);
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192
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193 // Loop over the found patients
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194 Json::Value result = Json::arrayValue;
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195 for (size_t i = 0; i < patients.GetSize(); i++)
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196 {
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197 Json::Value patient(Json::objectValue);
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198 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i));
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199
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200 DicomMap::SetupFindStudyTemplate(m);
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201 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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202 {
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203 return;
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204 }
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205 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID);
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206
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207 DicomFindAnswers studies;
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208 locker.GetConnection().FindStudy(studies, m);
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209
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210 patient["Studies"] = Json::arrayValue;
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211
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212 // Loop over the found studies
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213 for (size_t j = 0; j < studies.GetSize(); j++)
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214 {
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215 Json::Value study(Json::objectValue);
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216 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j));
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217
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218 DicomMap::SetupFindSeriesTemplate(m);
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219 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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220 {
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221 return;
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222 }
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223 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID);
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224 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID);
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225
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226 DicomFindAnswers series;
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227 locker.GetConnection().FindSeries(series, m);
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228
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229 // Loop over the found series
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230 study["Series"] = Json::arrayValue;
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231 for (size_t k = 0; k < series.GetSize(); k++)
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232 {
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233 Json::Value series2(Json::objectValue);
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234 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k));
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235 study["Series"].append(series2);
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236 }
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237
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238 patient["Studies"].append(study);
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239 }
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240
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241 result.append(patient);
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242 }
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243
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244 call.GetOutput().AnswerJson(result);
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245 }
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246
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247
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248 static bool GetInstancesToExport(std::list<std::string>& instances,
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249 const std::string& remote,
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250 RestApi::PostCall& call)
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251 {
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252 ServerContext& context = OrthancRestApi::GetContext(call);
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253
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254 std::string stripped = Toolbox::StripSpaces(call.GetPostBody());
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255
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256 Json::Value request;
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257 if (Toolbox::IsSHA1(stripped))
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258 {
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259 // This is for compatibility with Orthanc <= 0.5.1.
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260 request = stripped;
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261 }
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262 else if (!call.ParseJsonRequest(request))
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263 {
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264 // Bad JSON request
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265 return false;
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266 }
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267
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268 if (request.isString())
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269 {
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270 context.GetIndex().LogExportedResource(request.asString(), remote);
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271 context.GetIndex().GetChildInstances(instances, request.asString());
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272 }
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273 else if (request.isArray())
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274 {
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275 for (Json::Value::ArrayIndex i = 0; i < request.size(); i++)
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276 {
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277 if (!request[i].isString())
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278 {
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279 return false;
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280 }
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281
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282 std::string stripped = Toolbox::StripSpaces(request[i].asString());
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283 if (!Toolbox::IsSHA1(stripped))
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284 {
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285 return false;
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286 }
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287
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288 context.GetIndex().LogExportedResource(stripped, remote);
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289
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290 std::list<std::string> tmp;
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291 context.GetIndex().GetChildInstances(tmp, stripped);
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292
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293 for (std::list<std::string>::const_iterator
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294 it = tmp.begin(); it != tmp.end(); ++it)
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295 {
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296 instances.push_back(*it);
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297 }
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298 }
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299 }
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300 else
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301 {
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302 // Neither a string, nor a list of strings. Bad request.
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303 return false;
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304 }
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305
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306 return true;
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307 }
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308
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309
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310 static void DicomStore(RestApi::PostCall& call)
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311 {
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312 ServerContext& context = OrthancRestApi::GetContext(call);
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313
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314 std::string remote = call.GetUriComponent("id", "");
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315
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316 std::list<std::string> instances;
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317 if (!GetInstancesToExport(instances, remote, call))
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318 {
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319 return;
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320 }
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321
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322 RemoteModalityParameters p = GetModalityUsingSymbolicName(remote);
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323 ReusableDicomUserConnection::Locker locker(context.GetReusableDicomUserConnection(), p);
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324
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325 for (std::list<std::string>::const_iterator
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326 it = instances.begin(); it != instances.end(); ++it)
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327 {
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328 LOG(INFO) << "Sending resource " << *it << " to modality \"" << remote << "\"";
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329
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330 std::string dicom;
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331 context.ReadFile(dicom, *it, FileContentType_Dicom);
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332 locker.GetConnection().Store(dicom);
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333 }
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334
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335 call.GetOutput().AnswerBuffer("{}", "application/json");
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336 }
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337
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338
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339 // Orthanc Peers ------------------------------------------------------------
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340
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341 static bool IsExistingPeer(const OrthancRestApi::SetOfStrings& peers,
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342 const std::string& id)
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343 {
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344 return peers.find(id) != peers.end();
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345 }
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346
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347 static void ListPeers(RestApi::GetCall& call)
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348 {
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349 OrthancRestApi::SetOfStrings peers;
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350 GetListOfOrthancPeers(peers);
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351
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352 Json::Value result = Json::arrayValue;
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353 for (OrthancRestApi::SetOfStrings::const_iterator
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354 it = peers.begin(); it != peers.end(); ++it)
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355 {
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356 result.append(*it);
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357 }
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358
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diff changeset
359 call.GetOutput().AnswerJson(result);
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diff changeset
360 }
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361
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362 static void ListPeerOperations(RestApi::GetCall& call)
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363 {
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364 OrthancRestApi::SetOfStrings peers;
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365 GetListOfOrthancPeers(peers);
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diff changeset
366
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367 std::string id = call.GetUriComponent("id", "");
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368 if (IsExistingPeer(peers, id))
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diff changeset
369 {
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370 Json::Value result = Json::arrayValue;
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diff changeset
371 result.append("store");
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diff changeset
372 call.GetOutput().AnswerJson(result);
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373 }
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374 }
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375
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diff changeset
376 static void PeerStore(RestApi::PostCall& call)
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diff changeset
377 {
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diff changeset
378 ServerContext& context = OrthancRestApi::GetContext(call);
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379
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diff changeset
380 std::string remote = call.GetUriComponent("id", "");
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381
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diff changeset
382 std::list<std::string> instances;
5197fd35333c refactoring of OrthancRestApi
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diff changeset
383 if (!GetInstancesToExport(instances, remote, call))
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diff changeset
384 {
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diff changeset
385 return;
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diff changeset
386 }
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diff changeset
387
806
557575fd93e9 refactoring
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diff changeset
388 OrthancPeerParameters peer;
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diff changeset
389 GetOrthancPeer(peer, remote);
751
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390
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391 // Configure the HTTP client
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diff changeset
392 HttpClient client;
806
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diff changeset
393 if (peer.GetUsername().size() != 0 &&
557575fd93e9 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
394 peer.GetPassword().size() != 0)
751
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diff changeset
395 {
806
557575fd93e9 refactoring
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diff changeset
396 client.SetCredentials(peer.GetUsername().c_str(),
557575fd93e9 refactoring
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parents: 795
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397 peer.GetPassword().c_str());
751
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diff changeset
398 }
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diff changeset
399
806
557575fd93e9 refactoring
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parents: 795
diff changeset
400 client.SetUrl(peer.GetUrl() + "instances");
751
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diff changeset
401 client.SetMethod(HttpMethod_Post);
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parents:
diff changeset
402
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
403 // Loop over the instances that are to be sent
5197fd35333c refactoring of OrthancRestApi
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diff changeset
404 for (std::list<std::string>::const_iterator
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parents:
diff changeset
405 it = instances.begin(); it != instances.end(); ++it)
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parents:
diff changeset
406 {
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parents:
diff changeset
407 LOG(INFO) << "Sending resource " << *it << " to peer \"" << remote << "\"";
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
409 context.ReadFile(client.AccessPostData(), *it, FileContentType_Dicom);
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parents:
diff changeset
410
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parents:
diff changeset
411 std::string answer;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 if (!client.Apply(answer))
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
414 LOG(ERROR) << "Unable to send resource " << *it << " to peer \"" << remote << "\"";
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parents:
diff changeset
415 return;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
416 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418
5197fd35333c refactoring of OrthancRestApi
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diff changeset
419 call.GetOutput().AnswerBuffer("{}", "application/json");
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parents:
diff changeset
420 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
421
5197fd35333c refactoring of OrthancRestApi
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diff changeset
422
5197fd35333c refactoring of OrthancRestApi
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diff changeset
423 // DICOM bridge -------------------------------------------------------------
5197fd35333c refactoring of OrthancRestApi
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diff changeset
424
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
425 static bool IsExistingModality(const OrthancRestApi::SetOfStrings& modalities,
5197fd35333c refactoring of OrthancRestApi
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426 const std::string& id)
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427 {
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428 return modalities.find(id) != modalities.end();
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429 }
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430
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431 static void ListModalities(RestApi::GetCall& call)
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432 {
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433 OrthancRestApi::SetOfStrings modalities;
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434 GetListOfDicomModalities(modalities);
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435
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436 Json::Value result = Json::arrayValue;
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437 for (OrthancRestApi::SetOfStrings::const_iterator
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438 it = modalities.begin(); it != modalities.end(); ++it)
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439 {
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440 result.append(*it);
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441 }
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442
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443 call.GetOutput().AnswerJson(result);
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444 }
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445
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446
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447 static void ListModalityOperations(RestApi::GetCall& call)
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448 {
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449 OrthancRestApi::SetOfStrings modalities;
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450 GetListOfDicomModalities(modalities);
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451
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452 std::string id = call.GetUriComponent("id", "");
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453 if (IsExistingModality(modalities, id))
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454 {
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455 Json::Value result = Json::arrayValue;
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456 result.append("find-patient");
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457 result.append("find-study");
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458 result.append("find-series");
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459 result.append("find-instance");
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460 result.append("find");
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461 result.append("store");
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462 call.GetOutput().AnswerJson(result);
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463 }
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464 }
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465
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466
807
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467 static void UpdateModality(RestApi::PutCall& call)
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468 {
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469 Json::Value json;
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470 Json::Reader reader;
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471 if (reader.parse(call.GetPutBody(), json))
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472 {
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473 RemoteModalityParameters modality;
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474 modality.FromJson(json);
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475 modality.SetName(call.GetUriComponent("id", ""));
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476 UpdateModality(modality);
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477 }
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478 }
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479
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480
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481 static void DeleteModality(RestApi::DeleteCall& call)
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482 {
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483 RemoveModality(call.GetUriComponent("id", ""));
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484 }
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485
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486
751
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487 void OrthancRestApi::RegisterModalities()
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488 {
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489 Register("/modalities", ListModalities);
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490 Register("/modalities/{id}", ListModalityOperations);
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491 Register("/modalities/{id}", UpdateModality);
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492 Register("/modalities/{id}", DeleteModality);
751
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493 Register("/modalities/{id}/find-patient", DicomFindPatient);
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494 Register("/modalities/{id}/find-study", DicomFindStudy);
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495 Register("/modalities/{id}/find-series", DicomFindSeries);
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496 Register("/modalities/{id}/find-instance", DicomFindInstance);
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497 Register("/modalities/{id}/find", DicomFind);
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498 Register("/modalities/{id}/store", DicomStore);
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499
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500 Register("/peers", ListPeers);
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501 Register("/peers/{id}", ListPeerOperations);
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502 Register("/peers/{id}/store", PeerStore);
807
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503
751
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504 }
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505 }