Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.cpp @ 4488:50b3f4c8107e
fix missing include for Debian unstable
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 29 Jan 2021 09:46:47 +0100 |
parents | 6831de40acd9 |
children | 39192eb9b43d |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
4045 | 41 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
43 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h" | |
44 #include "../../OrthancFramework/Sources/Logging.h" | |
45 #include "../../OrthancFramework/Sources/Toolbox.h" | |
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46 |
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47 #include "Database/ResourcesContent.h" |
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48 #include "DicomInstanceToStore.h" |
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49 #include "OrthancConfiguration.h" |
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50 #include "Search/DatabaseLookup.h" |
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51 #include "Search/DicomTagConstraint.h" |
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52 #include "ServerContext.h" |
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53 #include "ServerIndexChange.h" |
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54 #include "ServerToolbox.h" |
0 | 55 |
56 #include <boost/lexical_cast.hpp> | |
57 #include <stdio.h> | |
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58 #include <stack> |
0 | 59 |
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60 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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61 |
62 | 62 namespace Orthanc |
0 | 63 { |
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64 static void CopyListToVector(std::vector<std::string>& target, |
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65 const std::list<std::string>& source) |
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66 { |
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67 target.resize(source.size()); |
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68 |
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69 size_t pos = 0; |
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70 |
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71 for (std::list<std::string>::const_iterator |
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72 it = source.begin(); it != source.end(); ++it) |
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73 { |
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74 target[pos] = *it; |
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75 pos ++; |
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76 } |
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77 } |
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78 |
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79 |
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80 class ServerIndex::Listener : public IDatabaseListener |
0 | 81 { |
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82 private: |
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83 struct FileToRemove |
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84 { |
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85 private: |
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86 std::string uuid_; |
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87 FileContentType type_; |
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88 |
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89 public: |
4205 | 90 explicit FileToRemove(const FileInfo& info) : |
91 uuid_(info.GetUuid()), | |
92 type_(info.GetContentType()) | |
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93 { |
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94 } |
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95 |
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96 const std::string& GetUuid() const |
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97 { |
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98 return uuid_; |
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99 } |
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100 |
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101 FileContentType GetContentType() const |
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102 { |
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103 return type_; |
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104 } |
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105 }; |
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106 |
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107 ServerContext& context_; |
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108 bool hasRemainingLevel_; |
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109 ResourceType remainingType_; |
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110 std::string remainingPublicId_; |
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111 std::list<FileToRemove> pendingFilesToRemove_; |
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112 std::list<ServerIndexChange> pendingChanges_; |
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113 uint64_t sizeOfFilesToRemove_; |
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114 bool insideTransaction_; |
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115 |
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116 void Reset() |
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117 { |
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118 sizeOfFilesToRemove_ = 0; |
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119 hasRemainingLevel_ = false; |
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120 pendingFilesToRemove_.clear(); |
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121 pendingChanges_.clear(); |
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122 } |
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123 |
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124 public: |
4205 | 125 explicit Listener(ServerContext& context) : |
126 context_(context), | |
127 insideTransaction_(false) | |
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128 { |
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129 Reset(); |
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130 assert(ResourceType_Patient < ResourceType_Study && |
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131 ResourceType_Study < ResourceType_Series && |
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132 ResourceType_Series < ResourceType_Instance); |
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133 } |
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134 |
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135 void StartTransaction() |
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136 { |
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137 Reset(); |
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138 insideTransaction_ = true; |
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139 } |
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140 |
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141 void EndTransaction() |
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142 { |
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143 insideTransaction_ = false; |
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144 } |
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145 |
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146 uint64_t GetSizeOfFilesToRemove() |
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147 { |
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148 return sizeOfFilesToRemove_; |
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149 } |
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150 |
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151 void CommitFilesToRemove() |
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152 { |
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153 for (std::list<FileToRemove>::const_iterator |
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154 it = pendingFilesToRemove_.begin(); |
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155 it != pendingFilesToRemove_.end(); ++it) |
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156 { |
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157 try |
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158 { |
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159 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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160 } |
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161 catch (OrthancException& e) |
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162 { |
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163 LOG(ERROR) << "Unable to remove an attachment from the storage area: " |
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164 << it->GetUuid() << " (type: " << EnumerationToString(it->GetContentType()) << ")"; |
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165 } |
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166 } |
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167 } |
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168 |
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169 void CommitChanges() |
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170 { |
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171 for (std::list<ServerIndexChange>::const_iterator |
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172 it = pendingChanges_.begin(); |
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173 it != pendingChanges_.end(); ++it) |
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174 { |
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175 context_.SignalChange(*it); |
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176 } |
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177 } |
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178 |
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179 virtual void SignalRemainingAncestor(ResourceType parentType, |
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180 const std::string& publicId) |
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181 { |
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182 LOG(TRACE) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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183 |
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184 if (hasRemainingLevel_) |
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185 { |
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186 if (parentType < remainingType_) |
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187 { |
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188 remainingType_ = parentType; |
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189 remainingPublicId_ = publicId; |
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190 } |
1158 | 191 } |
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192 else |
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193 { |
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194 hasRemainingLevel_ = true; |
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195 remainingType_ = parentType; |
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196 remainingPublicId_ = publicId; |
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197 } |
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198 } |
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199 |
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200 virtual void SignalFileDeleted(const FileInfo& info) |
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201 { |
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202 assert(Toolbox::IsUuid(info.GetUuid())); |
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203 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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204 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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205 } |
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206 |
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207 virtual void SignalChange(const ServerIndexChange& change) |
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208 { |
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209 LOG(TRACE) << "Change related to resource " << change.GetPublicId() << " of type " |
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210 << EnumerationToString(change.GetResourceType()) << ": " |
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211 << EnumerationToString(change.GetChangeType()); |
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212 |
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213 if (insideTransaction_) |
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214 { |
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215 pendingChanges_.push_back(change); |
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216 } |
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217 else |
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218 { |
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219 context_.SignalChange(change); |
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220 } |
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221 } |
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222 |
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223 bool HasRemainingLevel() const |
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224 { |
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225 return hasRemainingLevel_; |
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226 } |
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227 |
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228 ResourceType GetRemainingType() const |
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229 { |
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230 assert(HasRemainingLevel()); |
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231 return remainingType_; |
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232 } |
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233 |
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234 const std::string& GetRemainingPublicId() const |
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235 { |
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236 assert(HasRemainingLevel()); |
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237 return remainingPublicId_; |
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238 } |
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239 }; |
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241 | |
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242 class ServerIndex::Transaction |
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243 { |
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244 private: |
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245 ServerIndex& index_; |
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246 std::unique_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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247 bool isCommitted_; |
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249 public: |
4205 | 250 explicit Transaction(ServerIndex& index) : |
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251 index_(index), |
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252 isCommitted_(false) |
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253 { |
1247 | 254 transaction_.reset(index_.db_.StartTransaction()); |
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255 transaction_->Begin(); |
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256 |
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257 index_.listener_->StartTransaction(); |
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258 } |
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259 |
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260 ~Transaction() |
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261 { |
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262 index_.listener_->EndTransaction(); |
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263 |
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264 if (!isCommitted_) |
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265 { |
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266 transaction_->Rollback(); |
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267 } |
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268 } |
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269 |
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270 void Commit(uint64_t sizeOfAddedFiles) |
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271 { |
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272 if (!isCommitted_) |
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273 { |
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274 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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275 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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276 |
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277 transaction_->Commit(delta); |
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278 |
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279 // We can remove the files once the SQLite transaction has |
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280 // been successfully committed. Some files might have to be |
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281 // deleted because of recycling. |
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282 index_.listener_->CommitFilesToRemove(); |
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283 |
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284 // Send all the pending changes to the Orthanc plugins |
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285 index_.listener_->CommitChanges(); |
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286 |
278
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287 isCommitted_ = true; |
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288 } |
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289 } |
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290 }; |
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291 |
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292 |
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293 class ServerIndex::UnstableResourcePayload |
511
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294 { |
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295 private: |
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296 ResourceType type_; |
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297 std::string publicId_; |
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298 boost::posix_time::ptime time_; |
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299 |
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300 public: |
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301 UnstableResourcePayload() : type_(ResourceType_Instance) |
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302 { |
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303 } |
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304 |
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305 UnstableResourcePayload(Orthanc::ResourceType type, |
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306 const std::string& publicId) : |
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307 type_(type), |
4205 | 308 publicId_(publicId), |
309 time_(boost::posix_time::second_clock::local_time()) | |
511
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310 { |
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311 } |
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312 |
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313 unsigned int GetAge() const |
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314 { |
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315 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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316 } |
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317 |
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318 ResourceType GetResourceType() const |
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319 { |
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320 return type_; |
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321 } |
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322 |
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323 const std::string& GetPublicId() const |
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324 { |
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325 return publicId_; |
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326 } |
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327 }; |
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328 |
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329 |
3027 | 330 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
331 { | |
332 private: | |
333 class TagInfo | |
334 { | |
335 private: | |
336 ResourceType level_; | |
337 DicomTagType type_; | |
338 | |
339 public: | |
340 TagInfo() | |
341 { | |
342 } | |
343 | |
344 TagInfo(ResourceType level, | |
345 DicomTagType type) : | |
346 level_(level), | |
347 type_(type) | |
348 { | |
349 } | |
350 | |
351 ResourceType GetLevel() const | |
352 { | |
353 return level_; | |
354 } | |
355 | |
356 DicomTagType GetType() const | |
357 { | |
358 return type_; | |
359 } | |
360 }; | |
361 | |
362 typedef std::map<DicomTag, TagInfo> Registry; | |
363 | |
364 | |
365 Registry registry_; | |
366 | |
367 void LoadTags(ResourceType level) | |
368 { | |
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369 { |
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370 const DicomTag* tags = NULL; |
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371 size_t size; |
3027 | 372 |
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373 ServerToolbox::LoadIdentifiers(tags, size, level); |
3027 | 374 |
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375 for (size_t i = 0; i < size; i++) |
3027 | 376 { |
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377 if (registry_.find(tags[i]) == registry_.end()) |
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378 { |
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379 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); |
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380 } |
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381 else |
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382 { |
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383 // These patient-level tags are copied in the study level |
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384 assert(level == ResourceType_Study && |
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385 (tags[i] == DICOM_TAG_PATIENT_ID || |
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386 tags[i] == DICOM_TAG_PATIENT_NAME || |
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387 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); |
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388 } |
3027 | 389 } |
390 } | |
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391 |
3027 | 392 { |
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393 std::set<DicomTag> tags; |
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394 DicomMap::GetMainDicomTags(tags, level); |
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395 |
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396 for (std::set<DicomTag>::const_iterator |
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397 tag = tags.begin(); tag != tags.end(); ++tag) |
3027 | 398 { |
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399 if (registry_.find(*tag) == registry_.end()) |
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400 { |
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401 registry_[*tag] = TagInfo(level, DicomTagType_Main); |
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402 } |
3027 | 403 } |
404 } | |
405 } | |
406 | |
407 public: | |
408 MainDicomTagsRegistry() | |
409 { | |
410 LoadTags(ResourceType_Patient); | |
411 LoadTags(ResourceType_Study); | |
412 LoadTags(ResourceType_Series); | |
413 LoadTags(ResourceType_Instance); | |
414 } | |
415 | |
416 void LookupTag(ResourceType& level, | |
417 DicomTagType& type, | |
418 const DicomTag& tag) const | |
419 { | |
420 Registry::const_iterator it = registry_.find(tag); | |
421 | |
422 if (it == registry_.end()) | |
423 { | |
424 // Default values | |
425 level = ResourceType_Instance; | |
426 type = DicomTagType_Generic; | |
427 } | |
428 else | |
429 { | |
430 level = it->second.GetLevel(); | |
431 type = it->second.GetType(); | |
432 } | |
433 } | |
434 }; | |
435 | |
436 | |
212 | 437 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 438 const std::string& uuid, |
202 | 439 ResourceType expectedType) |
0 | 440 { |
206
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441 boost::mutex::scoped_lock lock(mutex_); |
201
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442 |
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443 Transaction t(*this); |
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444 |
202 | 445 int64_t id; |
446 ResourceType type; | |
1294 | 447 if (!db_.LookupResource(id, type, uuid) || |
202 | 448 expectedType != type) |
0 | 449 { |
450 return false; | |
451 } | |
202 | 452 |
1247 | 453 db_.DeleteResource(id); |
0 | 454 |
202 | 455 if (listener_->HasRemainingLevel()) |
0 | 456 { |
4205 | 457 ResourceType remainingType = listener_->GetRemainingType(); |
458 const std::string& remainingUuid = listener_->GetRemainingPublicId(); | |
0 | 459 |
460 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
4205 | 461 target["RemainingAncestor"]["Path"] = GetBasePath(remainingType, remainingUuid); |
462 target["RemainingAncestor"]["Type"] = EnumerationToString(remainingType); | |
463 target["RemainingAncestor"]["ID"] = remainingUuid; | |
0 | 464 } |
465 else | |
466 { | |
467 target["RemainingAncestor"] = Json::nullValue; | |
468 } | |
469 | |
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470 t.Commit(0); |
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471 |
0 | 472 return true; |
473 } | |
474 | |
475 | |
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476 void ServerIndex::FlushThread(ServerIndex* that, |
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477 unsigned int threadSleep) |
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478 { |
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479 // By default, wait for 10 seconds before flushing |
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480 unsigned int sleep = 10; |
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481 |
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482 try |
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483 { |
744 | 484 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 485 std::string sleepString; |
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486 |
1247 | 487 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 488 Toolbox::IsInteger(sleepString)) |
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489 { |
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490 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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491 } |
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492 } |
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493 catch (boost::bad_lexical_cast&) |
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494 { |
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495 } |
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496 |
206
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497 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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498 |
511
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499 unsigned int count = 0; |
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500 |
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501 while (!that->done_) |
206
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502 { |
2665
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503 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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504 count++; |
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505 if (count < sleep) |
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506 { |
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507 continue; |
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508 } |
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509 |
2217 | 510 Logging::Flush(); |
511 | |
511
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512 boost::mutex::scoped_lock lock(that->mutex_); |
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513 |
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514 try |
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515 { |
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516 that->db_.FlushToDisk(); |
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517 } |
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518 catch (OrthancException&) |
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519 { |
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520 LOG(ERROR) << "Cannot flush the SQLite database to the disk (is your filesystem full?)"; |
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521 } |
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522 |
511
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523 count = 0; |
206
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524 } |
511
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525 |
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526 LOG(INFO) << "Stopping the database flushing thread"; |
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527 } |
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528 |
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529 |
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530 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 531 const DicomMap& dicomSummary) |
532 { | |
533 try | |
534 { | |
656 | 535 const DicomValue* value; |
536 const DicomValue* value2; | |
537 | |
433 | 538 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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539 !value->IsNull() && |
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540 !value->IsBinary() && |
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541 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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542 !value2->IsNull() && |
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543 !value2->IsBinary()) |
433 | 544 { |
545 // Patch for series with temporal positions thanks to Will Ryder | |
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546 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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547 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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548 target = imagesInAcquisition * countTemporalPositions; |
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549 return (target > 0); |
433 | 550 } |
551 | |
552 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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553 !value->IsNull() && |
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554 !value->IsBinary() && |
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555 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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556 !value2->IsBinary() && |
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557 !value2->IsNull()) |
433 | 558 { |
559 // Support of Cardio-PET images | |
1737
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560 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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561 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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562 target = numberOfSlices * numberOfTimeSlices; |
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563 return (target > 0); |
433 | 564 } |
565 | |
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566 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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567 !value->IsNull() && |
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568 !value->IsBinary()) |
433 | 569 { |
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570 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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571 return (target > 0); |
433 | 572 } |
573 } | |
1737
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574 catch (OrthancException&) |
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575 { |
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576 } |
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577 catch (boost::bad_lexical_cast&) |
433 | 578 { |
579 } | |
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580 |
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581 return false; |
433 | 582 } |
583 | |
584 | |
1237 | 585 |
586 | |
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587 static bool LookupStringMetadata(std::string& result, |
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588 const std::map<MetadataType, std::string>& metadata, |
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589 MetadataType type) |
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590 { |
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591 std::map<MetadataType, std::string>::const_iterator found = metadata.find(type); |
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592 |
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593 if (found == metadata.end()) |
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594 { |
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595 return false; |
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596 } |
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597 else |
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598 { |
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599 result = found->second; |
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600 return true; |
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601 } |
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602 } |
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603 |
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|
604 |
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605 static bool LookupIntegerMetadata(int64_t& result, |
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606 const std::map<MetadataType, std::string>& metadata, |
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607 MetadataType type) |
1237 | 608 { |
1238 | 609 std::string s; |
3187
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610 if (!LookupStringMetadata(s, metadata, type)) |
1237 | 611 { |
612 return false; | |
613 } | |
614 | |
615 try | |
616 { | |
1238 | 617 result = boost::lexical_cast<int64_t>(s); |
1237 | 618 return true; |
619 } | |
620 catch (boost::bad_lexical_cast&) | |
621 { | |
622 return false; | |
623 } | |
624 } | |
625 | |
626 | |
1297 | 627 void ServerIndex::LogChange(int64_t internalId, |
628 ChangeType changeType, | |
629 ResourceType resourceType, | |
630 const std::string& publicId) | |
631 { | |
632 ServerIndexChange change(changeType, resourceType, publicId); | |
1300
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633 |
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634 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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635 { |
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636 db_.LogChange(internalId, change); |
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637 } |
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|
638 |
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|
639 assert(listener_.get() != NULL); |
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640 listener_->SignalChange(change); |
1297 | 641 } |
642 | |
1237 | 643 |
644 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
645 { | |
646 std::string oldValue; | |
647 | |
1247 | 648 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 649 { |
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|
650 uint64_t oldNumber; |
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651 |
1237 | 652 try |
653 { | |
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changeset
|
654 oldNumber = boost::lexical_cast<uint64_t>(oldValue); |
1237 | 655 } |
656 catch (boost::bad_lexical_cast&) | |
657 { | |
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|
658 LOG(ERROR) << "Cannot read the global sequence " |
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659 << boost::lexical_cast<std::string>(property) << ", resetting it"; |
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660 oldNumber = 0; |
1237 | 661 } |
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662 |
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663 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
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664 return oldNumber + 1; |
1237 | 665 } |
666 else | |
667 { | |
668 // Initialize the sequence at "1" | |
1247 | 669 db_.SetGlobalProperty(property, "1"); |
1237 | 670 return 1; |
671 } | |
672 } | |
673 | |
674 | |
675 | |
226
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676 ServerIndex::ServerIndex(ServerContext& context, |
2665
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677 IDatabaseWrapper& db, |
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678 unsigned int threadSleep) : |
511
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679 done_(false), |
1247 | 680 db_(db), |
269
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681 maximumStorageSize_(0), |
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682 maximumPatients_(0), |
3027 | 683 mainDicomTagsRegistry_(new MainDicomTagsRegistry) |
186
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684 { |
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685 listener_.reset(new Listener(context)); |
1247 | 686 db_.SetListener(*listener_); |
180
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687 |
269
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688 // Initial recycling if the parameters have changed since the last |
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689 // execution of Orthanc |
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690 StandaloneRecycling(); |
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691 |
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IDatabaseWrapper::HasFlushToDisk()
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692 if (db.HasFlushToDisk()) |
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IDatabaseWrapper::HasFlushToDisk()
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693 { |
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694 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
1306
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IDatabaseWrapper::HasFlushToDisk()
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695 } |
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IDatabaseWrapper::HasFlushToDisk()
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696 |
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697 unstableResourcesMonitorThread_ = boost::thread |
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698 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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699 } |
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700 |
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701 |
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702 |
206
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703 ServerIndex::~ServerIndex() |
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704 { |
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705 if (!done_) |
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706 { |
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707 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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708 Stop(); |
511
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709 } |
0 | 710 } |
711 | |
712 | |
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713 |
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714 void ServerIndex::Stop() |
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715 { |
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716 if (!done_) |
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717 { |
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718 done_ = true; |
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719 |
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720 if (db_.HasFlushToDisk() && |
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721 flushThread_.joinable()) |
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722 { |
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723 flushThread_.join(); |
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724 } |
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725 |
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726 if (unstableResourcesMonitorThread_.joinable()) |
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727 { |
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728 unstableResourcesMonitorThread_.join(); |
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|
729 } |
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|
730 } |
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731 } |
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|
732 |
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733 |
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734 static void SetInstanceMetadata(ResourcesContent& content, |
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735 std::map<MetadataType, std::string>& instanceMetadata, |
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736 int64_t instance, |
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737 MetadataType metadata, |
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|
738 const std::string& value) |
2188 | 739 { |
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740 content.AddMetadata(instance, metadata, value); |
2188 | 741 instanceMetadata[metadata] = value; |
742 } | |
743 | |
744 | |
3080
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started refactoring of ServerIndex::Store()
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745 void ServerIndex::SignalNewResource(ChangeType changeType, |
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started refactoring of ServerIndex::Store()
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746 ResourceType level, |
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|
747 const std::string& publicId, |
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748 int64_t internalId) |
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|
749 { |
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started refactoring of ServerIndex::Store()
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|
750 ServerIndexChange change(changeType, level, publicId); |
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changeset
|
751 db_.LogChange(internalId, change); |
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|
752 |
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|
753 assert(listener_.get() != NULL); |
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started refactoring of ServerIndex::Store()
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|
754 listener_->SignalChange(change); |
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changeset
|
755 } |
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|
756 |
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changeset
|
757 |
1006
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changeset
|
758 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 759 DicomInstanceToStore& instanceToStore, |
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|
760 const Attachments& attachments, |
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761 bool overwrite) |
0 | 762 { |
206
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763 boost::mutex::scoped_lock lock(mutex_); |
0 | 764 |
1822 | 765 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
766 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
767 | |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
768 int64_t expectedInstances; |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
769 const bool hasExpectedInstances = |
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starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
770 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
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starting optimization of SeriesIndex::GetSeriesStatus()
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|
771 |
1006
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|
772 instanceMetadata.clear(); |
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|
773 |
3080
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|
774 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
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775 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
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|
776 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
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|
777 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
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778 |
0 | 779 try |
780 { | |
278
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|
781 Transaction t(*this); |
0 | 782 |
3080
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783 IDatabaseWrapper::CreateInstanceResult status; |
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|
784 int64_t instanceId; |
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|
785 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
786 // Check whether this instance is already stored |
3080
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787 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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788 hashStudy, hashSeries, hashInstance)) |
0 | 789 { |
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790 // The instance already exists |
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|
791 |
3813
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|
792 if (overwrite) |
3082
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|
793 { |
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|
794 // Overwrite the old instance |
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|
795 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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796 db_.DeleteResource(instanceId); |
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|
797 |
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changeset
|
798 // Re-create the instance, now that the old one is removed |
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|
799 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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800 hashStudy, hashSeries, hashInstance)) |
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|
801 { |
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|
802 throw OrthancException(ErrorCode_InternalError); |
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|
803 } |
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|
804 } |
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|
805 else |
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|
806 { |
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|
807 // Do nothing if the instance already exists and overwriting is disabled |
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|
808 db_.GetAllMetadata(instanceMetadata, instanceId); |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 return StoreStatus_AlreadyStored; |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
810 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
811 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
812 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
813 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
814 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
815 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
816 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
817 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
818 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
819 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
820 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
821 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
822 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
823 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
824 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
825 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
826 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 827 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
828 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
829 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
830 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
831 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
832 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
833 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
834 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
835 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
836 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
837 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
838 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
839 |
268
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
840 // Ensure there is enough room in the storage for the new instance |
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
841 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
842 for (Attachments::const_iterator it = attachments.begin(); |
656 | 843 it != attachments.end(); ++it) |
268
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
844 { |
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preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
845 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
846 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
847 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
848 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
849 |
74e3e48aa9bd
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parents:
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diff
changeset
|
850 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
851 // Attach the files to the newly created instance |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
852 for (Attachments::const_iterator it = attachments.begin(); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
853 it != attachments.end(); ++it) |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
854 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
855 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
856 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
857 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
858 |
0 | 859 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
860 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
861 |
3086
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grouping the setting of metadata
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parents:
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diff
changeset
|
862 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
863 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
864 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
865 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
866 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
867 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
868 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
869 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
870 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
871 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
872 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
873 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
874 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
875 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
876 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
877 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
878 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
879 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
880 |
3086
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
881 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
882 // Attach the user-specified metadata |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
883 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
884 for (MetadataMap::const_iterator |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
885 it = metadata.begin(); it != metadata.end(); ++it) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
886 { |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
887 switch (it->first.first) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
888 { |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
889 case ResourceType_Patient: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
890 content.AddMetadata(status.patientId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
891 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
892 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
893 case ResourceType_Study: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
894 content.AddMetadata(status.studyId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
895 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
896 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
897 case ResourceType_Series: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
898 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
899 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
900 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
901 case ResourceType_Instance: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
902 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
903 it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
904 break; |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
905 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
906 default: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
907 throw OrthancException(ErrorCode_ParameterOutOfRange); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
908 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
909 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
910 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
911 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
912 // Attach the auto-computed metadata for the patient/study/series levels |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
913 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
914 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
915 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
916 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
917 |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
918 if (status.isNewSeries_) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
3087
diff
changeset
|
919 { |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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4437
diff
changeset
|
920 if (hasExpectedInstances) |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
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diff
changeset
|
921 { |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
922 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
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parents:
4437
diff
changeset
|
923 boost::lexical_cast<std::string>(expectedInstances)); |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
924 } |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
925 |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
926 // New in Orthanc 1.9.0 |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
927 content.AddMetadata(status.seriesId_, MetadataType_RemoteAet, |
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
928 instanceToStore.GetOrigin().GetRemoteAetC()); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
929 } |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
930 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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3087
diff
changeset
|
931 |
3086
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parents:
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diff
changeset
|
932 // Attach the auto-computed metadata for the instance level, |
74e3e48aa9bd
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parents:
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diff
changeset
|
933 // reflecting these additions into the input metadata map |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
934 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
935 MetadataType_Instance_ReceptionDate, now); |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
936 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_RemoteAet, |
3086
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|
937 instanceToStore.GetOrigin().GetRemoteAetC()); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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|
938 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
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|
939 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
74e3e48aa9bd
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parents:
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diff
changeset
|
940 |
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diff
changeset
|
941 |
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changeset
|
942 { |
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|
943 std::string s; |
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|
944 |
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|
945 if (instanceToStore.LookupTransferSyntax(s)) |
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grouping the setting of metadata
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diff
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|
946 { |
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changeset
|
947 // New in Orthanc 1.2.0 |
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diff
changeset
|
948 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
949 MetadataType_Instance_TransferSyntax, s); |
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parents:
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diff
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|
950 } |
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diff
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|
951 |
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|
952 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
74e3e48aa9bd
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|
953 { |
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diff
changeset
|
954 // New in Orthanc 1.4.0 |
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changeset
|
955 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
3083
diff
changeset
|
956 MetadataType_Instance_RemoteIp, s); |
74e3e48aa9bd
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diff
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|
957 } |
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diff
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|
958 |
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parents:
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changeset
|
959 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
960 { |
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parents:
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diff
changeset
|
961 // New in Orthanc 1.4.0 |
74e3e48aa9bd
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parents:
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diff
changeset
|
962 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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|
963 MetadataType_Instance_CalledAet, s); |
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|
964 } |
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|
965 |
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diff
changeset
|
966 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
74e3e48aa9bd
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parents:
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|
967 { |
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diff
changeset
|
968 // New in Orthanc 1.4.0 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
969 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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|
970 MetadataType_Instance_HttpUsername, s); |
74e3e48aa9bd
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parents:
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diff
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|
971 } |
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diff
changeset
|
972 } |
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|
973 |
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|
974 |
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|
975 const DicomValue* value; |
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parents:
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|
976 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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parents:
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diff
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|
977 !value->IsNull() && |
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parents:
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|
978 !value->IsBinary()) |
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|
979 { |
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|
980 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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changeset
|
981 MetadataType_Instance_SopClassUid, value->GetContent()); |
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parents:
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diff
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|
982 } |
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changeset
|
983 |
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diff
changeset
|
984 |
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parents:
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diff
changeset
|
985 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
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diff
changeset
|
986 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
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parents:
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|
987 { |
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parents:
3083
diff
changeset
|
988 if (!value->IsNull() && |
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grouping the setting of metadata
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|
989 !value->IsBinary()) |
74e3e48aa9bd
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diff
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|
990 { |
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parents:
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diff
changeset
|
991 SetInstanceMetadata(content, instanceMetadata, instanceId, |
4263
61a2bedbae80
sanitize IndexInSeries (we've seen spaces there !)
Alain Mazy <alain@mazy.be>
parents:
4205
diff
changeset
|
992 MetadataType_Instance_IndexInSeries, Toolbox::StripSpaces(value->GetContent())); |
3086
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parents:
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|
993 } |
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changeset
|
994 } |
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diff
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|
995 |
74e3e48aa9bd
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diff
changeset
|
996 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
997 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
998 } |
3086
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changeset
|
999 |
3090
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starting optimization of SeriesIndex::GetSeriesStatus()
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|
1000 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
1001 // Check whether the series of this new instance is now completed |
3187
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|
1002 int64_t expectedNumberOfInstances; |
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diff
changeset
|
1003 if (ComputeExpectedNumberOfInstances(expectedNumberOfInstances, dicomSummary)) |
205
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diff
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|
1004 { |
3187
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|
1005 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_, expectedNumberOfInstances); |
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|
1006 if (seriesStatus == SeriesStatus_Complete) |
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diff
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|
1007 { |
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diff
changeset
|
1008 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
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|
1009 } |
205
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|
1010 } |
3087 | 1011 |
205
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logging of completed series
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|
1012 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
1013 // Mark the parent resources of this instance as unstable |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1014 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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changeset
|
1015 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
1016 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
3b735fdf320b
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|
1017 |
278
771f12042be9
more efficient determination of storage size for recycling
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diff
changeset
|
1018 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
1019 |
0 | 1020 return StoreStatus_Success; |
1021 } | |
62 | 1022 catch (OrthancException& e) |
0 | 1023 { |
1247 | 1024 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 1025 } |
1026 | |
1027 return StoreStatus_Failure; | |
1028 } | |
1029 | |
1030 | |
3174
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primitives to collect metrics in Orthanc
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diff
changeset
|
1031 void ServerIndex::GetGlobalStatistics(/* out */ uint64_t& diskSize, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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|
1032 /* out */ uint64_t& uncompressedSize, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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parents:
3105
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changeset
|
1033 /* out */ uint64_t& countPatients, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
1034 /* out */ uint64_t& countStudies, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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3105
diff
changeset
|
1035 /* out */ uint64_t& countSeries, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1036 /* out */ uint64_t& countInstances) |
0 | 1037 { |
206
4453a010d0db
flush to disk thread
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205
diff
changeset
|
1038 boost::mutex::scoped_lock lock(mutex_); |
3174
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primitives to collect metrics in Orthanc
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|
1039 diskSize = db_.GetTotalCompressedSize(); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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parents:
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changeset
|
1040 uncompressedSize = db_.GetTotalUncompressedSize(); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1041 countPatients = db_.GetResourceCount(ResourceType_Patient); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1042 countStudies = db_.GetResourceCount(ResourceType_Study); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1043 countSeries = db_.GetResourceCount(ResourceType_Series); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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changeset
|
1044 countInstances = db_.GetResourceCount(ResourceType_Instance); |
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|
1045 } |
187
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refactoring of storing new instances
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diff
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|
1046 |
3090
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changeset
|
1047 |
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starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
1048 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id, |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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changeset
|
1049 int64_t expectedNumberOfInstances) |
199 | 1050 { |
3091
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1051 std::list<std::string> values; |
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1052 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries); |
199 | 1053 |
1238 | 1054 std::set<int64_t> instances; |
3091
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1055 |
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1056 for (std::list<std::string>::const_iterator |
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1057 it = values.begin(); it != values.end(); ++it) |
199 | 1058 { |
1238 | 1059 int64_t index; |
3091
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1060 |
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1061 try |
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1062 { |
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1063 index = boost::lexical_cast<int64_t>(*it); |
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1064 } |
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1065 catch (boost::bad_lexical_cast&) |
199 | 1066 { |
1067 return SeriesStatus_Unknown; | |
1068 } | |
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1069 |
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1070 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1071 { |
1072 // Out-of-range instance index | |
1073 return SeriesStatus_Inconsistent; | |
1074 } | |
1075 | |
1076 if (instances.find(index) != instances.end()) | |
1077 { | |
1078 // Twice the same instance index | |
1079 return SeriesStatus_Inconsistent; | |
1080 } | |
1081 | |
1082 instances.insert(index); | |
1083 } | |
1084 | |
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1085 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1086 { |
1087 return SeriesStatus_Complete; | |
1088 } | |
1089 else | |
1090 { | |
1091 return SeriesStatus_Missing; | |
1092 } | |
1093 } | |
1094 | |
1095 | |
202 | 1096 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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1097 int64_t resourceId, |
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1098 ResourceType resourceType) |
198
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1099 { |
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1100 DicomMap tags; |
1247 | 1101 db_.GetMainDicomTags(tags, resourceId); |
1676
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1102 |
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1103 if (resourceType == ResourceType_Study) |
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1104 { |
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1105 DicomMap t1, t2; |
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1106 tags.ExtractStudyInformation(t1); |
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1107 tags.ExtractPatientInformation(t2); |
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1108 |
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1109 target["MainDicomTags"] = Json::objectValue; |
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1110 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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1111 |
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1112 target["PatientMainDicomTags"] = Json::objectValue; |
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1113 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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1114 } |
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1115 else |
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1116 { |
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1117 target["MainDicomTags"] = Json::objectValue; |
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1118 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1119 } |
198
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1120 } |
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1121 |
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1122 |
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1123 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1124 const std::string& publicId, |
1125 ResourceType expectedType) | |
198
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1126 { |
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1127 result = Json::objectValue; |
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1128 |
206
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1129 boost::mutex::scoped_lock lock(mutex_); |
199 | 1130 |
198
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1131 // Lookup for the requested resource |
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1132 int64_t id; |
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1133 ResourceType type; |
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|
1134 std::string parent; |
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|
1135 if (!db_.LookupResourceAndParent(id, type, parent, publicId) || |
199 | 1136 type != expectedType) |
198
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1137 { |
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1138 return false; |
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1139 } |
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1140 |
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1141 // Set information about the parent resource (if it exists) |
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1142 if (type == ResourceType_Patient) |
198
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1143 { |
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1144 if (!parent.empty()) |
198
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1145 { |
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|
1146 throw OrthancException(ErrorCode_DatabasePlugin); |
198
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1147 } |
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1148 } |
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1149 else |
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1150 { |
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1151 if (parent.empty()) |
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1152 { |
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|
1153 throw OrthancException(ErrorCode_DatabasePlugin); |
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1154 } |
198
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1155 |
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1156 switch (type) |
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1157 { |
269
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1158 case ResourceType_Study: |
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1159 result["ParentPatient"] = parent; |
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1160 break; |
198
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1161 |
269
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1162 case ResourceType_Series: |
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1163 result["ParentStudy"] = parent; |
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1164 break; |
198
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1165 |
269
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1166 case ResourceType_Instance: |
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1167 result["ParentSeries"] = parent; |
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1168 break; |
198
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1169 |
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1170 default: |
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1171 throw OrthancException(ErrorCode_InternalError); |
198
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1172 } |
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1173 } |
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1174 |
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1175 // List the children resources |
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1176 std::list<std::string> children; |
1247 | 1177 db_.GetChildrenPublicId(children, id); |
198
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1178 |
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1179 if (type != ResourceType_Instance) |
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1180 { |
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1181 Json::Value c = Json::arrayValue; |
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1182 |
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1183 for (std::list<std::string>::const_iterator |
656 | 1184 it = children.begin(); it != children.end(); ++it) |
198
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1185 { |
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1186 c.append(*it); |
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1187 } |
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1188 |
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1189 switch (type) |
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1190 { |
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1191 case ResourceType_Patient: |
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1192 result["Studies"] = c; |
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1193 break; |
198
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1194 |
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1195 case ResourceType_Study: |
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1196 result["Series"] = c; |
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1197 break; |
198
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1198 |
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changeset
|
1199 case ResourceType_Series: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1200 result["Instances"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1201 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1202 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1203 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1204 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1205 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1206 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1207 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1208 // Extract the metadata |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1209 std::map<MetadataType, std::string> metadata; |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1210 db_.GetAllMetadata(metadata, id); |
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1211 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1212 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1213 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1214 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1215 case ResourceType_Patient: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1216 result["Type"] = "Patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1217 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1218 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1219 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1220 result["Type"] = "Study"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1221 break; |
199 | 1222 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1223 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1224 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1225 result["Type"] = "Series"; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1226 |
1238 | 1227 int64_t i; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1228 if (LookupIntegerMetadata(i, metadata, MetadataType_Series_ExpectedNumberOfInstances)) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1229 { |
1238 | 1230 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1231 result["Status"] = EnumerationToString(GetSeriesStatus(id, i)); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1232 } |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1233 else |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1234 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1235 result["ExpectedNumberOfInstances"] = Json::nullValue; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1236 result["Status"] = EnumerationToString(SeriesStatus_Unknown); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1237 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1238 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1239 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1240 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1241 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1242 case ResourceType_Instance: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1243 { |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1244 result["Type"] = "Instance"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1245 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1246 FileInfo attachment; |
1247 | 1247 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1248 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1249 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1250 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1251 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1252 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1253 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1254 |
1238 | 1255 int64_t i; |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1256 if (LookupIntegerMetadata(i, metadata, MetadataType_Instance_IndexInSeries)) |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1257 { |
1238 | 1258 result["IndexInSeries"] = static_cast<int>(i); |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1259 } |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1260 else |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1261 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1262 result["IndexInSeries"] = Json::nullValue; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1263 } |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1264 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1265 break; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1266 } |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1267 |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1268 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1269 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1270 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1271 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1272 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1273 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1274 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1275 |
315 | 1276 std::string tmp; |
1277 | |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1278 if (LookupStringMetadata(tmp, metadata, MetadataType_AnonymizedFrom)) |
1236 | 1279 { |
315 | 1280 result["AnonymizedFrom"] = tmp; |
1236 | 1281 } |
315 | 1282 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1283 if (LookupStringMetadata(tmp, metadata, MetadataType_ModifiedFrom)) |
1236 | 1284 { |
315 | 1285 result["ModifiedFrom"] = tmp; |
1236 | 1286 } |
315 | 1287 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1288 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1289 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1290 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1291 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1292 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1293 |
3187
4bbadcd03966
refactoring retrieval of metadata from database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1294 if (LookupStringMetadata(tmp, metadata, MetadataType_LastUpdate)) |
1236 | 1295 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1296 result["LastUpdate"] = tmp; |
1236 | 1297 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1298 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1299 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1300 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1301 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1302 |
0 | 1303 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1304 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1305 const std::string& instanceUuid, |
233 | 1306 FileContentType contentType) |
0 | 1307 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1308 boost::mutex::scoped_lock lock(mutex_); |
0 | 1309 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1310 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1311 ResourceType type; |
1294 | 1312 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1313 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1314 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1315 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1316 |
1247 | 1317 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1318 { |
233 | 1319 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1320 return true; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1321 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1322 else |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1323 { |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1324 return false; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1325 } |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1326 } |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1327 |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1328 |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1329 |
1354 | 1330 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1331 ResourceType resourceType) |
0 | 1332 { |
1357 | 1333 boost::mutex::scoped_lock lock(mutex_); |
1334 db_.GetAllPublicIds(target, resourceType); | |
0 | 1335 } |
1336 | |
1337 | |
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1338 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1339 ResourceType resourceType, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1340 size_t since, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1341 size_t limit) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1342 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
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|
1343 if (limit == 0) |
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limit and since arguments while retrieving DICOM resources in the REST API
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|
1344 { |
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diff
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|
1345 target.clear(); |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
1346 return; |
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limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1347 } |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1348 |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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|
1349 boost::mutex::scoped_lock lock(mutex_); |
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|
1350 db_.GetAllPublicIds(target, resourceType, since, limit); |
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|
1351 } |
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1352 |
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|
1353 |
1244 | 1354 template <typename T> |
1355 static void FormatLog(Json::Value& target, | |
1356 const std::list<T>& log, | |
1357 const std::string& name, | |
1358 bool done, | |
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|
1359 int64_t since, |
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|
1360 bool hasLast, |
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|
1361 int64_t last) |
1240 | 1362 { |
1363 Json::Value items = Json::arrayValue; | |
1244 | 1364 for (typename std::list<T>::const_iterator |
1304 | 1365 it = log.begin(); it != log.end(); ++it) |
1240 | 1366 { |
1367 Json::Value item; | |
1368 it->Format(item); | |
1369 items.append(item); | |
1370 } | |
1371 | |
1372 target = Json::objectValue; | |
1244 | 1373 target[name] = items; |
1240 | 1374 target["Done"] = done; |
1375 | |
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1376 if (!hasLast) |
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|
1377 { |
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1378 // Best-effort guess of the last index in the sequence |
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1379 if (log.empty()) |
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1380 { |
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1381 last = since; |
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1382 } |
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1383 else |
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1384 { |
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1385 last = log.back().GetSeq(); |
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1386 } |
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1387 } |
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|
1388 |
1240 | 1389 target["Last"] = static_cast<int>(last); |
1390 } | |
1391 | |
1392 | |
1247 | 1393 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1394 int64_t since, |
0 | 1395 unsigned int maxResults) |
1396 { | |
1240 | 1397 std::list<ServerIndexChange> changes; |
1398 bool done; | |
3105
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|
1399 bool hasLast = false; |
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1400 int64_t last = 0; |
1240 | 1401 |
1402 { | |
1403 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1404 |
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1405 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1406 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1407 Transaction transaction(*this); |
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1408 |
1247 | 1409 db_.GetChanges(changes, done, since, maxResults); |
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1410 if (changes.empty()) |
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1411 { |
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1412 last = db_.GetLastChangeIndex(); |
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1413 hasLast = true; |
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1414 } |
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1415 |
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1416 transaction.Commit(0); |
1240 | 1417 } |
1418 | |
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1419 FormatLog(target, changes, "Changes", done, since, hasLast, last); |
237
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1420 } |
0 | 1421 |
1240 | 1422 |
1247 | 1423 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1424 { |
1240 | 1425 std::list<ServerIndexChange> changes; |
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1426 bool hasLast = false; |
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1427 int64_t last = 0; |
1240 | 1428 |
1429 { | |
1430 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1431 |
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1432 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1433 // "GetLastChange()" involves calls to "GetPublicId()" |
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1434 Transaction transaction(*this); |
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1435 |
1247 | 1436 db_.GetLastChange(changes); |
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1437 if (changes.empty()) |
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1438 { |
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1439 last = db_.GetLastChangeIndex(); |
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1440 hasLast = true; |
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1441 } |
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1442 |
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1443 transaction.Commit(0); |
1240 | 1444 } |
1445 | |
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|
1446 FormatLog(target, changes, "Changes", true, 0, hasLast, last); |
0 | 1447 } |
231 | 1448 |
1240 | 1449 |
231 | 1450 void ServerIndex::LogExportedResource(const std::string& publicId, |
1451 const std::string& remoteModality) | |
1452 { | |
1453 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1454 Transaction transaction(*this); |
231 | 1455 |
1456 int64_t id; | |
1457 ResourceType type; | |
1294 | 1458 if (!db_.LookupResource(id, type, publicId)) |
231 | 1459 { |
2573
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1460 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1461 } |
1462 | |
1463 std::string patientId; | |
1464 std::string studyInstanceUid; | |
1465 std::string seriesInstanceUid; | |
1466 std::string sopInstanceUid; | |
1467 | |
1468 int64_t currentId = id; | |
1469 ResourceType currentType = type; | |
1470 | |
1471 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1472 bool done = false; | |
1473 while (!done) | |
1474 { | |
1475 DicomMap map; | |
1247 | 1476 db_.GetMainDicomTags(map, currentId); |
231 | 1477 |
1478 switch (currentType) | |
1479 { | |
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1480 case ResourceType_Patient: |
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1481 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1482 { |
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1483 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1484 } |
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1485 done = true; |
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1486 break; |
231 | 1487 |
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1488 case ResourceType_Study: |
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1489 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1490 { |
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1491 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1492 } |
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1493 currentType = ResourceType_Patient; |
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1494 break; |
231 | 1495 |
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1496 case ResourceType_Series: |
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1497 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1498 { |
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1499 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1500 } |
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1501 currentType = ResourceType_Study; |
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1502 break; |
231 | 1503 |
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1504 case ResourceType_Instance: |
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1505 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1506 { |
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1507 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1508 } |
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1509 currentType = ResourceType_Series; |
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1510 break; |
231 | 1511 |
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1512 default: |
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1513 throw OrthancException(ErrorCode_InternalError); |
231 | 1514 } |
1515 | |
1516 // If we have not reached the Patient level, find the parent of | |
1517 // the current resource | |
1518 if (!done) | |
1519 { | |
1247 | 1520 bool ok = db_.LookupParent(currentId, currentId); |
4121 | 1521 (void) ok; // Remove warning about unused variable in release builds |
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1522 assert(ok); |
231 | 1523 } |
1524 } | |
1525 | |
1246 | 1526 ExportedResource resource(-1, |
1527 type, | |
1528 publicId, | |
1529 remoteModality, | |
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|
1530 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1531 patientId, |
1532 studyInstanceUid, | |
1533 seriesInstanceUid, | |
1534 sopInstanceUid); | |
1310
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1535 |
1247 | 1536 db_.LogExportedResource(resource); |
1310
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1537 transaction.Commit(0); |
231 | 1538 } |
1539 | |
1540 | |
1247 | 1541 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1542 int64_t since, |
1543 unsigned int maxResults) | |
1544 { | |
1244 | 1545 std::list<ExportedResource> exported; |
1546 bool done; | |
1547 | |
1548 { | |
1549 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1550 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1551 } |
1552 | |
3105
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1553 FormatLog(target, exported, "Exports", done, since, false, -1); |
231 | 1554 } |
237
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1555 |
1244 | 1556 |
1247 | 1557 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1558 { |
1244 | 1559 std::list<ExportedResource> exported; |
1560 | |
1561 { | |
1562 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1563 db_.GetLastExportedResource(exported); |
1244 | 1564 } |
1565 | |
3105
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1566 FormatLog(target, exported, "Exports", true, 0, false, -1); |
237
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1567 } |
268
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1568 |
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1569 |
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1570 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1571 { |
269
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1572 if (maximumStorageSize_ != 0) |
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1573 { |
3020
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|
1574 assert(maximumStorageSize_ >= instanceSize); |
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1575 |
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1576 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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1577 { |
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1578 return true; |
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1579 } |
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1580 } |
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1581 |
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1582 if (maximumPatients_ != 0) |
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1583 { |
1247 | 1584 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1585 if (patientCount > maximumPatients_) |
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1586 { |
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1587 return true; |
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1588 } |
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1589 } |
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1590 |
268
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1591 return false; |
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1592 } |
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1593 |
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1594 |
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1595 void ServerIndex::Recycle(uint64_t instanceSize, |
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1596 const std::string& newPatientId) |
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1597 { |
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1598 if (!IsRecyclingNeeded(instanceSize)) |
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1599 { |
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1600 return; |
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1601 } |
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1602 |
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1603 // Check whether other DICOM instances from this patient are |
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1604 // already stored |
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1605 int64_t patientToAvoid; |
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1606 ResourceType type; |
1294 | 1607 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1608 |
269
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1609 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1610 { |
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1611 throw OrthancException(ErrorCode_InternalError); |
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1612 } |
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1613 |
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1614 // Iteratively select patient to remove until there is enough |
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1615 // space in the DICOM store |
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1616 int64_t patientToRecycle; |
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1617 while (true) |
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1618 { |
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1619 // If other instances of this patient are already in the store, |
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1620 // we must avoid to recycle them |
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|
1621 bool ok = hasPatientToAvoid ? |
1247 | 1622 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1623 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1624 |
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1625 if (!ok) |
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1626 { |
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1627 throw OrthancException(ErrorCode_FullStorage); |
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1628 } |
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1629 |
4268
0ae2ca210077
new macro TLOG() to replace VLOG() for trace logs with a category
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1630 LOG(TRACE) << "Recycling one patient"; |
1247 | 1631 db_.DeleteResource(patientToRecycle); |
269
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1632 |
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1633 if (!IsRecyclingNeeded(instanceSize)) |
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1634 { |
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1635 // OK, we're done |
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1636 break; |
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1637 } |
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1638 } |
268
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1639 } |
269
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1640 |
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1641 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1642 { |
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1643 boost::mutex::scoped_lock lock(mutex_); |
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1644 maximumPatients_ = count; |
270
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1645 |
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1646 if (count == 0) |
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1647 { |
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1648 LOG(WARNING) << "No limit on the number of stored patients"; |
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1649 } |
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1650 else |
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1651 { |
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1652 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1653 } |
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1654 |
269
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1655 StandaloneRecycling(); |
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1656 } |
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1657 |
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1658 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1659 { |
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1660 boost::mutex::scoped_lock lock(mutex_); |
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1661 maximumStorageSize_ = size; |
270
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1662 |
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1663 if (size == 0) |
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1664 { |
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1665 LOG(WARNING) << "No limit on the size of the storage area"; |
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1666 } |
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1667 else |
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1668 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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diff
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|
1669 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1670 } |
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1671 |
269
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|
1672 StandaloneRecycling(); |
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1673 } |
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1674 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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1675 |
272
337c506461d2
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|
1676 void ServerIndex::StandaloneRecycling() |
269
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1677 { |
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1678 // WARNING: No mutex here, do not include this as a public method |
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|
1679 Transaction t(*this); |
269
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1680 Recycle(0, ""); |
278
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|
1681 t.Commit(0); |
269
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1682 } |
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1683 |
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1684 |
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1685 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1686 { |
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1687 boost::mutex::scoped_lock lock(mutex_); |
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1688 |
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1689 // Lookup for the requested resource |
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1690 int64_t id; |
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1691 ResourceType type; |
1294 | 1692 if (!db_.LookupResource(id, type, publicId) || |
272
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1693 type != ResourceType_Patient) |
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1694 { |
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1695 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1696 } |
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1697 |
1247 | 1698 return db_.IsProtectedPatient(id); |
272
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1699 } |
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1700 |
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1701 |
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1702 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1703 bool isProtected) |
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1704 { |
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1705 boost::mutex::scoped_lock lock(mutex_); |
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1706 Transaction transaction(*this); |
272
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1707 |
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1708 // Lookup for the requested resource |
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1709 int64_t id; |
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1710 ResourceType type; |
1294 | 1711 if (!db_.LookupResource(id, type, publicId) || |
272
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1712 type != ResourceType_Patient) |
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1713 { |
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1714 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1715 } |
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1716 |
1247 | 1717 db_.SetProtectedPatient(id, isProtected); |
1310
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1718 transaction.Commit(0); |
272
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1719 |
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1720 if (isProtected) |
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1721 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1722 else |
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1723 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1724 } |
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1725 |
304 | 1726 |
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1727 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1728 const std::string& publicId) |
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1729 { |
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1730 result.clear(); |
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1731 |
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1732 boost::mutex::scoped_lock lock(mutex_); |
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1733 |
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1734 ResourceType type; |
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1735 int64_t resource; |
1294 | 1736 if (!db_.LookupResource(resource, type, publicId)) |
714
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1737 { |
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1738 throw OrthancException(ErrorCode_UnknownResource); |
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1739 } |
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1740 |
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1741 if (type == ResourceType_Instance) |
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1742 { |
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1743 // An instance cannot have a child |
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1744 throw OrthancException(ErrorCode_BadParameterType); |
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1745 } |
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1746 |
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1747 std::list<int64_t> tmp; |
1247 | 1748 db_.GetChildrenInternalId(tmp, resource); |
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1749 |
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1750 for (std::list<int64_t>::const_iterator |
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1751 it = tmp.begin(); it != tmp.end(); ++it) |
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1752 { |
1247 | 1753 result.push_back(db_.GetPublicId(*it)); |
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1754 } |
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1755 } |
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1756 |
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1757 |
304 | 1758 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1759 const std::string& publicId) | |
1760 { | |
1761 result.clear(); | |
1762 | |
1763 boost::mutex::scoped_lock lock(mutex_); | |
1764 | |
1765 ResourceType type; | |
1766 int64_t top; | |
1294 | 1767 if (!db_.LookupResource(top, type, publicId)) |
304 | 1768 { |
1769 throw OrthancException(ErrorCode_UnknownResource); | |
1770 } | |
1771 | |
1772 if (type == ResourceType_Instance) | |
1773 { | |
1774 // The resource is already an instance: Do not go down the hierarchy | |
1775 result.push_back(publicId); | |
1776 return; | |
1777 } | |
1778 | |
1779 std::stack<int64_t> toExplore; | |
1780 toExplore.push(top); | |
1781 | |
1782 std::list<int64_t> tmp; | |
1783 | |
1784 while (!toExplore.empty()) | |
1785 { | |
1786 // Get the internal ID of the current resource | |
1787 int64_t resource = toExplore.top(); | |
1788 toExplore.pop(); | |
1789 | |
1247 | 1790 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1791 { |
1247 | 1792 result.push_back(db_.GetPublicId(resource)); |
304 | 1793 } |
1794 else | |
1795 { | |
1796 // Tag all the children of this resource as to be explored | |
1247 | 1797 db_.GetChildrenInternalId(tmp, resource); |
304 | 1798 for (std::list<int64_t>::const_iterator |
656 | 1799 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1800 { |
1801 toExplore.push(*it); | |
1802 } | |
1803 } | |
1804 } | |
1805 } | |
1806 | |
306
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1807 |
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1808 void ServerIndex::SetMetadata(const std::string& publicId, |
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1809 MetadataType type, |
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1810 const std::string& value) |
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1811 { |
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1812 boost::mutex::scoped_lock lock(mutex_); |
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1813 Transaction t(*this); |
306
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1814 |
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1815 ResourceType rtype; |
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1816 int64_t id; |
1294 | 1817 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1818 { |
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1819 throw OrthancException(ErrorCode_UnknownResource); |
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1820 } |
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1821 |
1247 | 1822 db_.SetMetadata(id, type, value); |
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1823 |
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1824 if (IsUserMetadata(type)) |
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1825 { |
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1826 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1827 } |
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1828 |
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1829 t.Commit(0); |
306
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1830 } |
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1831 |
438 | 1832 |
1833 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1834 MetadataType type) | |
1835 { | |
1836 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1837 Transaction t(*this); |
438 | 1838 |
1839 ResourceType rtype; | |
1840 int64_t id; | |
1294 | 1841 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1842 { |
1843 throw OrthancException(ErrorCode_UnknownResource); | |
1844 } | |
1845 | |
1247 | 1846 db_.DeleteMetadata(id, type); |
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1847 |
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1848 if (IsUserMetadata(type)) |
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1849 { |
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1850 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1851 } |
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1852 |
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1853 t.Commit(0); |
438 | 1854 } |
1855 | |
1856 | |
306
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1857 bool ServerIndex::LookupMetadata(std::string& target, |
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1858 const std::string& publicId, |
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1859 ResourceType expectedType, |
306
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1860 MetadataType type) |
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1861 { |
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1862 boost::mutex::scoped_lock lock(mutex_); |
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1863 |
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1864 ResourceType rtype; |
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1865 int64_t id; |
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1866 if (!db_.LookupResource(id, rtype, publicId) || |
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1867 rtype != expectedType) |
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1868 { |
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1869 throw OrthancException(ErrorCode_UnknownResource); |
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1870 } |
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1871 |
1247 | 1872 return db_.LookupMetadata(target, id, type); |
306
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1873 } |
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1874 |
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1875 |
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1876 void ServerIndex::GetAllMetadata(std::map<MetadataType, std::string>& target, |
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1877 const std::string& publicId, |
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1878 ResourceType expectedType) |
436
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1879 { |
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1880 boost::mutex::scoped_lock lock(mutex_); |
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1881 |
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1882 ResourceType type; |
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1883 int64_t id; |
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1884 if (!db_.LookupResource(id, type, publicId) || |
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1885 expectedType != type) |
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1886 { |
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1887 throw OrthancException(ErrorCode_UnknownResource); |
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1888 } |
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1889 |
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1890 return db_.GetAllMetadata(target, id); |
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1891 } |
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1892 |
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1893 |
697
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1894 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1895 const std::string& publicId, |
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1896 ResourceType expectedType) |
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1897 { |
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1898 boost::mutex::scoped_lock lock(mutex_); |
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1899 |
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1900 ResourceType type; |
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1901 int64_t id; |
1294 | 1902 if (!db_.LookupResource(id, type, publicId) || |
697
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1903 expectedType != type) |
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1904 { |
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1905 throw OrthancException(ErrorCode_UnknownResource); |
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1906 } |
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1907 |
1247 | 1908 db_.ListAvailableAttachments(target, id); |
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1909 } |
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1910 |
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1911 |
306
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1912 bool ServerIndex::LookupParent(std::string& target, |
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1913 const std::string& publicId) |
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1914 { |
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1915 boost::mutex::scoped_lock lock(mutex_); |
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1916 |
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1917 ResourceType type; |
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1918 int64_t id; |
1294 | 1919 if (!db_.LookupResource(id, type, publicId)) |
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1920 { |
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1921 throw OrthancException(ErrorCode_UnknownResource); |
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1922 } |
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1923 |
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1924 int64_t parentId; |
1247 | 1925 if (db_.LookupParent(parentId, id)) |
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1926 { |
1247 | 1927 target = db_.GetPublicId(parentId); |
306
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1928 return true; |
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1929 } |
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1930 else |
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1931 { |
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1932 return false; |
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1933 } |
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1934 } |
310 | 1935 |
1936 | |
1937 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1938 { | |
1939 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1940 Transaction transaction(*this); |
311 | 1941 |
1237 | 1942 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1943 transaction.Commit(0); |
311 | 1944 |
1945 return seq; | |
310 | 1946 } |
315 | 1947 |
1948 | |
1949 | |
1950 void ServerIndex::LogChange(ChangeType changeType, | |
1951 const std::string& publicId) | |
1952 { | |
1953 boost::mutex::scoped_lock lock(mutex_); | |
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1954 Transaction transaction(*this); |
315 | 1955 |
1956 int64_t id; | |
1957 ResourceType type; | |
1294 | 1958 if (!db_.LookupResource(id, type, publicId)) |
315 | 1959 { |
1960 throw OrthancException(ErrorCode_UnknownResource); | |
1961 } | |
1962 | |
1237 | 1963 LogChange(id, changeType, type, publicId); |
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1964 transaction.Commit(0); |
315 | 1965 } |
413
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1966 |
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1967 |
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1968 void ServerIndex::DeleteChanges() |
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1969 { |
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1970 boost::mutex::scoped_lock lock(mutex_); |
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1971 |
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1972 Transaction transaction(*this); |
1286 | 1973 db_.ClearChanges(); |
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1974 transaction.Commit(0); |
413
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1975 } |
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1976 |
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1977 void ServerIndex::DeleteExportedResources() |
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1978 { |
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1979 boost::mutex::scoped_lock lock(mutex_); |
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1980 |
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1981 Transaction transaction(*this); |
1286 | 1982 db_.ClearExportedResources(); |
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1983 transaction.Commit(0); |
413
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1984 } |
440
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1985 |
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1986 |
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1987 void ServerIndex::GetResourceStatistics(/* out */ ResourceType& type, |
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1988 /* out */ uint64_t& diskSize, |
646 | 1989 /* out */ uint64_t& uncompressedSize, |
1990 /* out */ unsigned int& countStudies, | |
1991 /* out */ unsigned int& countSeries, | |
1992 /* out */ unsigned int& countInstances, | |
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1993 /* out */ uint64_t& dicomDiskSize, |
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1994 /* out */ uint64_t& dicomUncompressedSize, |
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1995 const std::string& publicId) |
440
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1996 { |
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1997 boost::mutex::scoped_lock lock(mutex_); |
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1998 |
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1999 int64_t top; |
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2000 if (!db_.LookupResource(top, type, publicId)) |
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2001 { |
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2002 throw OrthancException(ErrorCode_UnknownResource); |
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2003 } |
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2004 |
646 | 2005 std::stack<int64_t> toExplore; |
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2006 toExplore.push(top); |
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2007 |
646 | 2008 countInstances = 0; |
2009 countSeries = 0; | |
2010 countStudies = 0; | |
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2011 diskSize = 0; |
646 | 2012 uncompressedSize = 0; |
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2013 dicomDiskSize = 0; |
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2014 dicomUncompressedSize = 0; |
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2015 |
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2016 while (!toExplore.empty()) |
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2017 { |
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2018 // Get the internal ID of the current resource |
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diff
changeset
|
2019 int64_t resource = toExplore.top(); |
23e5b35e3c5c
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diff
changeset
|
2020 toExplore.pop(); |
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diff
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|
2021 |
1247 | 2022 ResourceType thisType = db_.GetResourceType(resource); |
440
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diff
changeset
|
2023 |
702
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delete custom attachment
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diff
changeset
|
2024 std::list<FileContentType> f; |
1247 | 2025 db_.ListAvailableAttachments(f, resource); |
702
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delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2026 |
7592a48e97e4
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diff
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|
2027 for (std::list<FileContentType>::const_iterator |
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delete custom attachment
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diff
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|
2028 it = f.begin(); it != f.end(); ++it) |
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diff
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|
2029 { |
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diff
changeset
|
2030 FileInfo attachment; |
1247 | 2031 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2032 { |
2987
96089d1aba4d
New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2033 if (attachment.GetContentType() == FileContentType_Dicom) |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2034 { |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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diff
changeset
|
2035 dicomDiskSize += attachment.GetCompressedSize(); |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2036 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
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diff
changeset
|
2037 } |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2038 |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2039 diskSize += attachment.GetCompressedSize(); |
702
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2040 uncompressedSize += attachment.GetUncompressedSize(); |
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diff
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|
2041 } |
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diff
changeset
|
2042 } |
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diff
changeset
|
2043 |
440
23e5b35e3c5c
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diff
changeset
|
2044 if (thisType == ResourceType_Instance) |
23e5b35e3c5c
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diff
changeset
|
2045 { |
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diff
changeset
|
2046 countInstances++; |
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diff
changeset
|
2047 } |
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diff
changeset
|
2048 else |
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diff
changeset
|
2049 { |
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diff
changeset
|
2050 switch (thisType) |
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diff
changeset
|
2051 { |
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diff
changeset
|
2052 case ResourceType_Study: |
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diff
changeset
|
2053 countStudies++; |
23e5b35e3c5c
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diff
changeset
|
2054 break; |
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diff
changeset
|
2055 |
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diff
changeset
|
2056 case ResourceType_Series: |
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diff
changeset
|
2057 countSeries++; |
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diff
changeset
|
2058 break; |
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diff
changeset
|
2059 |
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diff
changeset
|
2060 default: |
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diff
changeset
|
2061 break; |
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diff
changeset
|
2062 } |
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diff
changeset
|
2063 |
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diff
changeset
|
2064 // Tag all the children of this resource as to be explored |
23e5b35e3c5c
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diff
changeset
|
2065 std::list<int64_t> tmp; |
1247 | 2066 db_.GetChildrenInternalId(tmp, resource); |
440
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diff
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|
2067 for (std::list<int64_t>::const_iterator |
656 | 2068 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
changeset
|
2069 { |
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diff
changeset
|
2070 toExplore.push(*it); |
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diff
changeset
|
2071 } |
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diff
changeset
|
2072 } |
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diff
changeset
|
2073 } |
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diff
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|
2074 |
646 | 2075 if (countStudies == 0) |
2076 { | |
2077 countStudies = 1; | |
2078 } | |
2079 | |
2080 if (countSeries == 0) | |
2081 { | |
2082 countSeries = 1; | |
2083 } | |
2084 } | |
2085 | |
2086 | |
2665
389d050a2e66
fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2664
diff
changeset
|
2087 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
389d050a2e66
fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
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2664
diff
changeset
|
2088 unsigned int threadSleep) |
511
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diff
changeset
|
2089 { |
2940
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refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2090 int stableAge; |
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
2091 |
4767d36679ed
refactoring access to Orthanc configuration
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2898
diff
changeset
|
2092 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
2093 OrthancConfiguration::ReaderLock lock; |
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
2094 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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diff
changeset
|
2095 } |
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
2096 |
511
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monitoring of stable patients/studies/series
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diff
changeset
|
2097 if (stableAge <= 0) |
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diff
changeset
|
2098 { |
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diff
changeset
|
2099 stableAge = 60; |
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|
2100 } |
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diff
changeset
|
2101 |
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diff
changeset
|
2102 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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changeset
|
2103 |
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diff
changeset
|
2104 while (!that->done_) |
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monitoring of stable patients/studies/series
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diff
changeset
|
2105 { |
2665
389d050a2e66
fix deadlock, speed up unit tests
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parents:
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diff
changeset
|
2106 // Check for stable resources each few seconds |
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fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2107 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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diff
changeset
|
2108 |
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440
diff
changeset
|
2109 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2110 |
511
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diff
changeset
|
2111 while (!that->unstableResources_.IsEmpty() && |
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monitoring of stable patients/studies/series
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diff
changeset
|
2112 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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diff
changeset
|
2113 { |
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diff
changeset
|
2114 // This DICOM resource has not received any new instance for |
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|
2115 // some time. It can be considered as stable. |
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|
2116 |
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diff
changeset
|
2117 UnstableResourcePayload payload; |
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diff
changeset
|
2118 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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diff
changeset
|
2119 |
513 | 2120 // Ensure that the resource is still existing before logging the change |
1247 | 2121 if (that->db_.IsExistingResource(id)) |
511
3b735fdf320b
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changeset
|
2122 { |
1177
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Plugins can monitor changes through callbacks
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changeset
|
2123 switch (payload.GetResourceType()) |
513 | 2124 { |
1177
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Plugins can monitor changes through callbacks
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diff
changeset
|
2125 case ResourceType_Patient: |
1237 | 2126 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2127 break; |
511
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2128 |
1177
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Plugins can monitor changes through callbacks
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diff
changeset
|
2129 case ResourceType_Study: |
1237 | 2130 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2131 break; |
511
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|
2132 |
1177
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Plugins can monitor changes through callbacks
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changeset
|
2133 case ResourceType_Series: |
1237 | 2134 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2135 break; |
2136 | |
2137 default: | |
2138 throw OrthancException(ErrorCode_InternalError); | |
2139 } | |
2140 | |
2141 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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changeset
|
2142 } |
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changeset
|
2143 } |
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diff
changeset
|
2144 } |
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diff
changeset
|
2145 |
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diff
changeset
|
2146 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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changeset
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2147 } |
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changeset
|
2148 |
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diff
changeset
|
2149 |
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diff
changeset
|
2150 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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changeset
|
2151 Orthanc::ResourceType type, |
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diff
changeset
|
2152 const std::string& publicId) |
511
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diff
changeset
|
2153 { |
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diff
changeset
|
2154 // WARNING: Before calling this method, "mutex_" must be locked. |
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changeset
|
2155 |
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changeset
|
2156 assert(type == Orthanc::ResourceType_Patient || |
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changeset
|
2157 type == Orthanc::ResourceType_Study || |
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monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2158 type == Orthanc::ResourceType_Series); |
3b735fdf320b
monitoring of stable patients/studies/series
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diff
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|
2159 |
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
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1162
diff
changeset
|
2160 UnstableResourcePayload payload(type, publicId); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
1162
diff
changeset
|
2161 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
2162 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1177
diff
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|
2163 |
1237 | 2164 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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diff
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|
2165 } |
521 | 2166 |
2167 | |
2168 | |
3034
54e422fe31ce
moving LookupResource to graveyard
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parents:
3033
diff
changeset
|
2169 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1727
diff
changeset
|
2170 ResourceType level, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2171 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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parents:
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diff
changeset
|
2172 const std::string& value) |
615 | 2173 { |
1727 | 2174 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2175 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2176 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2177 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2178 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2179 |
615 | 2180 result.clear(); |
2181 | |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2182 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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moving LookupResource to graveyard
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diff
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|
2183 |
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moving LookupResource to graveyard
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parents:
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diff
changeset
|
2184 std::vector<DatabaseConstraint> query; |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2185 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2186 |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2187 std::list<std::string> tmp; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2188 |
3034
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diff
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|
2189 { |
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parents:
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diff
changeset
|
2190 boost::mutex::scoped_lock lock(mutex_); |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2191 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2192 } |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2193 |
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diff
changeset
|
2194 CopyListToVector(result, tmp); |
615 | 2195 } |
2196 | |
2197 | |
699
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|
2198 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
2929e17f8447
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diff
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|
2199 const std::string& publicId) |
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|
2200 { |
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diff
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|
2201 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2202 |
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diff
changeset
|
2203 Transaction t(*this); |
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|
2204 |
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diff
changeset
|
2205 ResourceType resourceType; |
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diff
changeset
|
2206 int64_t resourceId; |
1294 | 2207 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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diff
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|
2208 { |
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diff
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|
2209 return StoreStatus_Failure; // Inexistent resource |
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diff
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|
2210 } |
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diff
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|
2211 |
704
4789da60d655
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diff
changeset
|
2212 // Remove possible previous attachment |
1247 | 2213 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
2929e17f8447
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diff
changeset
|
2214 |
704
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diff
changeset
|
2215 // Locate the patient of the target resource |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2216 int64_t patientId = resourceId; |
4789da60d655
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diff
changeset
|
2217 for (;;) |
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diff
changeset
|
2218 { |
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diff
changeset
|
2219 int64_t parent; |
1247 | 2220 if (db_.LookupParent(parent, patientId)) |
704
4789da60d655
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diff
changeset
|
2221 { |
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diff
changeset
|
2222 // We have not reached the patient level yet |
4789da60d655
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diff
changeset
|
2223 patientId = parent; |
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diff
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|
2224 } |
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diff
changeset
|
2225 else |
4789da60d655
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diff
changeset
|
2226 { |
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diff
changeset
|
2227 // We have reached the patient level |
4789da60d655
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diff
changeset
|
2228 break; |
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diff
changeset
|
2229 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2230 } |
4789da60d655
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2231 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2232 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2233 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2234 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2235 |
1247 | 2236 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
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diff
changeset
|
2237 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2238 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2239 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2240 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2241 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2242 |
699
2929e17f8447
add attachments to resources
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diff
changeset
|
2243 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2244 |
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diff
changeset
|
2245 return StoreStatus_Success; |
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diff
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|
2246 } |
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diff
changeset
|
2247 |
702
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2248 |
7592a48e97e4
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diff
changeset
|
2249 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
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diff
changeset
|
2250 FileContentType type) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2251 { |
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diff
changeset
|
2252 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
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diff
changeset
|
2253 Transaction t(*this); |
7592a48e97e4
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diff
changeset
|
2254 |
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diff
changeset
|
2255 ResourceType rtype; |
7592a48e97e4
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diff
changeset
|
2256 int64_t id; |
1294 | 2257 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
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diff
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|
2258 { |
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diff
changeset
|
2259 throw OrthancException(ErrorCode_UnknownResource); |
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diff
changeset
|
2260 } |
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diff
changeset
|
2261 |
1247 | 2262 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
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diff
changeset
|
2263 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2264 if (IsUserContentType(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2265 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2266 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
2267 } |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2268 |
702
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diff
changeset
|
2269 t.Commit(0); |
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diff
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|
2270 } |
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diff
changeset
|
2271 |
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diff
changeset
|
2272 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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1247
diff
changeset
|
2273 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
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1247
diff
changeset
|
2274 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
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diff
changeset
|
2275 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2276 boost::mutex::scoped_lock lock(mutex_); |
3315
8bf33fa68435
Fix missing DB transactions in some write operations
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diff
changeset
|
2277 |
8bf33fa68435
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3187
diff
changeset
|
2278 Transaction transaction(*this); |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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1247
diff
changeset
|
2279 db_.SetGlobalProperty(property, value); |
3315
8bf33fa68435
Fix missing DB transactions in some write operations
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3187
diff
changeset
|
2280 transaction.Commit(0); |
1249
40725595aaf0
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diff
changeset
|
2281 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
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diff
changeset
|
2282 |
40725595aaf0
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diff
changeset
|
2283 |
2668
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changeset
|
2284 bool ServerIndex::LookupGlobalProperty(std::string& value, |
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diff
changeset
|
2285 GlobalProperty property) |
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diff
changeset
|
2286 { |
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changeset
|
2287 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2288 return db_.LookupGlobalProperty(value, property); |
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diff
changeset
|
2289 } |
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changeset
|
2290 |
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diff
changeset
|
2291 |
1218
efece308018e
report database version in /system
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diff
changeset
|
2292 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
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diff
changeset
|
2293 const std::string& defaultValue) |
efece308018e
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1198
diff
changeset
|
2294 { |
1239 | 2295 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2296 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2297 if (LookupGlobalProperty(value, property)) |
1239 | 2298 { |
2299 return value; | |
2300 } | |
2301 else | |
2302 { | |
2303 return defaultValue; | |
2304 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2305 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2306 |
1352 | 2307 |
2308 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2309 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2310 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2311 ResourceType levelOfInterest) |
1352 | 2312 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2313 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2314 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2315 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2316 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2317 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2318 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2321 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2322 |
1352 | 2323 result.Clear(); |
2324 | |
2325 boost::mutex::scoped_lock lock(mutex_); | |
2326 | |
2327 // Lookup for the requested resource | |
2328 int64_t id; | |
2329 ResourceType type; | |
2330 if (!db_.LookupResource(id, type, publicId) || | |
2331 type != expectedType) | |
2332 { | |
2333 return false; | |
2334 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2335 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2336 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2337 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2338 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2339 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2340 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2341 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2342 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2343 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2344 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2345 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2346 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2347 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2348 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2349 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2350 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2351 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2352 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2353 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2354 } |
1352 | 2355 else |
2356 { | |
2357 db_.GetMainDicomTags(result, id); | |
2358 return true; | |
2359 } | |
2360 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2361 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2362 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2363 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2364 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2365 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2366 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2367 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2368 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2369 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2370 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2371 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2373 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2377 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2394 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2402 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2403 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2404 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2405 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2406 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2407 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2408 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2409 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2410 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2411 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2412 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2413 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2414 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2415 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2416 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2417 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2418 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2419 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2420 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2421 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2422 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2423 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2424 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2425 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2426 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2427 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2428 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2429 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2430 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2431 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2432 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2433 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2434 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2435 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2436 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2437 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2438 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2439 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2440 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2441 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2442 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2443 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2444 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2445 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2446 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2447 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2448 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2449 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2450 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2451 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2452 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2453 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2454 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2455 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2456 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2457 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2458 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2459 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2460 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2461 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2462 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2463 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2464 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2465 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2466 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2467 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2468 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2469 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2470 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2471 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2472 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2473 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2474 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2475 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2476 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2477 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2478 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2479 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2480 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2481 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2482 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2483 |
4205 | 2484 void ServerIndex::ReconstructInstance(const ParsedDicomFile& dicom) |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2485 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2486 DicomMap summary; |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
2487 OrthancConfiguration::DefaultExtractDicomSummary(summary, dicom); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2488 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2489 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2490 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2517 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2518 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2519 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2520 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2521 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2522 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2523 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2524 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2525 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2526 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2527 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2528 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2529 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2530 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2531 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2532 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2533 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2534 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2535 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2536 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2537 !value->IsBinary()) |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2538 { |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2539 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2540 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2541 |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2542 t.Commit(0); // No change in the DB size |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2543 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2544 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2545 { |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2546 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2547 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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2548 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2549 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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2550 |
3029
ea653ec47f31
new class: DatabaseConstraint
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2551 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2552 const DatabaseLookup& source, |
2553 ResourceType queryLevel) const | |
2554 { | |
2555 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
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2556 |
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2557 target.clear(); |
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2558 target.reserve(source.GetConstraintsCount()); |
3031 | 2559 |
3027 | 2560 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2561 { | |
3031 | 2562 ResourceType level; |
2563 DicomTagType type; | |
3027 | 2564 |
3031 | 2565 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2566 | |
2567 if (type == DicomTagType_Identifier || | |
2568 type == DicomTagType_Main) | |
3027 | 2569 { |
3029
ea653ec47f31
new class: DatabaseConstraint
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2570 // Use the fact that patient-level tags are copied at the study level |
3031 | 2571 if (level == ResourceType_Patient && |
2572 queryLevel != ResourceType_Patient) | |
3027 | 2573 { |
3031 | 2574 level = ResourceType_Study; |
3027 | 2575 } |
3029
ea653ec47f31
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|
2576 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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2577 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2578 } |
2579 } | |
2580 } | |
2581 | |
2582 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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2583 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
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2584 std::vector<std::string>* instancesId, |
3025
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2585 const DatabaseLookup& lookup, |
039a9d262d64
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2586 ResourceType queryLevel, |
039a9d262d64
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2587 size_t limit) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2588 { |
3029
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2589 std::vector<DatabaseConstraint> normalized; |
3027 | 2590 NormalizeLookup(normalized, lookup, queryLevel); |
2591 | |
3075
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2592 std::list<std::string> resourcesList, instancesList; |
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2593 |
3027 | 2594 { |
2595 boost::mutex::scoped_lock lock(mutex_); | |
3075
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2596 |
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2597 if (instancesId == NULL) |
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2598 { |
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2599 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
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2600 } |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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2601 else |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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2602 { |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2603 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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2604 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2605 } |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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2606 |
ead8576a02ef
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2607 CopyListToVector(resourcesId, resourcesList); |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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2608 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2609 if (instancesId != NULL) |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2610 { |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2611 CopyListToVector(*instancesId, instancesList); |
3027 | 2612 } |
3025
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2613 } |
0 | 2614 } |